Query psy2090
Match_columns 374
No_of_seqs 141 out of 207
Neff 4.1
Searched_HMMs 46136
Date Sat Aug 17 00:02:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3865|consensus 100.0 6E-142 1E-146 1029.5 29.7 316 55-374 8-349 (402)
2 KOG3780|consensus 99.4 1.6E-11 3.4E-16 121.8 18.8 176 155-372 103-317 (427)
3 PF00339 Arrestin_N: Arrestin 99.2 1.9E-10 4.2E-15 96.8 11.5 132 66-217 3-145 (149)
4 PF02752 Arrestin_C: Arrestin 98.6 8.1E-07 1.7E-11 73.3 11.1 114 229-373 10-134 (136)
5 PF13002 LDB19: Arrestin_N ter 94.8 0.036 7.8E-07 52.2 4.4 37 155-194 48-86 (191)
6 PF03643 Vps26: Vacuolar prote 94.0 6.1 0.00013 39.1 18.1 180 81-301 39-246 (275)
7 PF07070 Spo0M: SpoOM protein; 85.2 23 0.00049 34.2 13.0 87 81-191 28-116 (218)
8 PF08737 Rgp1: Rgp1; InterPro 82.7 2.9 6.2E-05 43.4 6.3 55 159-218 121-175 (415)
9 KOG3063|consensus 61.5 1.5E+02 0.0033 29.7 11.9 117 158-292 103-244 (301)
10 PF00339 Arrestin_N: Arrestin 38.0 49 0.0011 27.6 4.0 55 287-373 90-145 (149)
11 cd01515 Arch_FBPase_1 Archaeal 34.8 30 0.00065 32.9 2.5 49 77-131 78-128 (257)
12 PF04426 Bul1_C: Bul1 C termin 31.1 66 0.0014 32.0 4.2 34 338-371 237-270 (272)
13 COG5554 NifU Nitrogen fixation 30.3 64 0.0014 25.9 3.2 37 61-110 9-45 (69)
14 PRK12676 bifunctional inositol 29.2 37 0.00081 32.4 2.1 51 76-132 82-132 (263)
15 PF08737 Rgp1: Rgp1; InterPro 28.1 2.2E+02 0.0047 29.8 7.6 39 325-371 132-172 (415)
16 cd01639 IMPase IMPase, inosito 27.7 37 0.0008 31.8 1.8 50 77-132 77-126 (244)
17 TIGR01331 bisphos_cysQ 3'(2'), 24.5 43 0.00094 31.6 1.6 48 78-131 79-126 (249)
18 cd01641 Bacterial_IMPase_like_ 24.3 54 0.0012 30.9 2.2 48 79-132 76-123 (248)
19 PRK10757 inositol monophosphat 23.1 52 0.0011 31.5 1.9 48 78-131 81-128 (267)
20 cd01517 PAP_phosphatase PAP-ph 23.0 65 0.0014 30.9 2.5 48 77-131 74-128 (274)
No 1
>KOG3865|consensus
Probab=100.00 E-value=6.2e-142 Score=1029.48 Aligned_cols=316 Identities=51% Similarity=0.887 Sum_probs=307.6
Q ss_pred hccccccceEEEEEcCcceEeccCcccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCcccchheeeeeeee
Q psy2090 55 FGNQMVRNLKVLELLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQI 134 (374)
Q Consensus 55 ~~~~~~~~~~tvYLgkRDfvDh~~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~~Qv 134 (374)
|-+...|++.|+||||||||||+|.|||| ||||+|||||+|+|||||||+|||||||||+|||||+||||||+++.|+
T Consensus 8 FKK~SpNgkiT~YLgkRDFvDhvd~vdPv--DGvVlvDpeYlK~RKvfv~L~caFRYGREDldVlGLtFrKdL~~~~~Qv 85 (402)
T KOG3865|consen 8 FKKASPNGKITVYLGKRDFVDHVDQVDPV--DGVVLVDPEYLKDRKVFVQLTCAFRYGREDLDVLGLTFRKDLYLATVQV 85 (402)
T ss_pred eEecCCCCcEEEEeccccccccccccccc--ceeEEEChHHhccceEEEEEEeeeecccccceeeeeEEEeeeEEEEEEe
Confidence 56666777888999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcHHHHHHHhhcCCCccceEEecCCCCCCC----CCCCCCCCcceEEEEEEEEEcCCCccCCCccceeEe
Q psy2090 135 YPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVAL 210 (374)
Q Consensus 135 yPp~~~~~~~lT~lQerLlkKLG~nAyPF~f~lP~nlP~S----Pgp~d~GKpCGVdYeVKaf~a~~~deK~hKRnsVrL 210 (374)
|||.+ ...+||+|||||+||||+|||||+|++|+|+||| |||+|+|||||||||||||||++.|||+||||+|||
T Consensus 86 ~Pp~~-~~~plT~lQErLlkKLG~nAyPF~f~~pp~~P~SVtLQp~p~D~gKpcGVdyevkaF~~~s~edk~hKr~sVrL 164 (402)
T KOG3865|consen 86 YPPPE-DSRPLTRLQERLLKKLGSNAYPFTFEFPPNLPCSVTLQPGPEDTGKPCGVDYEVKAFVADSEEDKIHKRNSVRL 164 (402)
