Query psy2094
Match_columns 341
No_of_seqs 140 out of 1187
Neff 7.1
Searched_HMMs 29240
Date Sat Aug 17 00:06:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2exn_A Hypothetical protein BO 100.0 7.7E-31 2.6E-35 221.7 9.5 118 25-167 1-121 (136)
2 1oru_A YUAD protein; structura 99.7 2.2E-16 7.6E-21 140.8 9.2 119 197-334 65-186 (195)
3 1o65_A Hypothetical protein YI 99.3 1.2E-11 4E-16 113.7 9.8 109 199-332 67-177 (246)
4 1oru_A YUAD protein; structura 92.3 0.098 3.3E-06 45.8 3.8 34 21-54 8-41 (195)
5 1qd7_I S17 ribosomal protein; 29.7 29 0.001 26.2 2.3 24 315-338 44-67 (89)
6 2vqe_Q 30S ribosomal protein S 21.1 51 0.0017 25.6 2.3 25 314-338 44-68 (105)
7 3bbn_Q Ribosomal protein S17; 20.7 44 0.0015 27.4 2.0 27 312-338 99-125 (142)
8 3r8n_Q 30S ribosomal protein S 20.3 36 0.0012 25.1 1.2 21 318-338 47-67 (80)
9 3nqz_A MCP-02, secreted metall 19.7 2.1E+02 0.0071 23.8 6.2 45 26-78 130-174 (180)
10 3esg_A HUTD, putative uncharac 19.2 3.3E+02 0.011 23.2 7.3 62 15-80 20-84 (193)
No 1
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=99.97 E-value=7.7e-31 Score=221.71 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=106.8
Q ss_pred EEeEEeccccccCceeeeeEEecccCcccccCCCCCCCceEEEEEcCCCeeEeecCCCceeeEEEEEcCCCeEEEEEeCC
Q psy2094 25 VTEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAHNRLVLVKVTALDKDLIQFSVHND 104 (341)
Q Consensus 25 V~~L~iyPVKS~~g~~v~~~~l~~~Gl~~D~~~~~l~DR~f~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~~L~l~~p~~ 104 (341)
|++|||||||||+|++|+++. .+| |+|||+|. +|+|+|||++|+|++|++.+++ +.|+|++|
T Consensus 1 v~~L~iYPIKSc~g~~l~~a~------~~D--------R~wmlvd~-~G~~lt~r~~P~Lali~~~~~~-~~L~l~~p-- 62 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQSEAA------AYQ--------KRWLVAND-AGQWLNRDLCPRLAEVSVELRM-GYLVLKAP-- 62 (136)
T ss_dssp CCCCCEEEETTTEEECCGGGG------GTC--------CSEEEEET-TSCEECTTTCGGGGCCEEEECS-SEEEEECS--
T ss_pred CceEEEeccccCCceecCccC------ccC--------CcEEEEeC-CCCEEEccCCccccEEEEEecC-CEEEEEeC--
Confidence 578999999999999999875 778 99999998 9999999999999999999998 79999999
Q ss_pred CCCccEEEeccCCCC--CCeeEEEEeeccCceeeeecchhHHHHHHHhhCCCCCCCeEEE-EcCCC
Q psy2094 105 DTYTPFVLNMADFNR--SGSVHTIRMYEKDLVHAFDCGDAASEWFSRFLLGKEDPDIRLG-YDCDE 167 (341)
Q Consensus 105 ~~~~~l~v~l~~~~~--~~~~~~~v~~~~~~~~~~d~G~~~~~wlS~~Lg~~~~~~~rL~-~~~~~ 167 (341)
+++++.+++++... ...+.++| |++.+.++|||+++++|||+||| .+|||+ +.++.
