Query psy2094
Match_columns 341
No_of_seqs 140 out of 1187
Neff 7.1
Searched_HMMs 46136
Date Sat Aug 17 00:06:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02724 Molybdenum cofactor s 100.0 2.9E-63 6.3E-68 528.5 29.1 277 21-330 516-803 (805)
2 KOG2362|consensus 100.0 2.5E-61 5.3E-66 443.8 18.6 295 16-332 36-332 (336)
3 COG3217 Uncharacterized Fe-S p 100.0 2.4E-60 5.1E-65 432.5 21.1 265 23-334 2-266 (270)
4 PF03476 MOSC_N: MOSC N-termin 100.0 1.3E-31 2.9E-36 222.9 9.1 116 22-152 1-118 (120)
5 PF03473 MOSC: MOSC domain; I 100.0 1.2E-28 2.7E-33 208.1 8.0 121 191-329 11-133 (133)
6 KOG2142|consensus 99.2 2.6E-12 5.6E-17 129.8 -1.2 204 23-280 464-671 (728)
7 PRK14499 molybdenum cofactor b 98.7 6.6E-08 1.4E-12 92.5 8.9 105 199-331 203-307 (308)
8 PRK11536 6-N-hydroxylaminopuri 98.2 1.1E-05 2.4E-10 73.9 10.2 109 199-333 55-166 (223)
9 COG2258 Uncharacterized protei 98.0 2.3E-05 4.9E-10 70.9 8.0 107 199-334 55-164 (210)
10 KOG2362|consensus 56.0 11 0.00025 36.1 3.2 125 21-166 54-184 (336)
11 TIGR03635 S17_bact 30S ribosom 34.5 37 0.0008 25.5 2.4 23 316-338 44-66 (71)
12 KOG3347|consensus 33.1 22 0.00047 31.1 1.1 28 226-253 3-40 (176)
13 CHL00142 rps17 ribosomal prote 31.2 43 0.00094 26.0 2.4 24 315-338 45-68 (84)
14 PRK05610 rpsQ 30S ribosomal pr 30.6 46 0.00099 25.9 2.4 23 316-338 49-71 (84)
15 COG2895 CysN GTPases - Sulfate 29.2 33 0.00072 34.0 1.8 30 307-336 236-265 (431)
16 COG0186 RpsQ Ribosomal protein 28.9 49 0.0011 25.9 2.3 19 319-337 54-72 (87)
17 KOG0462|consensus 27.0 68 0.0015 33.7 3.6 52 270-335 233-285 (650)
18 PRK08572 rps17p 30S ribosomal 23.7 72 0.0016 26.1 2.5 25 314-338 70-95 (108)
19 TIGR03630 arch_S17P archaeal r 22.4 77 0.0017 25.6 2.4 23 316-338 70-93 (102)
20 PF12791 RsgI_N: Anti-sigma fa 21.3 71 0.0015 22.2 1.8 27 310-336 15-41 (56)
21 PF00366 Ribosomal_S17: Riboso 20.8 63 0.0014 24.0 1.5 27 312-338 35-61 (69)
22 CHL00112 rpl28 ribosomal prote 20.6 81 0.0018 23.1 2.0 11 224-234 24-34 (63)
23 PF05962 HutD: HutD; InterPro 20.1 6.1E+02 0.013 22.3 10.0 63 15-81 7-73 (184)
No 1
>PLN02724 Molybdenum cofactor sulfurase
Probab=100.00 E-value=2.9e-63 Score=528.46 Aligned_cols=277 Identities=23% Similarity=0.320 Sum_probs=235.2
Q ss_pred EceEEEeEEeccccccCceeeeeEEecccCcccccCCCCCCCceEEEEEcCCCeeEeecCCCceeeEEEEEcC-CCeEEE
Q psy2094 21 QVGYVTEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAHNRLVLVKVTALD-KDLIQF 99 (341)
Q Consensus 21 ~~~~V~~L~iyPVKS~~g~~v~~~~l~~~Gl~~D~~~~~l~DR~f~l~d~~~g~~lt~r~~p~L~~i~~~~~~-~~~L~l 99 (341)
..++|++|||||||||+|++|++|.|++.||++| |+|||+|. +|+|+|||++|+|++|++.++. ++.|+|
T Consensus 516 ~~~~v~~l~iYPVKS~~g~~v~~a~~~~~Gl~~D--------R~~~lvd~-~g~~~t~r~~p~l~~i~~~~~~~~~~l~l 586 (805)
T PLN02724 516 DSHRLKSITVYPIKSCAGFSVERWPLSETGLLYD--------REWMIQSL-TGEILTQKKVPEMCLITTFIDLESGKLVV 586 (805)
T ss_pred CCCEEEEEEEeccccCCCceeeEEEEeccccccc--------ceEEEEcC-CCcEEEcccCceEEEEEeEEecCCCeEEE
Confidence 4679999999999999999999999999999999 99999998 9999999999999999999963 378999
Q ss_pred EEeCCCCCc-cEEEeccCCCCC-CeeEEEEeeccCceeeeecchhHHHHHHHhhCCCCCCCeEEE-EcCCCccccccccc
Q psy2094 100 SVHNDDTYT-PFVLNMADFNRS-GSVHTIRMYEKDLVHAFDCGDAASEWFSRFLLGKEDPDIRLG-YDCDEQRKLNGTIY 176 (341)
Q Consensus 100 ~~p~~~~~~-~l~v~l~~~~~~-~~~~~~v~~~~~~~~~~d~G~~~~~wlS~~Lg~~~~~~~rL~-~~~~~~~r~~~~~~ 176 (341)
++| +|+ ++.|++++...+ ....++| |++.+.++|||+++++|||++|| .+|||+ +.+... |....-.
