Query psy2097
Match_columns 91
No_of_seqs 103 out of 254
Neff 3.5
Searched_HMMs 46136
Date Sat Aug 17 00:10:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3526|consensus 99.9 3.6E-23 7.9E-28 172.9 5.2 66 1-66 242-313 (629)
2 KOG3525|consensus 99.6 1.6E-15 3.5E-20 123.8 2.9 66 1-66 114-184 (431)
3 cd04059 Peptidases_S8_Protein_ 98.1 1.6E-05 3.4E-10 59.0 7.7 66 3-68 120-190 (297)
4 cd07490 Peptidases_S8_6 Peptid 96.8 0.0019 4.1E-08 46.8 3.9 43 20-67 97-139 (254)
5 cd07487 Peptidases_S8_1 Peptid 96.6 0.0024 5.1E-08 46.1 3.6 45 21-68 106-150 (264)
6 cd07481 Peptidases_S8_Bacillop 96.6 0.0039 8.5E-08 46.1 4.7 53 20-78 118-170 (264)
7 cd07493 Peptidases_S8_9 Peptid 96.6 0.0051 1.1E-07 45.3 5.0 49 20-68 103-159 (261)
8 cd07483 Peptidases_S8_Subtilis 96.5 0.0042 9.2E-08 47.2 4.5 60 6-70 125-185 (291)
9 cd07498 Peptidases_S8_15 Pepti 96.4 0.0046 1E-07 44.6 4.0 48 20-70 96-144 (242)
10 cd07474 Peptidases_S8_subtilis 96.4 0.0034 7.4E-08 46.4 3.2 41 21-66 119-159 (295)
11 cd07492 Peptidases_S8_8 Peptid 96.4 0.0042 9E-08 44.5 3.5 50 13-67 82-132 (222)
12 cd07480 Peptidases_S8_12 Pepti 96.2 0.0067 1.4E-07 45.8 4.1 46 21-66 102-168 (297)
13 cd07473 Peptidases_S8_Subtilis 96.2 0.0095 2E-07 43.3 4.4 54 8-69 108-161 (259)
14 cd04848 Peptidases_S8_Autotran 96.1 0.011 2.4E-07 42.1 4.7 48 20-67 102-157 (267)
15 cd07496 Peptidases_S8_13 Pepti 95.9 0.011 2.3E-07 44.3 3.9 44 19-68 135-178 (285)
16 cd07497 Peptidases_S8_14 Pepti 95.7 0.013 2.8E-07 45.9 3.5 51 14-66 123-178 (311)
17 cd07476 Peptidases_S8_thiazoli 95.5 0.011 2.4E-07 44.8 2.8 55 10-67 94-149 (267)
18 cd07485 Peptidases_S8_Fervidol 95.1 0.031 6.8E-07 41.5 3.8 60 8-67 110-173 (273)
19 cd07482 Peptidases_S8_Lantibio 95.0 0.039 8.5E-07 40.5 4.0 51 20-70 105-159 (294)
20 cd07484 Peptidases_S8_Thermita 94.9 0.028 6.1E-07 41.1 3.2 42 20-68 124-165 (260)
21 cd07494 Peptidases_S8_10 Pepti 94.4 0.067 1.5E-06 41.3 4.3 49 20-68 103-157 (298)
22 cd07475 Peptidases_S8_C5a_Pept 94.4 0.067 1.5E-06 40.8 4.1 45 20-67 143-187 (346)
23 cd00306 Peptidases_S8_S53 Pept 94.3 0.1 2.2E-06 35.7 4.5 48 19-71 99-147 (241)
24 cd04843 Peptidases_S8_11 Pepti 93.8 0.17 3.6E-06 38.8 5.3 49 20-69 104-155 (277)
25 cd07477 Peptidases_S8_Subtilis 93.6 0.087 1.9E-06 37.3 3.3 53 8-68 84-136 (229)
26 PF00082 Peptidase_S8: Subtila 91.5 0.062 1.3E-06 38.9 0.3 59 19-78 102-160 (282)
27 cd04077 Peptidases_S8_PCSK9_Pr 91.2 0.43 9.3E-06 34.8 4.4 40 21-68 119-158 (255)
28 cd04842 Peptidases_S8_Kp43_pro 90.1 0.48 1E-05 34.9 3.9 45 22-71 116-162 (293)
29 cd05561 Peptidases_S8_4 Peptid 89.5 0.43 9.4E-06 35.3 3.3 40 20-67 92-131 (239)
30 cd07479 Peptidases_S8_SKI-1_li 88.3 0.49 1.1E-05 35.4 2.9 48 13-66 90-138 (255)
31 cd07489 Peptidases_S8_5 Peptid 85.9 1.5 3.1E-05 33.3 4.3 44 20-68 123-166 (312)
32 KOG3052|consensus 84.6 0.95 2.1E-05 37.0 2.9 72 7-84 125-227 (311)
33 cd04852 Peptidases_S8_3 Peptid 83.2 1.5 3.3E-05 33.2 3.3 44 20-67 172-215 (307)
34 cd07491 Peptidases_S8_7 Peptid 81.2 2.7 5.9E-05 31.6 4.1 57 11-68 91-148 (247)
