Query psy2090
Match_columns 374
No_of_seqs 141 out of 207
Neff 4.1
Searched_HMMs 29240
Date Sat Aug 17 00:02:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugu_A S-arrestin; arrestin fo 100.0 2E-127 7E-132 950.2 34.8 315 54-374 22-369 (380)
2 1suj_A CONE arrestin; sensory 100.0 2E-110 8E-115 833.5 35.5 313 55-374 8-352 (392)
3 1g4m_A Beta-arrestin1; sensory 100.0 1.9E-93 6.3E-98 711.0 33.3 315 55-374 9-355 (393)
4 2r51_A Vacuolar protein sortin 99.2 4.9E-09 1.7E-13 103.2 23.8 219 81-372 48-298 (340)
5 2fau_A Vacuolar protein sortin 99.1 1E-08 3.5E-13 101.0 20.1 207 81-357 48-284 (341)
6 2r51_A Vacuolar protein sortin 83.8 12 0.0004 36.8 12.3 104 231-372 39-155 (340)
7 2fau_A Vacuolar protein sortin 70.1 69 0.0024 31.3 13.3 91 243-371 54-154 (341)
8 1v5n_A PDI-like hypothetical p 18.4 27 0.00091 27.7 0.1 8 157-164 1-8 (89)
9 3fc7_A HTR-like protein, senso 15.6 30 0.001 24.9 -0.2 37 86-125 30-66 (125)
10 1suj_A CONE arrestin; sensory 14.1 1.4E+02 0.0049 29.7 4.2 29 325-353 119-147 (392)
No 1
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=100.00 E-value=2.1e-127 Score=950.20 Aligned_cols=315 Identities=37% Similarity=0.665 Sum_probs=298.9
Q ss_pred hhccccccceEEEEEcCcceEeccCcccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCcccchheeeeeee
Q psy2090 54 SFGNQMVRNLKVLELLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQ 133 (374)
Q Consensus 54 ~~~~~~~~~~~tvYLgkRDfvDh~~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~~Q 133 (374)
=|-++.-|+++|+||||||||||+++|||| ||||+|||||+|||||||||+|||||||||+|||||+||||||++++|
T Consensus 22 VfKK~s~n~klt~YlgkRdfvdh~~~vdpv--dGvv~vd~~~~~~rkvf~~l~~~fRYGred~dV~Gl~F~kdl~~~~~q 99 (380)
T 3ugu_A 22 IFKKISRDKSVTIYLGKRDYIDHVERVEPV--DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQ 99 (380)
T ss_dssp CEEEECTTSSEEEEESCSEEEECSSCBCCE--EEEEEECHHHHTTCEEEEEEEEEEEECC------CCCEEEEEEEEEEE
T ss_pred EEEeeCCCCcEEEEecCceEEeecCccccc--ceEEEECHHHhCCCEEEEEEEEEEecCCCccccccchhhhhhhheeEE
Confidence 466677777899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCcHHHHHHHhhcCCCccceEEecCCCCCCC----CCCCCCCCcceEEEEEEEEEcCCC---ccCCCccc
Q psy2090 134 IYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVTYYVKLFVGENE---TDRSHRRS 206 (374)
Q Consensus 134 vyPp~~~~~~~lT~lQerLlkKLG~nAyPF~f~lP~nlP~S----Pgp~d~GKpCGVdYeVKaf~a~~~---deK~hKRn 206 (374)
||||.+ .+++||+|||||+||||+|||||+|+||+|+||| |||+|+||+|||+||||||+|++. +||+||||
T Consensus 100 vyP~~~-~~~~lT~lQe~L~kKlG~nayPF~f~LP~~lPsSv~LQp~p~d~Gk~cgV~YeVKafia~~~~~~~dk~~Kr~ 178 (380)
T 3ugu_A 100 VFPPVG-ASGATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKS 178 (380)
T ss_dssp EESCCS-CCCCCCHHHHHHHHHHCTTEEEEEECCCSSCCCSEEECCCTTCCSCCEEEEEEEEEEEEBCCSSSSSBCCGGG
T ss_pred ecCCCC-CCCCCCHHHHHHHHHhCcCceeEEEeCCCCCCCEEEeccCCccCCCccceEEEEEEEEccCcccccccccccc
Confidence 999875 4578999999999999999999999999999999 999999999999999999999987 89999999
Q ss_pred eeEeeeeeeeecCCCCCCCCeeEEeecceecCCceEEEEEecccc---------------------eEEEEEEEEeeEEE
Q psy2090 207 TVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQF---------------------RSVMAMVQQGVDVV 265 (374)
Q Consensus 207 sVrL~IRKIqyAP~~~g~~P~aevsK~F~mS~gpL~LEasLDKei---------------------KkIKV~V~Q~adV~ 265 (374)
+|+|+||||||||..+++||++|++|+|+|++|||+|+|+|||+. |+||++++|++|+|
T Consensus 179 sV~L~Irklq~aP~~~~~~P~~e~~K~F~~ssGpl~L~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~ 258 (380)
