BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2090
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 193/332 (58%), Gaps = 31/332 (9%)
Query: 68 LLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKEL 127
L D V+ + LV P DGVV+ + +Y+++R+V+ + C+FRYGRE+ ++LGL F+K+L
Sbjct: 22 LGKRDFVDHIDLVEPV--DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDL 79
Query: 128 YLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEP 183
++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S PGP++TG+
Sbjct: 80 FVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKA 139
Query: 184 CGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLEL 243
CGV Y VK F EN ++ H+R++V L IRK+QYAP + G QP + F++S L L
Sbjct: 140 CGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHL 199
Query: 244 EVTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQ 282
E +LDK+ + + V+Q D+ LF Q++ V E
Sbjct: 200 EASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEAD 259
Query: 283 EGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFG 342
+ + P S+ KV LTP L +N+ +RGLALDG+LK+E+ LASSTLL ++ G
Sbjct: 260 DT--VAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTN-LASSTLLREGANREILG 316
Query: 343 IVVSYMVKVKXXXXXXXXXXXXXXPFILMHPK 374
I+VSY VKVK PF LMHPK
Sbjct: 317 IIVSYKVKVK-LVVSRGGDVAVELPFTLMHPK 347
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 192/335 (57%), Gaps = 37/335 (11%)
Query: 72 DLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 131
D V+ + LV P DGVV+ + +Y+++R+V+ + C+FRYGRE+ ++LGL F+K+L++A+
Sbjct: 26 DFVDHIDLVEPV--DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVAN 83
Query: 132 EQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVT 187
Q +P + + LT++Q+ L+KKLG AYPFTF I P P S PGP++TG+ CGV
Sbjct: 84 VQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVD 143
Query: 188 YYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTL 247
Y VK F EN ++ H+R++V L IRK+QYAP + G QP + F++S L LE +L
Sbjct: 144 YEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASL 203
Query: 248 DKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQEGCP 286
DK+ + + V+Q D+ LF Q++ V E +
Sbjct: 204 DKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDT-- 261
Query: 287 IQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIVVS 346
+ P S+ KV LTP L +N+ +RGLALDG+LK+E+ LASSTLL ++ GI+VS
Sbjct: 262 VAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTN-LASSTLLREGANREILGIIVS 320
Query: 347 YMVKVKXXXXX-------XXXXXXXXXPFILMHPK 374
Y VKVK PF LMHPK
Sbjct: 321 YKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 355
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 193/339 (56%), Gaps = 37/339 (10%)
Query: 68 LLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKEL 127
L D V+ + LV P DGVV+ + +Y+++R+V+ + C+FRYGRE+ ++LGL F+K+L
Sbjct: 22 LGKRDFVDHIDLVEPV--DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDL 79
Query: 128 YLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEP 183
++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S PGP++TG+
Sbjct: 80 FVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKA 139
Query: 184 CGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLEL 243
CGV Y VK F EN ++ H+R++V L IRK+QYAP + G QP + F++S L L
Sbjct: 140 CGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHL 199
Query: 244 EVTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQ 282
E +LDK+ + + V+Q D+ LF Q++ V E
Sbjct: 200 EASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEAD 259
Query: 283 EGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFG 342
+ + P S+ KV LTP L +N+ +RGLALDG+LK+E+ LASSTLL ++ G
Sbjct: 260 DT--VAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTN-LASSTLLREGANREILG 316
Query: 343 IVVSYMVKVKXXXXX-------XXXXXXXXXPFILMHPK 374
I+VSY VKVK PF LMHPK
Sbjct: 317 IIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 355
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 193/339 (56%), Gaps = 37/339 (10%)
Query: 68 LLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKEL 127
