Query psy2089
Match_columns 216
No_of_seqs 122 out of 452
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 23:59:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3801|consensus 100.0 1.1E-28 2.5E-33 190.7 11.0 87 32-119 1-87 (94)
2 PF13232 Complex1_LYR_1: Compl 99.7 2E-17 4.4E-22 116.0 7.2 61 39-99 1-61 (61)
3 PF05347 Complex1_LYR: Complex 99.6 2E-15 4.4E-20 104.1 6.6 59 39-97 1-59 (59)
4 KOG4620|consensus 98.5 3.3E-07 7.2E-12 69.5 7.3 64 37-101 7-72 (80)
5 KOG3426|consensus 97.7 9.2E-05 2E-09 60.4 6.2 62 37-98 22-88 (124)
6 PF13233 Complex1_LYR_2: Compl 97.6 0.00028 6.2E-09 53.7 7.4 71 41-111 1-82 (104)
7 KOG3466|consensus 97.1 0.0012 2.5E-08 55.8 6.1 62 37-99 12-74 (157)
8 KOG4100|consensus 96.0 0.046 9.9E-07 45.0 8.0 66 39-106 10-75 (125)
9 PF04716 ETC_C1_NDUFA5: ETC co 92.4 0.57 1.2E-05 33.6 6.1 52 37-88 3-55 (57)
10 COG1647 Esterase/lipase [Gener 61.8 24 0.00052 32.3 6.0 91 8-105 95-187 (243)
11 PF03317 ELF: ELF protein; In 53.7 14 0.00029 33.8 3.1 16 188-203 90-105 (284)
12 PRK00499 rnpA ribonuclease P; 52.0 23 0.00049 27.7 3.8 25 53-77 46-70 (114)
13 PF10854 DUF2649: Protein of u 47.4 16 0.00034 27.4 2.1 17 168-184 40-56 (67)
14 PRK14865 rnpA ribonuclease P; 45.8 59 0.0013 25.6 5.3 24 54-77 54-77 (116)
15 PF00825 Ribonuclease_P: Ribon 43.2 68 0.0015 24.6 5.2 21 58-78 56-76 (111)
16 PF09164 VitD-bind_III: Vitami 37.7 84 0.0018 23.8 4.7 38 53-91 4-41 (68)
17 PRK03459 rnpA ribonuclease P; 37.2 62 0.0014 26.0 4.3 24 54-77 57-80 (122)
18 PHA00646 hypothetical protein 36.2 30 0.00065 25.8 2.1 19 166-184 36-54 (65)
19 PF06694 Plant_NMP1: Plant nuc 31.0 1.1E+02 0.0023 29.3 5.3 63 32-104 248-316 (325)
20 PRK00396 rnpA ribonuclease P; 30.9 1.3E+02 0.0029 24.5 5.3 23 55-77 57-79 (130)
21 PRK04820 rnpA ribonuclease P; 29.2 96 0.0021 25.9 4.3 19 59-77 63-81 (145)
22 PRK00588 rnpA ribonuclease P; 27.1 1.5E+02 0.0032 23.6 4.9 25 53-77 51-75 (118)
23 COG1725 Predicted transcriptio 26.4 15 0.00033 30.2 -0.9 36 15-55 31-66 (125)
24 PRK04390 rnpA ribonuclease P; 26.1 1.7E+02 0.0038 23.2 5.1 19 59-77 59-77 (120)
25 TIGR00188 rnpA ribonuclease P 25.4 59 0.0013 25.0 2.3 25 53-77 49-73 (105)
26 KOG3365|consensus 24.5 2.8E+02 0.0061 23.7 6.2 55 37-91 49-104 (145)
27 PRK03031 rnpA ribonuclease P; 23.7 1.1E+02 0.0023 24.3 3.5 19 59-77 62-80 (122)
28 PRK01732 rnpA ribonuclease P; 23.5 1.9E+02 0.004 22.9 4.8 20 58-77 59-78 (114)
29 PRK01903 rnpA ribonuclease P; 22.4 64 0.0014 26.4 2.0 23 55-77 61-83 (133)
30 PRK01313 rnpA ribonuclease P; 21.7 2.3E+02 0.005 23.1 5.1 25 53-77 55-79 (129)
31 PRK00730 rnpA ribonuclease P; 21.0 2.3E+02 0.0049 23.7 5.0 24 54-77 55-78 (138)
32 PF07664 FeoB_C: Ferrous iron 20.9 1.8E+02 0.0039 20.0 3.7 37 163-199 3-39 (54)
No 1
>KOG3801|consensus
Probab=99.96 E-value=1.1e-28 Score=190.72 Aligned_cols=87 Identities=52% Similarity=0.869 Sum_probs=83.3
Q ss_pred ccCcccHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy2089 32 THMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPD 111 (216)
Q Consensus 32 ~~MS~SRkqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevLKRQsvI~~mY~~d 111 (216)
++|+ +|.+|++|||.+||++++||+||||+|+.|+|||.||+|++++||.++++++++|+++|++++||++|++||.++
T Consensus 1 ~~~~-sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~~lY~~~ 79 (94)
T KOG3801|consen 1 PQMV-SRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIGQLYPKD 79 (94)
T ss_pred CCcc-cHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 3566 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeecc
Q psy2089 112 KLVIETQM 119 (216)
Q Consensus 112 kLVVE~~~ 119 (216)
|+|||..+