T Consensus 63 -g~~~l~vpl~~~~~~~~~~~~v~v--w~~~~~a~d~g~~~~~W~S~~Lg----~p~rLv~~~~~~ 121 (136)
T 2exn_A 63 -GMLRLDIPLDVIEDDDSVRYQMLV--GEQTVDVVDEGELAAAWISNHAG----VPCRILKVHPDM 121 (136)
T ss_dssp -SSCEEEEESSCCCSSCSCEEEEEE--TTEEEEEEECCHHHHHHHHHHTC----SSEEEEEECTTT
T ss_pred -CCceEEEECCCccccccCceeEEE--eCCcceeEeccHHHHHHHHHHhC----CCeEEEEcCCCC
Confidence 99999999987641 14668899 99999999999999999999999 899999 65543
No 2
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.65 E-value=2.2e-16 Score=140.77 Aligned_cols=119 Identities=9% Similarity=0.072 Sum_probs=94.4
Q ss_pred CcceeEEeehhhHHHHHHHhcccCCccccccceeecEEEecC-CCCCCCCccEEEECCcEEEEEEeecCCceee--eecC
Q psy2094 197 YLASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTD-QAYEEDNWDWVRLNEDIILRGMKPCTRCTMT--CLDP 273 (341)
Q Consensus 197 D~~p~~lis~aSl~~L~~~l~~~~~~~v~~~RFRpNIvI~g~-~pf~Ed~W~~l~IG~~~~~~v~~pc~RC~~~--~vdp 273 (341)
+..+++|++.+|++++++.++ . .++++.+||+||+|+|. ..++++-|+.|+||+.+.|+++.+|.||..+ ++++
T Consensus 65 ~~r~V~l~~~e~~~~~~~~~g--~-~~l~~g~fgeNl~v~Gi~~~~~l~iG~~l~iG~~a~leVt~~~~pC~~~~~~i~~ 141 (195)
T 1oru_A 65 NRRQISIVSIEECNEIALKMG--V-PRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPGEVIQS 141 (195)
T ss_dssp CCCCEEEEEHHHHHHHHHHHT--C-SCCCGGGGTCSEEEESCTTGGGCCTTCEEECTTSCEEEEEEECCCCHHHHHHHHH
T ss_pred CCceEEECCHHHHHHHHHHcC--C-CCCCcccccCCEEEeCCCChhhCCCCCEEEECCCEEEEEeeccCCCCCCccccch
Confidence 346899999999999999987 3 14999999999999998 6666677899999944999999999999984 5665
Q ss_pred CCCcCCCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeeecCCCEEeeCCeEEEeeecc
Q psy2094 274 ETGQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYVAVSEK 334 (341)
Q Consensus 274 ~tg~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v~~~G~I~VGD~V~v~~~~~ 334 (341)
.++.. ....+.+.... ...+|+|+.|.++|.|++||+|.+.....
T Consensus 142 ~~~~~---~g~~~~~~~~~-------------~~r~G~~~rVl~~G~I~~GD~v~l~~~~~ 186 (195)
T 1oru_A 142 YYPDQ---PKLASAFVRHA-------------LGIRGIVCIVERPGAVYTGDEIEVHSYQR 186 (195)
T ss_dssp HSTTS---TTHHHHHHHHS-------------TTSSCEEEEEEECEEEETTCEEEEEEEC-
T ss_pred hcccc---cchHHHHHhhc-------------cCCccEEEEEecCceEcCCCEEEEEeCCC
Confidence 44321 14555555531 24589999999999999999999987643
No 3
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=99.27 E-value=1.2e-11 Score=113.67 Aligned_cols=109 Identities=11% Similarity=0.150 Sum_probs=88.4
Q ss_pred ceeEEeehhhHHHHHHHhcccCCccccccceeecEEEecCCCCCCCCc--cEEEECCcEEEEEEeecCCceeeeecCCCC
Q psy2094 199 ASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNW--DWVRLNEDIILRGMKPCTRCTMTCLDPETG 276 (341)
Q Consensus 199 ~p~~lis~aSl~~L~~~l~~~~~~~v~~~RFRpNIvI~g~~pf~Ed~W--~~l~IG~~~~~~v~~pc~RC~~~~vdp~tg 276 (341)
..+++++.+|++.+++.++.. ...+++-+||-||+++|.. +++.| +.++||+ ++|+|+.||.+|...+.. +|
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~-~~~l~pg~fgENLtv~Gl~--~~~l~iG~rlrIG~-avLeVTq~r~PC~~~~~~--~g 140 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQ-AELFVAPAFGENLSTDGLT--ESNVYMGDIFRWGE-ALIQVSQPRSPCYKLNYH--FD 140 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGG-GGGCSTTTTCCSEEESSCC--TTTCBTTCEEEETT-EEEEEEEECCCCTHHHHH--TT