T ss_pred eCCCc-CCCcccHHHHHHHHHhCCCCCceEEeCCCCCCceEEeccCCccCCCcccceEEEEEEecCCcccccccccceee
Confidence 99954 4567999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCCCeeEEeecceecCCceEEEEEecccc---------------------eEEEEEEEEeeEEEEEeC
Q psy2090 211 GIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQF---------------------RSVMAMVQQGVDVVLFQN 269 (374)
Q Consensus 211 ~IRKIqyAP~~~g~~P~aevsK~F~mS~gpL~LEasLDKei---------------------KkIKV~V~Q~adV~lfs~ 269 (374)
+|||+||||.++|+||+++++|+|+||+|+||||||||||+ ||||++|+|+||||||||
T Consensus 165 ~IRKvqyAP~~~GpqP~~~v~k~FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~ 244 (402)
T KOG3865|consen 165 VIRKVQYAPLEPGPQPSAEVSKQFLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFST 244 (402)
T ss_pred eeeeeeecCCCCCCCchhHhhHhhccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEec
Confidence 99999999999999999999999999999999999999997 999999999999999999
Q ss_pred CeEEEEEEEeeccCCCccCCCCeEEEEEEEeecccCCcccceeeecccccccccccccceeeecCCCCCcceEEEEEEEE
Q psy2090 270 GQFRHSVDCVETQEGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIVVSYMV 349 (374)
Q Consensus 270 ~~yk~~Va~~E~~eGP~V~pgstl~k~~~L~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIiVSY~V 349 (374)
+||+|+||.+|++||++|+||+||+|+|+|+|+|+||++||||||||+|||||| |||||||++++.++|++||+|||+|
T Consensus 245 aqy~~~VA~~E~~eGc~v~Pgstl~Kvf~l~PllanN~dkrGlALDG~lKhEDt-nLASSTii~~~~~re~lGI~VsY~V 323 (402)
T KOG3865|consen 245 AQYKKPVAMEETDEGCPVAPGSTLSKVFTLTPLLANNKDKRGLALDGKLKHEDT-NLASSTIIREGADREALGILVSYKV 323 (402)
T ss_pred ccccceeeeeecccCCccCCCCeeeeeEEechhhhcCccccccccccccccccc-ccchhheecCCCCcceeEEEEEEEE
Confidence 999999999999999449999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEEEEEcc-CCceeeEEeeeeeeCCC
Q psy2090 350 KVKLYLGA-LGGELSAELPFILMHPK 374 (374)
Q Consensus 350 KVkL~vs~-~ggdv~~eLPF~LmhPk 374 (374)
||||++|+ .||||.+||||+|||||
T Consensus 324 kVkL~vs~ll~ge~~~ElPF~LmhPk 349 (402)
T KOG3865|consen 324 KVKLVVSRLLGGEVAAELPFTLMHPK 349 (402)
T ss_pred EEEEEEecccCCceeeecceEEecCC
Confidence 99999995 78999999999999997
No 2
>KOG3780|consensus
Probab=99.40 E-value=1.6e-11 Score=121.76 Aligned_cols=176 Identities=26% Similarity=0.379 Sum_probs=131.6
Q ss_pred hcCCCccceEEecCCCCCCCCCCCCCCCcceEEEEEEEEEcCCCccCCCccc-eeEeeeeeeeecCCCCC---CCCe-eE
Q psy2090 155 KLGPKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRRS-TVALGIRKIQYAPSKNG---RQPC-TV 229 (374)
Q Consensus 155 KLG~nAyPF~f~lP~nlP~SPgp~d~GKpCGVdYeVKaf~a~~~deK~hKRn-sVrL~IRKIqyAP~~~g---~~P~-ae 229 (374)
--|.+.|||.|.||.++|+| ++|+.+.|+|.|||.+ |++||-| ..+..|.+++.-..+.. .+|. .+
T Consensus 103 ~~G~~~~pF~~~LP~~~P~S----feg~~G~irY~vk~~i-----dr~~~~~~~~~~~~~V~~~~~ln~~p~~~~~~~~~ 173 (427)
T KOG3780|consen 103 PPGNYEFPFSFTLPLNLPPS----FEGKFGHVRYFVKAEI-----DRPWKLNKKNRKPFTVIETVDLNSSPSLLEPIISK 173 (427)
T ss_pred CCCceEEeEeccCCCCCCCc----eeeCCceEEEEEEEEE-----ecCCCCCccceeeEEEecccccccCccccCcchhh
Confidence 46999999999999999999 9999999999999999 8899999 89999998886544421 2222 22
Q ss_pred Eeec---ceecCCceEEEEEecccc---------------------eEEEEEEEEeeEEEEEeCC-----e-EEEEEEEe
Q psy2090 230 VRKD---FMLSPGDLELEVTLDKQF---------------------RSVMAMVQQGVDVVLFQNG-----Q-FRHSVDCV 279 (374)
Q Consensus 230 vsK~---F~mS~gpL~LEasLDKei---------------------KkIKV~V~Q~adV~lfs~~-----~-yk~~Va~~ 279 (374)
.+|. ++++.|++.++++|+|.. +++++.+.|.+....++.+ + -.+.++..