T Consensus 80 klIvE~k~ 87 (94)
T KOG3801|consen 80 KLIVEVKK 87 (94)
T ss_pred ceeeeccc
Confidence 99999543
No 2
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.71 E-value=2e-17 Score=116.03 Aligned_cols=61 Identities=56% Similarity=0.970 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Q psy2089 39 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK 99 (216)
Q Consensus 39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevLK 99 (216)
++||+|||++||+++.||++|+|+|++++||++|++|++++||++|+.++++|+++|+.|+
T Consensus 1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~ 61 (61)
T PF13232_consen 1 QQVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR 61 (61)
T ss_pred ChHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999999999999999999999999999999999999999874
No 3
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.60 E-value=2e-15 Score=104.07 Aligned_cols=59 Identities=36% Similarity=0.615 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q psy2089 39 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEV 97 (216)
Q Consensus 39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLev 97 (216)
++|++|||++||+++.||+++.+++++..+|++|++|++++||++|+.++++|++.|++
T Consensus 1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~ 59 (59)
T PF05347_consen 1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM 59 (59)
T ss_pred ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999999999999999999999874
No 4
>KOG4620|consensus
Probab=98.54 E-value=3.3e-07 Score=69.49 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHHHH
Q psy2089 37 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNV--DNNEQISLLYNEGLKELEVLKRQ 101 (216)
Q Consensus 37 SRkqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~--TDPekIe~LLkkGeeeLevLKRQ 101 (216)
.+++||+|||.+||+|+-.|..+- .-+...+++||++|+++ .|.-.||.|+.-|+++++.+.+.
T Consensus 7 LQrqVlhlYR~~lraa~~Kp~~~~-~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~p 72 (80)
T KOG4620|consen 7 LQRQVLHLYRDLLRAARGKPGAEA-RRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSP 72 (80)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCc
Confidence 578999999999999999997544 44556899999999998 68999999999999999988765
No 5
>KOG3426|consensus
Probab=97.71 E-value=9.2e-05 Score=60.39 Aligned_cols=62 Identities=29% Similarity=0.506 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHHHHcCC-CCcch----HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Q psy2089 37 SKDMILKLYKALLRESSKF-PAYNY----RMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVL 98 (216)
Q Consensus 37 SRkqVLsLYRqLLRaARkF-pdYNf----ReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevL 98 (216)
.|.+|+.|||...|..=.+ -+||- -+-++..+|+.|++|.++|||.-|.-|+-+|.++|+.+
T Consensus 22 ARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkei 88 (124)
T KOG3426|consen 22 ARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEI 88 (124)
T ss_pred HHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHH
Confidence 5899999999999987653 44554 45688899999999999999999999999999998876
No 6
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=97.61 E-value=0.00028 Score=53.70 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCCCcchH-------HHHHHHH----HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy2089 41 ILKLYKALLRESSKFPAYNYR-------MYFLRRT----REKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFK 109 (216)
Q Consensus 41 VLsLYRqLLRaARkFpdYNfR-------eYfrRrI----RdeFReNK~~TDPekIe~LLkkGeeeLevLKRQsvI~~mY~ 109 (216)
|++|||.+||+-+.++..... ....+++ +++|+.+++.+|+......+.+.+.-+..|+.|.....+..