T ss_pred CeEEECCHHHHHHHHHHhCCC-cccCCcccccCCEEECCcc--hhhCCCCCEEEECC-EEEEEEeCcCccHhHHHH--hc
Confidence 579999999999999887621 0147899999999999964 44557 8999999 999999999999988775 44
Q ss_pred cCCCCCchHHHHHhhcCCCcchhccccCCCCeeeeeeeecCCCEEeeCCeEEEeee
Q psy2094 277 QKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYVAVS 332 (341)
Q Consensus 277 ~~~~~~epl~tL~~~R~~~~~~~~~~~~~~~~fGv~~~v~~~G~I~VGD~V~v~~~ 332 (341)
.. ...+.+.+. ...|+|+.|.++|.|++||+|.+.++
T Consensus 141 ~~----~~~~~~~~~---------------~r~G~y~rVl~~G~V~~GD~v~l~~r 177 (246)
T 1o65_A 141 IS----DIAQLMQNT---------------GKVGWLYSVIAPGKVSADAPLELVSR 177 (246)
T ss_dssp CT----THHHHHHHH---------------TCCCEEEEEEECEEEETTSCEEEEEC
T ss_pred Cc----CHHHHHhhC---------------CCcEEEEEEeeCcEEcCCCEEEEecC
Confidence 33 355566542 24799999999999999999999876
No 4
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=92.30 E-value=0.098 Score=45.77 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=32.3
Q ss_pred EceEEEeEEeccccccCceeeeeEEecccCcccc
Q psy2094 21 QVGYVTEINIYPLKSGYYLSVEKAFCDFKGLSRI 54 (341)
Q Consensus 21 ~~~~V~~L~iyPVKS~~g~~v~~~~l~~~Gl~~D 54 (341)
.+++|.+|++||.|+.....++++.++..||.+|
T Consensus 8 ~~g~v~~v~~~~~~g~~k~~v~~~~l~~~Gl~GD 41 (195)
T 1oru_A 8 MTAKAEGLYIADTKSFVTKQMDKLDFDYGGIPGD 41 (195)
T ss_dssp EEEEEEEEEECCSSCSSCEEESEEEEBTTBSTTS
T ss_pred ceeEEEEEEeCCCCCccceecCcEEEecCCcCCc
Confidence 4689999999999999999999999999999999
No 5
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=29.72 E-value=29 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.7
Q ss_pred ecCCCEEeeCCeEEEeeecccccc
Q psy2094 315 LYSRGTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 315 v~~~G~I~VGD~V~v~~~~~~~~~ 338 (341)
...+...++||.|.+.+..++|..
T Consensus 44 HDe~n~~k~GD~V~I~E~RPlSKt 67 (89)
T 1qd7_I 44 HDEHNEAKVGDIVKIMETRPLSAT 67 (89)
T ss_pred eCCccCCCCCCEEEEEEcccCCCC
Confidence 345568999999999999998864
No 6
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=21.08 E-value=51 Score=25.64 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=19.9
Q ss_pred eecCCCEEeeCCeEEEeeecccccc
Q psy2094 314 GLYSRGTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 314 ~v~~~G~I~VGD~V~v~~~~~~~~~ 338 (341)
+...+...++||.|.+.+..++|..
T Consensus 44 aHDe~n~~k~GD~V~I~E~RPlSKt 68 (105)
T 2vqe_Q 44 AHDPEEKYKLGDVVEIIESRPISKR 68 (105)
T ss_dssp EECTTCCCCTTCEEEEEEEEEEETT
T ss_pred EECCCCCCCCCCEEEEEEcccCCCC
Confidence 3344568999999999999988854
No 7
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=20.73 E-value=44 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=21.4
Q ss_pred eeeecCCCEEeeCCeEEEeeecccccc
Q psy2094 312 YCGLYSRGTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 312 ~~~v~~~G~I~VGD~V~v~~~~~~~~~ 338 (341)
|.+...+...++||.|.|.+..+++..