35 PTZ00262 subtilisin-like prote 77.5 2.2 4.9E-05 37.7 2.9 41 20-67 434-474 (639)
36 PF13508 Acetyltransf_7: Acety 73.6 1.1 2.4E-05 27.0 0.1 30 56-86 16-45 (79)
37 cd04847 Peptidases_S8_Subtilis 72.6 9.6 0.00021 28.6 4.9 49 20-70 101-150 (291)
38 cd07488 Peptidases_S8_2 Peptid 69.1 13 0.00027 28.3 4.9 48 19-67 83-134 (247)
39 cd05562 Peptidases_S53_like Pe 65.2 7.6 0.00016 29.7 3.1 45 20-67 89-134 (275)
40 cd04056 Peptidases_S53 Peptida 64.9 10 0.00022 30.0 3.8 49 14-65 112-162 (361)
41 KOG3396|consensus 62.3 1.9 4.1E-05 32.3 -0.7 21 66-86 84-104 (150)
42 PRK10146 aminoalkylphosphonic 54.9 2.7 5.7E-05 27.2 -0.9 17 70-86 79-95 (144)
43 PF00583 Acetyltransf_1: Acety 52.6 3.5 7.6E-05 24.1 -0.5 17 70-86 28-44 (83)
44 PF14542 Acetyltransf_CG: GCN5 51.1 8.2 0.00018 24.6 1.0 25 62-86 17-41 (78)
45 COG0454 WecD Histone acetyltra 50.3 5.8 0.00013 21.2 0.2 14 73-86 87-100 (156)
46 cd04857 Peptidases_S8_Tripepti 48.8 14 0.00029 30.9 2.2 43 20-66 243-286 (412)
47 PHA00673 acetyltransferase dom 38.7 9.2 0.0002 28.0 -0.2 18 69-86 87-104 (154)
48 PRK03624 putative acetyltransf 37.5 12 0.00026 23.3 0.2 30 56-86 58-87 (140)
49 COG4821 Uncharacterized protei 36.6 21 0.00045 28.6 1.4 13 53-65 36-48 (243)
50 PF08445 FR47: FR47-like prote 36.6 8.4 0.00018 24.5 -0.7 19 68-86 22-40 (86)
51 TIGR01575 rimI ribosomal-prote 35.8 7.8 0.00017 24.0 -0.9 18 69-86 56-73 (131)
52 PF13523 Acetyltransf_8: Acety 35.6 10 0.00022 25.1 -0.4 13 74-86 85-97 (152)
53 PF03497 Anthrax_toxA: Anthrax 35.1 11 0.00023 28.7 -0.4 25 7-32 44-68 (179)
54 PF12609 DUF3774: Wound-induce 33.7 19 0.00041 23.7 0.7 8 24-31 72-79 (79)
55 TIGR03448 mycothiol_MshD mycot 33.6 19 0.00041 26.5 0.7 31 56-86 59-89 (292)
56 PF13527 Acetyltransf_9: Acety 32.6 10 0.00022 24.0 -0.8 17 70-86 75-91 (127)
57 PTZ00330 acetyltransferase; Pr 30.6 9.1 0.0002 24.7 -1.3 18 69-86 84-101 (147)
58 smart00162 SAPA Saposin/surfac 29.0 24 0.00052 20.4 0.5 7 26-32 4-10 (34)
59 PF13964 Kelch_6: Kelch motif 28.5 38 0.00082 18.9 1.3 11 56-66 12-22 (50)
60 PF14312 FG-GAP_2: FG-GAP repe 27.3 35 0.00076 20.1 1.0 10 52-61 40-49 (49)
61 PRK07922 N-acetylglutamate syn 25.3 29 0.00063 24.3 0.5 20 67-86 70-89 (169)
62 PRK09491 rimI ribosomal-protei 24.4 16 0.00035 23.9 -0.9 17 70-86 66-82 (146)
63 PF13673 Acetyltransf_10: Acet 23.4 19 0.00042 22.1 -0.7 18 69-86 66-83 (117)
64 PLN00165 hypothetical protein; 23.3 40 0.00087 23.1 0.8 9 24-32 80-88 (88)
65 PRK09831 putative acyltransfer 22.8 19 0.00041 23.9 -0.9 18 69-86 74-91 (147)
66 PRK10140 putative acetyltransf 22.3 18 0.00039 23.5 -1.0 15 73-87 84-98 (162)
67 PRK07757 acetyltransferase; Pr 21.6 35 0.00077 22.3 0.3 17 70-86 68-84 (152)
68 PF01436 NHL: NHL repeat; Int 21.5 71 0.0015 16.5 1.4 12 56-67 13-24 (28)
69 PF07646 Kelch_2: Kelch motif; 20.9 64 0.0014 18.0 1.3 10 55-64 11-20 (49)
70 TIGR03827 GNAT_ablB putative b 20.7 32 0.0007 25.7 -0.0 21 66-86 182-202 (266)
71 TIGR02406 ectoine_EctA L-2,4-d 20.5 25 0.00054 24.1 -0.7 17 70-86 69-85 (157)