T Consensus 587 ~~~---~~~~~l~v~l~~~~~~~~~~~v~v--~~~~~~~~~~g~~~~~w~S~~lg----~~~~Lv~~~~~~~-r~~~~~~ 656 (805)
T PLN02724 587 RAP---RCDHKLEIPLESDSQHEESGEVIL--CGNRAESMSYGTEINEWFTNALG----RRCTLVRKSSSNT-RVCRNRN 656 (805)
T ss_pred EcC---CCCccEEEeCCCcccccccceeEE--eCCcceeEecchhHHHHHHHHhC----CceEEEEeCCccc-ccccccc
Confidence 999 776 799999876543 3567888 99999999999999999999999 789999 654432 2221100
Q ss_pred cccccccCCCCCCCCcccccCcceeEEeehhhHHHHHHHhccc---CCccccccceeecEEEecCCCCCCCCccEEEECC
Q psy2094 177 ERYRHHYGDHITNEDMGKYAYLASYMLMNEASVKDLNERLQLK---GETEVSIHNFRGNIILSTDQAYEEDNWDWVRLNE 253 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~f~D~~p~~lis~aSl~~L~~~l~~~---~~~~v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~ 253 (341)
. .. ..........+|+|.+||||+|++||++||++++.. +..+++++||||||||+|++||+||.|++|+||+
T Consensus 657 -~-~~--~~~~~~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~~~f~ED~W~~l~IG~ 732 (805)
T PLN02724 657 -P-SH--SPCGDDESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSIGD 732 (805)
T ss_pred -c-cc--ccccCcCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCCCCccccCceEEEECC
Confidence 0 00 000012235899999999999999999999999731 1237999999999999999999999999999999
Q ss_pred cEEEEEEeecCCceeeeecCCCCcCCCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeee----cCCCEEeeCCeEEE
Q psy2094 254 DIILRGMKPCTRCTMTCLDPETGQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGL----YSRGTVQKGDPVYV 329 (341)
Q Consensus 254 ~~~~~v~~pc~RC~~~~vdp~tg~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v----~~~G~I~VGD~V~v 329 (341)
+.|++++||+||+||||||+||+++.+.|||+||++||+.+ +++.||+|+.. ...|.|+|||.|.+
T Consensus 733 -~~~~~~~~C~RC~~~tvDp~tg~~~~~~epl~tL~~~R~~~---------~~~~FG~~~~~~~~~~~~~~i~vGd~v~~ 802 (805)
T PLN02724 733 -AEFTVLGGCNRCQMINIDQETGLVNPSNEPLATLASYRRVK---------GKILFGILLRYEISDKRDQWIAVGSRVNP 802 (805)
T ss_pred -EEEEEecccCCCCCCcCCcccCccCCCCChHHHHHHHhCcC---------CCCCccceeeccccCCCCcEEEeCCEEEe
Confidence 99999999999999999999999765679999999999743 68999999976 46689999999977
Q ss_pred e
Q psy2094 330 A 330 (341)
Q Consensus 330 ~ 330 (341)
.
T Consensus 803 ~ 803 (805)
T PLN02724 803 R 803 (805)
T ss_pred c
Confidence 5
No 2
>KOG2362|consensus
Probab=100.00 E-value=2.5e-61 Score=443.81 Aligned_cols=295 Identities=31% Similarity=0.494 Sum_probs=240.6
Q ss_pred CCceEEceEEEeEEeccccccCceeeeeEEecccCcccccCCCCCCCceEEEEEcCCCeeEeecCCCceeeEEEEEcCCC
Q psy2094 16 PTVWKQVGYVTEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAHNRLVLVKVTALDKD 95 (341)
Q Consensus 16 ~~~~~~~~~V~~L~iyPVKS~~g~~v~~~~l~~~Gl~~D~~~~~l~DR~f~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~ 95 (341)
...|..+++|++|+|||||||+|++|.+..++..|.... .+.||.|+++++ +|+++|+|..|.|++|+....+ +
T Consensus 36 ~~~w~~vg~v~slhiyPiKSC~~~~v~q~~ct~~g~~~e----~~~DR~~lvVn~-kg~~iTaRv~P~l~~ies~~~~-~ 109 (336)
T KOG2362|consen 36 SREWVPVGRVKSLHIYPIKSCKGIDVFQYKCTPLGPSME----FLWDRTFLVVNE-KGKFITARVKPKLVLIESEMPD-G 109 (336)
T ss_pred ceeeEEeeeeeeeEEEEeccccccchhHhhcCCCCcchh----heeeceEEEEec-cceEEEeeccceEEEeeccccc-c
Confidence 449999999999999999999999999999999995544 455599999998 9999999999999999998876 6
Q ss_pred eEEEEEeCCCCCccEEEeccCCCCCCeeEEEEeeccCceeeeecchhHHHHHHHhhCCCCCCCeEEE-EcCCCcc-cccc
Q psy2094 96 LIQFSVHNDDTYTPFVLNMADFNRSGSVHTIRMYEKDLVHAFDCGDAASEWFSRFLLGKEDPDIRLG-YDCDEQR-KLNG 173 (341)
Q Consensus 96 ~L~l~~p~~~~~~~l~v~l~~~~~~~~~~~~v~~~~~~~~~~d~G~~~~~wlS~~Lg~~~~~~~rL~-~~~~~~~-r~~~ 173 (341)
-+.+..| +.+..++.+-....++.......+|+....+++||+.++.|||++... .+-++. +...... |..+
T Consensus 110 ~~~v~~~---~~~~~s~~~~~~l~~~~~~~~t~~~~~~~dg~~cgd~~~~~~s~~~e~---~~~~~~~~~~~~~~er~~~ 183 (336)
T KOG2362|consen 110 AFLVDWP---GPEKDSVLVFRVLGNKRLKVATLFPDLSADGYDCGDWVASAFSEGIEE---PNWRLIFVGKGLYTERTNK 183 (336)
T ss_pred eeEEecC---CCcchhhhhhhhccCCccccccccccceeeccccHhhhhhhHHhhhhc---cchhhhhhcCcceeeeccc
Confidence 6677777 555444444333333222222223888899999999999999998762 233333 1111111 1111
Q ss_pred ccccccccccCCCCCCCCcccccCcceeEEeehhhHHHHHHHhcccCCccccccceeecEEEecCCCCCCCCccEEEECC
Q psy2094 174 TIYERYRHHYGDHITNEDMGKYAYLASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNWDWVRLNE 253 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~f~D~~p~~lis~aSl~~L~~~l~~~~~~~v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~ 253 (341)
+ ...++..+...+.+.++|+|.+||||+|++||++||.+|+ . ++++.||||||+|+||+||+||.|.+|+||+
T Consensus 184 ~---~~~~~~~p~~~~~d~~~f~D~~Pfli~s~aSL~dLNt~L~--~--~V~~~~FRpnI~vdgc~~~~ED~W~ei~Igd 256 (336)
