RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2083
(248 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 4e-05
Identities = 50/310 (16%), Positives = 86/310 (27%), Gaps = 104/310 (33%)
Query: 21 DQTQFNNLCHIP--ESGMMFIANENKKILTYYIPAFYLYDIRADK---------PLRVKD 69
D HI M +E K +L Y+ D R P R+
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------DCRPQDLPREVLTTNPRRLS- 331
Query: 70 HMYGLPIRDIKFH-DNYVLSMDSSVVKIWSKDNGSLFTCIESGD-QTQFNNLC------H 121
+ IRD DN+ + I SL +E + + F+ L H
Sbjct: 332 -IIAESIRDGLATWDNWKHVNCDKLTTIIES---SL-NVLEPAEYRKMFDRLSVFPPSAH 386
Query: 122 IP------------ESGMMFIANE---------NKKILTYYIPSL--------------- 145
IP +S +M + N+ K T IPS+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 146 ----------------GPAPK-----WCGF----LDNLTEELEENIIENVYDDYKFVTRQ 180
P + L N+ + V+ D++F+ Q
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-EQ 505
Query: 181 ELEDLGLGHLIGTSLLRAYMHGFFMDIRLYRKAKSVSAP-FE-----FEEFKKKKIRERI 234
++ S+L ++ Y+ + P +E +F K I
Sbjct: 506 KIRHDSTAWNASGSIL-----NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 235 EQERTRGVQL 244
+ T +++
Sbjct: 561 CSKYTDLLRI 570
Score = 32.1 bits (72), Expect = 0.20
Identities = 40/249 (16%), Positives = 67/249 (26%), Gaps = 72/249 (28%)
Query: 36 MMFIANE----NKKILTYYIPAFY----LYDIRADKPLRV-----KDHMYGLPIRDIKFH 82
M F E K IL+ + AF D++ D P + DH+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGT- 64
Query: 83 DNYVLSMDSSVVKIW---SKDNGSLFTCIESGDQTQFNNL-------CHIPESGM-MFIA 131
L W SK + +E + + L P M+I
Sbjct: 65 --LRL--------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 132 ------NENKKILTYYIPSLGPAPKWCGFLDNLTEELEE-----NII------------- 167
N+N+ Y + L P L + L E N++
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQP-------YLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 168 ENVYDDYKFVTRQELED--LGLGHLIGTSLLRAYMHGFFMDIR---LYRKAKSVSAPFEF 222
+V YK + + + L L + + + I R S +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 223 EEFKKKKIR 231
+ + R
Sbjct: 228 HSIQAELRR 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.060
Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 40/122 (32%)
Query: 20 GDQTQFNNLCHIPESGM-M------FIANE-----NKKILTYYIPAFYLYDIRADKPLRV 67
G Q Q GM M A + + Y F + DI + P+ +
Sbjct: 1625 GSQEQ----------GMGMDLYKTSKAAQDVWNRADNHFKDTY--GFSILDIVINNPVNL 1672
Query: 68 KDHMYGLPIRDIKFHDNYVLSM------DSSVV--KIWSKDNGSLFTCIESGD-----QT 114
H G + I+ +NY +M D + KI+ + N + + T
Sbjct: 1673 TIHFGGEKGKRIR--ENY-SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 115 QF 116
QF
Sbjct: 1730 QF 1731
Score = 28.5 bits (63), Expect = 2.9
Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 72/211 (34%)
Query: 23 TQFNNLCHIPESGMMFIANEN---KKILTYYIPAFYLY----DIRADK----------PL 65
+ N H+P + I+ N +++ P LY +R K P
Sbjct: 354 NKTN--SHLPAGKQVEISLVNGAKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 66 R---VKDHMYGLPIRDIKFHDNY------VLSMD--SSVVKIWSKD---------NGS-L 104
+K LP+ FH + +++ D + V +KD +GS L
Sbjct: 410 SERKLKFSNRFLPV-ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 105 FTCIESGDQTQ--FNNLCHIP---ESGMMFIANENKKILTYYIPSLGPAPKWCGFLDNLT 159
+ SG ++ + + +P E+ F A IL + GP G L LT
Sbjct: 469 --RVLSGSISERIVDCIIRLPVKWETTTQFKAT---HILDF-----GPG-GASG-LGVLT 516
Query: 160 EELEE----NIIE------NVYDDYKFVTRQ 180
++ +I N DDY F +Q
Sbjct: 517 HRNKDGTGVRVIVAGTLDINPDDDYGF--KQ 545
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical
domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Length = 182
Score = 32.5 bits (74), Expect = 0.062
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 164 ENIIENVYDDYKFVTRQELEDLGLGHLIGTSLLRAYMHGFFMDIRLYRKAKSVSAPFEFE 223
+I+ +V + ++ ++LE L Y + ++ A S + +
Sbjct: 108 YSILRHVAEVLEYTKDEQLES--LFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSL 165
Query: 224 EFKKKKIRERIEQERTR 240
+ + + I R
Sbjct: 166 DLNEDEREVLINNINRR 182
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 32.0 bits (72), Expect = 0.15
Identities = 6/62 (9%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 56 LYDIRADKPLRVKDHMYGLPIRDIKFH-DNYVL--SMDSSVVKIWSKDNGSLFTCIESGD 112
D V + H D+ +L ++ +++ + + D
Sbjct: 153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVD 212
Query: 113 QT 114
+
Sbjct: 213 EE 214
>3ism_A CG8862; endonuclease, endonuclease inhibitor complex, metal
complex, hydrolase, hydrolase inhibitor-hydrolase