T Consensus 174 ~~k~~~~~~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~n~ss~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (427)
T KOG3780|consen 174 ASKKLGCVCFSSGPVSLELTIPKTGYVPGETIPVTLEIENKSSRTIKKVKAKLIQKISYLAFSYGEHTKTKKSEKTLIKS 253 (427)
T ss_pred hhheeeEEEecCCcEEEEEEcccccCcCCccEEEEEEEecCCCCcceeeEEEEEEEEEEEeecCCccccceeeeeEEeee
Confidence 2333 458899999999999974 8999999999999998642 1 22222222
Q ss_pred eccCCCccCCCCe--EEEEEEEeecccCCcccceeeecccccccccccccceeeecCCCCCcceEEE-EEEEEEEEEEEc
Q psy2090 280 ETQEGCPIQPGSS--LQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIV-VSYMVKVKLYLG 356 (374)
Q Consensus 280 E~~eGP~V~pgst--l~k~~~L~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIi-VSY~VKVkL~vs 356 (374)
.... . |.++++ +.+.|.+++ .++| + ...+.+| |+|.++|.+.++
T Consensus 254 ~~~~-~-v~~~~~~~~~~~~~iP~------------------------~~Ps-~------~~~~~~i~v~y~l~v~~~~~ 300 (427)
T KOG3780|consen 254 RGSL-E-VAPRSEDKFEKELRIPP------------------------VPPS-I------LPDTPIIRVEYELKVTLKTS 300 (427)
T ss_pred cccc-c-cCCCCccccceEEEcCC------------------------CCCc-c------CCCCceEEEEEEEEEEEecC
Confidence 2222 3 888776 778888666 3332 2 2223566 999999999998
Q ss_pred cC-CceeeEEeeeeeeC
Q psy2090 357 AL-GGELSAELPFILMH 372 (374)
Q Consensus 357 ~~-ggdv~~eLPF~Lmh 372 (374)
++ ++++.+++|..+..
T Consensus 301 ~~~~~~~~l~~pi~igt 317 (427)
T KOG3780|consen 301 SLRHSELALELPIIIGT 317 (427)
T ss_pred cccccceeeeeceEEec
Confidence 53 67999999998863
No 3
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=99.20 E-value=1.9e-10 Score=96.78 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=92.6
Q ss_pred EEEcCcceEeccCcccccccCceEEEcc-cceeceeEEEEEeeeeecCCCcccccCcccchheeeeeeeeecCCC-CCCC
Q psy2090 66 LELLSEDLVEFLQLVFPTISDGVVVFEE-DYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSE-KQHS 143 (374)
Q Consensus 66 vYLgkRDfvDh~~~Vdpv~~dGVVlvDp-eylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~~QvyPp~~-~~~~ 143 (374)
++|-+.+-+-+-+ |.| .|.|.++. +-++-+.|.+++.+.-++.-.+....+-++++ |..+... ....
T Consensus 3 I~ld~~~~~y~~G--e~I--~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 71 (149)
T PF00339_consen 3 IELDNPKPVYFPG--EVI--SGKVVLELSKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRK-------QTTPKVQYSEKK 71 (149)
T ss_dssp EEES-SEEEEESS----E--EEEEEECTTT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEE-------EEESTSSS-SSS
T ss_pred EEECCCCCEECCC--CEE--EEEEEEEECCccceeEEEEEEEEEEEEEecCCCcceeeeee-------EEecccccccce
Confidence 4555555555566 899 99999984 44678999999999999988888888888876 4444443 2345
Q ss_pred CCcHHHHHHHhh--------cCCCccceEEecCCCCCCCCCCCCCCCcceEEEEEEEEEcCCCccCCCccc-eeEeeeee
Q psy2090 144 SLTKMQDCLLKK--------LGPKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRRS-TVALGIRK 214 (374)
Q Consensus 144 ~lT~lQerLlkK--------LG~nAyPF~f~lP~nlP~SPgp~d~GKpCGVdYeVKaf~a~~~deK~hKRn-sVrL~IRK 214 (374)
.+...+..|... -|.+.|||.|+||+++|+| .+|+.|.|.|.|+|.+ +++++++ ..+-.|++
T Consensus 72 ~~~~~~~~l~~~~~~~~~l~~G~~~fpF~f~LP~~lP~S----~~~~~g~I~Y~l~a~l-----~~~~~~~~~~~~~~~v 142 (149)
T PF00339_consen 72 EYFDHESQLWGSEDGPNILPPGEYEFPFEFQLPSNLPSS----FEGSHGSIRYKLKATL-----DRPGKKDHKAKREFTV 142 (149)
T ss_dssp SSSHHHHHHHHH--------C-TTEEEEEE---TTS--S----EEEE-SEEEEEEEEEE-----SSTTSE--CGGEEEEE
T ss_pred eeccceeEeeeeccceecccCCCEEEEEEEECCCCCCce----EeccCcCEEEEEEEEE-----ECCCCCCcEEEEEEEE
Confidence 788888889888 7999999999999999999 8899999999999999 4444444 45555666
Q ss_pred eee
Q psy2090 215 IQY 217 (374)
Q Consensus 215 Iqy 217 (374)
++-
T Consensus 143 ~~~ 145 (149)
T PF00339_consen 143 VEP 145 (149)
T ss_dssp EEE
T ss_pred ECc
Confidence 553
No 4
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=98.57 E-value=8.1e-07 Score=73.32 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=67.0
Q ss_pred EEeecceecCCceEEEEEeccc----ceEEEEEEEEeeEEEEE----eCCeEEEEEEEeeccCCCccCCCCeEE--EEEE
Q psy2090 229 VVRKDFMLSPGDLELEVTLDKQ----FRSVMAMVQQGVDVVLF----QNGQFRHSVDCVETQEGCPIQPGSSLQ--KVVY 298 (374)
Q Consensus 229 evsK~F~mS~gpL~LEasLDKe----iKkIKV~V~Q~adV~lf----s~~~yk~~Va~~E~~eGP~V~pgstl~--k~~~ 298 (374)
.+.|.-......+.++++++.. +++|++++.|..++... .+.++.+.++... ..+.....+.+|. ..+.