72 PLN02706 glucosamine 6-phospha 20.3 22 0.00047 23.3 -1.0 13 74-86 92-104 (150)
73 PF07076 DUF1344: Protein of u 20.3 27 0.00059 22.5 -0.4 22 32-53 21-42 (61)
No 1
>KOG3526|consensus
Probab=99.88 E-value=3.6e-23 Score=172.91 Aligned_cols=66 Identities=44% Similarity=0.720 Sum_probs=62.1
Q ss_pred CCCcc-cCcHHHHHHhccCCCcceeecCCCCCCCCCCccccChHHHHHHHH----hcCCC-CeEEEEccCCC
Q psy2097 1 MLDGV-VNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQAT----EGFPR-SHLYFIEPGVT 66 (91)
Q Consensus 1 mLdg~-vTD~~EA~ALsy~~~~idIYScSWGP~DdG~tvegP~~Lt~~al~----~Gr~g-GsIYVfa~GNg 66 (91)
|||++ +||++||.++++.++.|||||+||||.||||||+||..++++|+. ||||| |||||||||.|
T Consensus 242 mldqpymtdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdg 313 (629)
T KOG3526|consen 242 MLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDG 313 (629)
T ss_pred ecCCchhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCC
Confidence 89999 999999999999999999999999999999999999999999954 57788 99999999984
No 2
>KOG3525|consensus
Probab=99.55 E-value=1.6e-15 Score=123.81 Aligned_cols=66 Identities=48% Similarity=0.808 Sum_probs=61.7
Q ss_pred CCCcccCcHHHHHHhccCCCcceeecCCCCCCCCCCccccChHHHHHHHHh----cCCC-CeEEEEccCCC
Q psy2097 1 MLDGVVNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATE----GFPR-SHLYFIEPGVT 66 (91)
Q Consensus 1 mLdg~vTD~~EA~ALsy~~~~idIYScSWGP~DdG~tvegP~~Lt~~al~~----Gr~g-GsIYVfa~GNg 66 (91)
||++.++|++||.++.|+++++|||||||+|.||++++++|..+..+|++. ||.+ |+|+|||+||+
T Consensus 114 ~l~~~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ng 184 (431)
T KOG3525|consen 114 MLAGCVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNG 184 (431)
T ss_pred eeeeecccceecccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCc
Confidence 789999999999999999999999999999999999999999999998776 4566 99999999993
No 3
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=98.11 E-value=1.6e-05 Score=59.01 Aligned_cols=66 Identities=52% Similarity=0.844 Sum_probs=54.0
Q ss_pred CcccCcHHHHHHhccCCCcceeecCCCCCCCCCCccccChHHHHHH----HHhcCCC-CeEEEEccCCCCc
Q psy2097 3 DGVVNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQ----ATEGFPR-SHLYFIEPGVTKW 68 (91)
Q Consensus 3 dg~vTD~~EA~ALsy~~~~idIYScSWGP~DdG~tvegP~~Lt~~a----l~~Gr~g-GsIYVfa~GNg~~ 68 (91)
+...++..++.++.+..+.++|.++|||+......+++|..+..++ +++++++ |-|+|||+||...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~ 190 (297)
T cd04059 120 DGDVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGN 190 (297)
T ss_pred CCccccHHHHHHHhcccCCceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCC
Confidence 3446678899999999999999999999988887788888776555 5556665 9999999999554
No 4
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.77 E-value=0.0019 Score=46.78 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=30.7
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCC
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTK 67 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~ 67 (91)