complex; 2.20A {Drosophila melanogaster}
Length = 267
Score = 29.3 bits (65), Expect = 1.0
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 51 IPAFYLYDIRADKPLRVKDHM-YGLPIRD-IKFHDNYVLSMDSS 92
IPA P R+ M YG P D ++ H +YVLS D
Sbjct: 3 IPAQENNVSLTATPSRIGQIMKYGFPGLDHVRSHSDYVLSYDRR 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.0
Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 3/20 (15%)
Query: 132 NENKKI---LTYYIPSLGPA 148
KK+ L Y PA
Sbjct: 20 QALKKLQASLKLYADDSAPA 39
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 28.0 bits (63), Expect = 1.1
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 76 IRD-IKFHDNYVLSM--DSSV--VKIWSKDNGSLFTCIESGDQTQFNNL 119
+R+ + +VLS+ V I + QT+F +L
Sbjct: 42 VRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDL 90
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 27.5 bits (61), Expect = 1.2
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 12/67 (17%)
Query: 135 KKILTYYIPSLGPAPKW-----CGFLDNLT-EELEENIIENVYDDYKFV---TRQELEDL 185
+ +P +L + E EE ++ N +DD +F+ T ++LE+
Sbjct: 8 HHHSSGLVPRGSHMSGLGEAGMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEA 67
Query: 186 G---LGH 189
G H
Sbjct: 68 GVQDPAH 74
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural
GE riken structural genomics/proteomics initiative,
RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Length = 186
Score = 28.8 bits (64), Expect = 1.3
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 33 ESGMMFIANENKKILTYYIPAFYLYDIRADKPLR 66
G+ ++P + ++R + R
Sbjct: 151 RRGLKVERMSKTVYTVDWVPPECIAEVRRESLGR 184
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia,
homologous recomination, polymorphism, phosphoprotein,
beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB:
3eu7_A
Length = 356
Score = 28.3 bits (62), Expect = 2.6
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 88 SMDSSVVKIWSKDNGSLFTCIESGDQTQFNNLCHIP--ESGMMFIANENK 135
+ + + IW+ G L + D Q ++CH E G++FI +
Sbjct: 199 TTIMNNIVIWNLKTGQLLKKMHIDDSYQ-ASVCHKAYSEMGLLFIVLSHP 247
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 27.3 bits (61), Expect = 2.7
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 76 IRD-IKFHDNYVLSM-DSSVVK---IWSKDNGSLFTCIESGDQTQFNNL 119
+RD +VLSM +K I ++ T+F +L
Sbjct: 54 VRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRFTDL 102
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 27.8 bits (63), Expect = 3.3
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 20/71 (28%)
Query: 59 IRADKPLRVKDHMYGLPIRD----------IKFHDNYVLSMDSSVVKIWSKDNGSLFTCI 108
D PL D M I + + H N + + +GSL +
Sbjct: 197 EMFDAPLPSFDPM----ISETLVEVMNAEGPQLHTN------AIPKAVVKNTDGSLTLEL 246
Query: 109 ESGDQTQFNNL 119
E G + L
Sbjct: 247 EDGRSETVDCL 257
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 26.5 bits (59), Expect = 4.2
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 76 IRD-IKFHDNYVLSM-DSSVVK---IWSKDNGSLFTCIESGDQTQFNNL 119
+RD +VL++ +K I ++ T+F++L
Sbjct: 33 LRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDL 81
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A
{Paracoccus denitrificans PD1222}
Length = 154
Score = 26.9 bits (60), Expect = 4.4
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 9/46 (19%)
Query: 153 GFLDNLTEELEENIIENVYDDYKFVTRQELEDLGLGHLIGTSLLRA 198
F++ L L E YDD L G + S+ +
Sbjct: 34 DFVEALAHTLRAAGAEVWYDD---------FSLRPGDSLRRSIDKG 70
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural
genomics, COG294 protein structure initiative; NMR
{Rhodopseudomonas palustris} SCOP: b.122.1.8
Length = 145
Score = 26.7 bits (59), Expect = 5.2
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 29 CHIPESGMMFIANENKKILTYYIPAFYLYDIRADKPLR 66
G+ I E T F DI+ADKPL+
Sbjct: 56 EGKEIVGIAEIIREAYPDPTDASGKFVCVDIKADKPLK 93
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 26.7 bits (59), Expect = 7.9
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 172 DDYKFVTRQELEDLGLGHLIGTSL--LRAYMHGFFMDIRLYRKA 213
+ + L G+G G SL L GFF+ + +A
Sbjct: 244 EALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQA 287
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.418
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,823,972
Number of extensions: 224651
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 27
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)