L D V+ + LV P DGVV+ + +Y+++R+V+ + C+FRYGRE+ +++GL F+K+L
Sbjct: 22 LGKRDFVDHIDLVEPV--DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVVGLTFRKDL 79
Query: 128 YLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEP 183
++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S PGP++TG+
Sbjct: 80 FVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKA 139
Query: 184 CGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLEL 243
CGV Y VK F EN ++ H+R++V L IRK+QYAP + G QP + F++S L L
Sbjct: 140 CGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHL 199
Query: 244 EVTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQ 282
E +LDK+ + + V+Q D+ LF Q++ V E
Sbjct: 200 EASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEAD 259
Query: 283 EGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFG 342
+ + P S+ KV LTP L +N+ +RGLALDG+LK+E+ LASSTLL ++ G
Sbjct: 260 DT--VAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTN-LASSTLLREGANREILG 316
Query: 343 IVVSYMVKVKXXXXX-------XXXXXXXXXPFILMHPK 374
I+VSY VKVK PF LMHPK
Sbjct: 317 IIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 355
>pdb|3P2D|A Chain A, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
pdb|3P2D|B Chain B, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
Length = 393
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 192/332 (57%), Gaps = 31/332 (9%)
Query: 68 LLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKEL 127
L D V+ L V P DGVV+ + DY++DRKVF + C+FRYGRE+ ++LGL+F+K+L
Sbjct: 23 LGKRDFVDHLDKVDPV--DGVVLVDPDYLKDRKVFVTLTCAFRYGREDLDVLGLSFRKDL 80
Query: 128 YLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEP 183
++A+ Q +P + T++Q+ LL+KLG A+PF F I P S PGP++TG+
Sbjct: 81 FIANYQAFPPTPNPPRPPTRLQERLLRKLGQHAHPFFFTIPQNLPCSVTLQPGPEDTGKA 140
Query: 184 CGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLEL 243
CGV + ++ F ++ ++SH+R++V L IRK+Q+AP K G QP + F++S L L
Sbjct: 141 CGVDFEIRAFCAKSLEEKSHKRNSVRLVIRKVQFAPEKPGPQPSAETTRHFLMSDRSLHL 200
Query: 244 EVTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQ 282
E +LDK+ + + V+Q D+ LF Q++ V VE
Sbjct: 201 EASLDKELYYHGEPLNVNVHVTNNSTKTVKKIKVSVRQYADICLFSTAQYKCPVAQVEQD 260
Query: 283 EGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFG 342
+ + P S+ KV +TP L +N+ +RGLALDG+LK+E+ LASST++ K+ G
Sbjct: 261 DQ--VSPSSTFCKVYTITPLLSNNREKRGLALDGKLKHEDTN-LASSTIVKEGANKEVLG 317
Query: 343 IVVSYMVKVKXXXXXXXXXXXXXXPFILMHPK 374
I+VSY VKVK PF+LMHPK
Sbjct: 318 ILVSYRVKVK-LVVSRGGDVSVELPFVLMHPK 348
>pdb|1SUJ|A Chain A, X-Ray Crystal Structure Of Ambystoma Tigrinum Cone
Arrestin
Length = 392
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 190/335 (56%), Gaps = 39/335 (11%)
Query: 72 DLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 131
D V+ ++ V P DGVV+ + +Y++DRKVF + C+FRYGR++ +++G++F+K+LY +
Sbjct: 25 DFVDHVEHVEPV--DGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSFRKDLYSLA 82
Query: 132 EQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVT 187
Q+YP K+ LT +Q+ L+KKLG AYPF F + P S PGPD+TG+ CGV
Sbjct: 83 TQVYPPETKE--PLTPLQEKLMKKLGAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVD 140
Query: 188 YYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTL 247
+ VK F EN ++ H+R++V L IRK+Q+AP+ G P T + + FMLS L LE +L
Sbjct: 141 FEVKAFCAENLEEKIHKRNSVQLVIRKVQFAPANLGVAPKTEITRQFMLSDRPLHLEASL 200
Query: 248 DKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQEGCP 286
DK+ + + +V+Q DVVLF ++ +V ET +
Sbjct: 201 DKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKYVKTVCAEETNDT-- 258
Query: 287 IQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIVVS 346
+ S+L K +TP L +N+ +RGLALDG+LK+E+ LAS+T++ K+ GI+VS
Sbjct: 259 VAANSTLSKTFSVTPMLANNREKRGLALDGKLKHEDTN-LASTTVIRPGMDKEVLGILVS 317
Query: 347 YMVKVKXXXXX-------XXXXXXXXXPFILMHPK 374
Y VKV P LMHPK
Sbjct: 318 YKVKVHLVVARGGILGDLTSSDVAVELPLTLMHPK 352
>pdb|1AYR|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 368
Score = 178 bits (451), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 178/336 (52%), Gaps = 39/336 (11%)