T KOG2362|consen 184 P---DETWWNNPVPKRGDSTTFSDLAPFLIASQASLDDLNTRLD--K--PVPMNNFRPNIVVDGCDAFAEDKWDEIRIGD 256 (336)
T ss_pred C---CccccCCCccCccccccccccchhhhhchhhHHHHHhhhc--C--CccHhhcccceEEecCccccccccceEEEcc
Confidence 1 1111123455567789999999999999999999999999 5 9999999999999999999999999999999
Q ss_pred cEEEEEEeecCCceeeeecCCCCcCCCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeeecCCCEEeeCCeEEEeee
Q psy2094 254 DIILRGMKPCTRCTMTCLDPETGQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYVAVS 332 (341)
Q Consensus 254 ~~~~~v~~pc~RC~~~~vdp~tg~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v~~~G~I~VGD~V~v~~~ 332 (341)
++|+.++||+||++|||||+||+++ +.||++||++||..+ +++++.+++++.||+|+...+.|+|+|||.|+|..+
T Consensus 257 -~~~~~v~~CtRCiltTV~petG~~~-k~qpletLr~fR~~~-~~~~~~~~~sp~fGv~~~~~~~g~I~vGd~Vyv~~k 332 (336)
T KOG2362|consen 257 -AEFQCVAPCTRCILTTVDPETGEMS-KMQPLETLREFRLDP-GKPRKVHMGSPLFGVYAGLVNEGTIKVGDTVYVLYK 332 (336)
T ss_pred -EEEEEEeeccceeeeeecccccccc-ccCchhhHHhhhcCC-cccccccCCCcccceeecccccceEEeCCEEEEEec
Confidence 9999999999999999999999999 489999999999987 788899999999999999999999999999999875
No 3
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=100.00 E-value=2.4e-60 Score=432.52 Aligned_cols=265 Identities=26% Similarity=0.405 Sum_probs=238.0
Q ss_pred eEEEeEEeccccccCceeeeeEEecccCcccccCCCCCCCceEEEEEcCCCeeEeecCCCceeeEEEEEcCCCeEEEEEe
Q psy2094 23 GYVTEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAHNRLVLVKVTALDKDLIQFSVH 102 (341)
Q Consensus 23 ~~V~~L~iyPVKS~~g~~v~~~~l~~~Gl~~D~~~~~l~DR~f~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~~L~l~~p 102 (341)
.+|++||||||||++|+.++++.+...||.+| |+|||+|. +|.|+|+|++|.|..+++.... +.+.|+++
T Consensus 2 ~~ls~L~iyPvKSl~g~~l~~a~v~~~Gl~~D--------R~fml~d~-dG~~itar~~pa~~~~~~~~~~-~~~~l~~~ 71 (270)
T COG3217 2 ATLSQLYIYPVKSLRGERLSRALVDASGLAGD--------RRFMLVDP-DGRFITARRRPAMVRFTPAYEH-DGLRLTAP 71 (270)
T ss_pred ccchheeeeccccccchhhhhheeeccCCccc--------eEEEEEcC-CCceeccccccceeEeeeeccc-cceEEecC
Confidence 45999999999999999999999999999999 99999998 7999999999999999997766 68999999
Q ss_pred CCCCCccEEEeccCCCCCCeeEEEEeeccCceeeeecchhHHHHHHHhhCCCCCCCeEEEEcCCCccccccccccccccc
Q psy2094 103 NDDTYTPFVLNMADFNRSGSVHTIRMYEKDLVHAFDCGDAASEWFSRFLLGKEDPDIRLGYDCDEQRKLNGTIYERYRHH 182 (341)
Q Consensus 103 ~~~~~~~l~v~l~~~~~~~~~~~~v~~~~~~~~~~d~G~~~~~wlS~~Lg~~~~~~~rL~~~~~~~~r~~~~~~~~~~~~ 182 (341)
+++.+.+...+. ...++.| |++.+.+...++++++|||.||| ..+.|+..+....+....
T Consensus 72 ---~~~~~~v~~~~~---~~~~~~v--w~~~~~a~~~~~a~~d~lS~flg----~~v~L~~~~~~~~r~v~~-------- 131 (270)
T COG3217 72 ---DGEELYVRFADA---QRAPVEV--WGDHFTADAAGDAANDWLSGFLG----RAVSLRWDGAGFARRVKA-------- 131 (270)
T ss_pred ---CCccceeecccc---cccccee--eccccccccchhHHHHHHHhhhc----eeeEEEecCccccccccC--------
Confidence 888888887652 3567889 99999999999999999999999 899999444343333222
Q ss_pred cCCCCCCCCcccccCcceeEEeehhhHHHHHHHhcccCCccccccceeecEEEecCCCCCCCCccEEEECCcEEEEEEee
Q psy2094 183 YGDHITNEDMGKYAYLASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNWDWVRLNEDIILRGMKP 262 (341)
Q Consensus 183 ~~~~~~~~~~~~f~D~~p~~lis~aSl~~L~~~l~~~~~~~v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~~~~~~v~~p 262 (341)
.+.....|+|++|+|++|++||++|+++++ . .++|+|||||||++|.++|+||.|+.|+||+ +.|.+++|
T Consensus 132 -----~p~~~~~fadg~p~l~~~~aSl~dL~~r~~--~--~~~merFRpNlvv~ge~a~aEd~w~~i~IG~-v~F~~vkP 201 (270)
T COG3217 132 -----GPAVPVTFADGYPILLFNTASLADLRRRVP--A--NLEMERFRPNLVVEGEDAFAEDSWKSIRIGG-VRFDVVKP 201 (270)
T ss_pred -----CCceeeEecCCceEEEEccccHHHHhhhcc--C--CCChhhCCCceEEeecccccccCceEEEEcc-EEEEEecc
Confidence 134568999999999999999999999998 5 8999999999999999999999999999999 99999999
Q ss_pred cCCceeeeecCCCCcCCCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeeecCCCEEeeCCeEEEeeecc
Q psy2094 263 CTRCTMTCLDPETGQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYVAVSEK 334 (341)
Q Consensus 263 c~RC~~~~vdp~tg~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v~~~G~I~VGD~V~v~~~~~ 334 (341)
|.||+|||+||+||++.+..+|+.+|.++|...+ .++..||+|+.+..+|.|++||.|.+++.++
T Consensus 202 C~RCi~Ttvd~~tGe~~p~~~p~~~~~~~R~~~d-------~~~~~FG~n~~a~~~g~ir~Gd~ve~l~~~~ 266 (270)
T COG3217 202 CSRCIFTTVDPDTGERRPGGEPLFTLNRFRTNPD-------AGGVLFGQNLIARNEGRIRVGDAVEVLAVGP 266 (270)
T ss_pred chhcceeeECCcccccCCCCChhHHHHhhhcccc-------cCcccccceEEeccCcceecCcceeEEEecc
Confidence 9999999999999998889999999999998431 2578999999999999999999999998876
No 4
>PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO). The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A.
