RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2085
         (358 letters)



>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 49  TSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCFDSEVVTFEILSDDYSSELNSIA 108
            SV  + DGQ V+S  + +  V+ +   N + K          T E+    +   + S+A
Sbjct: 258 YSVVFTRDGQSVVSGSLDR-SVKLWNLQNANNKS-DSKTPNSGTCEVTYIGHKDFVLSVA 315

Query: 109 INPVHQLICVGTIEGKVEAWDPRMKVKAGTLDCAFNCIS 147
                + I  G+ +  V  WD +       L    N + 
Sbjct: 316 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354



 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 3/108 (2%)

Query: 28  PTNDIRRRIELIQDFEMPGVSTSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCFD 87
           P       +EL +  +   V   V+ S DG+Y+ +      +V      +L  +      
Sbjct: 45  PALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSA 104

Query: 88  SEVVTFEIL---SDDYSSELNSIAINPVHQLICVGTIEGKVEAWDPRM 132
           +      +    S      + S+  +P  + +  G  +  +  WD   
Sbjct: 105 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN 152


>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 337

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 27  LPTNDIRRRIELIQDFEMPGVSTSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCF 86
           L    I R    I       V  +V IS   ++V + G  K  V+ ++  +   K     
Sbjct: 33  LIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVS- 89

Query: 87  DSEVVTFEILSDDYSSELNSIAINPVHQLICVGTIEGKVEAWDPRMKVKAGTLDCAFNCI 146
                  ++   +  + + S  + P    + VG     +  WD          +   +  
Sbjct: 90  -------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 147 SN 148
           + 
Sbjct: 143 AC 144



 Score = 28.2 bits (61), Expect = 1.4
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 37  ELIQDFEMPGVSTSVRISPDGQYVLSTG 64
             I   +      S  IS D +Y+++  
Sbjct: 298 ASIFQSKESSSVLSCDISVDDKYIVTGS 325


>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 371

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 7/84 (8%), Positives = 18/84 (21%), Gaps = 12/84 (14%)

Query: 49  TSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCFDSEVVTFEILSDDYSSELNSIA 108
           +    + D   +         V  YE                        +++ ++  + 
Sbjct: 11  SCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVHEL-----------KEHNGQVTGVD 58

Query: 109 INPVHQLICVGTIEGKVEAWDPRM 132
             P    I     +     W  + 
Sbjct: 59  WAPDSNRIVTCGTDRNAYVWTLKG 82


>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
          [TaxId: 562]}
          Length = 333

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 36 IELIQDFEMPGVSTSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCFDSEVV 91
          + L Q  ++PG    + +SPD +Y+      + RV  Y             +S + 
Sbjct: 27 LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 82



 Score = 30.2 bits (66), Expect = 0.41
 Identities = 7/75 (9%), Positives = 20/75 (26%), Gaps = 1/75 (1%)

Query: 3   VEYCYQTNWHKQAVTLVIIGGRYLLPTNDIRRRIELIQDFEMPGVS-TSVRISPDGQYVL 61
               + T   +             + +      +   + F+          +   G+Y++
Sbjct: 232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLI 291

Query: 62  STGIYKPRVRCYETD 76
           + G     +  YE  
Sbjct: 292 AAGQKSHHISVYEIV 306


>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
           protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 12/99 (12%)

Query: 49  TSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCFDSEVVTFEILSDDYSSELNSIA 108
            ++   P+G    +        R ++                       D+    + S++
Sbjct: 230 NAICFFPNGNAFATGSDDA-TCRLFDLRADQELMTYSH-----------DNIICGITSVS 277

Query: 109 INPVHQLICVGTIEGKVEAWDPRMKVKAGTLDCAFNCIS 147
            +   +L+  G  +     WD     +AG L    N +S
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316


>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
           {Paracoccus denitrificans [TaxId: 266]}
          Length = 337

 Score = 35.9 bits (81), Expect = 0.005
 Identities = 9/106 (8%), Positives = 29/106 (27%), Gaps = 11/106 (10%)

Query: 27  LPTNDIRRRIELIQDFEMPGVSTSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCF 86
                + + I +      P       ++P G+   +T      +   +            
Sbjct: 18  TEKMAVDKVITIADAGPTP---MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74