T Consensus 10 ~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~l~ 88 (136)
T PF02752_consen 10 SIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGGKDESKSEKRVVAKSK-NCGVDPGSSGSFEFNIQLQ 88 (136)
T ss_dssp EES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS----S-EEEEEEEEEEE-CCEB-B-TTEEEEEEEEE-
T ss_pred EECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeeccccceEEEEEEEEEe-cCCccCCCCceEEEEEEEc
Confidence 3444444455555555555543 39999999999998876 3355677777733 3321023444588 4554
Q ss_pred EeecccCCcccceeeecccccccccccccceeeecCCCCCcceEEE-EEEEEEEEEEEccCCceeeEEeeeeeeCC
Q psy2090 299 LTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIV-VSYMVKVKLYLGALGGELSAELPFILMHP 373 (374)
Q Consensus 299 L~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIi-VSY~VKVkL~vs~~ggdv~~eLPF~LmhP 373 (374)
+++ ++.+|+. ....+| |+|.++|++.+++...++.+++|+++.++
T Consensus 89 lP~-----------------------~~~~s~~-------~~~~~i~v~Y~l~v~~~~~~~~~~~~~~~PI~I~~~ 134 (136)
T PF02752_consen 89 LPS-----------------------NLPPSTS-------TNSRLIQVEYQLEVTVKLSGCTSDLRLELPITIGSS 134 (136)
T ss_dssp ---------------------------B------------CGGGSEEEEEEEEEEEEEETTSEEEEEEEEEEEEB-
T ss_pred CCC-----------------------ccCcccc-------cCCcEEEEEEEEEEEEEECCceeEEEEEccEEEEec
Confidence 553 5777633 345556 99999999999977789999999999875
No 5
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=94.82 E-value=0.036 Score=52.20 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=31.3
Q ss_pred hcCCCccceEEecCCCCCCC--CCCCCCCCcceEEEEEEEEE
Q psy2090 155 KLGPKAYPFTFNITPAAPPS--PGPDETGEPCGVTYYVKLFV 194 (374)
Q Consensus 155 KLG~nAyPF~f~lP~nlP~S--Pgp~d~GKpCGVdYeVKaf~ 194 (374)
..|.|+|||++-||-++|+| =|. +.-..|.||++|-+
T Consensus 48 ~~G~h~fPFS~LiPG~LPaS~~lgs---~~l~~I~Yel~A~a 86 (191)
T PF13002_consen 48 TKGSHAFPFSYLIPGHLPASMDLGS---TPLVSIKYELKAEA 86 (191)
T ss_pred CCCcccCCeeEECCCCCccccccCC---CCcEEEEEEEEEEE
Confidence 46999999999999999999 222 56788999999875
No 6
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=94.05 E-value=6.1 Score=39.07 Aligned_cols=180 Identities=18% Similarity=0.255 Sum_probs=88.5
Q ss_pred cccccCceEEEcccc---eeceeEEEEEeeeee--cCCCcccccCcccchheeeeeeeeecCCCCCCCCCcHHHHHHHhh
Q psy2090 81 FPTISDGVVVFEEDY---IQDRKVFGQVVCSFR--YGREEDEILGLNFQKELYLASEQIYPRSEKQHSSLTKMQDCLLKK 155 (374)
Q Consensus 81 dpv~~dGVVlvDpey---lk~rKVf~~l~caFR--YGreD~dVmGL~FrKdl~~~~~QvyPp~~~~~~~lT~lQerLlkK 155 (374)
|+| .|.|.|...- ++-.-|.+++...|. |.+- .. -+++-.+.++-||.. |+
T Consensus 39 E~V--~G~V~I~~~~gk~~~H~GI~l~lvG~ie~~~~~~--k~------~~f~~~~~eL~~~G~-----l~--------- 94 (275)
T PF03643_consen 39 ETV--SGKVVITSKPGKSLEHQGIKLELVGQIEAFYDSG--KP------IEFLSLSIELAPPGK-----LP--------- 94 (275)
T ss_dssp --E--EEEEEEEESSTS-EEES-EEEEEEEEEEEGCCTT---E------EEEEEEEEEEE-SEE-----E----------
T ss_pred CEE--EEEEEEEECCCCceEEeeEEEEEEEeEeEeccCC--Cc------eEeEEeeEEEcCCcc-----cC---------
Confidence 889 9999998554 555668888877663 3332 11 134445566656542 11
Q ss_pred cCCCccceEEecCCCCCCCCCCCCCCCcceEEEEEEEEEcCCCccCCCccceeEeeeeeeeecCCCCCCCC-eeEEeecc
Q psy2090 156 LGPKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQP-CTVVRKDF 234 (374)
Q Consensus 156 LG~nAyPF~f~lP~nlP~SPgp~d~GKpCGVdYeVKaf~a~~~deK~hKRnsVrL~IRKIqyAP~~~g~~P-~aevsK~F 234 (374)
+...|||.|..-+. |=+.+.|..--++|.+||-+ .|..|.=+-.+-|-+..|.+.....+| +.|+.
