RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2090
         (374 letters)



>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus),
           beta-arrestin 1 [TaxId: 9913]}
          Length = 171

 Score =  206 bits (526), Expect = 1e-66
 Identities = 74/164 (45%), Positives = 112/164 (68%), Gaps = 7/164 (4%)

Query: 61  RNLKV-LELLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEIL 119
            N K+ + L   D V+ + LV P   DGVV+ + +Y+++R+V+  + C+FRYGRE+ ++L
Sbjct: 10  PNGKLTVYLGKRDFVDHIDLVEPV--DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVL 67

Query: 120 GLNFQKELYLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----P 175
           GL F+K+L++A+ Q +P + +    LT++Q+ L+KKLG  AYPFTF I P  P S    P
Sbjct: 68  GLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQP 127

Query: 176 GPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAP 219
           GP++TG+ CGV Y VK F  EN  ++ H+R++V L IRK+QYAP
Sbjct: 128 GPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAP 171


>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
           arrestin [TaxId: 9913]}
          Length = 173

 Score =  199 bits (507), Expect = 9e-64
 Identities = 55/167 (32%), Positives = 99/167 (59%), Gaps = 11/167 (6%)

Query: 61  RNLKV-LELLSEDLVEFLQLVFPTISDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEIL 119
           R+  V + L   D ++ ++ V P   DGVV+ + + ++ ++V+  + C+FRYG+E+ +++
Sbjct: 9   RDKSVTIYLGKRDYIDHVERVEPV--DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVM 66

Query: 120 GLNFQKELYLASEQIYPRSEKQHSSLTKMQDCLLKKLGPKAYPFTFNITPAAPPS----P 175
           GL+F+++LY +  Q++P       + T++Q+ L+KKLG   YPF        P S    P
Sbjct: 67  GLSFRRDLYFSQVQVFPPVGAS-GATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQP 125

Query: 176 GPDETGEPCGVTYYVKLFVGEN---ETDRSHRRSTVALGIRKIQYAP 219
            P + G+ CGV + +K F   +   E D+  ++S+V L IRK+Q+AP
Sbjct: 126 APQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKVQHAP 172


>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual
           arrestin [TaxId: 9913]}
          Length = 211

 Score =  140 bits (354), Expect = 1e-40
 Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 29/178 (16%)

Query: 223 GRQPCTVVRKDFMLSPGDLELEVTLDKQF---------------------RSVMAMVQQG 261
           G QP       F +S   L L V+L K+                      + +  +V+Q 
Sbjct: 3   GPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQV 62

Query: 262 VDVVLFQNGQFRHSVDCVETQEGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLKNE 321
            +VVL+ +  +  +V   E QE  P  P SSL K + L P L +N+ RRG+ALDG++K+E
Sbjct: 63  TNVVLYSSDYYIKTVAAEEAQEKVP--PNSSLTKTLTLVPLLANNRERRGIALDGKIKHE 120

Query: 322 NYKYLASSTLLASPDPKDAFGIVVSYMVKVKLYLGALGGEL-----SAELPFILMHPK 374
           +   LASST++     K   GI+VSY +KVKL +  L GEL     + E+PF LMHP+
Sbjct: 121 DTN-LASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ 177


>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),
           beta-arrestin 1 [TaxId: 9913]}
          Length = 218

 Score =  127 bits (321), Expect = 9e-36
 Identities = 65/182 (35%), Positives = 92/182 (50%), Gaps = 31/182 (17%)

Query: 221 KNGRQPCTVVRKDFMLSPGDLELEVTLDKQF---------------------RSVMAMVQ 259
           + G QP     + F++S   L LE +LDK+                      + +   V+
Sbjct: 2   RPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVR 61

Query: 260 QGVDVVLFQNGQFRHSVDCVETQEGCPIQPGSSLQKVVYLTPELDHNKNRRGLALDGQLK 319
           Q  D+ LF   Q++  V   E  +     P S+  KV  LTP L +N+ +RGLALDG+LK
Sbjct: 62  QYADICLFNTAQYKCPVAMEEADDTVA--PSSTFCKVYTLTPFLANNREKRGLALDGKLK 119

Query: 320 NENYKYLASSTLLASPDPKDAFGIVVSYMVKVKLYLGALG-------GELSAELPFILMH 372
           +E+   LASSTLL     ++  GI+VSY VKVKL +   G        +++ ELPF LMH
Sbjct: 120 HED-TNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMH 178

Query: 373 PK 374
           PK
Sbjct: 179 PK 180


>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
           [TaxId: 1639]}
          Length = 384

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 18  KCHSLSYRNLLMLRVLAPLYTLNLIVLKNLKLGVLESFGNQMVRNLKVLEL 68
              +L + N+  +  ++ L  L  +   N K+  + S  N  + N+  L  
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLAN--LTNINWLSA 358


>d1gkma_ a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseudomonas
           putida [TaxId: 303]}
          Length = 509

 Score = 26.1 bits (57), Expect = 9.1
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 166 NITPAAPPSPGPDETGEPCGVTYYVKLFVGENETDRSHRRSTVALGIRKIQYAPSKNGRQ 225
            + P  P       +G+   + +   + +GE +     +  +          A +  G +
Sbjct: 129 EVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARYKGQWLSAT-------EALAVAGLE 181

Query: 226 PCTVVRKDFM 235
           P T+  K+ +
Sbjct: 182 PLTLAAKEGL 191


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,340,113
Number of extensions: 62389
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 7
Length of query: 374
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,213,086
Effective search space: 348155682
Effective search space used: 348155682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)