Query: 72 DLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 131
D ++ ++ V P DGVV+ + + ++ ++V+ + C+FRYG+E+ +++GL+F+++LY +
Sbjct: 30 DYIDHVERVEPV--DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQ 87
Query: 132 EQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVT 187
Q++P ++ T++Q+ L+KKLG YPF P S P P + G+ CGV
Sbjct: 88 VQVFPPVGASGAT-TRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVD 146
Query: 188 YYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELE 244
+ +K F + E D+ ++S+V L IRK+Q+AP G QP F +S L L
Sbjct: 147 FEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLA 206
Query: 245 VTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQE 283
V+L K+ + + +V+Q +VVL+ + + +V E QE
Sbjct: 207 VSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQE 266
Query: 284 GCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGI 343
P P SSL K + L P L +N+ RRG+ALDG++K+E+ LASST++ K GI
Sbjct: 267 KVP--PNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTN-LASSTIIKEGIDKTVMGI 323
Query: 344 VVSYMVKVKXXXX-----XXXXXXXXXXPFILMHPK 374
+VSY +KVK PF LMHP+
Sbjct: 324 LVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 359
>pdb|3UGU|A Chain A, Crystal Structure Of P44 (Splice Variant Of Visual
Arrestin)
Length = 380
Score = 177 bits (450), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 178/336 (52%), Gaps = 39/336 (11%)
Query: 72 DLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 131
D ++ ++ V P DGVV+ + + ++ ++V+ + C+FRYG+E+ +++GL+F+++LY +
Sbjct: 40 DYIDHVERVEPV--DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQ 97
Query: 132 EQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVT 187
Q++P ++ T++Q+ L+KKLG YPF P S P P + G+ CGV
Sbjct: 98 VQVFPPVGASGAT-TRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVD 156
Query: 188 YYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELE 244
+ +K F + E D+ ++S+V L IRK+Q+AP G QP F +S L L
Sbjct: 157 FEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLA 216
Query: 245 VTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQE 283
V+L K+ + + +V+Q +VVL+ + + +V E QE
Sbjct: 217 VSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQE 276
Query: 284 GCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGI 343
P P SSL K + L P L +N+ RRG+ALDG++K+E+ LASST++ K GI
Sbjct: 277 KVP--PNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTN-LASSTIIKEGIDKTVMGI 333
Query: 344 VVSYMVKVKXXXX-----XXXXXXXXXXPFILMHPK 374
+VSY +KVK PF LMHP+
Sbjct: 334 LVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 369
>pdb|1CF1|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 404
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 178/336 (52%), Gaps = 39/336 (11%)
Query: 72 DLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 131
D ++ ++ V P DGVV+ + + ++ ++V+ + C+FRYG+E+ +++GL+F+++LY +
Sbjct: 30 DYIDHVERVEPV--DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQ 87
Query: 132 EQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVT 187
Q++P ++ T++Q+ L+KKLG YPF P S P P + G+ CGV
Sbjct: 88 VQVFPPVGASGAT-TRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVD 146
Query: 188 YYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELE 244
+ +K F + E D+ ++S+V L IRK+Q+AP G QP F +S L L
Sbjct: 147 FEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLA 206
Query: 245 VTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQE 283
V+L K+ + + +V+Q +VVL+ + + +V E QE
Sbjct: 207 VSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQE 266
Query: 284 GCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGI 343
P P SSL K + L P L +N+ RRG+ALDG++K+E+ LASST++ K GI
Sbjct: 267 KVP--PNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTN-LASSTIIKEGIDKTVMGI 323
Query: 344 VVSYMVKVKXXXX-----XXXXXXXXXXPFILMHPK 374
+VSY +KVK PF LMHP+
Sbjct: 324 LVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 359
>pdb|3UGX|A Chain A, Crystal Structure Of Visual Arrestin
pdb|3UGX|B Chain B, Crystal Structure Of Visual Arrestin
pdb|3UGX|C Chain C, Crystal Structure Of Visual Arrestin
