Query psy2089
Match_columns 216
No_of_seqs 122 out of 452
Neff 3.7
Searched_HMMs 13730
Date Sat Aug 17 00:00:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6fa_ d.14.1.2 (A:) RNase P 57.5 3.4 0.00025 29.0 2.9 23 55-77 53-75 (113)
2 d1d6ta_ d.14.1.2 (A:) RNase P 46.4 2.6 0.00019 29.8 0.7 20 58-77 56-75 (117)
3 d1kxpd3 a.126.1.1 (D:405-473) 35.4 32 0.0023 23.2 4.9 38 53-91 4-41 (69)
4 d1nz0a_ d.14.1.2 (A:) RNase P 25.0 14 0.001 25.4 1.6 19 59-77 50-68 (109)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 23.0 23 0.0017 20.3 2.0 21 157-183 4-24 (30)
6 d1e3ha1 a.4.9.1 (A:263-345) Po 16.0 1.4E+02 0.01 19.2 7.7 54 39-92 7-63 (83)
7 d1nf4a_ a.25.1.1 (A:) Bacterio 12.8 85 0.0062 22.2 3.6 32 39-70 97-128 (169)
8 d1jgca_ a.25.1.1 (A:) Bacterio 11.8 2.2E+02 0.016 19.6 5.8 31 39-69 95-125 (160)
9 d1f5na1 a.114.1.1 (A:284-583) 9.7 1.9E+02 0.014 21.1 4.9 59 18-76 25-89 (300)
10 d2bida_ f.1.4.1 (A:) Proapopto 8.6 21 0.0016 28.4 -1.3 29 43-71 167-195 (197)
No 1
>d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId: 1423]}
Probab=57.50 E-value=3.4 Score=29.02 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=15.2
Q ss_pred CCCcchHHHHHHHHHHHHhhccC
Q psy2089 55 FPAYNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 55 FpdYNfReYfrRrIRdeFReNK~ 77 (216)
+.+--.|+.++|++|+.||.+.+
T Consensus 53 vg~AV~RNriKR~lRe~~r~~~~ 75 (113)
T d1a6fa_ 53 IGNAVMRNRIKRLIRQAFLEEKE 75 (113)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHhhc
Confidence 33334677777777777777765
No 2
>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus [TaxId: 1280]}
Probab=46.42 E-value=2.6 Score=29.82 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHHHHhhccC
Q psy2089 58 YNYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 58 YNfReYfrRrIRdeFReNK~ 77 (216)
-..|+.++|++|+.||.+.+
T Consensus 56 AV~RNriKR~lRe~~R~~~~ 75 (117)
T d1d6ta_ 56 AVLRNKIKRAIRENFKVHKS 75 (117)
T ss_dssp TTHHHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHHHHHHhhhc
Confidence 34677777777777777665
No 3
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.44 E-value=32 Score=23.25 Aligned_cols=38 Identities=11% Similarity=0.298 Sum_probs=30.5
Q ss_pred cCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q psy2089 53 SKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEG 91 (216)
Q Consensus 53 RkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkG 91 (216)
.++..++|-+|. .+..+.+|.......|++++++.++-
T Consensus 4 ~dYse~tFte~k-kkL~e~lr~k~P~as~~~l~~mVekr 41 (69)
T d1kxpd3 4 ADYSENTFTEYK-KKLAERLKAKLPDATPKELAKLVNKR 41 (69)
T ss_dssp TTTTTSCHHHHH-HHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred hhhhhccHHHHH-HHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 456667787754 58999999999999999999988753
No 4
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=24.96 E-value=14 Score=25.42 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHHhhccC
Q psy2089 59 NYRMYFLRRTREKFQSNKN 77 (216)
Q Consensus 59 NfReYfrRrIRdeFReNK~ 77 (216)
..|+.++|++|+.||.+.+
T Consensus 50 V~RNriKR~lRe~~r~~~~ 68 (109)
T d1nz0a_ 50 TRRNKLKRWVREIFRRNKG 68 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4677778888888877765
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.95 E-value=23 Score=20.28 Aligned_cols=21 Identities=43% Similarity=0.798 Sum_probs=14.1
Q ss_pred HHHhhchhhhhhhhhHHHHHHHHHHHh
Q psy2089 157 IQHVSDMDCYLFNIGLIKLIFFLTWFR 183 (216)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (216)