Probab=99.97 E-value=1.3e-31 Score=222.93 Aligned_cols=116 Identities=31% Similarity=0.499 Sum_probs=63.6
Q ss_pred ceEEEeEEeccccccCceeeeeEEecccCcc-cccCCCCCCCceEEEEEcCCCeeEeecCCCceeeEEEEEcC-CCeEEE
Q psy2094 22 VGYVTEINIYPLKSGYYLSVEKAFCDFKGLS-RIGQGYPLSDRCFLLFNRSKGTYISNIAHNRLVLVKVTALD-KDLIQF 99 (341)
Q Consensus 22 ~~~V~~L~iyPVKS~~g~~v~~~~l~~~Gl~-~D~~~~~l~DR~f~l~d~~~g~~lt~r~~p~L~~i~~~~~~-~~~L~l 99 (341)
+++|++|||||||||+|++++++.|++.|+. +| |+|||+|. +|+|+|+|++|+|++|++.++. ++.|+|
T Consensus 1 m~~v~~L~iyPIKS~~g~~~~~~~~~~~Gl~~~D--------R~~~l~d~-~g~~it~r~~P~l~~i~~~~~~~~~~l~l 71 (120)
T PF03476_consen 1 MGRVSSLYIYPIKSCRGIEVDEAEVTPSGLKAGD--------RRFMLVDE-DGRFITQRQYPRLALIRPEIDEDDGTLTL 71 (120)
T ss_dssp -------------------------------GT----------SEEEEET-TS-EE-TTT-GGGG--EEEE---SSEEEE
T ss_pred CccccccccccccccccccccccccccccCCccc--------hhheeECC-CCCEEeeccCcceeeEEEEeecceeEEEE
Confidence 4789999999999999999999999999996 99 99999995 9999999999999999999973 389999
Q ss_pred EEeCCCCCccEEEeccCCCCCCeeEEEEeeccCceeeeecchhHHHHHHHhhC
Q psy2094 100 SVHNDDTYTPFVLNMADFNRSGSVHTIRMYEKDLVHAFDCGDAASEWFSRFLL 152 (341)
Q Consensus 100 ~~p~~~~~~~l~v~l~~~~~~~~~~~~v~~~~~~~~~~d~G~~~~~wlS~~Lg 152 (341)
++| +++.+.++++ ........+.+ |++.+.++|||+++++|||++||
T Consensus 72 ~~~---~~~~l~i~~~-~~~~~~~~v~v--~~~~~~~~~~gd~~~~WfS~~Lg 118 (120)
T PF03476_consen 72 SAP---GMPPLEIPLP-DSTGPRTEVQV--WGDTVEAYDCGDEASEWFSEFLG 118 (120)
T ss_dssp E-S---SS-EEEEESS-SS-S-EEEEEE--TTEEEEEEE--HHHHHHHHHHT-
T ss_pred ECC---CCceEEEEcc-cccCCEeeEEE--ECCEeEEEECCHHHHHHHHHHHC
Confidence 999 9999999988 22235778888 99999999999999999999999
No 5
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.95 E-value=1.2e-28 Score=208.11 Aligned_cols=121 Identities=29% Similarity=0.546 Sum_probs=91.3
Q ss_pred CcccccCcceeEEeehhhHHHHHHHhcccCCccccccceeecEEEecCCCCCCCCc--cEEEECCcEEEEEEeecCCcee
Q psy2094 191 DMGKYAYLASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNW--DWVRLNEDIILRGMKPCTRCTM 268 (341)
Q Consensus 191 ~~~~f~D~~p~~lis~aSl~~L~~~l~~~~~~~v~~~RFRpNIvI~g~~pf~Ed~W--~~l~IG~~~~~~v~~pc~RC~~ 268 (341)
....|+|.+|++|+|++|+++|+++++.+ .++++||||||+|+|.+||+||.| +.|+||+ +.|+++.+|.||.+
T Consensus 11 ~~~~~~d~~~v~l~s~~s~~~l~~~~~~~---~~~~~rFR~Nivv~g~~~f~Ed~w~~~~l~iG~-~~l~v~~~~~rC~~ 86 (133)
T PF03473_consen 11 YKHHFGDERPVSLISQESLDALNARLGEP---GLDPRRFRPNIVVDGLPPFDEDDWCGDRLRIGD-AVLEVTQPCPRCVM 86 (133)
T ss_dssp -----GCGGSEEEEECHHHHHHHHHCCCC---GGSCCCCT-SEEECS-T---TCCGBTEEEECTT-EEEEEEEE----CH
T ss_pred CcccCCCCCceeeccHHHHHHHHhhhccc---cCCHhHCCCCEEEeccccccccccceeeeccCC-EEEEEEeCcCCCCc
Confidence 35889999999999999999999999831 349999999999999999999999 9999999 99999999999999
Q ss_pred eeecCCCCcCCCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeeecCCCEEeeCCeEEE
Q psy2094 269 TCLDPETGQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYV 329 (341)
Q Consensus 269 ~~vdp~tg~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v~~~G~I~VGD~V~v 329 (341)
+++||+||++++ +-...+..+- ....+|+|+.+.++|.|+|||+|+|
T Consensus 87 ~~~~~~tg~~~~--~~~~~~~~~~------------~~~~~G~~~~V~~~G~I~vGD~V~V 133 (133)
T PF03473_consen 87 PNVDPDTGERDP--EGKPLFGQNA------------SPGRRGVYARVIKGGTIRVGDEVEV 133 (133)
T ss_dssp HHHHHCHCTCTS--TTHHHHHHHH------------CCTSS-EEEEEEE-EEEETTSEEEE
T ss_pred cceeeccCcccc--hhhhhhhhhe------------ecCCceEEEEeccCCEEccCCeEEC
Confidence 999999999986 4332333321 2346899999999999999999986
No 6
>KOG2142|consensus
Probab=99.17 E-value=2.6e-12 Score=129.82 Aligned_cols=204 Identities=14% Similarity=0.103 Sum_probs=131.5
Q ss_pred eEEEeEEeccccccCceeeeeEEecccCcccccCCCCCCCceEEEEEcCCCeeEeecCCCceeeEEEEEcCCCeEEEEEe
Q psy2094 23 GYVTEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAHNRLVLVKVTALDKDLIQFSVH 102 (341)
Q Consensus 23 ~~V~~L~iyPVKS~~g~~v~~~~l~~~Gl~~D~~~~~l~DR~f~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~~L~l~~p 102 (341)
..+.++++|||| |+.++++++.+...|+.+| |.||++|- +|..|++.+.++|.+|++.++. +...
