RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2094
         (341 letters)



>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella
           bronchiseptica [TaxId: 518]}
          Length = 128

 Score = 53.8 bits (129), Expect = 9e-10
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 24/141 (17%)

Query: 25  VTEINIYPLKSGYYLSVEKAFCDFKGLSRIGQGYPLSDRCFLLFNRSKGTYISNIAHNRL 84
           ++     P+      +  +A                  + +L+ N   G +++     RL
Sbjct: 1   MSTTAYQPIAECGATTQSEAA--------------AYQKRWLVAN-DAGQWLNRDLCPRL 45

Query: 85  VLVKVTALDKDLIQFSVHNDDTYTPFVLNMADFNRSGSVHTIRMYEKDLVHAFDCGDAAS 144
             V V      L+  +        P  +   D +    +          V   D G+ A+
Sbjct: 46  AEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGE----QTVDVVDEGELAA 101

Query: 145 EWFSRFL-----LGKEDPDIR 160
            W S        + K  PD+ 
Sbjct: 102 AWISNHAGVPCRILKVHPDMA 122


>d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis
           [TaxId: 1423]}
          Length = 182

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 16/173 (9%), Positives = 37/173 (21%), Gaps = 25/173 (14%)

Query: 162 GYDCDEQRKLNGTIYERYRHHYGDHITNEDMGKYAYLASYMLMNEASVKDLNERLQLKGE 221
           G   D    L      R               +        +++     ++  ++   G 
Sbjct: 34  GIPGDLHFGLTKKAGAREPMFSRGT-------EIFNRRQISIVSIEECNEIALKM---GV 83

Query: 222 TEVSIHNFRGNIILS-TDQAYEEDNWDWVRLNEDIILRGMKPCTRCTMTCLDPETGQKNL 280
             +       N+ +S             +       L        C       ++   + 
Sbjct: 84  PRILPEWLGANVAVSGMPDLTSLKEGSRIIFPSGAALLCEGENDPCIQPGEVIQSYYPDQ 143

Query: 281 RTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQKGDPVYVAVSE 333
                             +  +       G+ C +   G V  GD + V   +
Sbjct: 144 P--------------KLASAFVRHALGIRGIVCIVERPGAVYTGDEIEVHSYQ 182


>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli
           [TaxId: 562]}
          Length = 233

 Score = 29.9 bits (67), Expect = 0.39
 Identities = 14/125 (11%), Positives = 28/125 (22%), Gaps = 23/125 (18%)

Query: 203 LMNEASVKDLNERLQLKGETEVSIHNFRGNIILSTDQAYEEDNWDWVRLNEDIILRGMKP 262
                           + E       F  N+             D  R  E  +++  +P
Sbjct: 67  HYPREHYLYWAREFPEQAE-LFVAPAFGENLSTDGLTESNVYMGDIFRWGE-ALIQVSQP 124

Query: 263 CTRCTMTCLDPETGQKNLRTEPLKTLRSYRGPIGEKARALEKGSPRLGLYCGLYSRGTVQ 322
            + C    L+      ++      T +                    G    + + G V 
Sbjct: 125 RSPCYK--LNYHFDISDIAQLMQNTGKV-------------------GWLYSVIAPGKVS 163

Query: 323 KGDPV 327
              P+
Sbjct: 164 ADAPL 168


>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 208

 Score = 28.1 bits (62), Expect = 1.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 184 GDHITNEDMGKYAYLASYMLMNEASVKDLNERLQLKGETEVSIHNFRG 231
           G      D+ +YA     M+++  ++ D  +R+ L+ E+E  I    G
Sbjct: 150 GSRQFERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLG 197


>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 250

 Score = 26.1 bits (57), Expect = 6.2
 Identities = 14/111 (12%), Positives = 27/111 (24%), Gaps = 3/111 (2%)

Query: 106 TYTPFVLNMADFNRSGSVHTIRMYEKDLVHAFDCGDAASEWFSRFLLGKEDPDIRLGYDC 165
               F  N+A    + S          ++                 LG     I+ G   
Sbjct: 100 AVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPG-TL 158

Query: 166 DEQRKLNGTIYERYRHHYGDHITNEDMGKYAYLASYMLMNEASVKDLNERL 216
             +      + ER+RH Y   +    +         +      ++     L
Sbjct: 159 LHRLYGKEEVLERHRHRY--EVNPLYVDGLERAGLVVSATTPGMRGRGAGL 207


>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 188

 Score = 25.4 bits (55), Expect = 8.3
 Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 213 NERLQLKGETEVSIHNFRGNIILSTDQAYEEDNWDWVRLNEDIILRGMKPCTRCTMTCLD 272
           N    + GE   ++    G   +       + N         +      P  +  + C  
Sbjct: 36  NTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPA-KFVIHCNS 94

Query: 273 P 273
           P
Sbjct: 95  P 95


>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus
           [TaxId: 10497]}
          Length = 174

 Score = 25.4 bits (55), Expect = 8.4
 Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 1/51 (1%)

Query: 181 HHYGDHITNEDMGKYAYLASYMLMNEASVKDLNERLQLKGETEVSIHNFRG 231
           H  G       +           +N+  +      + LK  TE  +    G
Sbjct: 115 HFTGPVSYLIRIRAAL-KKKNYKLNQYGLFKNQTLVPLKITTEKELIKELG 164


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,315,437
Number of extensions: 61181
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 10
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)