T Consensus 95 -~~~t~pFeF~~~~k----~yETY~G~~v~i~Y~lrv~v-----~R~~~~i~k~~ef~V~~~~~~p~~~~~ik~evg--- 161 (275)
T PF03643_consen 95 -EGKTFPFEFPLVEK----PYETYHGVNVNIRYFLRVTV-----KRSYKDISKEQEFWVQNFSITPESNQPIKMEVG--- 161 (275)
T ss_dssp -S-EEEEEEE-SB-------S--EE-SSEEEEEEEEEEE-------SSS-EEEEEEEEEE-EB--------EEEEEC---
T ss_pred -CCcEEeeEeCCCCC----CCccEeeeEEEEEEEEEEEE-----EccCCCcceEEEEEEEeccCCCCCCCCcccccC---
Confidence 13449999964322 23458999999999999998 444422233444444444332222222 23331
Q ss_pred eecCCceEEEEEecccc--------------------eEEEEEEEEeeEEEEEeCCeE--EEEEEEeeccCCCccCCCCe
Q psy2090 235 MLSPGDLELEVTLDKQF--------------------RSVMAMVQQGVDVVLFQNGQF--RHSVDCVETQEGCPIQPGSS 292 (374)
Q Consensus 235 ~mS~gpL~LEasLDKei--------------------KkIKV~V~Q~adV~lfs~~~y--k~~Va~~E~~eGP~V~pgst 292 (374)
. .+-||+|..++|.. |.|.+.+.-.-.+- -..+.. ..++...|..||- +-.|.+
T Consensus 162 -i-e~~lhief~~~k~~~~l~d~i~G~i~f~lv~~kIk~~elqLiR~Et~g-~~~~~~~e~t~i~~~eImDG~-p~rge~ 237 (275)
T PF03643_consen 162 -I-EDCLHIEFEYDKSKYHLKDVITGKIYFLLVRIKIKSMELQLIRVETCG-CGENYAKESTEIQKIEIMDGA-PCRGES 237 (275)
T ss_dssp -E-TTTEEEEEEES-SEEETT-EEEEEEEEEEESS-EEEEEEEEEEEEEEC-ECCCEEEEEEEEEEEEEESS----TT-E
T ss_pred -C-CccEEEEEEEcccceECCCCEEEEEEEEEEeecceEEEEEEEEEEEEe-cCCcccccceEEEEEEeecCC-ccccce
Confidence 1 24678888888863 44444433322221 112222 3468888999993 377888
Q ss_pred EEEEEEEee
Q psy2090 293 LQKVVYLTP 301 (374)
Q Consensus 293 l~k~~~L~P 301 (374)
.-=.+.|.+
T Consensus 238 IPirl~l~~ 246 (275)
T PF03643_consen 238 IPIRLFLPR 246 (275)
T ss_dssp EEEEEECCC
T ss_pred eeEEEEcCC
Confidence 665555555
No 7
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=85.21 E-value=23 Score=34.16 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=57.3
Q ss_pred cccccCceEEEcccce--eceeEEEEEeeeeecCCCcccccCcccchheeeeeeeeecCCCCCCCCCcHHHHHHHhhcCC
Q psy2090 81 FPTISDGVVVFEEDYI--QDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHSSLTKMQDCLLKKLGP 158 (374)
Q Consensus 81 dpv~~dGVVlvDpeyl--k~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~~QvyPp~~~~~~~lT~lQerLlkKLG~ 158 (374)
+-| .|.|.|.---. +=.++++.|.+.+....+|.+ ++.+..+++.++ ... -. ++.-..
T Consensus 28 e~v--~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~-----~~~~~~~~~~~v---~~~--f~--------I~~ge~ 87 (218)
T PF07070_consen 28 ETV--RGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKE-----YTQEVELARVRV---SGP--FT--------IEPGEE 87 (218)
T ss_pred CEE--EEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCe-----EEEEEEEEEEEe---CCC--EE--------ECCCCE
Confidence 557 88888763222 227899999999988777776 445555666655 110 00 111124
Q ss_pred CccceEEecCCCCCCCCCCCCCCCcceEEEEEE
Q psy2090 159 KAYPFTFNITPAAPPSPGPDETGEPCGVTYYVK 191 (374)
Q Consensus 159 nAyPF~f~lP~nlP~SPgp~d~GKpCGVdYeVK 191 (374)
..+||+|++|.+.|.| ..|..++++-++-
T Consensus 88 ~~iPF~~~lP~etPiT----~~~~~v~l~T~Ld 116 (218)
T PF07070_consen 88 KEIPFSFPLPWETPIT----EGGMRVWLRTGLD 116 (218)
T ss_pred EEEeEEEECCCCCCcc----CCCcEEEEEEEEE
Confidence 6889999999999999 5566666666663
No 8
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=82.74 E-value=2.9 Score=43.36 Aligned_cols=55 Identities=18% Similarity=0.394 Sum_probs=42.3
Q ss_pred CccceEEecCCCCCCCCCCCCCCCcceEEEEEEEEEcCCCccCCCccceeEeeeeeeeec
Q psy2090 159 KAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYA 218 (374)
Q Consensus 159 nAyPF~f~lP~nlP~SPgp~d~GKpCGVdYeVKaf~a~~~deK~hKRnsVrL~IRKIqyA 218 (374)
-.|=|+|.||.++||| +.|+..-+.|.+.+=+-. ......+--+++..||+..+.