T 3ugu_A 179 SVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVV 258 (380)
T ss_dssp EEEEEEEEEEBCCSCCCCCCEEEEEEECTTCCCEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEEC
T ss_pred eEEEeeeecccCCcccCCCCcceEEEEeEecCCCEEEEEEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999985 99999999999999
Q ss_pred EEeCCeEEEEEEEeeccCCCccCCCCeEEEEEEEeecccCCcccceeeecccccccccccccceeeecCCCCCcceEEEE
Q psy2090 266 LFQNGQFRHSVDCVETQEGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIVV 345 (374)
Q Consensus 266 lfs~~~yk~~Va~~E~~eGP~V~pgstl~k~~~L~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIiV 345 (374)
||++++|+|+||++|++| +|+||+||+|+|+|+|+|++||+||||||||+|||||| ||||||+++++.+||++||+|
T Consensus 259 l~s~~~y~~~Va~~E~~e--pV~pgst~~k~~~l~P~l~~n~~krglALdG~lk~edt-nLASsT~~~~~~~ke~~GI~V 335 (380)
T 3ugu_A 259 LYSSDYYIKTVAAEEAQE--KVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDT-NLASSTIIKEGIDKTVMGILV 335 (380)
T ss_dssp SSSCCEEEEEEEEEECSC--CBCTTEEEEEEEEECCCGGGCSCCTTSCBSSCTTCTTC-CBCCCCCCCTTCCGGGGSEEE
T ss_pred EecCCeEEEEEEEeccCC--cCCCCCeEEeeEEEEEecccCCceeeEEecceeccCCC-cccceeEecCCCCCcceEEEE
Confidence 999999999999999999 69999999999999999999999999999999999999 999999999999999999999
Q ss_pred EEEEEEEEEEccCCc-----eeeEEeeeeeeCCC
Q psy2090 346 SYMVKVKLYLGALGG-----ELSAELPFILMHPK 374 (374)
Q Consensus 346 SY~VKVkL~vs~~gg-----dv~~eLPF~LmhPk 374 (374)
||+|||||++|++|| ||++||||+|||||
T Consensus 336 sY~VkVkl~v~~lgg~~~~sdv~~elPf~Lmhp~ 369 (380)
T 3ugu_A 336 SYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 369 (380)
T ss_dssp EEEEEEEEEECCCTTCSSCEEEEEEEEEEEEBCC
T ss_pred EEEEEEEEEEecccCCccccceEEEecccccCCC
Confidence 999999999997554 99999999999997
No 2
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=100.00 E-value=2.5e-110 Score=833.54 Aligned_cols=313 Identities=42% Similarity=0.741 Sum_probs=303.4
Q ss_pred hccccccceEEEEEcCcceEeccCcccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCcccchheeeeeeee
Q psy2090 55 FGNQMVRNLKVLELLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQI 134 (374)
Q Consensus 55 ~~~~~~~~~~tvYLgkRDfvDh~~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~~Qv 134 (374)
|-++.-|+++|+||||||||||+++|||| ||||+|||+|+||||||+||+|||||||||+|||||+||||+|+++.|+
T Consensus 8 ~kk~s~n~~~t~yl~krd~vd~~~~vd~v--dGvV~vd~~~lk~rkv~~~l~~~fryGred~~v~Gl~f~kel~~~~~qv 85 (392)
T 1suj_A 8 YKKTCPNAKLSIYLGKRDFVDHVEHVEPV--DGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSFRKDLYSLATQV 85 (392)
T ss_dssp EEEECTTSSEEEEESCSEEEECSSCBCCE--EEEEEECTTTSSSCEEEEEEEEEEEEECCSSCCSSCEEEEEEEEEEEEE
T ss_pred EEccCCCCeEEEEECCceEEeecCccCce--eeEEEEcHHHhccceEEEEEEEeeccCCCchhcCcceEEEEEEEEEEEE
Confidence 55667778899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcHHHHHHHhhcCCCccceEEecCCCCCCC----CCCCCCCCcceEEEEEEEEEcCCCccCCCccceeEe
Q psy2090 135 YPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVAL 210 (374)
Q Consensus 135 yPp~~~~~~~lT~lQerLlkKLG~nAyPF~f~lP~nlP~S----Pgp~d~GKpCGVdYeVKaf~a~~~deK~hKRnsVrL 210 (374)
||+. +.+++|++||||+|++|.|+|||+|+||+|+||| |||+|+||+|||+|+||||++++.+||+|||++|++
T Consensus 86 ~p~~--~~~~~t~lQe~Ll~~~G~h~fPFsFqLP~~lPsSf~lqp~~~~eGk~g~VrY~VKa~i~~~~~dk~~Kr~tv~l 163 (392)
T 1suj_A 86 YPPE--TKEPLTPLQEKLMKKLGAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEEKIHKRNSVQL 163 (392)
T ss_dssp ESCC--SCCCCCHHHHHHHHHHCSSEEEEEECCCSSCCCCEEECCCTTCCSCCEEEEEEEEEEEESCTTSCCCGGGEEEE
