BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2083
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 24/104 (23%)
Query: 62 DKPLRVKDHMYGLPIRDIKFHDNYVLSMDSS-------------VVKIWSKDNGSLFTCI 108
D ++V D G + D+K H NYV S+ S V ++W G + +
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Query: 109 ESGDQTQFNNLCHIP---------ESGMMFIANENKKILTYYIP 143
+G N +C P E G+ ENK I+ P
Sbjct: 235 AAG--APINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAP 276
>pdb|3O6X|A Chain A, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|B Chain B, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|C Chain C, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|D Chain D, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|E Chain E, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|F Chain F, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
Length = 729
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 25 FNNLCHIPESGMMFIANENKKIL 47
N+CH+PE+ M ++ N+++ +L
Sbjct: 552 LTNICHVPEALMHYMDNQSRAVL 574
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 116 FNNLCHIPESGMMFIANENKKIL 138
N+CH+PE+ M ++ N+++ +L
Sbjct: 552 LTNICHVPEALMHYMDNQSRAVL 574
>pdb|2HR7|A Chain A, Insulin Receptor (Domains 1-3)
pdb|2HR7|B Chain B, Insulin Receptor (Domains 1-3)
Length = 486
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 117 NNLCHIPESGMMFIANENKKILTYYIPSLGPAPKWCGFLD 156
NN C IPE + N + + T P LGP PK C L+
Sbjct: 281 NNKC-IPECPSGYTMNSSNLLCT---PCLGPCPKVCHLLE 316
>pdb|3W14|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|F Chain F, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 609
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 117 NNLCHIPESGMMFIANENKKILTYYIPSLGPAPKWCGFLD 156
NN C IPE + N + + T P LGP PK C L+
Sbjct: 281 NNKC-IPECPSGYTMNSSNLLCT---PCLGPCPKVCHLLE 316
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 117 NNLCHIPESGMMFIANENKKILTYYIPSLGPAPKWCGFLD 156
NN C IPE + N + + T P LGP PK C L+
Sbjct: 281 NNKC-IPECPSGYTMNSSNLLCT---PCLGPCPKVCHLLE 316
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 117 NNLCHIPESGMMFIANENKKILTYYIPSLGPAPKWCGFLD 156
NN C IPE + N + + T P LGP PK C L+
Sbjct: 281 NNKC-IPECPSGYTMNSSNLLCT---PCLGPCPKVCHLLE 316
>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
1(Vrk1)
Length = 368
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 68 KDHMYGLPIRDIKFHDNYVLSMDSS---------VVKIWSKDNGSLFTCIESGDQTQFNN 118
K+ GLPI F Y+ M+SS VVK+ DNG LFT + +F
Sbjct: 35 KEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFT------ELKFYQ 88
Query: 119 LCHIPESGMMFIANENKKIL 138
PE +I K L
Sbjct: 89 RAAKPEQIQKWIRTRKLKYL 108
>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
Length = 361
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 68 KDHMYGLPIRDIKFHDNYVLSMDSS---------VVKIWSKDNGSLFTCIESGDQTQFNN 118
K+ GLPI F Y+ M+SS VVK+ DNG LFT + +F
Sbjct: 35 KEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFT------ELKFYQ 88
Query: 119 LCHIPESGMMFIANENKKIL 138
PE +I K L
Sbjct: 89 RAAKPEQIQKWIRTRKLKYL 108
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 17/75 (22%)
Query: 61 ADKPLRVKDHMYGLPIRDIKFHDNYVL-----SMDSSV--------VKIWSKDNGSLF-T 106
ADK L+V G + DIK H++ VL S DS + VKIW G L T
Sbjct: 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694
Query: 107 CIESGDQTQFNNLCH 121
E +Q N CH
Sbjct: 695 YDEHSEQV---NCCH 706
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 17/75 (22%)
Query: 61 ADKPLRVKDHMYGLPIRDIKFHDNYVL-----SMDSSV--------VKIWSKDNGSLF-T 106
ADK L+V G + DIK H++ VL S DS + VKIW G L T
Sbjct: 642 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 701
Query: 107 CIESGDQTQFNNLCH 121
E +Q N CH
Sbjct: 702 YDEHSEQV---NCCH 713
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,499,865
Number of Sequences: 62578
Number of extensions: 250880
Number of successful extensions: 435
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 13
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)