T Consensus 121 k~f~~~~~lP~~lPPs----y~g~~i~~~Y~l~vg~~~-~~~~~~~~~~~~~Pi~v~~~v 175 (415)
T PF08737_consen 121 KSFHFSFTLPKDLPPS----YRGKAIKISYSLVVGTQR-GSSVNSKVKSIRVPIRVLPSV 175 (415)
T ss_pred EEEEEEEeCCCCCCCC----CcCcEEEEEEEEEEEEEE-cCCCCcceEEEEeCEEEeeee
Confidence 5788999999999999 999999999999766533 111223333899999999764
No 9
>KOG3063|consensus
Probab=61.47 E-value=1.5e+02 Score=29.73 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=64.2
Q ss_pred CCccceEEecCCCCCCCCCCCCCCCcceEEEEEEEEEcCCCccCCCccceeEeeeeeeeecCCCCCCCCeeEEeecceec
Q psy2090 158 PKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLS 237 (374)
Q Consensus 158 ~nAyPF~f~lP~nlP~SPgp~d~GKpCGVdYeVKaf~a~~~deK~hKRnsVrL~IRKIqyAP~~~g~~P~aevsK~F~mS 237 (374)
.++|||-|.=-.- |=..+.|+--.++|.+|+.+.....|-..- ..+.+.-..-+|.... +-..|+- =
T Consensus 103 ~~~fpFeF~~vek----pyEsY~G~NV~lrY~lkvTv~Rr~~di~ke---~d~~V~~~~~~P~~nn-~IkmeVG-----I 169 (301)
T KOG3063|consen 103 SQSFPFEFPHVEK----PYESYIGKNVRLRYFLKVTVSRRLTDIVKE---KDLVVHNLSTYPEINN-SIKMEVG-----I 169 (301)
T ss_pred cccCCcccccccc----chhhhcCcceEEEEEEEEEEEechhhhhhh---hheeeEecccCCCCCC-ceeEeec-----h
Confidence 3788887731111 666699999999999999986544332221 2344444444443322 1122221 0
Q ss_pred CCceEEEEEecccc---------------eEEEEEEEEeeEEEEE---eCC------eEEEEEEEeeccCC-CccCCCCe
Q psy2090 238 PGDLELEVTLDKQF---------------RSVMAMVQQGVDVVLF---QNG------QFRHSVDCVETQEG-CPIQPGSS 292 (374)
Q Consensus 238 ~gpL~LEasLDKei---------------KkIKV~V~Q~adV~lf---s~~------~yk~~Va~~E~~eG-P~V~pgst 292 (374)
+.=||+|..-.|.- -+||| |+-++.+- ++| .=..++|.-|.-|| | -.|.|
T Consensus 170 edCLHIEFEYnKskYhLkdvIvGkIYFlLvRikI---k~Mel~iikrEstG~gpn~~~e~eTiakyeIMDGap--vrGEs 244 (301)
T KOG3063|consen 170 EDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKI---KHMELSIIKRESTGTGPNTYVETETIAKYEIMDGAP--VRGES 244 (301)
T ss_pred hhceEEEEEecccccchhheEEeeEEEEEEEEEe---eeeEEEEEEeecccCCCcceeccceeeeEEeccCCC--cCCCe
Confidence 12355555555541 44444 45555553 222 23467888888898 7 45666
No 10
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=38.04 E-value=49 Score=27.56 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=30.6
Q ss_pred cCCCCe-EEEEEEEeecccCCcccceeeecccccccccccccceeeecCCCCCcceEEEEEEEEEEEEEEccCCceeeEE
Q psy2090 287 IQPGSS-LQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIVVSYMVKVKLYLGALGGELSAE 365 (374)
Q Consensus 287 V~pgst-l~k~~~L~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIiVSY~VKVkL~vs~~ggdv~~e 365 (374)
++||.- |.-.|.|++ +|+||--...+ -|.|.+++.+.-. ...+...+
T Consensus 90 l~~G~~~fpF~f~LP~-----------------------~lP~S~~~~~g--------~I~Y~l~a~l~~~-~~~~~~~~ 137 (149)
T PF00339_consen 90 LPPGEYEFPFEFQLPS-----------------------NLPSSFEGSHG--------SIRYKLKATLDRP-GKKDHKAK 137 (149)
T ss_dssp --C-TTEEEEEE---T-----------------------TS--SEEEE-S--------EEEEEEEEEESST-TSE--CGG
T ss_pred ccCCCEEEEEEEECCC-----------------------CCCceEeccCc--------CEEEEEEEEEECC-CCCCcEEE
Confidence 566653 777888777 88887444333 7899999977332 34678888
Q ss_pred eeeeeeCC
Q psy2090 366 LPFILMHP 373 (374)
Q Consensus 366 LPF~LmhP 373 (374)
-+|++.+|
T Consensus 138 ~~~~v~~~ 145 (149)
T PF00339_consen 138 REFTVVEP 145 (149)
T ss_dssp EEEEEEEE
T ss_pred EEEEEECc
Confidence 88888764
No 11
>cd01515 Arch_FBPase_1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family (FBPase class IV). These are Mg++ dependent phosphatases. Members in this family may have both fructose-1,6-bisphosphatase and inositol-monophosphatase activity. In hyperthermophilic archaea, inositol monophosphatase is thought to play a role in the biosynthesis of di-myo-inositol-1,1'-phosphate, an osmolyte unique to hyperthermophiles.