+.++|+++|||..+.. ..|.....+++++. .|-|+||++||..
T Consensus 97 ~~~~Vin~S~g~~~~~---~~~~~~~~~~~~~~--~g~lvV~aAGN~g 139 (254)
T cd07490 97 KDADVVSMSLGGTYYS---EDPLEEAVEALSNQ--TGALFVVSAGNEG 139 (254)
T ss_pred CCCCEEEECCCcCCCC---CcHHHHHHHHHHHc--CCCEEEEeCCCCC
Confidence 5689999999987765 33444444555543 4899999999953
No 5
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.64 E-value=0.0024 Score=46.12 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=32.7
Q ss_pred cceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCc
Q psy2097 21 HIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68 (91)
Q Consensus 21 ~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~ 68 (91)
.++|+++|||..... ........+++++.++.|-|+|+++||...
T Consensus 106 ~~~Iin~S~g~~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~ 150 (264)
T cd07487 106 NIRVVNLSLGAPPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGP 150 (264)
T ss_pred CceEEEeccCCCCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 799999999987654 112233345666666679999999999543
No 6
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=96.62 E-value=0.0039 Score=46.11 Aligned_cols=53 Identities=13% Similarity=0.091 Sum_probs=34.2
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCccccccccCCC
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPS 78 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~s~~d~~~~~~ 78 (91)
+.+||.++|||.... .......+++.-+..|-|+||++||...........|.
T Consensus 118 ~~~~Iin~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa 170 (264)
T cd07481 118 LAPDVINNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPA 170 (264)
T ss_pred cCCeEEEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCC
Confidence 557999999998765 12222345555556699999999996543333333343
No 7
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.56 E-value=0.0051 Score=45.31 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=35.1
Q ss_pred CcceeecCCCCCCCCCCc--------cccChHHHHHHHHhcCCCCeEEEEccCCCCc
Q psy2097 20 NHIDIYSASWGPEDDGRT--------VDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~t--------vegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~ 68 (91)
+.++|.++|||....-.. ++++.....+++++.+..|-++|||+||...
T Consensus 103 ~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~ 159 (261)
T cd07493 103 LGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGS 159 (261)
T ss_pred cCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCC
Confidence 458999999997655432 3344344456777777779999999999543
No 8
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=96.53 E-value=0.0042 Score=47.23 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=39.4
Q ss_pred cCcHHHHHHhccCC-CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCccc
Q psy2097 6 VNDAVEARALGLNI-NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSI 70 (91)
Q Consensus 6 vTD~~EA~ALsy~~-~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~s~ 70 (91)
..+...++|+.|.. +.++|.++|||..- ........+|++.-+..|.|+|||+||.....