Query: 87  DSEVVTFEILSDDYSSELNSIAINPVHQLICVGTIEGKVEAWDPRM 132
            +         ++    L   A++P  + + +     ++E     +
Sbjct: 75  STP--------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112



 Score = 31.3 bits (69), Expect = 0.18
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 37  ELIQDFEMPGVSTSVRISPDGQYVLSTGIYKPRVRCYETDNL----SMKFERCFDSEVVT 92
             I+   +P    SV +S DG  V   G     +  Y+ + L     +         + +
Sbjct: 271 ASIKRVPLPHSYYSVNVSTDGSTVWLGGALG-DLAAYDAETLEKKGQVDLPGNASMSLAS 329

Query: 93  FEILSDD 99
             + + D
Sbjct: 330 VRLFTRD 336



 Score = 30.2 bits (66), Expect = 0.43
 Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 45  PGVSTSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCFDSEVVTFEILSD-DYSSE 103
            G      +     +  ST +   + R +   N+   F+      +     +        
Sbjct: 228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFD------LEKNASIKRVPLPHS 281

Query: 104 LNSIAINPVHQLICVGTIEGKVEAWDPRMKVKAGTLD 140
             S+ ++     + +G   G + A+D     K G +D
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318


>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
          Methanosarcina mazei [TaxId: 2209]}
          Length = 301

 Score = 35.2 bits (79), Expect = 0.009
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 12/82 (14%)

Query: 5  YCYQTNWHKQAVTLVIIGGRYLLPTNDIRRRIELIQDFEMPGVSTSVRISPDGQYVLSTG 64
          + Y  N     ++++           D+    ++     +        ISPDG  V    
Sbjct: 3  FAYIANSESDNISVI-----------DVTSN-KVTATIPVGSNPMGAVISPDGTKVYVAN 50

Query: 65 IYKPRVRCYETDNLSMKFERCF 86
           +   V   +T   ++      
Sbjct: 51 AHSNDVSIIDTATNNVIATVPA 72



 Score = 31.4 bits (69), Expect = 0.14
 Identities = 7/77 (9%), Positives = 21/77 (27%)

Query: 1   MSVEYCYQTNWHKQAVTLVIIGGRYLLPTNDIRRRIELIQDFEMPGVSTSVRISPDGQYV 60
            +       N       +  +   +   +       ++     +      + ++PDG+ V
Sbjct: 199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKV 258

Query: 61  LSTGIYKPRVRCYETDN 77
                +   V   +T  
Sbjct: 259 YVALSFCNTVSVIDTAT 275


>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
           {Pseudomonas putida [TaxId: 303]}
          Length = 346

 Score = 35.1 bits (79), Expect = 0.010
 Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 18/118 (15%)

Query: 22  GGRYLLPTN--------DIRRRIELIQDFEMPGVS--TSVRISPDGQYVLSTGIYKPRVR 71
           G  Y++ TN        D+     + +   MP      +  ++PD +       +   + 
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65

Query: 72  CYETDNLSMKFERCFDSEVVTFEILSDDYSSELNSIAINPVHQLICVGTIEGKVEAWD 129
             + D        C ++       +  +    + S AI+P  + +       +     
Sbjct: 66  GIDLDT-------CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116



 Score = 30.5 bits (67), Expect = 0.32
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 37  ELIQDFEMPGVSTSVRISPDGQYVLSTGIYKPRVRCYETDNL 78
           +LI+   +      V     G  +   G +   +  +  D L
Sbjct: 283 KLIKAANLDHTYYCVAFDKKGDKLYLGGTFN-DLAVFNPDTL 323


>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 325

 Score = 34.5 bits (77), Expect = 0.016
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 46  GVSTSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCFDSEVVTFEILSDDYSSELN 105
             +T +   P    +         VRC +  +  +         VV F   +   SS + 
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP-------PVVQF---TGHGSSVVT 67

Query: 106 SIAINPVH--QLICVGTIEGKVEAWDPRMKVKAGTLDCAFNC 145
           ++  +P+   Q +C G   GKV  W      ++ +++     
Sbjct: 68  TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS 109