Probab=34.78 E-value=30 Score=32.94 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=39.0
Q ss_pred cCcccccccCceEEEcccceeceeEEEEEeeeeecCC--CcccccCcccchheeeee
Q psy2090 77 LQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGR--EEDEILGLNFQKELYLAS 131 (374)
Q Consensus 77 ~~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGr--eD~dVmGL~FrKdl~~~~ 131 (374)
.=.|||| || -..|++|.-.|+...|..+-|+ -..=|+-..+..++|.+.
T Consensus 78 ~WvIDPI--DG----T~nfv~g~p~~~isial~~~g~~~p~~gvv~~P~~~~~~~a~ 128 (257)
T cd01515 78 TVVLDPL--DG----TYNAINGIPFYSVSVAVFKIDKSDPYYGYVYNLATGDLYYAI 128 (257)
T ss_pred EEEEeCc--CC----hhHHhcCCCceEEEEEEEeCCCCCeEEEEEEecCCCCeEEEE
Confidence 4568999 99 4599999999999999999998 555566667777777754
No 12
>PF04426 Bul1_C: Bul1 C terminus; InterPro: IPR022794 This domain contains the C terminus of Saccharomyces cerevisiae Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. This domain is found C-terminal to PF04425 from PFAM. This signature also matches the C terminus of some bacterial Methyl-accepting chemotaxis proteins.
Probab=31.11 E-value=66 Score=31.98 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=27.2
Q ss_pred CcceEEEEEEEEEEEEEEccCCceeeEEeeeeee
Q psy2090 338 KDAFGIVVSYMVKVKLYLGALGGELSAELPFILM 371 (374)
Q Consensus 338 ke~~GIiVSY~VKVkL~vs~~ggdv~~eLPF~Lm 371 (374)
-+-|=+-=.|++||.+.+++.+|.+++++|..+.
T Consensus 237 FqSCl~~R~Y~lrv~ik~~~~~~~~~l~VPv~i~ 270 (272)
T PF04426_consen 237 FQSCLCSRLYYLRVNIKFKNHGGSVSLKVPVQIQ 270 (272)
T ss_pred chheeeeeEEEEEEEEEEcCCCCEEEEEeceEEe
Confidence 4556555689999999996666789999999874
No 13
>COG5554 NifU Nitrogen fixation protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.35 E-value=64 Score=25.87 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=29.2
Q ss_pred cceEEEEEcCcceEeccCcccccccCceEEEcccceeceeEEEEEeeeee
Q psy2090 61 RNLKVLELLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFR 110 (374)
Q Consensus 61 ~~~~tvYLgkRDfvDh~~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFR 110 (374)
..|++.|+.|.|. . +|| |.|+.+-+-|-|+. |.-.+|
T Consensus 9 ~agLsaYiPKKDL----E--Epi-----i~V~nedlwGG~il--L~NGWr 45 (69)
T COG5554 9 DAGLSAYIPKKDL----E--EPI-----IVVKNEDLWGGKIL--LANGWR 45 (69)
T ss_pred CCceEEEcccccc----c--cce-----EEEeccccccceEE--eccceE
Confidence 4589999999983 3 788 89999999998876 455555
No 14
>PRK12676 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; Reviewed
Probab=29.25 E-value=37 Score=32.42 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=40.0
Q ss_pred ccCcccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCcccchheeeeee
Q psy2090 76 FLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASE 132 (374)
Q Consensus 76 h~~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~~ 132 (374)
..=.|||| ||- ..|++|.-.|+...+.++-|+-..=|+-..+..++|.+..
T Consensus 82 ~~WvIDPi--DGT----~nfv~g~p~~~vsial~~~g~p~~gvV~~P~~~e~~~A~~ 132 (263)
T PRK12676 82 YTVVLDPL--DGT----YNAINGIPFYAISIAVFKGGKPVYGYVYNLATGDFYEAIP 132 (263)
T ss_pred eEEEEecc--CCc----hHHhcCCCceEEEEEEEECCeEEEEEEEecCCCCEEEEEC
Confidence 34568999 994 4999999999988888877766666666778888887654
No 15
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=28.14 E-value=2.2e+02 Score=29.77 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=25.8
Q ss_pred cccceeeecCCCCCcceEEEEEEEEEEEEEEccCC--ceeeEEeeeeee
Q psy2090 325 YLASSTLLASPDPKDAFGIVVSYMVKVKLYLGALG--GELSAELPFILM 371 (374)
Q Consensus 325 nLASSTi~~~~~~ke~~GIiVSY~VKVkL~vs~~g--gdv~~eLPF~Lm 371 (374)
+|++| -+ --.|=++|++.|-+.-++.. ....+++||.+.
T Consensus 132 ~lPPs-------y~-g~~i~~~Y~l~vg~~~~~~~~~~~~~~~~Pi~v~ 172 (415)
T PF08737_consen 132 DLPPS-------YR-GKAIKISYSLVVGTQRGSSVNSKVKSIRVPIRVL 172 (415)
T ss_pred CCCCC-------Cc-CcEEEEEEEEEEEEEEcCCCCcceEEEEeCEEEe
Confidence 78898 33 22366889888877662211 356788898875
No 16
>cd01639 IMPase IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.