T Consensus 1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~qr~y~eL~e 80 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKNQREYKELLE 80 (104)
T ss_pred ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999998743221 5677777 99999999999899999999999999999999998776654
Q ss_pred CC
Q psy2089 110 PD 111 (216)
Q Consensus 110 ~d 111 (216)
..
T Consensus 81 rY 82 (104)
T PF13233_consen 81 RY 82 (104)
T ss_pred hc
Confidence 43
No 7
>KOG3466|consensus
Probab=97.13 E-value=0.0012 Score=55.82 Aligned_cols=62 Identities=26% Similarity=0.349 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Q psy2089 37 SKDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK 99 (216)
Q Consensus 37 SRkqVLsLYRqLLRaARkFpd-YNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevLK 99 (216)
++++|.+|||..||.-..|-. .|.--|+.--+|.-|.+|++ .|-.++..||++|+++|-..+
T Consensus 12 hkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~r 74 (157)
T KOG3466|consen 12 HKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWR 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhc
Confidence 789999999999999988753 45556788899999999998 999999999999999886655
No 8
>KOG4100|consensus
Probab=95.96 E-value=0.046 Score=44.95 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2089 39 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQ 106 (216)
Q Consensus 39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevLKRQsvI~~ 106 (216)
..|--|||.+||.-+-.|. .-|.-=-..+|+|||.|+++ +|.+++-++.+=+.-..+|..|.-++.
T Consensus 10 ~rvrlLYkriLrlHr~lp~-~~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~l~qql~~~g 75 (125)
T KOG4100|consen 10 PRVRLLYKRILRLHRGLPA-ELRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAVALSQQLSSAG 75 (125)
T ss_pred chHHHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4566699999999999996 66777777899999999999 899999998888877777776655433
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=92.43 E-value=0.57 Score=33.59 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy2089 37 SKDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLY 88 (216)
Q Consensus 37 SRkqVLsLYRqLLRaARkFpd-YNfReYfrRrIRdeFReNK~~TDPekIe~LL 88 (216)
.|.....||.++|+.-.++|. ..||+|...-+++-+.-.+.+.|.++|++.+
T Consensus 3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i 55 (57)
T PF04716_consen 3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI 55 (57)
T ss_pred hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence 367889999999999999984 6699999999999999998899999998765
No 10
>COG1647 Esterase/lipase [General function prediction only]
Probab=61.80 E-value=24 Score=32.32 Aligned_cols=91 Identities=16% Similarity=0.329 Sum_probs=63.2
Q ss_pred cchhHHhhcCCCCcccccccCCCcccCcccHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccC--CCCHHHHH
Q psy2089 8 GRFYAKQMGDKLPNVECLALSTPVTHMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKN--VDNNEQIS 85 (216)
Q Consensus 8 ~~~~~~~~~~~lp~~~~~~~S~~~~~MS~SRkqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~--~TDPekIe 85 (216)
|--+|-.++...|-.--+.|+|++..+++ ..++.=+-+..+.+.++++.+. ..++++.++.++ .+.-.+++
T Consensus 95 GGv~alkla~~~p~K~iv~m~a~~~~k~~--~~iie~~l~y~~~~kk~e~k~~-----e~~~~e~~~~~~~~~~~~~~~~ 167 (243)
T COG1647 95 GGVFALKLAYHYPPKKIVPMCAPVNVKSW--RIIIEGLLEYFRNAKKYEGKDQ-----EQIDKEMKSYKDTPMTTTAQLK 167 (243)
T ss_pred hhHHHHHHHhhCCccceeeecCCcccccc--hhhhHHHHHHHHHhhhccCCCH-----HHHHHHHHHhhcchHHHHHHHH
Confidence 45567778889998888899999987762 4555555555566777766554 234555555553 23457888
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy2089 86 LLYNEGLKELEVLKRQVLIS 105 (216)
Q Consensus 86 ~LLkkGeeeLevLKRQsvI~ 105 (216)
++++.+...++.+.-.+.|-
T Consensus 168 ~~i~~~~~~~~~I~~pt~vv 187 (243)
T COG1647 168 KLIKDARRSLDKIYSPTLVV 187 (243)
T ss_pred HHHHHHHhhhhhcccchhhe
Confidence 99999999999998665543
No 11
>PF03317 ELF: ELF protein; InterPro: IPR004990 This is a family of hypothetical proteins from cereal crops.