>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 311

 Score = 33.7 bits (75), Expect = 0.025
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 15/88 (17%)

Query: 46  GVSTSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFERCFDSEVVTFEILSDDYSSELN 105
           G +  +  +P G  +         V      +L         ++   +     ++S +  
Sbjct: 18  GTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSL---------TDTEIYT----EHSHQTT 62

Query: 106 SIAINPVHQLICVGTIEGKVEAWDPRMK 133
               +P       G + G V  WD    
Sbjct: 63  VAKTSPSGYYCASGDVHGNVRIWDTTQT 90


>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
          {Paracoccus denitrificans [TaxId: 266]}
          Length = 355

 Score = 29.8 bits (65), Expect = 0.50
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 46 GVSTSVRISPDGQYVLSTGIYKPRVRCYETDN 77
          G   +  ++ DG ++        R+   E  +
Sbjct: 47 GFLPNPVVADDGSFIAHASTVFSRIARGERTD 78


>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 342

 Score = 29.4 bits (64), Expect = 0.63
 Identities = 7/39 (17%), Positives = 17/39 (43%)

Query: 105 NSIAINPVHQLICVGTIEGKVEAWDPRMKVKAGTLDCAF 143
           + I I P   L+ + + +G +  +   ++ K   L  + 
Sbjct: 15  SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL 53



 Score = 29.0 bits (63), Expect = 0.96
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 49 TSVRISPDGQYVLSTGIYKPRVRCYETDNLSMKFE 83
          + ++I P    +L T      +  Y+ D  +   +
Sbjct: 15 SDIKIIPSKSLLLITSWDG-SLTVYKFDIQAKNVD 48



 Score = 27.1 bits (58), Expect = 3.0
 Identities = 10/71 (14%), Positives = 25/71 (35%)

Query: 69  RVRCYETDNLSMKFERCFDSEVVTFEILSDDYSSELNSIAINPVHQLICVGTIEGKVEAW 128
            V  ++         + F        +   + +  +NSI  +P H+ +     +G +  W
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278

Query: 129 DPRMKVKAGTL 139
           + + + K    
Sbjct: 279 NLQTRKKIKNF 289


>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
          dehydrogenase [Burkholderia cenocepacia J2315] 
          gi|198040180|emb|CAR56163.1| putative amine
          dehydrogenase [Burkholderia cenocepacia J2315] 
          gi|194561004|ref|YP_002096029.1| hypothetical protein
          BCPG_04901 [Burkholderia cenocepacia PC184] 
          gi|124876520|gb|EAY66510.1| hypothetical protein
          BCPG_04901 [Burkholderia cenocepacia PC184] 
          gi|170737581|ref|YP_001778841.1| amine dehydrogenase
          [Burkholderia cenocepacia MC0-3] 
          gi|169819769|gb|ACA94351.1| Amine dehydrogenase
          [Burkholderia cenocepacia MC0-3] 
          gi|78061451|ref|YP_371359.1| amine dehydrogenase
          [Burkholderia sp. 383]   gi|77969336|gb|ABB10715.1|
          Amine dehydrogenase [Burkholderia sp. 383] 
          gi|107025662|ref|YP_623173.1| amine dehydrogenase
          [Burkholderia cenocepacia AU 1054] 
          gi|116693156|ref|YP_838689.1| amine dehydrogenase
          [Burkholderia cenocepacia HI2424] 
          gi|105895036|gb|ABF78200.1| Amine dehydrogenase
          [Burkholderia cenocepacia AU 1054] 
          gi|116651156|gb|ABK11796.1| Amine dehydrogenase
          [Burkholderia cenocepacia HI2424]  E=8e-14 s/c=0.25
          id=29% cov=82%
          Length = 321

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 46 GVSTSVRISPDGQYVLSTGIYKPRVRCYETDN 77
          G      I+PD +  +    Y  R       +
Sbjct: 17 GFGPGFAIAPDRKASVVATTYFSRGSHGTRTD 48


>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
          {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 299

 Score = 28.0 bits (60), Expect = 1.8
 Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 49 TSVRISPDGQYVLSTGIYKPRVRCYETDN 77
          T++  S DG+ + S       +  ++   
Sbjct: 16 TALSSSADGKTLFSADAEG-HINSWDIST 43


