RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2089
         (216 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 53/200 (26%)

Query: 24  CLALSTPVTHMSVSKDMILKLYKALLRESSKFPAY-------NYRMYF--LRRTREKFQS 74
            +    P    S S      L++A+   +++           N   YF  LR   + +  
Sbjct: 130 RIMAKRPFDKKSNSA-----LFRAVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHV 182

Query: 75  NKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTEQTALGCSL 134
                    +  L     + L  L R  L ++      L I   ++N  +T         
Sbjct: 183 L--------VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT--------- 225

Query: 135 LGIPTKSYLSTMFSPRQISKSFIQHVSDMDCYLFNIGLIKLIFFLTWFRLQFSTPSSIII 194
              P K YL +   P          +S   C L  IG+I+L  ++   +L   TP  +  
Sbjct: 226 ---PDKDYLLS--IP----------IS---CPL--IGVIQLAHYVVTAKLLGFTPGELRS 265

Query: 195 ILPPESQRGAYVISAEIIAA 214
            L   +     +++A  IA 
Sbjct: 266 YLKGATGHSQGLVTAVAIAE 285



 Score = 33.9 bits (77), Expect = 0.035
 Identities = 35/224 (15%), Positives = 62/224 (27%), Gaps = 76/224 (33%)

Query: 47  ALLRESSK----FPAYNYRMYFLRR-TREKFQS-----NKNVDNNEQISL-LYN------ 89
           ++L +S +     P+    M  +   T+E+ Q      N ++   +Q+ + L N      
Sbjct: 322 SILEDSLENNEGVPSP---MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378

Query: 90  --------EGLK-ELEVLKRQVLISQ---LFKPDKLVIETQ------------MQNSKDT 125
                    GL   L   K    + Q    F   KL    +            +  + D 
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438

Query: 126 EQTALGCSLLGIPTKSYLSTMFSP------RQISKSFIQHVSDMDCYLFNIGLIKLIFFL 179
               L  + +    K     ++        R +S S  + + D             I  L
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC------------IIRL 486

Query: 180 T--WFRLQFSTPSSIIIILPPESQ------------RGAYVISA 209
              W        + I+   P  +              G  VI A
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 35/258 (13%), Positives = 64/258 (24%), Gaps = 101/258 (39%)

Query: 45  YKAL---LRESSKFPAYNYRMYFLRRTR-----EKFQSNKNVDNNEQISLLYNEGLKELE 96
           YK L   ++   + P+   RMY  +R R     + F +  NV   +    L  + L EL 
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYLKL-RQALLELR 148

Query: 97  ----------------VLKRQVL-----------------ISQLFKPDKLVIETQMQN-- 121
                            +   V                  +     P+ ++    +Q   
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLL 206

Query: 122 -SKDTEQTALGCSLLGIP-----TKSYLSTMFSPRQISKSFI--QHVSDMDCY-LFNIG- 171
              D   T+       I       ++ L  +   +      +   +V +   +  FN+  
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 172 --LI--------------------------------KLIFFLTWFRLQFSTPSSIIIILP 197
             L+                                     L +   +          LP
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-------LP 319

Query: 198 PESQRGA-YVISAEIIAA 214
            E        +S  IIA 
Sbjct: 320 REVLTTNPRRLS--IIAE 335


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.9 bits (79), Expect = 0.008
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 11/35 (31%)

Query: 90  EGLKELEV-LKRQVLISQLFKPDK---LVIETQMQ 120
           + LK+L+  LK       L+  D    L I+  M+
Sbjct: 20  QALKKLQASLK-------LYADDSAPALAIKATME 47



 Score = 26.8 bits (58), Expect = 4.2
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 6/24 (25%)

Query: 35 SVSK-DMILKLYKALLRESSKFPA 57
          ++ K    LKLY     +S+  PA
Sbjct: 21 ALKKLQASLKLYAD---DSA--PA 39


>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
           module, G-protein coupled receptor, signaling; 2.38A
           {Homo sapiens} PDB: 4f12_A*
          Length = 433

 Score = 27.6 bits (61), Expect = 3.1
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 120 QNSKDTEQTALGCSLLGIPTKSYLST--MFSPRQISKSFIQHV-SDMDCYLFNIGLIKLI 176
                T   A       +   S+ +T  + + ++    F + V SD      N  ++KL+
Sbjct: 93  VCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSD---NAVNPAILKLL 149

Query: 177 FFLTW 181
               W
Sbjct: 150 KHYQW 154


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,022,817
Number of extensions: 159676
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 8
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)