T Consensus 99 y~AHDe~n~~kvGD~V~I~E~RPLSKt 125 (142)
T 3bbn_Q 99 YQAHDPDNQFKVGDVVRLEKSRPISKT 125 (142)
T ss_dssp EEEECTTCCCCTTEEEEEEECCCSSSS
T ss_pred EEEECCCCCCCCCCEEEEEEccCCCCc
Confidence 344455678999999999999998864
No 8
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=20.26 E-value=36 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.0
Q ss_pred CCEEeeCCeEEEeeecccccc
Q psy2094 318 RGTVQKGDPVYVAVSEKLNAK 338 (341)
Q Consensus 318 ~G~I~VGD~V~v~~~~~~~~~ 338 (341)
....++||.|.+.+..++|..
T Consensus 47 ~n~~~~GD~V~I~e~RPlSKt 67 (80)
T 3r8n_Q 47 NNECGIGDVVEIRECRPLSKT 67 (80)
T ss_dssp GGCCCTTCEEEEEEEEEEETT
T ss_pred CCCCCCCCEEEEEEeccCCCc
Confidence 457999999999999998864
No 9
>3nqz_A MCP-02, secreted metalloprotease MCP02; autoprocessed complex, the thermolysin family, hydro; 2.05A {Pseudoalteromonas SP} PDB: 3nqy_A
Probab=19.66 E-value=2.1e+02 Score=23.80 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=27.8
Q ss_pred EeEEeccccccCceeeeeEEecccCcccccCCCCCCCceEEEEEcCCCeeEee
Q psy2094 26 TEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISN 78 (341)
Q Consensus 26 ~~L~iyPVKS~~g~~v~~~~l~~~Gl~~D~~~~~l~DR~f~l~d~~~g~~lt~ 78 (341)
.+|+||+-.+....-+=+..+...+-..- |-+.++|+.+|++|..
T Consensus 130 ~~Lvv~~~~~g~~~LaY~V~~~~~~~~p~--------~~~v~VDA~TG~vL~~ 174 (180)
T 3nqz_A 130 SRLAIWVDDQNKAHLVYEVSYVTYGKSPS--------RPYLIIDANTGEVLLS 174 (180)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEBCTTSCB--------CEEEEEETTTCCEEEE
T ss_pred ceEEEEECCCCCEEEEEEEEEEecCCCCc--------ccEEEEECCCchhHhh
Confidence 58999986433333222333333222233 8889999999998865
No 10
>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} SCOP: b.82.1.0
Probab=19.23 E-value=3.3e+02 Score=23.25 Aligned_cols=62 Identities=15% Similarity=0.052 Sum_probs=43.8
Q ss_pred CCCceEE-ceEEEeEEeccccccCc--eeeeeEEecccCcccccCCCCCCCceEEEEEcCCCeeEeecC
Q psy2094 15 IPTVWKQ-VGYVTEINIYPLKSGYY--LSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIA 80 (341)
Q Consensus 15 ~~~~~~~-~~~V~~L~iyPVKS~~g--~~v~~~~l~~~Gl~~D~~~~~l~DR~f~l~d~~~g~~lt~r~ 80 (341)
+...|+. -|+=.+|.+||-.+.+. .+++.|.+...|.-. .|.=.||..++.+. +|-.++...
T Consensus 20 ~~~pWkNGgG~TrEI~~~P~~~~~~F~wRiSiA~V~~~g~FS---~FpG~dR~l~lL~G-~gl~L~~~g 84 (193)
T 3esg_A 20 VRMPWKNGGGSTEEITRDAGTGLEGFGWRLSIADIGESGGFS---SFAGYQRVITVIQG-AGMVLTVDG 84 (193)
T ss_dssp EEEECTTSSEEEEEEEECCCBTTTBCSEEEEEEEECSSEECC---CCTTCEEEEEEEES-SCEEEEETT
T ss_pred CcccccCCCeEEEEEEEcCCCcCCCceEEEEEEEEcCCCCCC---CCCCceEEEEEEcC-CcEEEEeCC
Confidence 3456774 47888999999875544 557899998877432 24556699999987 676666543
Done!