T Consensus 125 ~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~-----~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~ 185 (291)
T cd07483 125 ERDKDIANAIRYAVDNGAKVINMSFGKSF-----SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDL 185 (291)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEeCCCCCC-----CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCC
Confidence 34445556665533 35899999999631 11224455677777767999999999965433
No 9
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.43 E-value=0.0046 Score=44.60 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=34.3
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCC-CeEEEEccCCCCccc
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPR-SHLYFIEPGVTKWSI 70 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~g-GsIYVfa~GNg~~s~ 70 (91)
+.++|.++|||...... .......+++++.+.+ |-|+||++||.....
T Consensus 96 ~~~~Vin~S~g~~~~~~---~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~ 144 (242)
T cd07498 96 NGADVISNSWGGSDSTE---SISSAIDNAATYGRNGKGGVVLFAAGNSGRSV 144 (242)
T ss_pred CCCeEEEeccCCCCCCc---hHHHHHHHHHHHHhhcCCeEEEEecCCCCCcc
Confidence 45899999999865542 1122334568888885 999999999965443
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.38 E-value=0.0034 Score=46.39 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=31.6
Q ss_pred cceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCC
Q psy2097 21 HIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVT 66 (91)
Q Consensus 21 ~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg 66 (91)
.++|.++|||..... +.....+++++....|-|+||++||.
T Consensus 119 ~~~Iin~S~g~~~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~ 159 (295)
T cd07474 119 GMDVINLSLGSSVNG-----PDDPDAIAINNAVKAGVVVVAAAGNS 159 (295)
T ss_pred CCCEEEeCCCCCCCC-----CCCHHHHHHHHHHhcCCEEEEECCCC
Confidence 689999999986544 44455566666666689999999994
No 11
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.37 E-value=0.0042 Score=44.51 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHhccCC-CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCC
Q psy2097 13 RALGLNI-NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTK 67 (91)
Q Consensus 13 ~ALsy~~-~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~ 67 (91)
+|+.|-. +.++|.++|||...+. +.....+++++....|.|+||++||..
T Consensus 82 ~ai~~a~~~~v~Vin~S~G~~~~~-----~~~~~~~~~~~a~~~g~l~V~aagN~~ 132 (222)
T cd07492 82 KALRACVENDIRIVNLSLGGPGDR-----DFPLLKELLEYAYKAGGIIVAAAPNNN 132 (222)
T ss_pred HHHHHHHHCCCCEEEeCCCCCCCC-----cCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 3443333 5689999999987654 233344555555555889999999943
No 12
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.23 E-value=0.0067 Score=45.84 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=29.5
Q ss_pred cceeecCCCCCCCCCCcccc--C---hHHHHHHHHhcC---------------CC-CeEEEEccCCC
Q psy2097 21 HIDIYSASWGPEDDGRTVDG--P---GPLLMVQATEGF---------------PR-SHLYFIEPGVT 66 (91)
Q Consensus 21 ~idIYScSWGP~DdG~tveg--P---~~Lt~~al~~Gr---------------~g-GsIYVfa~GNg 66 (91)
..+|.++|||...+|+...+ + ..-.++++.+-. .+ |.|+||++||.
T Consensus 102 g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~ 168 (297)
T cd07480 102 GADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNE 168 (297)
T ss_pred CCCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCC
Confidence 36999999999887764332 1 111233322222 44 99999999994
No 13
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.15 E-value=0.0095 Score=43.27 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=36.9
Q ss_pred cHHHHHHhccCCCcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCcc
Q psy2097 8 DAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWS 69 (91)
Q Consensus 8 D~~EA~ALsy~~~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~s 69 (91)
++.+|-....+ +.++|.++|||.... .....+++++....|-|+||++||....
