RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2082
(314 letters)
>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus),
beta-arrestin 1 [TaxId: 9913]}
Length = 171
Score = 277 bits (710), Expect = 2e-95
Identities = 92/169 (54%), Positives = 132/169 (78%)
Query: 6 KVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGRE 65
+VFKK SPNGKLT+Y+GKRDFVD++ VEP+DGVV+ + +Y+++R+V+ + C+FRYGRE
Sbjct: 3 RVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGRE 62
Query: 66 EDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS 125
+ ++LGL F+K+L++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S
Sbjct: 63 DLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCS 122
Query: 126 VTLQPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAP 174
VTLQPGP++TG+ CGV Y VK F EN ++ H+R++V L IRK+QYAP
Sbjct: 123 VTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAP 171
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
arrestin [TaxId: 9913]}
Length = 173
Score = 266 bits (682), Expect = 4e-91
Identities = 67/171 (39%), Positives = 114/171 (66%), Gaps = 4/171 (2%)
Query: 7 VFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRYGREE 66
+FKK S + +T+Y+GKRD++D+V VEP+DGVV+ + + ++ ++V+ + C+FRYG+E+
Sbjct: 3 IFKKISRDKSVTIYLGKRDYIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQED 62
Query: 67 DEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQDCLLKKLGPKAYPFTFNITPAAPPSV 126
+++GL+F+++LY + Q++P + T++Q+ L+KKLG YPF P SV
Sbjct: 63 IDVMGLSFRRDLYFSQVQVFPPVGAS-GATTRLQESLIKKLGANTYPFLLTFPDYLPCSV 121
Query: 127 TLQPGPDETGEPCGVTYYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAP 174
LQP P + G+ CGV + +K F + E D+ ++S+V L IRK+Q+AP
Sbjct: 122 MLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAP 172
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual
arrestin [TaxId: 9913]}
Length = 211
Score = 120 bits (301), Expect = 2e-33
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 51/175 (29%)
Query: 178 GRQPCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQQG 237
G QP F +S L L V+L K++Y H E I V++ + N++ K VKKIK +V+Q
Sbjct: 3 GPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQV 62
Query: 238 VDVVLFQNGQFRHSVDCVE----------------------------------------T 257
+VVL+ + + +V E T
Sbjct: 63 TNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDT 122
Query: 258 HLASPDP------KDAFGIVVSYMVKVKLYLGALGGEL-----SAELPFILMHPK 301
+LAS K GI+VSY +KVKL + L GEL + E+PF LMHP+
Sbjct: 123 NLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 177
>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),
beta-arrestin 1 [TaxId: 9913]}
Length = 218
Score = 113 bits (283), Expect = 8e-31
Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 53/179 (29%)
Query: 176 KNGRQPCTVVRKDFMLSPGDLELEVTLDKQLYAHNEKIAVSICIRNNSNKVVKKIKAMVQ 235
+ G QP + F++S L LE +LDK++Y H E I+V++ + NN+NK VKKIK V+
Sbjct: 2 RPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVR 61
Query: 236 QGVDVVLFQNGQFRHSVDCVETH------------------------------------- 258
Q D+ LF Q++ V E
Sbjct: 62 QYADICLFNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHE 121
Query: 259 ---------LASPDPKDAFGIVVSYMVKVKLYLGALG-------GELSAELPFILMHPK 301
L ++ GI+VSY VKVKL + G +++ ELPF LMHPK
Sbjct: 122 DTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 180
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.3 bits (63), Expect = 1.1
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 113 PFTFNITPAAPPSVTLQPG-PDETGEP 138
++ + P TL PG + T +
Sbjct: 146 VLNISVNNSTPAVQTLSPGVTNNTDKD 172
>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B
14 (HRV-14) [TaxId: 12131]}
Length = 273
Score = 27.8 bits (62), Expect = 1.7
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 230 IKAMVQQGVDVVLFQNGQFRHSVDCVETHLASPDPKDAFGIVVSYM 275
+ ++VQ + LF +F + T + +VV M
Sbjct: 90 LSSLVQLRKKLELFTYVRFDSEYTILATASQPDSANYSSNLVVQAM 135
>g1lya.1 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) [TaxId:
9606]}
Length = 338
Score = 27.3 bits (59), Expect = 2.5
Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 7/81 (8%)
Query: 6 KVFKKCSPNGKLTLYMGKRDFVDYVTGVEPIDGVVVFEEDYIQDRKVFGQVVCSFRY--- 62
+ G+ + K + +T G + EDY G+ +C +
Sbjct: 242 AIGAVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGM 301
Query: 63 ----GREEDEILGLNFQKELY 79
ILG F Y
Sbjct: 302 DIPPPSGPLWILGDVFIGRYY 322
>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus
aureus [TaxId: 1280]}
Length = 264
Score = 27.1 bits (59), Expect = 3.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 221 NNSNKVVKKIKAMVQQGVDVV 241
NN V ++KAM+ +G D++
Sbjct: 23 NNVESAVTRVKAMMDEGADII 43
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 26.7 bits (58), Expect = 3.2
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 212 KIAVSICIRNNSNKVVKKIK 231
+ A IC+ N ++++++
Sbjct: 161 ETAGEICVYTNDQIILEELE 180
>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus
anthracis [TaxId: 1392]}
Length = 273
Score = 26.7 bits (58), Expect = 3.9
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 221 NNSNKVVKKIKAMVQQGVDVV 241
N + V+ K M +G ++
Sbjct: 39 NEVDAAVRHAKEMRDEGAHII 59
>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 270
Score = 26.4 bits (57), Expect = 4.4
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 221 NNSNKVVKKIKAMVQQGVDVV 241
+ + VK AM G +V
Sbjct: 22 LDLDDAVKHGLAMAAAGAGIV 42
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),
dimerisation domain {Escherichia coli [TaxId: 562]}
Length = 143
Score = 25.7 bits (56), Expect = 5.2
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 207 YAHNEKIAVSICIRNNSNKVVKKIKAMVQQGVDVVLFQNGQFRHSVDCVETHLAS 261
Y H +I V + + ++VK I AM V +F D +
Sbjct: 6 YQHGARIGVLVAAKGADEELVKHI-AM------HVAASKPEFIKPEDVSAEVVEK 53
>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli
[TaxId: 562]}
Length = 282
Score = 25.9 bits (56), Expect = 6.8
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 221 NNSNKVVKKIKAMVQQGVDVV 241
N+ VK M+ G ++
Sbjct: 35 NSLIDAVKHANLMINAGATII 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,160,716
Number of extensions: 55258
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 20
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)