Probab=53.66 E-value=14 Score=33.76 Aligned_cols=16 Identities=50% Similarity=0.640 Sum_probs=13.6
Q ss_pred CCceEEEEcCCCCCCc
Q psy2089 188 TPSSIIIILPPESQRG 203 (216)
Q Consensus 188 ~~~~~~~~~~~~~~~~ 203 (216)
|-+|.+|-||||-|.-
T Consensus 90 ~~~sflitlppeiqdp 105 (284)
T PF03317_consen 90 TCCSFLITLPPEIQDP 105 (284)
T ss_pred hhhheEEecCcccCCH
Confidence 6689999999998853
No 12
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=52.03 E-value=23 Score=27.71 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=17.2
Q ss_pred cCCCCcchHHHHHHHHHHHHhhccC
Q psy2089 53 SKFPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 53 RkFpdYNfReYfrRrIRdeFReNK~ 77 (216)
+++..-.-|+.++|++|+.||.|.+
T Consensus 46 KKvgkAV~RNriKR~lRE~~R~~~~ 70 (114)
T PRK00499 46 KKVGNAVVRNRIKRLIRESFRELKD 70 (114)
T ss_pred cccCchhhHhHHHHHHHHHHHHhhh
Confidence 3343335677888888888888765
No 13
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=47.43 E-value=16 Score=27.36 Aligned_cols=17 Identities=53% Similarity=1.030 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHhh
Q psy2089 168 FNIGLIKLIFFLTWFRL 184 (216)
Q Consensus 168 ~~~~~~~~~~~~~~~~~ 184 (216)
+-||.--.|+|||||-|
T Consensus 40 ~MiGiWiVilFLtWf~l 56 (67)
T PF10854_consen 40 IMIGIWIVILFLTWFLL 56 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45899999999999975
No 14
>PRK14865 rnpA ribonuclease P; Provisional
Probab=45.81 E-value=59 Score=25.56 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=17.0
Q ss_pred CCCCcchHHHHHHHHHHHHhhccC
Q psy2089 54 KFPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 54 kFpdYNfReYfrRrIRdeFReNK~ 77 (216)
++..-..|+.++|++|+.||.|++
T Consensus 54 Kvg~AV~RNRiKR~lRE~~R~~~~ 77 (116)
T PRK14865 54 KVGNAVVRNRIKRLVREFYRLNKS 77 (116)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhc
Confidence 333345778888888888887765
No 15
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=43.21 E-value=68 Score=24.62 Aligned_cols=21 Identities=38% Similarity=0.314 Sum_probs=17.6
Q ss_pred cchHHHHHHHHHHHHhhccCC
Q psy2089 58 YNYRMYFLRRTREKFQSNKNV 78 (216)
Q Consensus 58 YNfReYfrRrIRdeFReNK~~ 78 (216)
-..|+.++|.+|+.||.|.+.