T Consensus 108 ~~~~a~~~a~~-~~~~vin~S~G~~~~-------~~~~~~~~~~~~~~g~ivV~aaGN~g~~ 161 (259)
T cd07473 108 DAIKAIDYAVD-MGAKIINNSWGGGGP-------SQALRDAIARAIDAGILFVAAAGNDGTN 161 (259)
T ss_pred HHHHHHHHHHH-CCCeEEEeCCCCCCC-------CHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 44444333333 679999999998655 3344566666666699999999995443
No 14
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=96.14 E-value=0.011 Score=42.08 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=33.8
Q ss_pred CcceeecCCCCCCCCCCccc--------cChHHHHHHHHhcCCCCeEEEEccCCCC
Q psy2097 20 NHIDIYSASWGPEDDGRTVD--------GPGPLLMVQATEGFPRSHLYFIEPGVTK 67 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tve--------gP~~Lt~~al~~Gr~gGsIYVfa~GNg~ 67 (91)
+.++|.+.|||+.......+ .......+++++-...|-|+|+++||..
T Consensus 102 ~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~ 157 (267)
T cd04848 102 SGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDG 157 (267)
T ss_pred CCCeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCC
Confidence 45899999999988665433 1223334456666666999999999943
No 15
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=95.93 E-value=0.011 Score=44.27 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=33.2
Q ss_pred CCcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCc
Q psy2097 19 INHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68 (91)
Q Consensus 19 ~~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~ 68 (91)
.+..+|.++|||..... .....+++++.+..|.|.|||+||...
T Consensus 135 ~~~~~Iin~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~ 178 (285)
T cd07496 135 PNPAKVINLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGS 178 (285)
T ss_pred CCCCeEEEeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 46689999999985432 334456777777779999999999543
No 16
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=95.65 E-value=0.013 Score=45.86 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=32.0
Q ss_pred HhccC-CCcceeecCCCCCCCCCCccccCh----HHHHHHHHhcCCCCeEEEEccCCC
Q psy2097 14 ALGLN-INHIDIYSASWGPEDDGRTVDGPG----PLLMVQATEGFPRSHLYFIEPGVT 66 (91)
Q Consensus 14 ALsy~-~~~idIYScSWGP~DdG~tvegP~----~Lt~~al~~Gr~gGsIYVfa~GNg 66 (91)
++.|. .+.+||.++|||....-.+...|+ .....++.+ +.|-++|||+||.
T Consensus 123 ~~~~~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~--~~Gv~vV~AAGN~ 178 (311)
T cd07497 123 SWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVT--YTGVPIVSAAGNG 178 (311)
T ss_pred hhhhccCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHh--cCCCEEEEeCCCC
Confidence 33443 467999999999865543333332 223333432 4499999999994
No 17
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=95.55 E-value=0.011 Score=44.81 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=37.6
Q ss_pred HHHHHhccCC-CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCC
Q psy2097 10 VEARALGLNI-NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTK 67 (91)
Q Consensus 10 ~EA~ALsy~~-~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~ 67 (91)
..++|+.|.. +.+||-++|||+...- ..+.....+|++.-+..|-|+|||+||..
T Consensus 94 ~i~~ai~~a~~~g~~VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g 149 (267)
T cd07476 94 DLARAINLALEQGAHIINISGGRLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEG 149 (267)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 4445554444 3489999999975421 12344556777777777999999999954
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=95.07 E-value=0.031 Score=41.53 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=32.2
Q ss_pred cHHHHHHhccCC-CcceeecCCCCCCCCCCccccChHHHHHHHHhcC--CC-CeEEEEccCCCC
Q psy2097 8 DAVEARALGLNI-NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGF--PR-SHLYFIEPGVTK 67 (91)
Q Consensus 8 D~~EA~ALsy~~-~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr--~g-GsIYVfa~GNg~ 67 (91)
+...++|+.|.. +.++|.++|||......--..-......+.++.+ .. |.|+|||+||..
T Consensus 110 ~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g 173 (273)
T cd07485 110 DDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSY 173 (273)
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCC
Confidence 333444443322 3589999999986532111101111123344432 22 999999999953
No 19
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=94.95 E-value=0.039 Score=40.54 Aligned_cols=51 Identities=8% Similarity=-0.039 Sum_probs=32.9
Q ss_pred CcceeecCCCCCCCCCCccccCh----HHHHHHHHhcCCCCeEEEEccCCCCccc
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPG----PLLMVQATEGFPRSHLYFIEPGVTKWSI 70 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~----~Lt~~al~~Gr~gGsIYVfa~GNg~~s~ 70 (91)
+.++|.++|||........+.+. ..-.+++++.+..|-|+|||+||.....
