RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2090
(374 letters)
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment,
SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A
1ayr_A
Length = 380
Score = 308 bits (790), Expect = e-103
Identities = 116/340 (34%), Positives = 187/340 (55%), Gaps = 39/340 (11%)
Query: 68 LLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKEL 127
L D ++ ++ V P DGVV+ + + ++ ++V+ + C+FRYG+E+ +++GL+F+++L
Sbjct: 36 LGKRDYIDHVERVEPV--DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDL 93
Query: 128 YLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEP 183
Y + Q++P + T++Q+ L+KKLG YPF P S P P + G+
Sbjct: 94 YFSQVQVFPPVGAS-GATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKS 152
Query: 184 CGVTYYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGD 240
CGV + +K F + E D+ ++S+V L IRK+Q+AP G QP F +S
Sbjct: 153 CGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKP 212
Query: 241 LELEVTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCV 279
L L V+L K+ + + +V+Q +VVL+ + + +V
Sbjct: 213 LRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAE 272
Query: 280 ETQEGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKD 339
E QE P P SSL K + L P L +N+ RRG+ALDG++K+E+ LASST++ K
Sbjct: 273 EAQEKVP--PNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTN-LASSTIIKEGIDKT 329
Query: 340 AFGIVVSYMVKVKLYLGALGG-----ELSAELPFILMHPK 374
GI+VSY +KVKL + L G E++ E+PF LMHP+
Sbjct: 330 VMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 369
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing,
signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11
b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A
2wtr_B 3gc3_A 3p2d_A
Length = 393
Score = 303 bits (777), Expect = e-101
Identities = 137/339 (40%), Positives = 201/339 (59%), Gaps = 37/339 (10%)
Query: 68 LLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKEL 127
L D V+ + LV P DGVV+ + +Y+++R+V+ + C+FRYGRE+ ++LGL F+K+L
Sbjct: 22 LGKRDFVDHIDLVEPV--DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDL 79
Query: 128 YLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEP 183
++A+ Q +P + + LT++Q+ L+KKLG AYPFTF I P P S PGP++TG+
Sbjct: 80 FVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKA 139
Query: 184 CGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLEL 243
CGV Y VK F EN ++ H+R++V L IRK+QYAP + G QP + F++S L L
Sbjct: 140 CGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHL 199
Query: 244 EVTLDKQF---------------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQ 282
E +LDK+ + + V+Q D+ LF Q++ V E
Sbjct: 200 EASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEAD 259
Query: 283 EGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFG 342
+ + P S+ KV LTP L +N+ +RGLALDG+LK+E+ LASSTLL ++ G
Sbjct: 260 D--TVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTN-LASSTLLREGANREILG 316
Query: 343 IVVSYMVKVKLYLGALG-------GELSAELPFILMHPK 374
I+VSY VKVKL + G +++ ELPF LMHPK
Sbjct: 317 IIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPK 355
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A
{Ambystoma tigrinum}