T Consensus 56 AV~RNriKR~lRe~~R~~~~~ 76 (111)
T PF00825_consen 56 AVKRNRIKRRLREAFRLNKPE 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999873
No 16
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=37.69 E-value=84 Score=23.77 Aligned_cols=38 Identities=11% Similarity=0.264 Sum_probs=28.0
Q ss_pred cCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q psy2089 53 SKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEG 91 (216)
Q Consensus 53 RkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkG 91 (216)
-++..++|-||- .++.+.|+.......|+++++++++-
T Consensus 4 ~dYse~tFtEyK-KrL~e~l~~k~P~at~~~l~~lve~R 41 (68)
T PF09164_consen 4 ADYSENTFTEYK-KRLAERLRAKLPDATPTELKELVEKR 41 (68)
T ss_dssp TTTTTS-HHHHH-HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred hhhhhccHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 456667777765 48999999999988999999988753
No 17
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=37.24 E-value=62 Score=25.97 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=16.7
Q ss_pred CCCCcchHHHHHHHHHHHHhhccC
Q psy2089 54 KFPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 54 kFpdYNfReYfrRrIRdeFReNK~ 77 (216)
+..+-..|+..+|++|+.||.+.+
T Consensus 57 KvG~AV~RNRiKR~lRe~~R~~~~ 80 (122)
T PRK03459 57 AVGNAVIRHRVSRRLRHICADIVD 80 (122)
T ss_pred eccchhHHHHHHHHHHHHHHHhhh
Confidence 333345677888888888888765
No 18
>PHA00646 hypothetical protein
Probab=36.19 E-value=30 Score=25.85 Aligned_cols=19 Identities=42% Similarity=0.936 Sum_probs=15.0
Q ss_pred hhhhhhHHHHHHHHHHHhh
Q psy2089 166 YLFNIGLIKLIFFLTWFRL 184 (216)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~ 184 (216)
+..-+|.--.||||+||-+
T Consensus 36 ~~~MVgIWlvI~Fl~Wf~i 54 (65)
T PHA00646 36 LTLMVGIWLVILFLTWFSL 54 (65)
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 3445788889999999965
No 19
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=30.98 E-value=1.1e+02 Score=29.30 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=46.6
Q ss_pred ccCcccHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2089 32 THMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNV------DNNEQISLLYNEGLKELEVLKRQVLI 104 (216)
Q Consensus 32 ~~MS~SRkqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~------TDPekIe~LLkkGeeeLevLKRQsvI 104 (216)
+-++|.-++|+.+|+.+++..+... .+|+.+.+-... ..|--+.+++.++++-|..+.|-.-|
T Consensus 248 ~gLGPAa~Rlle~y~~l~klL~nL~----------~lr~Sh~ai~~gs~~t~s~e~~s~~~ivs~~e~al~~lnr~l~i 316 (325)
T PF06694_consen 248 HGLGPAANRLLELYKMLLKLLGNLA----------TLRDSHAAIAAGSSPTTSDEPSSVTQIVSECETALTQLNRSLAI 316 (325)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcCCCccccCCCccHHHHHHHHHHHHHHHHhhhHH
Confidence 4556677999999999999887754 455555443332 34667889999999999999987544
No 20
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=30.93 E-value=1.3e+02 Score=24.51 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=18.3
Q ss_pred CCCcchHHHHHHHHHHHHhhccC
Q psy2089 55 FPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 55 FpdYNfReYfrRrIRdeFReNK~ 77 (216)
+..-..|+-.+|.+|+.||.|++
T Consensus 57 ~g~AV~RNRiKR~lRE~fR~~~~ 79 (130)