Probab=27.72 E-value=37 Score=31.77 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=38.9
Q ss_pred cCcccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCcccchheeeeee
Q psy2090 77 LQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASE 132 (374)
Q Consensus 77 ~~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~~ 132 (374)
.=.|||| ||- ..|++|.--|+...+-++-|+--.=|+-..+..|+|.+..
T Consensus 77 ~WvIDPI--DGT----~nf~~g~p~~~vsial~~~g~p~~gvV~~P~~~~~~~a~~ 126 (244)
T cd01639 77 TWIIDPL--DGT----TNFVHGFPHFAVSIALAVKGEPVVGVVYDPIRNELFTAVR 126 (244)
T ss_pred EEEEecc--cCh----hHHhcCCCcEEEEEEEEECCEEEEEEEEeCCCCcEEEEEC
Confidence 3458999 994 4999999999988888887776666677777777777643
No 17
>TIGR01331 bisphos_cysQ 3'(2'),5'-bisphosphate nucleotidase, bacterial. Sulfate is incorporated into 3-phosphoadenylylsulfate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulfate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. This model describes a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle.
Probab=24.51 E-value=43 Score=31.64 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=39.9
Q ss_pred CcccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCcccchheeeee
Q psy2090 78 QLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 131 (374)
Q Consensus 78 ~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~ 131 (374)
=.|||| ||-- .|++|.-.|+...+.++-|+--.=|+-..+..++|.+.
T Consensus 79 WvIDPI--DGT~----nF~~G~p~~~vsIal~~~g~pv~gvI~~P~~~~~~~A~ 126 (249)
T TIGR01331 79 WLVDPL--DGTK----EFINRNGDFTVNIALVEHGVPVLGVVYAPATGVTYFAT 126 (249)
T ss_pred EEEcCC--cChH----HHhcCCCcEEEEEEEEECCEEEEEEEEecCCCCEEEEE
Confidence 358999 9954 99999999999999998887777777778888888764
No 18
>cd01641 Bacterial_IMPase_like_1 Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.
Probab=24.28 E-value=54 Score=30.94 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=38.5
Q ss_pred cccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCcccchheeeeee
Q psy2090 79 LVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASE 132 (374)
Q Consensus 79 ~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~~ 132 (374)
.|||| ||- ..|++|.--|+...+.++-|+--.=|+-..+..++|.+..
T Consensus 76 viDPI--DGT----~nf~~g~p~~~vsial~~~g~p~~gvV~~P~~~~~~~A~~ 123 (248)
T cd01641 76 VLDPI--DGT----KSFIRGLPVWGTLIALLHDGRPVLGVIDQPALGERWIGAR 123 (248)
T ss_pred EEecC--cCc----hhHhcCCCceEEEEEEEECCEEEEEEEccCccCCEEEEeC
Confidence 48999 995 4899999999988888877776666777788888888643
No 19
>PRK10757 inositol monophosphatase; Provisional
Probab=23.14 E-value=52 Score=31.52 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=37.2
Q ss_pred CcccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCcccchheeeee
Q psy2090 78 QLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 131 (374)
Q Consensus 78 ~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~ 131 (374)
=.|||| ||-. .|++|.--|+...+-++-|+--.=|+-..+.+++|.+.
T Consensus 81 WiIDPI--DGT~----nf~~g~p~~~vsial~~~g~pv~GvV~~P~~~~~~~A~ 128 (267)
T PRK10757 81 WVIDPL--DGTT----NFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTAT 128 (267)
T ss_pred EEEeCc--cCch----HHHhCCCcEEEEEEEEECCEEEEEEEEcCCCCCEEEEE
Confidence 448999 9954 89999999998887777666555566667788888764
No 20
>cd01517 PAP_phosphatase PAP-phosphatase_like domains. PAP-phosphatase is a member of the inositol monophosphatase family, and catalyses the hydrolysis of 3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In Saccharomyces cerevisiae, HAL2 (MET22) is involved in methionine biosynthesis and provides increased salt tolerance when over-expressed. Bacterial members of this domain family may differ in their substrate specificity and dephosphorylate different targets, as the substrate binding site does not appear to be conserved in that sub-set.
Probab=23.01 E-value=65 Score=30.89 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=33.6
Q ss_pred cCcccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCccc-------chheeeee
Q psy2090 77 LQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNF-------QKELYLAS 131 (374)
Q Consensus 77 ~~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~F-------rKdl~~~~ 131 (374)
.=.|||| ||=- .|++|. -|+...+-++=|+--.=|+-..+ +.++|.+.
T Consensus 74 ~WiIDPI--DGT~----nfv~g~-~~~vsIal~~~g~pv~GvI~~P~~~~~~~~~~~~~~A~ 128 (274)
T cd01517 74 FWVLDPI--DGTK----GFLRGD-QFAVALALIEDGEVVLGVIGCPNLPLDDGGGGDLFSAV 128 (274)
T ss_pred EEEEcCC--cCch----hhhcCC-ceEEEEEEEECCEEEEEEEeCCCccccCCCCCcEEEEE
Confidence 3458999 9954 999999 99988877765554444555555 66666653
Done!