pdb|3UGX|D Chain D, Crystal Structure Of Visual Arrestin
Length = 414
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 178/336 (52%), Gaps = 39/336 (11%)
Query: 72 DLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 131
D ++ ++ V P DGVV+ + + ++ ++V+ + C+FRYG+E+ +++GL+F+++LY +
Sbjct: 40 DYIDHVERVEPV--DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQ 97
Query: 132 EQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVT 187
Q++P ++ T++Q+ L+KKLG YPF P S P P + G+ CGV
Sbjct: 98 VQVFPPVGASGAT-TRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVD 156
Query: 188 YYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELE 244
+ +K F + E D+ ++S+V L IRK+Q+AP G QP F +S L L
Sbjct: 157 FEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLA 216
Query: 245 VTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQE 283
V+L K+ + + +V+Q +VVL+ + + +V E QE
Sbjct: 217 VSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQE 276
Query: 284 GCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGI 343
P P SSL K + L P L +N+ RRG+ALDG++K+E+ LASST++ K GI
Sbjct: 277 KVP--PNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTN-LASSTIIKEGIDKTVMGI 333
Query: 344 VVSYMVKVKXXXX-----XXXXXXXXXXPFILMHPK 374
+VSY +KVK PF LMHP+
Sbjct: 334 LVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 369
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 200 DRSHRRSTVALGIRKIQYAPSKN-------GRQPCTVVRKDFMLSPGDLELEVTLDKQFR 252
+R HR + V +G+ ++Y P +N GR+ T++ + + +++++ K F+
Sbjct: 820 ERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLTPRMHVQVKLDTGKTFQ 879
Query: 253 SVMAMVQQGVDVVLFQNG 270
+V+ V++ F NG
Sbjct: 880 AVIRF-DTDVELTYFHNG 896
>pdb|2KBO|A Chain A, Structure, Interaction, And Real-Time Monitoring Of The
Enzymatic Reaction Of Wild Type Apobec3g
Length = 194
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 256 AMVQQGVDVVLFQNGQFRHSVDCVETQEGCPIQPGSSLQK 295
+ + G + + +F+H D +GCP QP L +
Sbjct: 137 TLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDE 176
>pdb|3E1U|A Chain A, The Crystal Structure Of The Anti-Viral Apobec3g Catalytic
Domain
pdb|3IQS|A Chain A, Crystal Structure Of The Anti-Viral Apobec3g Catalytic
Domain
Length = 189
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 256 AMVQQGVDVVLFQNGQFRHSVDCVETQEGCPIQPGSSLQK 295
+ + G + + +F+H D +GCP QP L +
Sbjct: 136 TLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDE 175
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 41 LIVLKNLKLGVLESFGNQMVRNLKVLELLSEDLVEFLQLVFPT------ISDGVVVFEED 94
LI+ N+ V ++G N +S D F LVF +S +VFEE
Sbjct: 224 LILPNNIAASVARAYG--ASDNGDGTYTISCDTSRFKPLVFSINGASFQVSPDSLVFEE- 280
Query: 95 YIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPR 137
GQ + F YG + I+G F K Y+ Q P
Sbjct: 281 ------FQGQCIAGFGYGNWDFAIIGDTFLKNNYVVFNQGVPE 317
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 200 DRSHRRSTVALGIRKIQYAPSKN-------GRQPCTVVRKDFMLSPGDLELEVTLDKQFR 252
+R HR + V +G+ ++Y P +N G++ T++ + + +++++ K F+
Sbjct: 800 ERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQ 859
Query: 253 SVMAMVQQGVDVVLFQNG 270
+VM V++ F NG
Sbjct: 860 AVMRF-DTDVELTYFLNG 876
>pdb|3BVG|A Chain A, Manipulating The Coupled Folding And Binding Process
Drives Affinity Maturation In A Protein-Protein Complex
Length = 237
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 128 YLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPSPGPDETGEPCGVT 187
+LA + IY S+K+ + K++ LL + K Y DE + G
Sbjct: 44 FLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYK---------------DEVVDVYGSN 88
Query: 188 YYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTL 247
YYV + + H ++ + GI K + NG +VR + + EV
Sbjct: 89 YYVNCYFSSKDASTWHGKTCMYGGITKHEGNHFDNGNLQNVLVRV-YENKRNTISFEVQT 147
Query: 248 DKQFRSVMA 256
DK +SV A
Sbjct: 148 DK--KSVTA 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,983,379
Number of Sequences: 62578
Number of extensions: 407351
Number of successful extensions: 1153
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 18
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)