T Consensus 464 ~~d~~~~s~~~~-~~~~EI~~~~~~~~gl~~~--------~s~m~~~~-~~~alr~etE~e~~Li~~~~~~-----~~d~ 528 (728)
T KOG2142|consen 464 HFDAAVASYPIK-CAAFEIEEENSGSQGLKYD--------RSWMSVDM-NGSALRQETESELCLIGPRIKV-----QEDE 528 (728)
T ss_pred hhhhhhhhhhhh-hceeEeeccCccccccccc--------cccccccc-cccceeeecccceeeeccccch-----hhhc
Confidence 467789999999 9999999999999999999 99999998 9999999999999999998874 1111
Q ss_pred CCCCCccEEEeccCCCCC---CeeEEEEeeccCceeeeecchhHHHHHHHhhCCCCCCCeEEE-EcCCCccccccccccc
Q psy2094 103 NDDTYTPFVLNMADFNRS---GSVHTIRMYEKDLVHAFDCGDAASEWFSRFLLGKEDPDIRLG-YDCDEQRKLNGTIYER 178 (341)
Q Consensus 103 ~~~~~~~l~v~l~~~~~~---~~~~~~v~~~~~~~~~~d~G~~~~~wlS~~Lg~~~~~~~rL~-~~~~~~~r~~~~~~~~ 178 (341)
+++ .+++++..-+. ..+.+.. | .+++++|+++....|++.-.|+ ..++++ .+- +.....
T Consensus 529 ---~~~-~~vs~~~sl~~~~a~~~s~~d--~-~~c~~iDh~~~lgln~t~~r~r---~ll~wl~~sl---~~~~~~---- 591 (728)
T KOG2142|consen 529 ---QSE-RRVSFPTSLEQGEASKCSSYD--C-PPCRGIDHVDSLGLNLTTNRGR---ELLNWLVQSL---RNLQHS---- 591 (728)
T ss_pred ---ccc-eeecchhhhhhhhhhhccccc--C-ccccccchhhhhhHHhhhhhhh---hHHHHHHHhc---cccccc----
Confidence 233 44444321111 1222222 4 4589999999999999987772 122222 110 000000
Q ss_pred cccccCCCCCCCCcccccCcceeEEeehhhHHHHHHHhcccCCccccccceeecEEEecCCCCCCCCccEEEECCcEEEE
Q psy2094 179 YRHHYGDHITNEDMGKYAYLASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNWDWVRLNEDIILR 258 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~f~D~~p~~lis~aSl~~L~~~l~~~~~~~v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~~~~~~ 258 (341)
. ......+...+...+....+-...... - .--..|||.||||++...|+|-.|..+-||. +.|.
T Consensus 592 -------~----~~~~~~nlvq~ygpk~~~erG~~~~fn--l--~d~~~~fr~p~IV~~lae~E~isl~~~~l~~-iri~ 655 (728)
T KOG2142|consen 592 -------E----SSSTTVNLVQIYGPKTKYERGPAVAFN--L--FDLSKRFRAPIIVNKLAEREEISLGELSLGH-IRIQ 655 (728)
T ss_pred -------c----cccccccceeeecCccccccChhheee--h--hhhhccccchhhhcchhhhhcccccceeeee-eEEe
Confidence 0 000001111111111111110000000 0 1135689999999999999999999999999 7666
Q ss_pred EEeecCCceeeeecCCCCcCCC
Q psy2094 259 GMKPCTRCTMTCLDPETGQKNL 280 (341)
Q Consensus 259 v~~pc~RC~~~~vdp~tg~~~~ 280 (341)
+ ||.| ++||.+|++..
T Consensus 656 d--p~~r----~~dq~~~~r~~ 671 (728)
T KOG2142|consen 656 D--PCHR----DIDQLLGQRRG 671 (728)
T ss_pred c--Ccch----hhhHHhhhhcc
Confidence 6 9999 78999998864
No 7
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=98.68 E-value=6.6e-08 Score=92.54 Aligned_cols=105 Identities=14% Similarity=0.200 Sum_probs=76.3
Q ss_pred ceeEEeehhhHHHHHHHhcccCCccccccceeecEEEecCCCCCCCCccEEEECCcEEEEEEeecCCceeeeecCCCCcC
Q psy2094 199 ASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNWDWVRLNEDIILRGMKPCTRCTMTCLDPETGQK 278 (341)
Q Consensus 199 ~p~~lis~aSl~~L~~~l~~~~~~~v~~~RFRpNIvI~g~~pf~Ed~W~~l~IG~~~~~~v~~pc~RC~~~~vdp~tg~~ 278 (341)
..+++++.++++.+++ ++ . ..+.+-.||.||+++|.....-.-=+.|+||++++|+++.||..|.-..........
