RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2083
         (248 letters)



>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 355

 Score = 29.9 bits (65), Expect = 0.31
 Identities = 7/77 (9%), Positives = 23/77 (29%), Gaps = 10/77 (12%)

Query: 26  NNLCHIPESGMMFIANENKKILTYYIPAFYLYDIRADKPLRVKDHMYGLPIRDIKFHDNY 85
           + +     S  + ++    +          +Y++R+ K +          I  + F    
Sbjct: 285 SAITTFYVSDNILVSGSENQF--------NIYNLRSGKLVHANILKDADQIWSVNFKGKT 336

Query: 86  VLSMDSS--VVKIWSKD 100
           +++         +   D
Sbjct: 337 LVAAVEKDGQSFLEILD 353


>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 293

 Score = 27.5 bits (59), Expect = 1.7
 Identities = 10/61 (16%), Positives = 16/61 (26%)

Query: 55  YLYDIRADKPLRVKDHMYGLPIRDIKFHDNYVLSMDSSVVKIWSKDNGSLFTCIESGDQT 114
            L+DI     LRV +    L       +   V       +K+W                 
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 115 Q 115
           +
Sbjct: 261 R 261


>d1prta_ d.166.1.1 (A:) Pertussis toxin, S1 subunit {Bordetella
           pertussis [TaxId: 520]}
          Length = 234

 Score = 25.3 bits (55), Expect = 5.9
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 55  YLYDIRADKPLRVKDHMYGLPIRDIKFHDNYVLSMD 90
           Y+Y++RAD      ++ YG      ++ D Y  +  
Sbjct: 86  YIYEVRAD------NNFYGAASSYFEYVDTYGDNAG 115


>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
           3 {Bacillus sp., strain ps3 [TaxId: 1409]}
          Length = 131

 Score = 24.8 bits (54), Expect = 7.4
 Identities = 7/45 (15%), Positives = 17/45 (37%)

Query: 195 LLRAYMHGFFMDIRLYRKAKSVSAPFEFEEFKKKKIRERIEQERT 239
           ++ A   GF  DI +    +     + + +   + + E I   + 
Sbjct: 65  IIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKD 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 962,758
Number of extensions: 45447
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 8
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)