BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2097
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 42/55 (76%), Gaps = 4/55 (7%)
Query: 1 MLDGVVNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPR 55
MLDG V DAVEAR+LGLN NHI IYSASWGPEDDG+TVDGP L A E F R
Sbjct: 119 MLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARL----AEEAFFR 169
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 1 MLDGVVNDAVEARAL--GLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEG 52
+L G + EA +L GL++N DIYS SWGP DDGR + GP L+ +G
Sbjct: 125 ILSGDITTEDEAASLIYGLDVN--DIYSCSWGPADDGRHLQGPSDLVKKALVKG 176
>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
Length = 477
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 1 MLDGVVNDAVEARAL--GLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEG 52
+L G + EA +L GL++N DIYS SWGP DDGR + GP L+ +G
Sbjct: 123 ILSGDITTEDEAASLIYGLDVN--DIYSCSWGPADDGRHLQGPSDLVKKALVKG 174
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 1 MLDGVVNDAVEARAL--GLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEG 52
+L G + EA +L GL++N DIYS SWGP DDGR + GP L+ +G
Sbjct: 132 ILSGDITTEDEAASLIYGLDVN--DIYSCSWGPADDGRHLQGPSDLVKKALVKG 183
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus
Halodurans C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus
Halodurans C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus
Halodurans C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus
Halodurans C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus
Halodurans C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus
Halodurans C-125
Length = 448
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 33 DDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68
DDG +DG G L G H++F EPG T+W
Sbjct: 45 DDGPAIDGTGLHLF----PGMVDVHVHFNEPGRTEW 76
>pdb|3FD3|A Chain A, Structure Of The C-Terminal Domains Of A Lysr Family
Protein From Agrobacterium Tumefaciens Str. C58
Length = 208
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 6 VNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHL 58
V A ARA GL N D ASW G V P L +T+GF ++ L
Sbjct: 92 VTPAALARAPGLTFNQKDRLQASWIRTALGEDVSYPTHWL--PSTDGFVKASL 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,265,365
Number of Sequences: 62578
Number of extensions: 132422
Number of successful extensions: 227
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 10
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)