T Consensus 203 RqVsl~~~E~~~~~~~-~g--~-~~l~pG~fGENLtv~Gidl~~l~iGdrlrIG~~avLeVt~pr~PC~~~~~~l~~~~~ 278 (308)
T PRK14499 203 RQVSLLDISSIKKMEE-YG--L-KGLCFGKFAENITTENLDLQKISLGTKLKIGDNVVLEISQIGKKCHGSGCEIARQVG 278 (308)
T ss_pred ceEEEcCHHHHHHHHh-cC--C-cCCCcccccceEEEcCcCHHHCCCCCEEEECCcEEEEEEeCCCCCcCcccchhHhcC
Confidence 5899999999999873 43 2 138999999999999973322222389999977999999999999743211111111
Q ss_pred CCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeeecCCCEEeeCCeEEEee
Q psy2094 279 NLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYVAV 331 (341)
Q Consensus 279 ~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v~~~G~I~VGD~V~v~~ 331 (341)
+ . ..+.-|+||.|.++|.|++||+|.+.+
T Consensus 279 ~--------------~----------~~~r~G~y~RVl~~G~Ir~GD~V~l~~ 307 (308)
T PRK14499 279 V--------------C----------IMPKEGLFAKVLKGGKIKPGDIIEILN 307 (308)
T ss_pred c--------------c----------CcccceEEEEEecCeEEcCCCEEEEcc
Confidence 0 0 112259999999999999999999865
No 8
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=98.19 E-value=1.1e-05 Score=73.92 Aligned_cols=109 Identities=13% Similarity=0.151 Sum_probs=83.2
Q ss_pred ceeEEeehhhHHHHHHHhcccCCccccccceeecEEEecCCCCCCCCc---cEEEECCcEEEEEEeecCCceeeeecCCC
Q psy2094 199 ASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNW---DWVRLNEDIILRGMKPCTRCTMTCLDPET 275 (341)
Q Consensus 199 ~p~~lis~aSl~~L~~~l~~~~~~~v~~~RFRpNIvI~g~~pf~Ed~W---~~l~IG~~~~~~v~~pc~RC~~~~vdp~t 275 (341)
-.+++.+.++.+.+++.++.. ...+..--|==||.++| +.|++- ..++||+ ++|+|+.|+..|- +++...
T Consensus 55 kAV~~y~~e~y~~w~~~~~~~-~~~l~~G~fGENLtv~G---l~e~~v~IGD~~riG~-avleVsqpR~PC~--kl~~r~ 127 (223)
T PRK11536 55 RALCHYPREHYLYWAREFPEQ-AELFVAPAFGENLSTDG---LTESNVFIGDIFRWGE-ALIQVTQPRSPCY--KLNYHF 127 (223)
T ss_pred ceEEEcCHhHHHHHHHHcccc-ccccCCCCccCCEEecC---cChhhCCccCEEEECC-EEEEEecCCCCCC--chhhhc
Confidence 579999999999999888521 11455667999999998 466665 8999999 9999999999994 344444
Q ss_pred CcCCCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeeecCCCEEeeCCeEEEeeec
Q psy2094 276 GQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYVAVSE 333 (341)
Q Consensus 276 g~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v~~~G~I~VGD~V~v~~~~ 333 (341)
+.. +..+.+.+. ..-|+|+.|.++|.|++||+|.++++.
T Consensus 128 ~~~----~~~~~~~~~---------------g~~G~Y~RVL~~G~V~~GD~v~l~~r~ 166 (223)
T PRK11536 128 DIS----DIAQLMQNS---------------GKCGWLYRVIAPGKVSADAPLELVSRV 166 (223)
T ss_pred cch----hHHHHHHhh---------------CCcEEEEEEECCcEEcCCCEEEEEeCC
Confidence 433 333344332 234999999999999999999999886
No 9
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=2.3e-05 Score=70.85 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=82.8
Q ss_pred ceeEEeehhhHHHHHHHhcccCCccccccceeecEEEecCCCCCCCCc---cEEEECCcEEEEEEeecCCceeeeecCCC
Q psy2094 199 ASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNW---DWVRLNEDIILRGMKPCTRCTMTCLDPET 275 (341)
Q Consensus 199 ~p~~lis~aSl~~L~~~l~~~~~~~v~~~RFRpNIvI~g~~pf~Ed~W---~~l~IG~~~~~~v~~pc~RC~~~~vdp~t 275 (341)
-.+.+.+...++.+...++ . .+.+-=|+=||.++|. .|..- ..++||+ +.|+|+.|+.-|.-.+.-.
T Consensus 55 kAv~~y~~ehy~~w~~~lg--~--~l~pg~fGENltt~Gl---~e~~l~iGdr~riG~-allEVSqpR~PC~~l~~~~-- 124 (210)
T COG2258 55 KAVCHYPREHYAAWETLLG--R--GLQPGAFGENLTTSGL---DEANLCIGDRFRIGE-ALLEVTQPRKPCSKLNKRF-- 124 (210)
T ss_pred ceEEEccHHHHHHHHHHhC--C--CCCcccccCceeecCc---chhhccccCEEEecc-EEEEecCCCCchHHHHHhc--
Confidence 3688999999999999998 4 5777789999999995 45555 7999999 9999999999997665432
Q ss_pred CcCCCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeeecCCCEEeeCCeEEEeeecc
Q psy2094 276 GQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYVAVSEK 334 (341)
Q Consensus 276 g~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v~~~G~I~VGD~V~v~~~~~ 334 (341)
+.. +..+.+++ ...-|+|+.|.++|.|++||++.+.++..
T Consensus 125 ~~~----~~~~~~~~---------------~G~~G~y~RVL~~G~v~~gD~l~l~~r~~ 164 (210)
T COG2258 125 GIP----DLAKRFQQ---------------TGRTGWYARVLEEGKVRAGDPLKLIPRPS 164 (210)
T ss_pred CCc----cHHHHhhc---------------cCcccEEEEEcccceecCCCceEEecCCC
Confidence 211 22222222 22459999999999999999999987764
No 10
>KOG2362|consensus
Probab=56.05 E-value=11 Score=36.15 Aligned_cols=125 Identities=7% Similarity=-0.087 Sum_probs=78.8
Q ss_pred EceEEEeEEeccccccCceeeeeEEecccCcccccCCCCCCCceEEEEEcCCCeeEeecCCCceeeEEEEEcCCCe----
Q psy2094 21 QVGYVTEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAHNRLVLVKVTALDKDL---- 96 (341)
Q Consensus 21 ~~~~V~~L~iyPVKS~~g~~v~~~~l~~~Gl~~D~~~~~l~DR~f~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~~---- 96 (341)
++++..+|+ ++|-+.-..++++...+.-.- ..-+-|++... .+..+++.+.+....+.-...+ |.
