Query psy2089
Match_columns 216
No_of_seqs 122 out of 452
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 23:59:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b6x_A AVRRPS4, avirulence pro 70.4 11 0.00037 28.6 5.9 47 60-106 33-82 (90)
2 2ljp_A Ribonuclease P protein 46.7 31 0.0011 25.9 5.0 23 55-77 56-78 (119)
3 1a6f_A RNAse P protein, ribonu 43.0 17 0.00057 27.6 2.9 19 59-77 58-76 (119)
4 1d6t_A Ribonuclease P, RNAse P 26.1 42 0.0014 25.2 2.7 20 58-77 56-75 (117)
5 1nz0_A Ribonuclease P protein 21.8 42 0.0014 25.1 1.9 20 59-78 59-78 (118)
6 2kyg_C Protein CBFA2T1; protei 17.7 92 0.0031 20.2 2.5 20 85-104 14-33 (38)
7 4am5_A Bacterioferritin; metal 16.8 3.4E+02 0.012 20.4 6.5 32 39-70 95-126 (159)
8 4ham_A LMO2241 protein; struct 14.5 3E+02 0.01 20.3 5.2 33 15-52 34-66 (134)
9 3jqo_C TRAN protein; helical o 11.8 68 0.0023 20.4 0.7 10 196-205 23-32 (34)
10 3q8k_A Flap endonuclease 1; he 10.9 62 0.0021 28.7 0.4 73 2-88 216-309 (341)
No 1
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=70.39 E-value=11 Score=28.57 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHhhccCCCCHHHHH---HHHHHHHHHHHHHHHHHHHhh
Q psy2089 60 YRMYFLRRTREKFQSNKNVDNNEQIS---LLYNEGLKELEVLKRQVLISQ 106 (216)
Q Consensus 60 fReYfrRrIRdeFReNK~~TDPekIe---~LLkkGeeeLevLKRQsvI~~ 106 (216)
.++-+....+++..+..++.+|.+|. .+|+.++.+|..|.||.+|+.
T Consensus 33 DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g 82 (90)
T 4b6x_A 33 DKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLR 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567778889998888899998885 589999999999999988754
No 2
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=46.68 E-value=31 Score=25.91 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=17.9
Q ss_pred CCCcchHHHHHHHHHHHHhhccC
Q psy2089 55 FPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 55 FpdYNfReYfrRrIRdeFReNK~ 77 (216)
+.+-..|+.++|++|+.||.+++
T Consensus 56 vg~AV~RNRiKR~lRe~~R~~~~ 78 (119)
T 2ljp_A 56 VRRAHERNRIKRLTRESFRLRQH 78 (119)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCTT
T ss_pred CCchhHHhHHHHHHHHHHHHHHh
Confidence 44445788888899999988876
No 3
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=43.04 E-value=17 Score=27.56 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHhhccC
Q psy2089 59 NYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 59 NfReYfrRrIRdeFReNK~ 77 (216)
..|+.++|++|+.||.|++
T Consensus 58 V~RNRiKR~lRE~~R~~~~ 76 (119)
T 1a6f_A 58 VMRNRIKRLIRQAFLEEKE 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hhHhHHHHHHHHHHHHhhc
Confidence 4677777777777777765
No 4
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit, hydrolase; NMR {Staphylococcus aureus} SCOP: d.14.1.2
Probab=26.15 E-value=42 Score=25.15 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHHHHhhccC
Q psy2089 58 YNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 58 YNfReYfrRrIRdeFReNK~ 77 (216)
-..|+.++|++|+.||.|++
T Consensus 56 AV~RNRiKR~lRE~~R~~~~ 75 (117)
T 1d6t_A 56 AVLRNKIKRAIRENFKVHKS 75 (117)
T ss_dssp TTHHHHHHHHHHHHHHHGGG
T ss_pred chHHhHHHHHHHHHHHHhhc
Confidence 45777888888888887765
No 5
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=21.81 E-value=42 Score=25.15 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHhhccCC
Q psy2089 59 NYRMYFLRRTREKFQSNKNV 78 (216)
Q Consensus 59 NfReYfrRrIRdeFReNK~~ 78 (216)
..|+.++|++|+.||.|++.