T ss_pred eCCC--CCccccHHHHHhhhcccCeeEeEEeeCCCCCCCeEEeccCCccCCCceeEEEEEEEEEcCChhhccceEEEEEE
Confidence 9998 4578999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCCCeeEEeecceecCCceEEEEEecccc---------------------eEEEEEEEEeeEEEEEeC
Q psy2090 211 GIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQF---------------------RSVMAMVQQGVDVVLFQN 269 (374)
Q Consensus 211 ~IRKIqyAP~~~g~~P~aevsK~F~mS~gpL~LEasLDKei---------------------KkIKV~V~Q~adV~lfs~ 269 (374)
+||++||||...++||++|++|+|+|++|||+|+|+|||+. |+||+++.|++++|||++
T Consensus 164 ~ir~l~~~P~~~~~~p~~e~~k~f~~ssGpl~l~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~ 243 (392)
T 1suj_A 164 VIRKVQFAPANLGVAPKTEITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSL 243 (392)
T ss_dssp EEEEEECCCSSCCCCCCCEEEEEEEETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECSSSC
T ss_pred eeeccccCccccCCCCeeEEEEEeEecCCCEEEEEEeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEEecC
Confidence 99999999999999999999999999999999999999985 999999999999999999
Q ss_pred CeEEEEEEEeeccCCCccCCCCeEEEEEEEeecccCCcccceeeecccccccccccccceeeecCCCCCcceEEEEEEEE
Q psy2090 270 GQFRHSVDCVETQEGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIVVSYMV 349 (374)
Q Consensus 270 ~~yk~~Va~~E~~eGP~V~pgstl~k~~~L~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIiVSY~V 349 (374)
++|+++||.+|+.+ +|+||+||+++|+|+|++++||+||||||||+|||||| ||||||+++++.+||+|||+|||+|
T Consensus 244 ~~~k~~Va~~e~~e--~V~pgst~~k~~~L~P~l~~n~~k~glaldg~lk~~dT-nLassti~~~~~~~~~~gI~VsY~v 320 (392)
T 1suj_A 244 DKYVKTVCAEETND--TVAANSTLSKTFSVTPMLANNREKRGLALDGKLKHEDT-NLASTTVIRPGMDKEVLGILVSYKV 320 (392)
T ss_dssp CEEEEEEEEEECCC--CBCTTEEEEEEEEECCCGGGCSCCTTCCBSSCTTBSSC-CBCCCCCCCTTSCGGGGSEEEEEEE
T ss_pred CcEEEEEEEEecCC--CcCCCCEEEEEEEEeccccCCCccceeeecccccCCCc-cccccccccCCCCccccceEEEEEE
Confidence 99999999999999 69999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEEEEEccCC-------ceeeEEeeeeeeCCC
Q psy2090 350 KVKLYLGALG-------GELSAELPFILMHPK 374 (374)
Q Consensus 350 KVkL~vs~~g-------gdv~~eLPF~LmhPk 374 (374)
||++++|++| +|+++||||+||||+
T Consensus 321 kVkl~v~~gg~~~~~~s~d~~velPf~L~~p~ 352 (392)
T 1suj_A 321 KVHLVVARGGILGDLTSSDVAVELPLTLMHPK 352 (392)
T ss_dssp EEEEEEETTSSTTCCCCEEEEEEEEEEEECCC
T ss_pred EEEEEEcCCcccccccccCeeEEECeEEeCCC
Confidence 9999999844 499999999999996
No 3
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=100.00 E-value=1.9e-93 Score=710.98 Aligned_cols=315 Identities=44% Similarity=0.780 Sum_probs=302.5
Q ss_pred hccccccceEEEEEcCcceEeccCcccccccCceEEEcccceeceeEEEEEeeeeecCCCcccccCcccchheeeeeeee
Q psy2090 55 FGNQMVRNLKVLELLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQI 134 (374)
Q Consensus 55 ~~~~~~~~~~tvYLgkRDfvDh~~~Vdpv~~dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrKdl~~~~~Qv 134 (374)
|-++..|.++|+||||||||||++++||| ||+|+||++++|+||||++|+|+|||||||+||||++|+||+|+++.|+
T Consensus 9 ~kk~s~n~~i~~yl~krdfvd~~~~~d~V--~GvV~id~~~lk~r~v~v~l~~~frygr~~~~v~g~~f~ke~~~~~~~v 86 (393)
T 1g4m_A 9 FKKASPNGKLTVYLGKRDFVDHIDLVEPV--DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQS 86 (393)
T ss_dssp EEEECTTSSCEEEESCSEEEECSSCBCCE--EEEEECCHHHHTTCEEEEEEEEEEEESCTTCCCTTTCEEEEEEEEEEEE
T ss_pred EEeeCCCCeEEEEeCCceEEEecCCCCEE--EEEEEEehhHhcccEEEEEEEEEEEecCCcceecccccceeEEEEEEEE