T Consensus 54 KSC~~~~v~----q~~ct~~g~~~e~~~DR~~lv-----Vn~kg~~iTaR-v~P~l~~ies~~~~~~~~v~~~-~~~~~s 122 (336)
T KOG2362|consen 54 KSCKGIDVF----QYKCTPLGPSMEFLWDRTFLV-----VNEKGKFITAR-VKPKLVLIESEMPDGAFLVDWP-GPEKDS 122 (336)
T ss_pred ccccccchh----HhhcCCCCcchhheeeceEEE-----EeccceEEEee-ccceEEEeecccccceeEEecC-CCcchh
Confidence 456666777 666666666666555443211 11177888876 8899999999988777665554 33
Q ss_pred -EEEEEeCCCCCccEEEeccCCCCCCeeEEEEeeccCceeeeecchhHHHHHHHhhCCCCCCCeEEE-EcCC
Q psy2094 97 -IQFSVHNDDTYTPFVLNMADFNRSGSVHTIRMYEKDLVHAFDCGDAASEWFSRFLLGKEDPDIRLG-YDCD 166 (341)
Q Consensus 97 -L~l~~p~~~~~~~l~v~l~~~~~~~~~~~~v~~~~~~~~~~d~G~~~~~wlS~~Lg~~~~~~~rL~-~~~~ 166 (341)
+.+.++ +++.+.+.+.-... ...-..+ |.....+.+.+.+..+|+..+.+ .++++. ....
T Consensus 123 ~~~~~~l---~~~~~~~~t~~~~~-~~dg~~c--gd~~~~~~s~~~e~~~~~~~~~~----~~~~~er~~~~ 184 (336)
T KOG2362|consen 123 VLVFRVL---GNKRLKVATLFPDL-SADGYDC--GDWVASAFSEGIEEPNWRLIFVG----KGLYTERTNKP 184 (336)
T ss_pred hhhhhhc---cCCccccccccccc-eeecccc--HhhhhhhHHhhhhccchhhhhhc----CcceeeecccC
Confidence 344455 55555554433221 1111222 55566688889999999999999 889988 4433
No 11
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=34.51 E-value=37 Score=25.48 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=18.9
Q ss_pred cCCCEEeeCCeEEEeeecccccc
Q psy2094 316 YSRGTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 316 ~~~G~I~VGD~V~v~~~~~~~~~ 338 (341)
......++||.|.+.+..++|..
T Consensus 44 D~~~~~k~GD~V~I~ecrPlSK~ 66 (71)
T TIGR03635 44 DENNECKVGDVVRIIETRPLSKT 66 (71)
T ss_pred CCCCCCCCCCEEEEEEcCCcCCc
Confidence 34457999999999999998864
No 12
>KOG3347|consensus
Probab=33.13 E-value=22 Score=31.13 Aligned_cols=28 Identities=14% Similarity=0.378 Sum_probs=19.6
Q ss_pred ccceeecEEEecCCC-----C-----CCCCccEEEECC
Q psy2094 226 IHNFRGNIILSTDQA-----Y-----EEDNWDWVRLNE 253 (341)
Q Consensus 226 ~~RFRpNIvI~g~~p-----f-----~Ed~W~~l~IG~ 253 (341)
++|-||||+|.|.|. + +.-..+.|-||+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISD 40 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence 458999999998632 1 223457888886
No 13
>CHL00142 rps17 ribosomal protein S17; Validated
Probab=31.24 E-value=43 Score=26.03 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.2
Q ss_pred ecCCCEEeeCCeEEEeeecccccc
Q psy2094 315 LYSRGTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 315 v~~~G~I~VGD~V~v~~~~~~~~~ 338 (341)
.......++||.|.+.+..++|.-
T Consensus 45 HDe~n~~~~GD~V~I~e~RPlSKt 68 (84)
T CHL00142 45 HDEENECNIGDQVLIEETRPLSKT 68 (84)
T ss_pred eCCCCCCCCCCEEEEEEcCCCCCc
Confidence 344557999999999999988763
No 14
>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed
Probab=30.59 E-value=46 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=18.8
Q ss_pred cCCCEEeeCCeEEEeeecccccc
Q psy2094 316 YSRGTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 316 ~~~G~I~VGD~V~v~~~~~~~~~ 338 (341)
......++||.|.+.+..++|..
T Consensus 49 D~~n~~k~GD~V~I~e~rPlSK~ 71 (84)
T PRK05610 49 DENNEAKIGDVVRIMETRPLSKT 71 (84)
T ss_pred CCCCCCCCCCEEEEEEcccCCCC
Confidence 34457999999999999998864
No 15
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=29.21 E-value=33 Score=34.01 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=25.0
Q ss_pred CeeeeeeeecCCCEEeeCCeEEEeeecccc
Q psy2094 307 PRLGLYCGLYSRGTVQKGDPVYVAVSEKLN 336 (341)
Q Consensus 307 ~~fGv~~~v~~~G~I~VGD~V~v~~~~~~~ 336 (341)
-.|=-|+.-...|.|+|||+|.++.+++.+
T Consensus 236 ~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s 265 (431)
T COG2895 236 LDFRGYAGTIASGSVKVGDEVVVLPSGKTS 265 (431)
T ss_pred CcccccceeeeccceecCCeEEEccCCCee
Confidence 346777888889999999999999888764
No 16
>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=28.87 E-value=49 Score=25.92 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=17.1
Q ss_pred CEEeeCCeEEEeeeccccc
Q psy2094 319 GTVQKGDPVYVAVSEKLNA 337 (341)
Q Consensus 319 G~I~VGD~V~v~~~~~~~~ 337 (341)
-.+++||.|.+.+..++|+
T Consensus 54 ~~~k~GD~V~I~EtRPLSK 72 (87)
T COG0186 54 NEAKVGDIVRIAETRPLSK 72 (87)
T ss_pred ccCCCCCEEEEEEccccCC
Confidence 4689999999999999986
No 17
>KOG0462|consensus
Probab=26.99 E-value=68 Score=33.66 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=35.3
Q ss_pred eecCCCCcCCCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeeec-CCCEEeeCCeEEEeeeccc
Q psy2094 270 CLDPETGQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLY-SRGTVQKGDPVYVAVSEKL 335 (341)
Q Consensus 270 ~vdp~tg~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v~-~~G~I~VGD~V~v~~~~~~ 335 (341)
.|-|-++.+| .||+.|.--= . ...+-|+-+.+. ..|.|++||.|....++|.
