RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2094
(341 letters)
>gnl|CDD|225758 COG3217, COG3217, Uncharacterized Fe-S protein [General function
prediction only].
Length = 270
Score = 103 bits (258), Expect = 1e-25
Identities = 75/307 (24%), Positives = 126/307 (41%), Gaps = 49/307 (15%)
Query: 24 YVTEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAHNR 83
++++ IYP+KS + +A D GL+ DR F+L + G +I+
Sbjct: 3 TLSQLYIYPVKSLRGERLSRALVDASGLA--------GDRRFMLVD-PDGRFITARRRPA 53
Query: 84 LVLVKVTALDKDLIQFSVHNDDT-YTPFVLNMADFNRSGSVHTIRMYEKDLVHAFDCGDA 142
+V D ++ + + + Y F AD R+ D A GDA
Sbjct: 54 MVRFTPAYEH-DGLRLTAPDGEELYVRF----ADAQRAPV-----EVWGDHFTADAAGDA 103
Query: 143 ASEWFSRFLLGKEDPDIRLGYDCDEQRKLNGTIYERYRHHYGDHITNEDMGKYAYLASYM 202
A++W S FL + L +D + R + +T +A +
Sbjct: 104 ANDWLSGFL----GRAVSLRWDGAGFAR-------RVKAGPAVPVT------FADGYPIL 146
Query: 203 LMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNWDWVRLNEDIILRGMKP 262
L N AS+ DL R + + FR N+++ + A+ ED+W +R+ + +KP
Sbjct: 147 LFNTASLADLRRR----VPANLEMERFRPNLVVEGEDAFAEDSWKSIRIG-GVRFDVVKP 201
Query: 263 CTRCTMTCLDPETGQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQ 322
C+RC T +DP+TG++ EPL TL +R + G G + G ++
Sbjct: 202 CSRCIFTTVDPDTGERRPGGEPLFTLNRFR-------TNPDAGGVLFGQNLIARNEGRIR 254
Query: 323 KGDPVYV 329
GD V V
Sbjct: 255 VGDAVEV 261
>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase.
Length = 805
Score = 77.6 bits (191), Expect = 1e-15
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 195 YAYLASYMLMNEASVKDLNERLQLKGET---EVSIHNFRGNIILSTDQAYEEDNWDWVRL 251
+A ++L++EASV+DLN RL E + FR N+++S +AY ED W + +
Sbjct: 671 FANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGGEAYAEDEWQSLSI 730
Query: 252 NEDIILRGMKPCTRCTMTCLDPETGQKNLRTEPLKTLRSYR 292
D + C RC M +D ETG N EPL TL SYR
Sbjct: 731 G-DAEFTVLGGCNRCQMINIDQETGLVNPSNEPLATLASYR 770
>gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This domain
is found to the N-terminus of pfam03473. The function of
this domain is unknown, however it is predicted to adopt
a beta barrel fold.
Length = 118
Score = 60.1 bits (146), Expect = 2e-11
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 17/131 (12%)
Query: 22 VGYVTEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAH 81
+ V+ + +YP+KS S+ +A GL DR +++ + S G +I+ H
Sbjct: 1 MARVSSLFVYPIKSCRGESLSRAELTPAGLRW--------DRRWMVVD-SDGKFITARRH 51
Query: 82 NRLVLVKVTALDKDLIQFSVHN-DDTYTPFVLNMADFNRSGSVHTIRMYEKDLVHAFDCG 140
RLVL++ T + + + P N V DCG
Sbjct: 52 PRLVLIRTTLDEDGGLTLTAPGMPPLSVPLAANKFQLVGV-LVW------GLSFSGRDCG 104
Query: 141 DAASEWFSRFL 151
DAA++WFS FL
Sbjct: 105 DAAADWFSDFL 115
>gnl|CDD|217583 pfam03473, MOSC, MOSC domain. The MOSC (MOCO sulfurase C-terminal)
domain is a superfamily of beta-strand-rich domains
identified in the molybdenum cofactor sulfurase and
several other proteins from both prokaryotes and
eukaryotes. These MOSC domains contain an absolutely
conserved cysteine and occur either as stand-alone
forms, or fused to other domains such as NifS-like
catalytic domain in Molybdenum cofactor sulfurase. The
MOSC domain is predicted to be a sulfur-carrier domain
that receives sulfur abstracted by the pyridoxal
phosphate-dependent NifS-like enzymes, on its conserved
cysteine, and delivers it for the formation of diverse
sulfur-metal clusters.
Length = 124
Score = 54.3 bits (131), Expect = 3e-09
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 43/154 (27%)
Query: 179 YRHHYGDHITNEDMGKYAYLASYMLMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTD 238
R H GD A L L++ S+ DLN RL G + FR N+++S
Sbjct: 11 LRVHGGDE--------RAVL----LISRESLADLNARL---GLRLLDPGRFRENLVVS-- 53
Query: 239 QAYEEDNW---DWVRLNEDIILRGMKPCTRCTMTCLDPETGQKNLRTEPLKTLRSYRGPI 295
EED W D +R+ ++L PC C M C+D ETG++ R
Sbjct: 54 -GLEEDTWCIGDRIRIGG-VLLEVSGPCKPCVMLCVDQETGERVGR-------------- 97
Query: 296 GEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYV 329
+ + G+Y + GT++ GD V +
Sbjct: 98 -------YLAAGKRGIYARVLRPGTIRVGDEVEL 124
>gnl|CDD|234976 PRK01736, PRK01736, hypothetical protein; Reviewed.