Confidence 55666777899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcHHHHHHHhhcCCCccceEEecCCCCCCC----CCCCCCCCcceEEEEEEEEEcCCCccCCCccceeEe
Q psy2090 135 YPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVAL 210 (374)
Q Consensus 135 yPp~~~~~~~lT~lQerLlkKLG~nAyPF~f~lP~nlP~S----Pgp~d~GKpCGVdYeVKaf~a~~~deK~hKRnsVrL 210 (374)
||+.+++..++|++||||+++.|.|+|||+|+||+++||| |||+|.|++|+|+|+|||+++...++++||++++++
T Consensus 87 ~p~~~~~~~~lt~lqe~l~~~~G~h~fPF~f~LP~~lPsSfelq~~~~d~G~~g~IrY~Vka~i~~~~~~k~~K~~~v~l 166 (393)
T 1g4m_A 87 FPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRL 166 (393)
T ss_dssp ESCSTTSCCCCCHHHHHHHHHSCTTEEEEEECCCTTSCCCEEEECCGGGGGGCEEEEEEEEEEEESSTTSCCCGGGEEEE
T ss_pred eCCCCcccCccchhhhhhhccCCceEEEEEeeCCCCCCceEEEccccccCCCcEEEEEEEEEEEcCCcccccceEEEEEE
Confidence 9987756678999999999999999999999999999999 999999999999999999999988899999999999
Q ss_pred eeeeeeecCCCCCCCCeeEEeecceecCCceEEEEEecccc---------------------eEEEEEEEEeeEEEEEeC
Q psy2090 211 GIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQF---------------------RSVMAMVQQGVDVVLFQN 269 (374)
Q Consensus 211 ~IRKIqyAP~~~g~~P~aevsK~F~mS~gpL~LEasLDKei---------------------KkIKV~V~Q~adV~lfs~ 269 (374)
+||+++++|...++||++|.+|.|+|++|+|+|+|+|||+. ++|++++.|++|+++|++
T Consensus 167 ~i~~l~~~p~~~~~~~~~e~~k~fc~~sG~l~l~~sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~~~~s~ 246 (393)
T 1g4m_A 167 VIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNT 246 (393)
T ss_dssp EEEEEECCCCCCSSCCCCEEEEECBSSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSSBC
T ss_pred eccccccCchhhcCCCceEEEEEEEEcCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEEEEecC
Confidence 99999999999899999999999999999999999999984 899999999999999999
Q ss_pred CeEEEEEEEeeccCCCccCCCCeEEEEEEEeecccCCcccceeeecccccccccccccceeeecCCCCCcceEEEEEEEE
Q psy2090 270 GQFRHSVDCVETQEGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIVVSYMV 349 (374)
Q Consensus 270 ~~yk~~Va~~E~~eGP~V~pgstl~k~~~L~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIiVSY~V 349 (374)
++|+++||.+|+.+ +|.||++++++|.|+|++++||+||||||||+|||||| |||||||++++.++|++||+|||+|
T Consensus 247 ~~~k~~Va~~e~~~--~V~~gs~~~~~~~L~P~l~p~~~~~~~aldg~lk~~dt-~l~ss~ii~~~~~~~~~gi~VsY~v 323 (393)
T 1g4m_A 247 AQYKCPVAMEEADD--TVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDT-NLASSTLLREGANREILGIIVSYKV 323 (393)
T ss_dssp EEEEEEEEEEEECC--CBCTTEEEEEEEEECCCGGGTTTCSSEEESSCTTSTTC-CBCCCCCCCTTCCSGGGSEEEEEEE
T ss_pred CceEEEEEEEecCC--cCCCCCEEeeEEEEcCCCCCcccccceeeccccccCCc-ccccceeecCCCCccccceEEEEEE
Confidence 99999999999998 69999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEEEEEccCC-------ceeeEEeeeeeeCCC
Q psy2090 350 KVKLYLGALG-------GELSAELPFILMHPK 374 (374)
Q Consensus 350 KVkL~vs~~g-------gdv~~eLPF~LmhPk 374 (374)
+|++.++++| +|++++|||+||||+
T Consensus 324 kV~l~v~~gg~~~~~~~~~l~~~lPi~i~~p~ 355 (393)
T 1g4m_A 324 KVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 355 (393)
T ss_dssp EEEEEECCC--------CEEEEEEEEEEECCC
T ss_pred EEEEEecCCCcccccccccEEEEeCEEEecCC
Confidence 9999999743 399999999999996
No 4
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=99.18 E-value=4.9e-09 Score=103.20 Aligned_cols=219 Identities=14% Similarity=0.156 Sum_probs=148.6
Q ss_pred cccccCceEEEccc----ceeceeEEEEEeeee--ecCCCcccccCcccchheeeeeeeeecCCCCCCCCCcHHHHHHHh
Q psy2090 81 FPTISDGVVVFEED----YIQDRKVFGQVVCSF--RYGREEDEILGLNFQKELYLASEQIYPRSEKQHSSLTKMQDCLLK 154 (374)