T Consensus 233 rVPpP~~~~d---~plr~Lifds---------~--yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~ 285 (650)
T KOG0462|consen 233 RVPPPKGIRD---APLRMLIFDS---------E--YDEYRGVIALVRVVDGVVRKGDKVQSAATGKS 285 (650)
T ss_pred hCCCCCCCCC---cchHHHhhhh---------h--hhhhcceEEEEEEeeeeeecCCEEEEeecCcc
Confidence 3456788887 7999885410 0 123446555443 6899999999999887764
No 18
>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed
Probab=23.65 E-value=72 Score=26.05 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=19.7
Q ss_pred eecCC-CEEeeCCeEEEeeecccccc
Q psy2094 314 GLYSR-GTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 314 ~v~~~-G~I~VGD~V~v~~~~~~~~~ 338 (341)
+...+ ...++||.|.+.+..++|..
T Consensus 70 aHDe~cn~~kvGD~V~I~E~RPiSKt 95 (108)
T PRK08572 70 AHNPPCIDAKVGDKVKIAECRPLSKT 95 (108)
T ss_pred EECCCCCCCCCCCEEEEEEcCCCCCc
Confidence 33344 46999999999999999864
No 19
>TIGR03630 arch_S17P archaeal ribosomal protein S17P. This model describes exclusively the archaeal ribosomal protein S17P. It excludes homologous ribosomal proteins S11 from eukaryotes and S17 from bacteria.
Probab=22.40 E-value=77 Score=25.60 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.8
Q ss_pred cCC-CEEeeCCeEEEeeecccccc
Q psy2094 316 YSR-GTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 316 ~~~-G~I~VGD~V~v~~~~~~~~~ 338 (341)
..+ ...++||.|.+.+..++|..
T Consensus 70 De~cn~~kvGD~V~I~E~RPlSKt 93 (102)
T TIGR03630 70 NPPCIDVKEGDIVIIGETRPLSKT 93 (102)
T ss_pred CCCCCCCCCCCEEEEEEcCCCCCc
Confidence 344 56899999999999998863
No 20
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=21.29 E-value=71 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=19.7
Q ss_pred eeeeeecCCCEEeeCCeEEEeeecccc
Q psy2094 310 GLYCGLYSRGTVQKGDPVYVAVSEKLN 336 (341)
Q Consensus 310 Gv~~~v~~~G~I~VGD~V~v~~~~~~~ 336 (341)
|-+..+...+...|||+|.+.+....+
T Consensus 15 GeF~~ik~~~~~~vG~eI~~~~~~~~~ 41 (56)
T PF12791_consen 15 GEFIKIKRKPGMEVGQEIEFDEKDIIN 41 (56)
T ss_pred CcEEEEeCCCCCcccCEEEEechhhcc
Confidence 566666666669999999988765433
No 21
>PF00366 Ribosomal_S17: Ribosomal protein S17; InterPro: IPR000266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal proteins catalyse ribosome assembly and stabilise the rRNA, tuning the structure of the ribosome for optimal function. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S17 is known to bind specifically to the 5' end of 16S ribosomal RNA in Escherichia coli (primary rRNA binding protein), and is thought to be involved in the recognition of termination codons. Experimental evidence [] has revealed that S17 has virtually no groups exposed on the ribosomal surface.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_Q 2VHP_Q 3BBN_Q 2QAL_Q 3OAR_Q 1VS5_Q 3KC4_Q 2AW7_Q 3E1C_J 2AVY_Q ....
Probab=20.80 E-value=63 Score=24.00 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=19.1
Q ss_pred eeeecCCCEEeeCCeEEEeeecccccc
Q psy2094 312 YCGLYSRGTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 312 ~~~v~~~G~I~VGD~V~v~~~~~~~~~ 338 (341)
|.+......-++||.|.+.+..++|+.
T Consensus 35 ~~aHD~~~~~~vGD~V~I~e~rPiSk~ 61 (69)
T PF00366_consen 35 YMAHDENNICKVGDKVRIRECRPISKT 61 (69)
T ss_dssp EEEE-TTSSSTTTSEEEEEEEEEEETT
T ss_pred EEEeCCccCCCCCCEEEEEeeeccCCc
Confidence 344444555678999999998888764
No 22
>CHL00112 rpl28 ribosomal protein L28; Provisional
Probab=20.58 E-value=81 Score=23.14 Aligned_cols=11 Identities=9% Similarity=-0.103 Sum_probs=9.2
Q ss_pred ccccceeecEE
Q psy2094 224 VSIHNFRGNII 234 (341)
Q Consensus 224 v~~~RFRpNIv 234 (341)
-.-++|+|||-
T Consensus 24 kTkR~f~pNLq 34 (63)
T CHL00112 24 RTKKLQKVNLQ 34 (63)
T ss_pred ccCceeccccc
Confidence 47899999995
No 23
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=20.10 E-value=6.1e+02 Score=22.35 Aligned_cols=63 Identities=25% Similarity=0.391 Sum_probs=40.1
Q ss_pred CCCceEE-ceEEEeEEeccccc---cCceeeeeEEecccCcccccCCCCCCCceEEEEEcCCCeeEeecCC
Q psy2094 15 IPTVWKQ-VGYVTEINIYPLKS---GYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAH 81 (341)
Q Consensus 15 ~~~~~~~-~~~V~~L~iyPVKS---~~g~~v~~~~l~~~Gl~~D~~~~~l~DR~f~l~d~~~g~~lt~r~~ 81 (341)
.+..|+. -|+=.+|++||-.+ -=..+++.|.+...|.-. .|.=.||..++++. +|-.++....
T Consensus 7 ~~~pWkNggG~T~Ei~~~P~~~~~~~F~wRiS~A~V~~~g~FS---~FpG~~R~l~~L~G-~gl~L~~~~~ 73 (184)
T PF05962_consen 7 PTMPWKNGGGTTREIAIYPEGSAKRDFDWRISIATVEADGPFS---DFPGYDRILTLLEG-NGLRLTHDGQ 73 (184)
T ss_dssp EEEE-TTSSEEEEEEEE-SSSCCCCC-SEEEEEEEE-SSEEE------TT-EEEEEEEES-S-EEEEETTC
T ss_pred CcccccCCCeEEEEEEEcCCCCccCCceEEEEEEEEcCCCCCC---CCCCCcEEEEEEeC-CcEEEecCCC
Confidence 3556764 47889999999876 223568889998888632 24445699999997 7777777655
Done!