Length = 190
Score = 33.0 bits (76), Expect = 0.12
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 20/51 (39%)
Query: 137 FDCGDAASEWFSRFLLG---------KEDPDI-----------RLGYDCDE 167
FD DA + W + FLLG K + +LGYD DE
Sbjct: 97 FDRADALAGWVNHFLLGLGLAQPKLDKVSGETGEAIDDLRNIAQLGYDEDE 147
>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 230
Score = 30.6 bits (69), Expect = 1.1
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 88 KVTALDKDLIQFSVHNDDTYTPFVLNMADFNRSGSVHTIRMYEKDLVHAFDCGDAASEWF 147
+V KD I F+ + D VLN+A N G +R +K L D F
Sbjct: 108 EVKKSIKDAISFTKNFDG----LVLNLA-INYGGRNEIVRAVKKFLSSGLDLETLNENVF 162
Query: 148 SRFLLGKEDPDIRL 161
S+FL E PD+ L
Sbjct: 163 SKFLDNPELPDLDL 176
>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class.
This model describes a subclass of aspartate kinases.
These are mostly Lys-sensitive and not fused to
homoserine dehydrogenase, unlike some Thr-sensitive and
Met-sensitive forms. Homoserine dehydrogenase is part of
Thr and Met but not Lys biosynthetic pathways. Aspartate
kinase catalyzes a first step in the biosynthesis from
Asp of Lys (and its precursor diaminopimelate), Met, and
Thr. In E. coli, a distinct isozyme is inhibited by each
of the three amino acid products. The Met-sensitive (I)
and Thr-sensitive (II) forms are bifunctional enzymes
fused to homoserine dehydrogenases and form
homotetramers, while the Lys-sensitive form (III) is a
monofunctional homodimer. The Lys-sensitive enzyme of
Bacillus subtilis resembles the E. coli form but is an
alpha 2/beta 2 heterotetramer, where the beta subunit is
translated from an in-phase alternative initiator at
Met-246. The protein slr0657 from Synechocystis PCC6803
is extended by a duplication of the C-terminal region
corresponding to the beta chain. Incorporation of a
second copy of the C-terminal domain may be quite common
in this subgroup of aspartokinases [Amino acid
biosynthesis, Aspartate family].
Length = 401
Score = 30.0 bits (68), Expect = 2.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 68 FNRSKGTYISNIAHNRLVLVKVTALDKDLIQFSVH 102
F+ +GT I+N N LVK AL K++ + +VH
Sbjct: 233 FDPEEGTLITNSMENPP-LVKGIALRKNVTRVTVH 266
>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional.
Length = 376
Score = 28.6 bits (64), Expect = 4.7
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 260 MKPCTRCTMTCLDPETGQKNLRTEPLKTLRSYRGPIGEKARALEKGSP 307
MK TR +D TG T P+ +Y P GEK R + +P
Sbjct: 1 MKDATRTVREDIDEATGAI---TTPIYQTTAYHYPEGEKYRYSREANP 45
>gnl|CDD|153217 cd01746, GATase1_CTP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in Cytidine Triphosphate
Synthetase. Type 1 glutamine amidotransferase (GATase1)
domain found in Cytidine Triphosphate Synthetase (CTP).
CTP is involved in pyrimidine
ribonucleotide/ribonucleoside metabolism. CTPs produce
CTP from UTP and glutamine and regulate intracellular
CTP levels through interactions with four ribonucleotide
triphosphates. The enzyme exists as a dimer of identical
chains that aggregates as a tetramer. CTP is derived
form UTP in three separate steps involving two active
sites. In one active site, the UTP O4 oxygen is
activated by Mg-ATP-dependent phosphorylation, followed
by displacement of the resulting 4-phosphate moiety by
ammonia. At a separate site, ammonia is generated via
rate limiting glutamine hydrolysis (glutaminase)
activity. A gated channel that spans between the
glutamine hydrolysis and amidoligase active sites
provides a path for ammonia diffusion. CTPs belong to
the triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 235
Score = 28.3 bits (64), Expect = 5.1
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 160 RLG-YDCDEQ-----RKLNG--TIYERYRHHY 183
RLG Y + K G + ER+RH Y
Sbjct: 142 RLGAYPVILKPGTLAHKYYGKDEVEERHRHRY 173
>gnl|CDD|223578 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide
transport and metabolism].
Length = 533
Score = 28.3 bits (64), Expect = 6.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 8/32 (25%)
Query: 160 RLG-YDCDEQ-----RKLNGT--IYERYRHHY 183
RLG Y C + KL G IYER+RH Y
Sbjct: 430 RLGAYPCRLKPGTLAAKLYGKDEIYERHRHRY 461
>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase.
Length = 418
Score = 27.8 bits (62), Expect = 8.4
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 69 NRSKGTYISNIAHNRLVLVKVTAL-----DKDLIQFSVHNDDTYTPFVLNMADFNRSGSV 123
++K Y +I++ L + + L +K + +V D+T+ P VL+ A V
Sbjct: 162 GKTKVLYFESISNPTLTVADIPELARIAHEKGV---TVVVDNTFAPMVLSPARLGADVVV 218
Query: 124 HTIRMY---EKDLVHAFDCGDAA 143
H+I + D++ CG A
Sbjct: 219 HSISKFISGGADIIAGAVCGPAE 241
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.420
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,346,883
Number of extensions: 1643101
Number of successful extensions: 1248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1240
Number of HSP's successfully gapped: 19
Length of query: 341
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 243
Effective length of database: 6,590,910
Effective search space: 1601591130
Effective search space used: 1601591130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)