Q Consensus 81 dpv~~dGVVlvDpe----ylk~rKVf~~l~caF--RYGreD~dVmGL~FrKdl~~~~~QvyPp~~~~~~~lT~lQerLlk 154 (374)
|.| .|.|.|... -++-+-|.+++...+ .|.+.. .-|++-.+.++.||.. |+
T Consensus 48 E~V--sG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~~~~~--------~~~f~~~~~eL~~pG~-----L~-------- 104 (340)
T 2r51_A 48 ETV--SGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDRGN--------HHEFVSLVKDLARPGE-----IT-------- 104 (340)
T ss_dssp CCE--EEEEEEEESSTTSCEEESCEEEEEEEEEEEGGGTTC--------CEEEEEEEEEEECSEE-----EC--------
T ss_pred CEE--EEEEEEEECCCCCeeEEEEEEEEEEEEEEEEecCCC--------cEEEEEEEEEecCCCc-----cC--------
Confidence 788 999999854 355555666665443 243321 1123333445555431 11
Q ss_pred hcCCCccceEEecCCCCCCCCCCCCCCCcceEEEEEEEEEcCCCccCCCccc-eeEeeeeeeeecCCCCC-CCCeeEEee
Q psy2090 155 KLGPKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRRS-TVALGIRKIQYAPSKNG-RQPCTVVRK 232 (374)
Q Consensus 155 KLG~nAyPF~f~lP~nlP~SPgp~d~GKpCGVdYeVKaf~a~~~deK~hKRn-sVrL~IRKIqyAP~~~g-~~P~aevsK 232 (374)
-|.+ |||.|.+|..+|+| +.|+...|+|.|||-+ +++|+ + +....|.+..+.+.... .+-+.|+
T Consensus 105 -~G~~-fpF~F~lp~~l~eS----y~G~~g~IrY~vkv~i-----~Rp~~-di~~~~eF~V~~~~~~p~~~~pIk~Ev-- 170 (340)
T 2r51_A 105 -QSQA-FDFEFTHVEKPYES----YTGQNVKLRYFLRATI-----SRRLN-DVVKEMDIVVHTLSTYPELNSSIKMEV-- 170 (340)
T ss_dssp -SCEE-EEEEECSBCCCSCC----EECSSEEEEEEEEEEE-----CCSSC-CEEEEEEEEEECCCCCCCCCCCEEEEE--
T ss_pred -CCcE-EeeEeCCCCCCCcC----eEeeeEEEEEEEEEEE-----EecCC-CceEEEEEEEEeCCCCCccCCCEeccc--
Confidence 3677 99999999999999 9999999999999999 89999 6 77888888876432111 1122333
Q ss_pred cceecCCceEEEEEecccc--------------------eEEEEEEEEeeEEEEEeCCeE---EEEEEEeeccCCCccCC
Q psy2090 233 DFMLSPGDLELEVTLDKQF--------------------RSVMAMVQQGVDVVLFQNGQF---RHSVDCVETQEGCPIQP 289 (374)
Q Consensus 233 ~F~mS~gpL~LEasLDKei--------------------KkIKV~V~Q~adV~lfs~~~y---k~~Va~~E~~eGP~V~p 289 (374)
.+. .-|++|+.+||.. |.|++.+.+...+- +...+ .++++..|..||. +..
T Consensus 171 --gi~-~cl~Ie~~~~ks~y~lgd~I~G~I~f~~s~i~Ik~iel~LiR~Et~~--~~~~~~~e~~~i~k~eImdG~-p~r 244 (340)
T 2r51_A 171 --GIE-DCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTG--TGPNVYHENDTIAKYEIMDGA-PVR 244 (340)
T ss_dssp --EET-TTEEEEEEESCSEEETTCEEEEEEEEEEECSCEEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEEESC-CCT
T ss_pred --cCC-ceEEEEEEECcccccCCCeEEEEEEEEEeeceeEEEEEEEEEEEEEe--cCCCeeEEEEEEEEEEEecCC-ccC
Confidence 122 2388889998873 77888877765443 23322 4567888888884 477
Q ss_pred CCeEEEEEEEeecccCCcccceeeecccccccccccccceeeecCCCCCcceEEE-EEEEEEEEEEEccCCceeeEEeee
Q psy2090 290 GSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIV-VSYMVKVKLYLGALGGELSAELPF 368 (374)
Q Consensus 290 gstl~k~~~L~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIi-VSY~VKVkL~vs~~ggdv~~eLPF 368 (374)
|.++.=-+.|.|+ .|.+| .+++++++ |.|.+.+-++.+++. .....+|+
T Consensus 245 ge~IPirl~Lp~~----------------------~l~PT-------~~~~~~~fsV~Y~Lnlvl~~e~~~-~~~kq~pI 294 (340)
T 2r51_A 245 GESIPIRLFLAGY----------------------ELTPT-------MRDINKKFSVRYYLNLVLIDEEER-RYFKQQEV 294 (340)
T ss_dssp TCEEEEEEEGGGS----------------------CCCCC-------EEEETTTEEEEEEEEEEEEETTCC-EEEEEEEE
T ss_pred CCEEEEEEECCCC----------------------CCCCC-------ccccCCeEEEEEEEEEEEEeCCCc-EEEEEeeE
Confidence 8876544445442 46777 46678888 999999999998754 99999999
Q ss_pred eeeC
Q psy2090 369 ILMH 372 (374)
Q Consensus 369 ~Lmh 372 (374)
+|-.