Length = 392
Score = 300 bits (768), Expect = 1e-99
Identities = 126/326 (38%), Positives = 190/326 (58%), Gaps = 37/326 (11%)
Query: 81 FPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEK 140
DGVV+ + +Y++DRKVF + C+FRYGR++ +++G++F+K+LY + Q+YP +
Sbjct: 32 HVEPVDGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSFRKDLYSLATQVYP--PE 89
Query: 141 QHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----PGPDETGEPCGVTYYVKLFVGE 196
LT +Q+ L+KKLG AYPF F + P S PGPD+TG+ CGV + VK F E
Sbjct: 90 TKEPLTPLQEKLMKKLGAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFCAE 149
Query: 197 NETDRSHRRSTVALGIRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQF----- 251
N ++ H+R++V L IRK+Q+AP+ G P T + + FMLS L LE +LDK+
Sbjct: 150 NLEEKIHKRNSVQLVIRKVQFAPANLGVAPKTEITRQFMLSDRPLHLEASLDKEIYYHGE 209
Query: 252 ----------------RSVMAMVQQGVDVVLFQNGQFRHSVDCVETQEGCPIQPGSSLQK 295
+ + +V+Q DVVLF ++ +V ET + + S+L K
Sbjct: 210 PINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKYVKTVCAEETND--TVAANSTLSK 267
Query: 296 VVYLTPELDHNKNRRGLALDGQLKNENYKYLASSTLLASPDPKDAFGIVVSYMVKVKLYL 355
+TP L +N+ +RGLALDG+LK+E+ LAS+T++ K+ GI+VSY VKV L +
Sbjct: 268 TFSVTPMLANNREKRGLALDGKLKHEDTN-LASTTVIRPGMDKEVLGILVSYKVKVHLVV 326
Query: 356 GALG-------GELSAELPFILMHPK 374
G +++ ELP LMHPK
Sbjct: 327 ARGGILGDLTSSDVAVELPLTLMHPK 352
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 5e-05
Identities = 67/397 (16%), Positives = 111/397 (27%), Gaps = 136/397 (34%)
Query: 5 LSLRYLVLLILVVKCH-SLSYRNLLMLRVLAPLYTLNLIVLKNLKLGVLESFG---NQMV 60
S R L L H SL + +L P T + + L+ E F +
Sbjct: 4 YSTRPLTLS------HGSLEHV------LLVP--TASFFIASQLQ----EQFNKILPEPT 45
Query: 61 RNLK-------VLELLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGR 113
EL+ + FL V V V F
Sbjct: 46 EGFAADDEPTTPAELVGK----FLGYV-----------------SSLVEPSKVGQF---- 80
Query: 114 EEDEILGL---NFQKELYLASEQIYPRSEKQHS---SLTKMQDCLLKKLGP--KAYPFTF 165
D++L L F+ YL I H+ L + D L K K Y T
Sbjct: 81 --DQVLNLCLTEFENC-YLEGNDI-------HALAAKLLQENDTTLVKTKELIKNY-ITA 129
Query: 166 NITPAAPPSPGPD-------ETGEPCGVTYYVKLFV-----GENET--DRSHRRSTVALG 211
I P + G +L G + +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGN-------AQLVAIFGGQGNTDDYFEE---------- 172
Query: 212 IRKIQYAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQFRSVMAMVQQGVDVVLF-QNG 270
+R + Y +V D + + L L + + QG++++ + +N
Sbjct: 173 LRDL-YQTYH------VLV-GDLIKFSAET-LS-ELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 271 QFRHSVDCVETQEGCPIQ-PGSSL-QKVVY--------LTPELDHNKNRRGLALDGQLKN 320
D + + PI P + Q Y TP + +G Q
Sbjct: 223 SNTPDKDYLLS---IPISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQ--- 275
Query: 321 ENYKYLASSTLLASPDPKDAFGIVVSYMVKVKLYLGA 357
L ++ +A D ++F + V + V ++G
Sbjct: 276 ----GLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Score = 38.5 bits (89), Expect = 0.004
Identities = 59/333 (17%), Positives = 91/333 (27%), Gaps = 147/333 (44%)
Query: 101 VF-GQVVCSFRYGREE---DEILGLNFQKELYLASEQIYPRSEKQHSSLTKMQDCLLKKL 156
+F GQ G + +E+ ++LY Q Y L K L +L
Sbjct: 159 IFGGQ-------GNTDDYFEEL------RDLY----QTYHVLVGD---LIKFSAETLSEL 198
