RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2090
(374 letters)
>gnl|CDD|215866 pfam00339, Arrestin_N, Arrestin (or S-antigen), N-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with C-terminal domain.
Length = 148
Score = 81.2 bits (201), Expect = 1e-18
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 86 DGVVVFEED-YIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHSS 144
G V+ I+ R V + R G EE E++GL F+K++Y K+ +
Sbjct: 19 SGKVLLTTKKPIKARAVKITLKGRARTGWEESEVMGLTFRKQIY-----PTVNYSKE--T 71
Query: 145 LTKMQDCLLKK--------LGPKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGE 196
Q+ L KK G A+PF+F + P PPS G+P G+ Y VK+ + +
Sbjct: 72 YLDTQERLWKKKDGSNELPAGTHAFPFSFELPPNCPPS----FEGQPGGIRYEVKVEL-D 126
Query: 197 NETDRSHRRSTVALGIRKIQYA 218
+ H+R V IRK+
Sbjct: 127 RPWKKDHKRKKVFTVIRKLDLN 148
>gnl|CDD|214976 smart01017, Arrestin_C, Arrestin (or S-antigen), C-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with N-terminal domain. Arrestins comprise a family of
closely-related proteins that includes beta-arrestin-1
and -2, which regulate the function of beta-adrenergic
receptors by binding to their phosphorylated forms,
impairing their capacity to activate G(S) proteins; Cone
photoreceptors C-arrestin (arrestin-X). which could bind
to phosphorylated red/green opsins; and Drosophila
phosrestins I and II, which undergo light-induced
phosphorylation, and probably play a role in
photoreceptor transduction.
Length = 142
Score = 52.7 bits (127), Expect = 1e-08
Identities = 34/159 (21%), Positives = 49/159 (30%), Gaps = 39/159 (24%)
Query: 237 SPGDLELEVTLDKQ---------------------FRSVMAMVQQGVDVVLFQNGQFRHS 275
G L LEV+L K+ + + + Q V V
Sbjct: 1 WSGPLSLEVSLPKKGYVPGETIPVTIKITNLSKKTVKKIKVSLVQTVTYVS----SDGPV 56
Query: 276 VDCVETQEGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASP 335
+ + +L K + P L NK++ +GQLK S
Sbjct: 57 KRSLAEKSKEKKADRKTLVKELDGGPVLPGNKDKF----EGQLKVP-------PLPPTS- 104
Query: 336 DPKDAFGIVVSYMVKVKLYLGALGGELSAELPFILMHPK 374
+ I V Y +KVKL L EL ELP +
Sbjct: 105 --RTCRLIKVEYKLKVKLRLSGKHSELRLELPITIGTVP 141
>gnl|CDD|217215 pfam02752, Arrestin_C, Arrestin (or S-antigen), C-terminal domain.
Ig-like beta-sandwich fold. Scop reports duplication
with N-terminal domain.
Length = 136
Score = 39.6 bits (93), Expect = 4e-04
Identities = 30/163 (18%), Positives = 48/163 (29%), Gaps = 53/163 (32%)
Query: 237 SPGDLELEVTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHS 275
G + L V+L K+ + + + Q V + +
Sbjct: 1 WSGPVSLSVSLPKKGYVPGETIPITVEIDNQSSKKIKKIKISLVQQVTYKAKTPLRRTKN 60
Query: 276 VDC-VETQEGCPIQPGSS--LQKVVYLT-PELDHNKNRRGLALDGQLKNENYKYLASSTL 331
+ V +E ++PGSS +K + L P L S+
Sbjct: 61 EERVVAKEESGGVEPGSSDKFEKELSLQIPTS----------------------LPPSST 98
Query: 332 LASPDPKDAFGIVVSYMVKVKLYLGALGGELSAELPFILMHPK 374
I VSY +KV + L EL ELP +
Sbjct: 99 ------TKCKIIKVSYKLKVTVDLSGSHSELRLELPITIGTSP 135
>gnl|CDD|238139 cd00227, CPT, Chloramphenicol (Cm) phosphotransferase (CPT).
Cm-inactivating enzyme; modifies the primary (C-3)
hydroxyl of the antibiotic. Related structurally to
shikimate kinase II.