T Consensus 295 ~L~R 298 (340)
T 2r51_A 295 VLWR 298 (340)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9864
No 5
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=99.06 E-value=1e-08 Score=101.03 Aligned_cols=207 Identities=14% Similarity=0.129 Sum_probs=138.2
Q ss_pred cccccCceEEEccc----ceeceeEEEEEeeeee--cCCCcccccCcccchheeeeeeeeecCCCCCCCCCcHHHHHHHh
Q psy2090 81 FPTISDGVVVFEED----YIQDRKVFGQVVCSFR--YGREEDEILGLNFQKELYLASEQIYPRSEKQHSSLTKMQDCLLK 154 (374)
Q Consensus 81 dpv~~dGVVlvDpe----ylk~rKVf~~l~caFR--YGreD~dVmGL~FrKdl~~~~~QvyPp~~~~~~~lT~lQerLlk 154 (374)
|.| .|.|.|+.. -++-+-|.+++...+. |.+.. .-|++-.+.++.||.. |
T Consensus 48 E~V--sG~V~I~~~~~gk~l~h~GIki~~~G~~e~~~~~~~--------~~~fls~~~eL~~~G~-----L--------- 103 (341)
T 2fau_A 48 ESV--SGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKSN--------THEFVNLVKELALPGE-----L--------- 103 (341)
T ss_dssp CCE--EEEEEEEESSSSCCEEESCEEEEEEEEEEECSTTCC--------EEEEEEEEEEEECSEE-----E---------
T ss_pred CEE--EEEEEEEECCCCCeeeEEEEEEEEEEEEEEEecCCC--------cEEEEEEEEEEcCCCc-----c---------
Confidence 789 999999865 4555556666655442 43321 2344455567766542 1
Q ss_pred hcCCCccceEEecCCCCCCCCCCCCCCCcceEEEEEEEEEcCCCccCCCccc-eeEeeeeeeeecCCCCCCCC-eeEEee
Q psy2090 155 KLGPKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRRS-TVALGIRKIQYAPSKNGRQP-CTVVRK 232 (374)
Q Consensus 155 KLG~nAyPF~f~lP~nlP~SPgp~d~GKpCGVdYeVKaf~a~~~deK~hKRn-sVrL~IRKIqyAP~~~g~~P-~aevsK 232 (374)
--| +.|||.|..|+.+|+| +.|+...|+|.|||-+ +|+|+ | +....|.+..+.+......| ..|+..
T Consensus 104 ~~g-~~fpF~F~~~~~~~eS----y~G~~~~IrY~vrv~i-----~R~~~-di~~~~eF~V~~~~~~p~~~~pi~~evgi 172 (341)
T 2fau_A 104 TQS-RSYDFEFMQVEKPYES----YIGANVRLRYFLKVTI-----VRRLT-DLVKEYDLIVHQLATYPDVNNSIKMEVGI 172 (341)
T ss_dssp CSC-EEEEEEECSCCCCSCC----EECSSEEEEEEEEEEE-----CCSSS-CEEEEEEEEECCCBCCCCCCCCEEEEEEE
T ss_pred CCC-cEEeeEeCCCCCCCcc----eEeeEEEEEEEEEEEE-----EecCc-ceeEEEEEEEEeCCCCCCCCCCeEEEEec
Confidence 135 8999999999999999 9999999999999999 89998 6 78888888876554322222 234333
Q ss_pred cceecCCceEEEEEecccc--------------------eEEEEEEEEeeEEEEEeC-CeEEEEEEEeeccCCCccCCCC
Q psy2090 233 DFMLSPGDLELEVTLDKQF--------------------RSVMAMVQQGVDVVLFQN-GQFRHSVDCVETQEGCPIQPGS 291 (374)
Q Consensus 233 ~F~mS~gpL~LEasLDKei--------------------KkIKV~V~Q~adV~lfs~-~~yk~~Va~~E~~eGP~V~pgs 291 (374)
+++|++|+.++|.. |.|++.+.+...+---.+ ..=.++++..|..||. +..|.