>d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 141

 Score = 26.8 bits (59), Expect = 2.2
 Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 15/124 (12%)

Query: 225 FVTRQELEDLGLGHLIGTSLLR--------AYMHGFFMDIRLYRKAKSVSAPFEFEEFKK 276
           F++++    +      GT LLR             +               P+  ++   
Sbjct: 13  FISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEPYTKQQLNN 72

Query: 277 KKIRERI---EQERTRGVQLNKL----PKVNQELALKLMDEKQKAEETESRKKKKKLQLS 329
               E I   +      + ++ L    P + +E A       +  E  E+        L 
Sbjct: 73  MSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKYCRPESQEHPEADPGSAAPYLK 132

Query: 330 ANLL 333
              +
Sbjct: 133 TKFI 136


>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 393

 Score = 27.9 bits (60), Expect = 2.3
 Identities = 18/91 (19%), Positives = 34/91 (37%)

Query: 62  STGIYKPRVRCYETDNLSMKFERCFDSEVVTFEILSDDYSSELNSIAINPVHQLICVGTI 121
                   +  YET+           +      +    +SS + S++ N   + +C    
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309

Query: 122 EGKVEAWDPRMKVKAGTLDCAFNCISNERDT 152
           +GK+  WD + K +  TL+   + I  E D 
Sbjct: 310 DGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340


>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
           {Nitrosomonas europaea [TaxId: 915]}
          Length = 146

 Score = 26.7 bits (58), Expect = 3.0
 Identities = 9/85 (10%), Positives = 19/85 (22%), Gaps = 3/85 (3%)

Query: 157 GKASSDESSEEEEEEEEEEESSDDDQAWTKEIKKTYNLGPAPKWC---GFLDNLTEELEE 213
           G     ES  +    E  EE+              +             F   +     +
Sbjct: 35  GHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPD 94

Query: 214 NIIENVYDDYKFVTRQELEDLGLGH 238
             ++       + +  E+      H
Sbjct: 95  RKLDTGIVRAAWFSIDEIRAKQAMH 119


>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 360

 Score = 27.1 bits (58), Expect = 3.2
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 49  TSVRISPDGQYVLSTG 64
           T +R+S D + V+   
Sbjct: 318 TDLRLSADRKTVMVRK 333


>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
           dimerisation domain {Cow (Bos taurus), mitochondrial
           [TaxId: 9913]}
          Length = 109

 Score = 26.0 bits (57), Expect = 3.6
 Identities = 6/42 (14%), Positives = 13/42 (30%)

Query: 150 RDTEEKEGKASSDESSEEEEEEEEEEESSDDDQAWTKEIKKT 191
           R   +     +       ++E   E E+    Q +  +   T
Sbjct: 45  RRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSIT 86


>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase
           (beta-N-acetylhexosaminidase) {Serratia marcescens
           [TaxId: 615]}
          Length = 443

 Score = 27.2 bits (59), Expect = 3.7
 Identities = 12/55 (21%), Positives = 18/55 (32%)

Query: 180 DDQAWTKEIKKTYNLGPAPKWCGFLDNLTEELEENIIENVYDDYKFVTRQELEDL 234
           DD+ W  EI     L           + T  L     +       F +RQ+  D+
Sbjct: 41  DDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDI 95


>d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 140

 Score = 26.2 bits (58), Expect = 4.3
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 119 GTIEGKVEAWDPRMKVKAGTLDCAFNCISNERDTEEKEGKASSDESS 165
           G  + K+  + P  + K   +  AF          E+ G A + ESS
Sbjct: 6   GVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESS 52


>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
           remodeling ATPase ISWI {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 102

 Score = 24.8 bits (54), Expect = 9.4
 Identities = 6/28 (21%), Positives = 16/28 (57%)

Query: 160 SSDESSEEEEEEEEEEESSDDDQAWTKE 187
           +++  S+  + + EE+   D+ +  T+E
Sbjct: 61  NTELGSDATKVQREEQRKIDEAEPLTEE 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,372,757
Number of extensions: 67173
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 48
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)