T Consensus 59 V~RNRiKR~lRE~~R~~~~~ 78 (118)
T 1nz0_A 59 TRRNKLKRWVREIFRRNKGV 78 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred hHHhHHHHHHHHHHHHHHhh
Confidence 46777888888888877663
No 6
>2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=17.72 E-value=92 Score=20.16 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2089 85 SLLYNEGLKELEVLKRQVLI 104 (216)
Q Consensus 85 e~LLkkGeeeLevLKRQsvI 104 (216)
+++++++++.....+||.+-
T Consensus 14 ~EiWkKaeeavnevkrQam~ 33 (38)
T 2kyg_C 14 EEIWKKAEEAVNEVKRQAMT 33 (38)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999753
No 7
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=16.77 E-value=3.4e+02 Score=20.38 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Q psy2089 39 DMILKLYKALLRESSKFPAYNYRMYFLRRTRE 70 (216)
Q Consensus 39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIRd 70 (216)
+.|...|+.+.+.|..-.|+.-++.+..-+.+
T Consensus 95 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~e 126 (159)
T 4am5_A 95 REARALYQEGAAYAASVGDFPSKNLFEELMGD 126 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67889999999999988887777777755544
No 8
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=14.48 E-value=3e+02 Score=20.28 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=21.9
Q ss_pred hcCCCCcccccccCCCcccCcccHHHHHHHHHHHHHHH
Q psy2089 15 MGDKLPNVECLALSTPVTHMSVSKDMILKLYKALLRES 52 (216)
Q Consensus 15 ~~~~lp~~~~~~~S~~~~~MS~SRkqVLsLYRqLLRaA 52 (216)
-||+||...-++- ....+|..|..-|+.|-..+
T Consensus 34 pG~~LPser~La~-----~~gVSr~tVReAl~~L~~eG 66 (134)
T 4ham_A 34 EGEKILSIREFAS-----RIGVNPNTVSKAYQELERQE 66 (134)
T ss_dssp TTCEECCHHHHHH-----HHTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHH-----HHCCCHHHHHHHHHHHHHCC
Confidence 3566665443333 23338999999999998875
No 9
>3jqo_C TRAN protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli} PDB: 2ofq_B
Probab=11.84 E-value=68 Score=20.38 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=5.2
Q ss_pred cCCCCCCcce
Q psy2089 196 LPPESQRGAY 205 (216)
Q Consensus 196 ~~~~~~~~~~ 205 (216)
+|+|-|||.|
T Consensus 23 iP~eiq~g~~ 32 (34)
T 3jqo_C 23 IPVDTQGGRN 32 (34)
T ss_dssp CCCCCC----
T ss_pred cCHhHhcccc
Confidence 7889999876
No 10
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=10.94 E-value=62 Score=28.70 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=42.6
Q ss_pred CccccccchhHHhhc-CCCCcccccccCCCcccCcc-cHHHHHHHHH---HHHHHHc----CCCCcchHHHHHHHHHHHH
Q psy2089 2 GLIPAQGRFYAKQMG-DKLPNVECLALSTPVTHMSV-SKDMILKLYK---ALLRESS----KFPAYNYRMYFLRRTREKF 72 (216)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~lp~~~~~~~S~~~~~MS~-SRkqVLsLYR---qLLRaAR----kFpdYNfReYfrRrIRdeF 72 (216)
|+-|.|=.-|+--+| |.+|+. |-.++ +..++++-|. .++.... +.+. +++ + +.+|+.|
T Consensus 216 gl~~~q~id~~~L~G~D~~~gi---------pGiG~KtA~kll~~~gsle~i~~~~~~~k~~~~~-~~~-~--~~~r~l~ 282 (341)
T 3q8k_A 216 GLNQEQFVDLCILLGSDYCESI---------RGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPE-NWL-H--KEAHQLF 282 (341)
T ss_dssp TCCHHHHHHHHHHHCCSSSCCC---------TTCCHHHHHHHHHHHCSHHHHHHHSCTTTSCCCT-TCC-H--HHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCCCC---------CCccHHHHHHHHHHcCCHHHHHHHHHhcCCCCCc-ccc-h--HHHHHHh
Confidence 566777777888999 999864 22232 3345555554 2333332 2332 455 2 3588888
Q ss_pred hhccCC------------CCHHHHHHHH
Q psy2089 73 QSNKNV------------DNNEQISLLY 88 (216)
Q Consensus 73 ReNK~~------------TDPekIe~LL 88 (216)
-|.++ -|.+.+.+++
T Consensus 283 -l~~~V~~~~~~~l~~~~pd~~~l~~fl 309 (341)
T 3q8k_A 283 -LEPEVLDPESVELKWSEPNEEELIKFM 309 (341)
T ss_dssp -HSCCCCCTTTSCCCCCCCCHHHHHHHH
T ss_pred -CCCCCCCCcccccCCCCCCHHHHHHHH
Confidence 55444 3567888877
Done!