Query: 157 ------GPKAYPFTFNI-----TPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRR 205
K + NI P+ P Y+
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPD------------KDYL-------------LS 233
Query: 206 STVAL-GIRKIQ---YAPSKNGRQPCTVVRKDFMLSPGDLELEVTLDKQFRS-------- 253
++ I IQ Y V K +PG+L +
Sbjct: 234 IPISCPLIGVIQLAHYV----------VTAKLLGFTPGELR------SYLKGATGHSQGL 277
Query: 254 VMAMVQQGVD-------------VVLFQNG-----QFRHSV-------DCVETQEGCP-- 286
V A+ D VLF G + ++ D +E EG P
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 287 ---IQ--PGSSLQKVVYLTPELDHNKNRRGLALDGQ----LKN--ENYKYLASSTLLASP 335
I +Q V T N + L Q L N +N +++ P
Sbjct: 338 MLSISNLTQEQVQDYVNKT-----NSH---LPAGKQVEISLVNGAKNL-------VVSGP 382
Query: 336 DPKDAFGIVVSYMVKVKLYLGALGGELSAELPF 368
P+ +G + + K K A G + +PF
Sbjct: 383 -PQSLYG-LNLTLRKAK----APSGLDQSRIPF 409
Score = 31.6 bits (71), Expect = 0.56
Identities = 51/298 (17%), Positives = 85/298 (28%), Gaps = 114/298 (38%)
Query: 42 IVLKNLK-LGVLESFGNQMVRNLKVLELLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRK 100
IV+ N L + FG + + ++ + ++F TI DG + E K
Sbjct: 1664 IVINNPVNLTIH--FGGEKGKRIREN---------YSAMIFETIVDGKLKTE-------K 1705
Query: 101 VFGQVV-----CSFRYGREEDEILGL--NFQKELYLASEQIYPRSEKQHSSLTKMQDCLL 153
+F ++ +FR E +L Q L L + + L
Sbjct: 1706 IFKEINEHSTSYTFR---SEKGLLSATQFTQPALTLMEKAAF---------------EDL 1747
Query: 154 KKLGPKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVAL--- 210
K G TF A G +GE AL
Sbjct: 1748 KSKGLIPADATF-----A---------GHS----------LGEY----------AALASL 1773
Query: 211 -GIRKIQYAPSKNGRQPCTVVRKDFMLSPGDL-ELEVTLDKQFRSVMAM--VQQGVDVVL 266
+ I+ VV G ++ V D+ RS M + G
Sbjct: 1774 ADVMSIESL--------VEVVFY-----RGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 267 FQNGQFRHSVDCVETQEGCPIQ------PGSSLQKVV--------YLTPELDHNKNRR 310
F ++ V+ V + G ++ Q V +T L+ K ++
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQ--QYVAAGDLRALDTVTNVLNFIKLQK 1876
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.005
Identities = 52/295 (17%), Positives = 97/295 (32%), Gaps = 87/295 (29%)
Query: 86 DGVVVFEEDYIQD----------RKVFGQVVCSFRYGREEDEILGL-NFQKELYLASEQI 134
D + VFE+ ++ + + + + E D I+ + +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSK--------EEIDHIIMSKDAVSGTLRLFWTL 71
Query: 135 YPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPSPGPDETGEPCGVTYYVKLFV 194
KQ + K + +L+ Y F SP E +P +T ++++
Sbjct: 72 ---LSKQEEMVQKFVEEVLR----INYKFLM--------SPIKTEQRQPSMMT---RMYI 113
Query: 195 GENETDRSHRRSTVALGIRKIQYAPSKNGR-QPCTVVRKDFM-LSPGDLELEVTLD---- 248
+ DR + + V +A R QP +R+ + L P V +D
Sbjct: 114 --EQRDRLYNDNQV--------FAKYNVSRLQPYLKLRQALLELRPAKN---VLIDGVLG 160
Query: 249 --KQFRSVMA-MVQQGVDVVL-FQNGQFRHSVDCVETQEGCPIQPGSSLQKVVY-----L 299
K + +A V V F ++ + E LQK++Y
Sbjct: 161 SGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNW 213
Query: 300 TPELDHNKNRR------GLALDGQLKNENYKYLASSTLL-----ASPDPKDAFGI 343
T DH+ N + L LK++ Y+ + LL + +AF +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCLLVLLNVQNAKAWNAFNL 264
Score = 30.6 bits (68), Expect = 1.1
Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 50/140 (35%)
Query: 3 LVLSLRYLVLLILVVKCHSLSYRNLLMLRVLAPLYTLNLIVLKNLKLGVLESFGNQMVRN 62