T Consensus 173 -----ed~L~ieF~~~ks~y~l~d~I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~~~e~~~i~k~eImDG~-p~rge 246 (341)
T 2fau_A 173 -----EDXLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGA-PVKGE 246 (341)
T ss_dssp -----TTTEEEEEEESCSEEETTCEEEEEEEEEEECSCEEEEEEEEEEEEEESCGGGCEEEEEEEEEEECCCC-------
T ss_pred -----cccEEEEEEEccccccCCCeEEEEEEEEEeccceEEEEEEEEEEEEEcCCCCeeeEEEEEEEEEEeCCC-ccCCC
Confidence 46789999998873 777777777654321111 1124578888988884 47777
Q ss_pred eEEEEEEEeecccCCcccceeeecccccccccccccceeeecCCCCCcceEEE-EEEEEEEEEEEcc
Q psy2090 292 SLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIV-VSYMVKVKLYLGA 357 (374)
Q Consensus 292 tl~k~~~L~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIi-VSY~VKVkL~vs~ 357 (374)
+..=.+.|.|+ .|.+| .+++++++ |.|.+.|.++..+
T Consensus 247 ~IPirl~Lp~~----------------------~l~PT-------~~~~~~~fsV~Y~Lnlvlvde~ 284 (341)
T 2fau_A 247 SIPIRLFLAGY----------------------DPTPT-------MRDVNKKFSVRYFLNLVLVDEE 284 (341)
T ss_dssp CEEEEEESTTT----------------------CCCCC-------EEEEETTEEEEEEEEEEEEETT
T ss_pred EEEEEEEcCCC----------------------CCCCc-------chhcCCeEEEEEEEEEEEEeCC
Confidence 75555555552 36666 45678888 9999999988875
No 6
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=83.76 E-value=12 Score=36.80 Aligned_cols=104 Identities=13% Similarity=0.262 Sum_probs=62.2
Q ss_pred eecceecCC-ceE--EEEEec---ccc--eEEEEEEEEeeEEEEEeCCe---EEEEEEEeeccCCCccCCCCeEEEEEEE
Q psy2090 231 RKDFMLSPG-DLE--LEVTLD---KQF--RSVMAMVQQGVDVVLFQNGQ---FRHSVDCVETQEGCPIQPGSSLQKVVYL 299 (374)
Q Consensus 231 sK~F~mS~g-pL~--LEasLD---Kei--KkIKV~V~Q~adV~lfs~~~---yk~~Va~~E~~eGP~V~pgstl~k~~~L 299 (374)
.+.+.+++| .+. +.+++. |.+ +.|+|.+.=.++.. |..++ |-+....+.. .| .+++|.+|.-.|.+
T Consensus 39 ~~~pvY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~-~~~~~~~~f~~~~~eL~~-pG-~L~~G~~fpF~F~l 115 (340)
T 2r51_A 39 EKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELY-YDRGNHHEFVSLVKDLAR-PG-EITQSQAFDFEFTH 115 (340)
T ss_dssp EEEEEEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEG-GGTTCCEEEEEEEEEEEC-SE-EECSCEEEEEEECS
T ss_pred eecCcCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEE-ecCCCcEEEEEEEEEecC-CC-ccCCCcEEeeEeCC
Confidence 344454443 332 445555 555 99999999887763 33332 2222222221 22 37777776667765
Q ss_pred eecccCCcccceeeecccccccccccccceeeecCCCCCcceEEE--EEEEEEEEEEEccCCceeeEEeeeeeeC
Q psy2090 300 TPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIV--VSYMVKVKLYLGALGGELSAELPFILMH 372 (374)
Q Consensus 300 ~P~l~~nr~krglALDG~LK~eDt~nLASSTi~~~~~~ke~~GIi--VSY~VKVkL~vs~~ggdv~~eLPF~Lmh 372 (374)
+. ++.+| ..|.. |.|.|||.+.-+. .|+..+.+|+...