T PRK00396 57 VKLAVDRNRLKRLIRESFRLNQH 79 (130)
T ss_pred CccHhHHHHHHHHHHHHHHHhhc
Confidence 33345788899999999999887
No 21
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=29.21 E-value=96 Score=25.88 Aligned_cols=19 Identities=21% Similarity=0.003 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHHhhccC
Q psy2089 59 NYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 59 NfReYfrRrIRdeFReNK~ 77 (216)
..|+-.+|.+|+.||.+.+
T Consensus 63 V~RNRiKR~lRE~fR~~~~ 81 (145)
T PRK04820 63 VGRNRIKRVLREAMRQLLP 81 (145)
T ss_pred hhHHHHHHHHHHHHHHhhh
Confidence 4677888888888887654
No 22
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=27.06 E-value=1.5e+02 Score=23.63 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=17.3
Q ss_pred cCCCCcchHHHHHHHHHHHHhhccC
Q psy2089 53 SKFPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 53 RkFpdYNfReYfrRrIRdeFReNK~ 77 (216)
++..+-..|+-++|++|+.||.+.+
T Consensus 51 KKvG~AV~RNRiKR~lRE~~R~~~~ 75 (118)
T PRK00588 51 KSVGSAVERHRVARRLRHVARPILK 75 (118)
T ss_pred eecCchhHHHHHHHHHHHHHHHhhh
Confidence 3343345677888888888888765
No 23
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=26.41 E-value=15 Score=30.17 Aligned_cols=36 Identities=36% Similarity=0.440 Sum_probs=30.8
Q ss_pred hcCCCCcccccccCCCcccCcccHHHHHHHHHHHHHHHcCC
Q psy2089 15 MGDKLPNVECLALSTPVTHMSVSKDMILKLYKALLRESSKF 55 (216)
Q Consensus 15 ~~~~lp~~~~~~~S~~~~~MS~SRkqVLsLYRqLLRaARkF 55 (216)
-||+||.+--++.-+.+ +...|-+-|+.|-+++=-+
T Consensus 31 pGdkLPSvRelA~~~~V-----NpnTv~raY~eLE~eG~i~ 66 (125)
T COG1725 31 PGDKLPSVRELAKDLGV-----NPNTVQRAYQELEREGIVE 66 (125)
T ss_pred CCCCCCcHHHHHHHhCC-----CHHHHHHHHHHHHHCCCEE
Confidence 49999999999988888 7788999999999987443
No 24
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=26.06 E-value=1.7e+02 Score=23.15 Aligned_cols=19 Identities=37% Similarity=0.435 Sum_probs=13.0
Q ss_pred chHHHHHHHHHHHHhhccC
Q psy2089 59 NYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 59 NfReYfrRrIRdeFReNK~ 77 (216)
..|+..+|.+|+.||.+.+
T Consensus 59 V~RNRiKR~lRE~~R~~~~ 77 (120)
T PRK04390 59 VERNYMKRVIREWFRLNQH 77 (120)
T ss_pred hhhhHHHHHHHHHHHhccc
Confidence 4566777777777776655
No 25
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=25.42 E-value=59 Score=25.01 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=19.0
Q ss_pred cCCCCcchHHHHHHHHHHHHhhccC
Q psy2089 53 SKFPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 53 RkFpdYNfReYfrRrIRdeFReNK~ 77 (216)
+++..-..|+.++|++|+.||.|++
T Consensus 49 KK~g~AV~RNriKR~lRe~~R~~~~ 73 (105)
T TIGR00188 49 KKVKNAVERNRIKRLIREVFRERQE 73 (105)
T ss_pred cccCchhHHHHHHHHHHHHHHHhhc
Confidence 3444446788899999999998876
No 26
>KOG3365|consensus
Probab=24.54 E-value=2.8e+02 Score=23.74 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q psy2089 37 SKDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEG 91 (216)
Q Consensus 37 SRkqVLsLYRqLLRaARkFpd-YNfReYfrRrIRdeFReNK~~TDPekIe~LLkkG 91 (216)
.++.+.-||-.+|+.-++.|. -.||.|...-+++...-.+.+.|-++++.-+.-|
T Consensus 49 ~~~rl~~ly~kil~~~eqIpkn~ayRk~Tesit~~kLa~~k~E~d~K~ledql~gG 104 (145)
T KOG3365|consen 49 PHERLRDLYTKILDVLEQIPKNAAYRKYTESITNQKLAMLKAEPDVKKLEDQLQGG 104 (145)