+ L R+L I H + N A LN L L+ + + N
Sbjct: 496 VFLDFRFLEQKI----RHDSTAWN-------ASGSILNT-------LQQLKFYKPYICDN 537
Query: 63 LKVLELLSEDLVEFLQLVFPTISDGVVVFEE-DYIQDRKVFGQVVCSFRYGREEDEILGL 121
E L +++FL P I + ++ + D ++ + L
Sbjct: 538 DPKYERLVNAILDFL----PKIEENLICSKYTDLLR---------------------IAL 572
Query: 122 NFQKELYLASEQIYPRSEKQ 141
+ E I+ + KQ
Sbjct: 573 MAE------DEAIFEEAHKQ 586
Score = 30.6 bits (68), Expect = 1.1
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 35/114 (30%)
Query: 263 DVVLFQNGQFRHSVDCVETQEGCPIQPGSSLQKVVYLTPELDH----------------- 305
D++ F + DC + Q+ + K + E+DH
Sbjct: 20 DILSVFEDAFVDNFDCKDVQD---------MPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 306 --NKNRRGLA--LDGQLKNENYKYLASSTLLASPDPKDAFGIVVSYMVKV-KLY 354
+K + ++ L+ NYK+L S + + + Y+ + +LY
Sbjct: 71 LLSKQEEMVQKFVEEVLR-INYKFLMSPI---KTEQRQPSMMTRMYIEQRDRLY 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.006
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 139 EKQHSSLTKMQDCLLKKLGPKAYP-FTFNIT 168
EKQ +L K+Q L K + P T
Sbjct: 18 EKQ--ALKKLQASL-KLYADDSAPALAIKAT 45
Score = 30.3 bits (67), Expect = 0.51
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 319 KNENYKYLASSTLLASPDPKDAFGI 343
K K L +S L + D A I
Sbjct: 19 KQA-LKKLQASLKLYADDSAPALAI 42
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper
motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 28.4 bits (63), Expect = 2.8
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 170 AAPPSPGPDETGEP-CGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQPCT 228
+ G T + + V+ F+G E V +R+I A + + T
Sbjct: 12 SGLVPRGSHMTEDSILHQLFIVR-FLGSMEVKSDDHPDVVYETMRQILAARAIHNIFRMT 70
Query: 229 VVRKDFMLSPGDLELEVTLDKQFRSVMA 256
+++ L+L +D Q +
Sbjct: 71 ES--HLLVTCDCLKL---IDPQTQVTRL 93
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 28.0 bits (63), Expect = 6.4
Identities = 8/12 (66%), Positives = 9/12 (75%), Gaps = 2/12 (16%)
Query: 281 TQEGCPIQPGSS 292
TQ CPI PGS+
Sbjct: 79 TQ--CPIAPGST 88
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 27.8 bits (63), Expect = 6.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 94 DYIQDRKVFGQVVCSF 109
Y++ R FG+ V F
Sbjct: 269 QYVKQRTAFGKRVSEF 284
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 27.7 bits (62), Expect = 8.5
Identities = 5/12 (41%), Positives = 7/12 (58%), Gaps = 2/12 (16%)
Query: 281 TQEGCPIQPGSS 292
+Q C I PG +
Sbjct: 79 SQ--CAINPGET 88
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 27.4 bits (61), Expect = 8.5
Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 2/12 (16%)
Query: 281 TQEGCPIQPGSS 292
TQ CPI PG +
Sbjct: 143 TQ--CPIAPGDT 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.401
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,608,957
Number of extensions: 338289
Number of successful extensions: 702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 21
Length of query: 374
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 279
Effective length of database: 4,049,298
Effective search space: 1129754142
Effective search space used: 1129754142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)