Length = 175
Score = 30.9 bits (70), Expect = 0.70
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 231 RKDFMLSPGDLELEVTLDKQFRSVMAMVQQG----VDVVLFQNGQFRHSVDCVETQEGCP 286
D +SPG E + + +V AM + G D V DC + G
Sbjct: 56 DGDGGVSPGP-EFRLLEGAWYEAVAAMARAGANVIADDVFLGRAAL---QDCWRSFVGLD 111
Query: 287 I 287
+
Sbjct: 112 V 112
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Validated.
Length = 219
Score = 30.8 bits (70), Expect = 0.86
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 99 RKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEK 140
RK G ++C + E + LGLNF E L ++Y + K
Sbjct: 46 RKNAGGLIC-YATSNSEGKTLGLNFLAE-ILKRHELYRKLVK 85
>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
production and conversion].
Length = 608
Score = 29.7 bits (67), Expect = 2.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 145 LTKMQDCLLKKLGPKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGENE 198
+T+M +L+KLG + P PG + PC T Y++ F + E
Sbjct: 160 MTRMGKEVLEKLGDDGNFVKCVHSVGKPLDPGQKDVAWPCNETKYIRHFPEDRE 213
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 29.2 bits (66), Expect = 2.9
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 241 LELEV-TLDKQFRSVMAMVQQGVDVVLFQN---GQFRHSVDCV 279
+E+EV TLD Q + GVD VL N R +V V
Sbjct: 197 IEVEVDTLD-QLEEALE---LGVDAVLLDNMTPDTLREAVAIV 235
>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 1525
Score = 29.6 bits (66), Expect = 3.1
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 62 NLKVLELLSEDLVEFLQLVF-----PTISDGVVVFEEDYIQDRKVFGQVVCSFRYGR-EE 115
N+ L + ED + F + D + ++DR+ F + + YGR E
Sbjct: 147 NIDTLLEIVEDKWPTIWKSFNLQIKNLVIDVLYHELLSSVEDRRKFSKEESEWLYGRVEN 206
Query: 116 DEILGLNFQKELYLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFT 164
E L L L+ I ++K+ T ++D ++ L K P
Sbjct: 207 SEYLVLRK---LFAEFVDIGLETDKKIEKQT-LEDSFVRMLDFKEDPVL 251
>gnl|CDD|214796 smart00737, ML, Domain involved in innate immunity and lipid
metabolism. ML (MD-2-related lipid-recognition) is a
novel domain identified in MD-1, MD-2, GM2A, Npc2 and
multiple proteins of unknown function in plants, animals
and fungi. These single-domain proteins were predicted
to form a beta-rich fold containing multiple strands,
and to mediate diverse biological functions through
interacting with specific lipids.
Length = 119
Score = 28.1 bits (63), Expect = 3.2
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 226 PCTVVRKDFMLSPGDLELEVTLDKQFRSVMAMVQQGVDVVLFQNGQFRHSVDCVETQEGC 285
PC VR + + TL++ + +V + + + + C T C
Sbjct: 19 PCPPVRG----KTLTISISFTLNEDISKLKVVVHVKIGGIEVPIPGETYDL-CKLTGSKC 73
Query: 286 PIQPGSSLQKVVYLTP 301
PI+ G + V Y
Sbjct: 74 PIEKG---ETVNYTNS 86
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 28.5 bits (64), Expect = 7.3
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 75 EFLQLVFP--TISDGVVVFEEDYIQDRKVFGQVVCSFRYGREED 116
E ++ VFP T+ G VV++ D I ++ G+ + Y R+ED
Sbjct: 400 EGMEGVFPELTMVRGTVVWDGDDINAKRGRGEFLRGRGYERDED 443
>gnl|CDD|221000 pfam11145, DUF2921, Protein of unknown function (DUF2921). This
eukaryotic family of proteins has no known function.
Length = 871
Score = 28.2 bits (63), Expect = 9.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 2 SLVLSLRYLVLLILVVKCH--SLSYRNLLMLRVLAPLYTLNLI 42
SL LS + L + VK H L + +L+ML V A Y L+
Sbjct: 602 SLTLSCVFAGLQLFHVKSHPDVLPFVSLVMLGVQALGYMTPLV 644
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.401
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,053,419
Number of extensions: 1867765
Number of successful extensions: 1290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1287
Number of HSP's successfully gapped: 14
Length of query: 374
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 276
Effective length of database: 6,590,910
Effective search space: 1819091160
Effective search space used: 1819091160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)