|..|-+.+| +|.|.||..+||
T Consensus 4 i~yv~ifac------~i~lfffaiffr 24 (30)
T d2axtt1 4 ITYVFIFAC------IIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHH------HHHHHHHHHHTS
T ss_pred eehHHHHHH------HHHHHHHHHHhc
Confidence 344556666 567778887776
No 6
>d1e3ha1 a.4.9.1 (A:263-345) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Streptomyces antibioticus [TaxId: 1890]}
Probab=16.04 E-value=1.4e+02 Score=19.22 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCCCCH---HHHHHHHHHHH
Q psy2089 39 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNN---EQISLLYNEGL 92 (216)
Q Consensus 39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~TDP---ekIe~LLkkGe 92 (216)
..|-.++..-+..|-..++..-|+-....++++-.++-...++ ..|...+.+-+
T Consensus 7 ~~v~~~~~~~l~~A~~~~~K~eR~~al~~lk~~~~e~~~~~~~~~~~~i~~~~~~l~ 63 (83)
T d1e3ha1 7 EALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEGREKEISAAYRALT 63 (83)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 5688999999999999999999999999888877666655444 34555544443
No 7
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=12.82 E-value=85 Score=22.19 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Q psy2089 39 DMILKLYKALLRESSKFPAYNYRMYFLRRTRE 70 (216)
Q Consensus 39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIRd 70 (216)
..+...|+++++.|..-.|+.-++.+.+-+.+
T Consensus 97 ~~~~~~y~~~~~~A~~~~D~~t~~~l~~il~e 128 (169)
T d1nf4a_ 97 DATIEAYSQFLKVCKEQGDIVTARLFERIIEE 128 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778888888888877776666666654444
No 8
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=11.80 E-value=2.2e+02 Score=19.57 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q psy2089 39 DMILKLYKALLRESSKFPAYNYRMYFLRRTR 69 (216)
Q Consensus 39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIR 69 (216)
..++..|++++..|..-.|+--++.+.+-++
T Consensus 95 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~ 125 (160)
T d1jgca_ 95 HDALKLYREARDYCAEVGDIVSKNIFESLIT 125 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4555666666666655554444444443333
No 9
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.67 E-value=1.9e+02 Score=21.13 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=39.6
Q ss_pred CCCcccccccCCCcccCcccHHHHHHHHHHHHHHHcCCCCcc------hHHHHHHHHHHHHhhcc
Q psy2089 18 KLPNVECLALSTPVTHMSVSKDMILKLYKALLRESSKFPAYN------YRMYFLRRTREKFQSNK 76 (216)
Q Consensus 18 ~lp~~~~~~~S~~~~~MS~SRkqVLsLYRqLLRaARkFpdYN------fReYfrRrIRdeFReNK 76 (216)
.+|+....|-++.-..-...-...+..|...+...-+.|..+ .+.-+...+.+.|....
T Consensus 25 ~~P~i~~~~~~~~~~e~~~a~e~a~~~Y~~~m~~~~~~~~~~~eel~~~h~~~~~~a~~~f~~~~ 89 (300)
T d1f5na1 25 DLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSS 89 (300)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 599999999886554333344688999999997665655322 33445667777776643
No 10
>d2bida_ f.1.4.1 (A:) Proapoptotic molecule Bid {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=21 Score=28.40 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHH
Q psy2089 43 KLYKALLRESSKFPAYNYRMYFLRRTREK 71 (216)
Q Consensus 43 sLYRqLLRaARkFpdYNfReYfrRrIRde 71 (216)
+|.|...++.-.|-+.|++.|.++-+|.+
T Consensus 167 sLLr~Vf~TTvnfInqnl~~YvrnL~Rn~ 195 (197)
T d2bida_ 167 SLLRDVFHTTVNFINQNLRTYVRSLARNG 195 (197)
T ss_dssp TCHHHHHHHHHHHHHTTTHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58899999999999999999999998865
Done!