T ss_pred HHHHHHHHHHHhHHHHHHcchhhhhhHHHHHHHHHHHHHHHcchHHHHHHHHhcCC
Confidence 367888999999999999984 4489999988888887777777877666654444
No 27
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=23.72 E-value=1.1e+02 Score=24.31 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHhhccC
Q psy2089 59 NYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 59 NfReYfrRrIRdeFReNK~ 77 (216)
..|+..+|++|+.||.+.+
T Consensus 62 V~RNriKR~lRe~~R~~~~ 80 (122)
T PRK03031 62 VVRNRIKRQIRAALRQLLP 80 (122)
T ss_pred hhhhHHHHHHHHHHHHhhh
Confidence 4677777777777776644
No 28
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=23.47 E-value=1.9e+02 Score=22.88 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHHHhhccC
Q psy2089 58 YNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 58 YNfReYfrRrIRdeFReNK~ 77 (216)
-..|+-.+|.+|+.||.+++
T Consensus 59 AV~RNriKR~lRe~~R~~~~ 78 (114)
T PRK01732 59 AHERNRIKRLTRESFRLHQH 78 (114)
T ss_pred hhHHHHHHHHHHHHHHHhhh
Confidence 35777888888888887765
No 29
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=22.40 E-value=64 Score=26.40 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=17.9
Q ss_pred CCCcchHHHHHHHHHHHHhhccC
Q psy2089 55 FPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 55 FpdYNfReYfrRrIRdeFReNK~ 77 (216)
+..-..|+.++|.+|+.||.|++
T Consensus 61 ~g~AV~RNRiKR~lREa~R~~~~ 83 (133)
T PRK01903 61 VPRAVKRNRIKRLMREAYRLEKH 83 (133)
T ss_pred CCchhhhhHHHHHHHHHHHHhHh
Confidence 44445788889999999988876
No 30
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=21.69 E-value=2.3e+02 Score=23.10 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=18.2
Q ss_pred cCCCCcchHHHHHHHHHHHHhhccC
Q psy2089 53 SKFPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 53 RkFpdYNfReYfrRrIRdeFReNK~ 77 (216)
++..+-..|+.++|++|+.||.+..
T Consensus 55 KKvG~AV~RNRiKR~lRE~fR~~~~ 79 (129)
T PRK01313 55 KKNGNAVERNRIRRRLKEAVRLHAG 79 (129)
T ss_pred cccCcchHHHHHHHHHHHHHHHhch
Confidence 4444445788888888888888753
No 31
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=21.01 E-value=2.3e+02 Score=23.72 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=17.3
Q ss_pred CCCCcchHHHHHHHHHHHHhhccC
Q psy2089 54 KFPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 54 kFpdYNfReYfrRrIRdeFReNK~ 77 (216)
+..+-..|+.++|++|+.||.+.+
T Consensus 55 Kvg~AV~RNRiKR~lREafR~~~~ 78 (138)
T PRK00730 55 KFGKAHQRNRFKRIVREAFRHVRH 78 (138)
T ss_pred ccccchhHHHHHHHHHHHHHHhhc
Confidence 344445778888888888888765
No 32
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=20.88 E-value=1.8e+02 Score=19.96 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=23.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhccCCceEEEEcCCC
Q psy2089 163 MDCYLFNIGLIKLIFFLTWFRLQFSTPSSIIIILPPE 199 (216)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (216)
+.+|+..+.++-+.-++.=.++--..++..|+-|||=
T Consensus 3 ~~~y~~~~~~~l~~~~il~~~~~~~~~~~fimELP~Y 39 (54)
T PF07664_consen 3 FSLYLLGILVALLVGLILKKTILKGESSPFIMELPPY 39 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCeEEeCCCC
Confidence 4567766665544444433344555678899999973
Done!