T Consensus 116 p~-----------------------~l~eS----------y~G~~g~IrY~vkv~i~Rp~--~di~~~~eF~V~~ 155 (340)
T 2r51_A 116 VE-----------------------KPYES----------YTGQNVKLRYFLRATISRRL--NDVVKEMDIVVHT 155 (340)
T ss_dssp BC-----------------------CCSCC----------EECSSEEEEEEEEEEECCSS--CCEEEEEEEEEEC
T ss_pred CC-----------------------CCCcC----------eEeeeEEEEEEEEEEEEecC--CCceEEEEEEEEe
Confidence 54 56666 44443 8999998554443 4999999999864
No 7
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=70.13 E-value=69 Score=31.33 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=54.5
Q ss_pred EEEEecc---cc--eEEEEEEEEeeEEEEEeCCe---EEEEEEEeeccCCCccCCCCeEEEEEEEeecccCCcccceeee
Q psy2090 243 LEVTLDK---QF--RSVMAMVQQGVDVVLFQNGQ---FRHSVDCVETQEGCPIQPGSSLQKVVYLTPELDHNKNRRGLAL 314 (374)
Q Consensus 243 LEasLDK---ei--KkIKV~V~Q~adV~lfs~~~---yk~~Va~~E~~eGP~V~pgstl~k~~~L~P~l~~nr~krglAL 314 (374)
+.+++.+ .+ +.|||.+.=.+++. |+.++ |-+.+..+.. .| .+++|.+|.-.|.+.|
T Consensus 54 V~I~~~~~gk~l~h~GIki~~~G~~e~~-~~~~~~~~fls~~~eL~~-~G-~L~~g~~fpF~F~~~~------------- 117 (341)
T 2fau_A 54 VNLAFKQPGKRLEHQGIRIEFVGQIELF-NDKSNTHEFVNLVKELAL-PG-ELTQSRSYDFEFMQVE------------- 117 (341)
T ss_dssp EEEEESSSSCCEEESCEEEEEEEEEEEC-STTCCEEEEEEEEEEEEC-SE-EECSCEEEEEEECSCC-------------
T ss_pred EEEEECCCCCeeeEEEEEEEEEEEEEEE-ecCCCcEEEEEEEEEEcC-CC-ccCCCcEEeeEeCCCC-------------
Confidence 3345544 44 89999998888774 33222 3333333322 22 3667755766776544
Q ss_pred cccccccccccccceeeecCCCCCcceEEE--EEEEEEEEEEEccCCceeeEEeeeeee
Q psy2090 315 DGQLKNENYKYLASSTLLASPDPKDAFGIV--VSYMVKVKLYLGALGGELSAELPFILM 371 (374)
Q Consensus 315 DG~LK~eDt~nLASSTi~~~~~~ke~~GIi--VSY~VKVkL~vs~~ggdv~~eLPF~Lm 371 (374)
.+..| ..|.. |.|.|||.+.-+. .|++.+.+|+..
T Consensus 118 ----------~~~eS----------y~G~~~~IrY~vrv~i~R~~--~di~~~~eF~V~ 154 (341)
T 2fau_A 118 ----------KPYES----------YIGANVRLRYFLKVTIVRRL--TDLVKEYDLIVH 154 (341)
T ss_dssp ----------CCSCC----------EECSSEEEEEEEEEEECCSS--SCEEEEEEEEEC
T ss_pred ----------CCCcc----------eEeeEEEEEEEEEEEEEecC--cceeEEEEEEEE
Confidence 45555 44544 8899988554433 499999999864
No 8
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=18.42 E-value=27 Score=27.67 Aligned_cols=8 Identities=25% Similarity=0.144 Sum_probs=6.1
Q ss_pred CCCccceE
Q psy2090 157 GPKAYPFT 164 (374)
Q Consensus 157 G~nAyPF~ 164 (374)
|.+|||||
T Consensus 1 ~~~a~pft 8 (89)
T 1v5n_A 1 GSSGSSGT 8 (89)
T ss_dssp CCCCCCCC
T ss_pred CCcccccC
Confidence 67788875
No 9
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=15.58 E-value=30 Score=24.94 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=25.9
Q ss_pred CceEEEcccceeceeEEEEEeeeeecCCCcccccCcccch
Q psy2090 86 DGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQK 125 (374)
Q Consensus 86 dGVVlvDpeylk~rKVf~~l~caFRYGreD~dVmGL~FrK 125 (374)
|||+++|++ |+=+|+.=.+.=-+|....|++|-++..
T Consensus 30 ~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~ 66 (125)
T 3fc7_A 30 DGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSA 66 (125)
T ss_dssp CEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGG
T ss_pred CeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHH
Confidence 788999976 5666654333334788888899988754
No 10
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=14.05 E-value=1.4e+02 Score=29.69 Aligned_cols=29 Identities=21% Similarity=0.091 Sum_probs=19.9
Q ss_pred cccceeeecCCCCCcceEEEEEEEEEEEE
Q psy2090 325 YLASSTLLASPDPKDAFGIVVSYMVKVKL 353 (374)
Q Consensus 325 nLASSTi~~~~~~ke~~GIiVSY~VKVkL 353 (374)
||+||-.+.++.+.+.----|.|.||+.+
T Consensus 119 ~lPsSf~lqp~~~~eGk~g~VrY~VKa~i 147 (392)
T 1suj_A 119 NLPCSVTLQPGPDDTGKSCGVDFEVKAFC 147 (392)
T ss_dssp SCCCCEEECCCTTCCSCCEEEEEEEEEEE
T ss_pred CCCCeEEeccCCccCCCceeEEEEEEEEE
Confidence 89999877765443322224799999966
Done!