T Consensus 105 ~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 105 DGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 34899999999755443322111 1223456665566999999999965544
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=94.95 E-value=0.028 Score=41.05 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=31.6
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCc
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~ 68 (91)
+.++|.+.|||.+. +.....++++.-...|.|+|+++||...
T Consensus 124 ~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~ 165 (260)
T cd07484 124 KGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGV 165 (260)
T ss_pred CCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 34899999999876 3344556666666679999999999544
No 21
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=94.40 E-value=0.067 Score=41.29 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=31.8
Q ss_pred CcceeecCCCCCCCCCCc------cccChHHHHHHHHhcCCCCeEEEEccCCCCc
Q psy2097 20 NHIDIYSASWGPEDDGRT------VDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~t------vegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~ 68 (91)
+..||.++|||....... +........+|+++-++.|-+.|+|+||..+
T Consensus 103 ~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~ 157 (298)
T cd07494 103 LSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW 157 (298)
T ss_pred cCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC
Confidence 568999999997432211 1111222345677766779999999999543
No 22
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=94.36 E-value=0.067 Score=40.75 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=34.0
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCC
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTK 67 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~ 67 (91)
+.++|.++|||....-. .+.....+++++-+..|-++||++||..
T Consensus 143 ~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g 187 (346)
T cd07475 143 LGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDG 187 (346)
T ss_pred cCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCC
Confidence 35789999999865543 3445556777777777999999999954
No 23
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=94.29 E-value=0.1 Score=35.65 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=33.3
Q ss_pred CCcceeecCCCCCCCCCCccccChHHHHHHHHhcCCC-CeEEEEccCCCCcccc
Q psy2097 19 INHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPR-SHLYFIEPGVTKWSIE 71 (91)
Q Consensus 19 ~~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~g-GsIYVfa~GNg~~s~~ 71 (91)
.+.++|.++|||..... +.....+++.+-... |-|+|+++||......
T Consensus 99 ~~~~~iin~S~g~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~ 147 (241)
T cd00306 99 DQGADVINLSLGGPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGG 147 (241)
T ss_pred ccCCCEEEeCCCCCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCC
Confidence 47799999999986554 333334444444444 9999999999655443
No 24
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=93.76 E-value=0.17 Score=38.84 Aligned_cols=49 Identities=8% Similarity=-0.017 Sum_probs=34.8
Q ss_pred CcceeecCCCCCCCCCCccccChH---HHHHHHHhcCCCCeEEEEccCCCCcc
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGP---LLMVQATEGFPRSHLYFIEPGVTKWS 69 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~---Lt~~al~~Gr~gGsIYVfa~GNg~~s 69 (91)
..+.+-+.|||..+...... |.. ...+|+++-+..|.++|+++||....
T Consensus 104 ~~v~~in~s~g~~~~~~~~~-p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~ 155 (277)
T cd04843 104 GDVILLEMQTGGPNNGYPPL-PVEYEQANFDAIRTATDLGIIVVEAAGNGGQD 155 (277)
T ss_pred CCEEEEEccccCCCcCcccC-cchhhHHHHHHHHHHHhCCcEEEEeCCCCCcc
Confidence 44677899999987765442 332 23456777776799999999996544
No 25
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=93.58 E-value=0.087 Score=37.35 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=33.5
Q ss_pred cHHHHHHhccCCCcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCc
Q psy2097 8 DAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68 (91)
Q Consensus 8 D~~EA~ALsy~~~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~ 68 (91)
++.+|-....+ +.++|.++|||..++- ....+++++-...|-|+||++||...
T Consensus 84 ~l~~ai~~a~~-~~~~Vin~S~g~~~~~-------~~~~~~~~~a~~~giliv~aaGN~~~ 136 (229)
T cd07477 84 DIIAGIEWAIE-NGMDIINMSLGGPSDS-------PALREAIKKAYAAGILVVAAAGNSGN 136 (229)
T ss_pred HHHHHHHHHHH-CCCCEEEECCccCCCC-------HHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 34444333333 3489999999976543 22334555555558999999999544
No 26
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=91.48 E-value=0.062 Score=38.91 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=30.5
Q ss_pred CCcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCccccccccCCC
Q psy2097 19 INHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPS 78 (91)
Q Consensus 19 ~~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~s~~d~~~~~~ 78 (91)
.+.++|.+.|||+.+ +.....-..+..++++.-...|-|+|+++||........+..|.
T Consensus 102 ~~~~~Vin~S~G~~~-~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa 160 (282)
T PF00082_consen 102 NDGVDVINLSFGSNS-GPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPA 160 (282)
T ss_dssp HTTSSEEEECEEBEE-SSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTT
T ss_pred ccCCccccccccccc-cccccccccccccccccccccCcceeeccccccccccccccccc
Confidence 466799999999955 11110111122233443334499999999995333222244444
No 27
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=91.21 E-value=0.43 Score=34.83 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=28.0
Q ss_pred cceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCc
Q psy2097 21 HIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68 (91)
Q Consensus 21 ~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~ 68 (91)
.++|.++|||-.. .....+++.+-...|-|+||++||...
T Consensus 119 ~~~iin~S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~ 158 (255)
T cd04077 119 KPAVANMSLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQ 158 (255)
T ss_pred CCeEEEeCCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 4799999999642 223334555555559999999999543
No 28
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=90.11 E-value=0.48 Score=34.87 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=27.4
Q ss_pred ceeecCCCCCCCCCCccccChHHHHHHHHh-cCC-CCeEEEEccCCCCcccc
Q psy2097 22 IDIYSASWGPEDDGRTVDGPGPLLMVQATE-GFP-RSHLYFIEPGVTKWSIE 71 (91)
Q Consensus 22 idIYScSWGP~DdG~tvegP~~Lt~~al~~-Gr~-gGsIYVfa~GNg~~s~~ 71 (91)
++|.++|||..... +.....+++.. -++ .|-|.||++||......
T Consensus 116 ~~Vin~S~G~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~ 162 (293)
T cd04842 116 ARISSNSWGSPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGS 162 (293)
T ss_pred CEEEeccCCCCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCC
Confidence 89999999987653 11111122111 112 48899999999654433
No 29
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=89.54 E-value=0.43 Score=35.32 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=29.0
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCC
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTK 67 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~ 67 (91)
+.++|-++|||-+++ .+..+++++-.+.|-|.|+|+||..
T Consensus 92 ~g~~VIn~S~g~~~~--------~~l~~ai~~a~~~gilvv~AaGN~g 131 (239)
T cd05561 92 QGVRVVNISLAGPPN--------ALLAAAVAAAAARGMVLVAAAGNDG 131 (239)
T ss_pred CCCCEEEeCCCCCCC--------HHHHHHHHHHHHCCCEEEEecCCCC
Confidence 458999999985432 2334566666666899999999953
No 30
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=88.30 E-value=0.49 Score=35.44 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=29.9
Q ss_pred HHhccC-CCcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCC
Q psy2097 13 RALGLN-INHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVT 66 (91)
Q Consensus 13 ~ALsy~-~~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg 66 (91)
+++.|- .+.+||.++|||.++. .+ ..+ .+++.+-...|-|.|+++||.
T Consensus 90 ~a~~~a~~~~~~Vin~S~G~~~~---~~--~~~-~~~~~~~~~~gi~vV~aaGN~ 138 (255)
T cd07479 90 DAFNYAILTKIDVLNLSIGGPDF---MD--KPF-VDKVWELTANNIIMVSAIGND 138 (255)
T ss_pred HHHHhhhhcCCCEEEeeccCCCC---CC--cHH-HHHHHHHHHCCcEEEEEcCCC
Confidence 444432 2568999999997542 11 222 234444344589999999994
No 31
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=85.87 E-value=1.5 Score=33.28 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=27.3
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCc
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~ 68 (91)
+.++|.++|||.+..- .. ..+ .+++++-...|-|.||++||...
T Consensus 123 ~~~~iIn~S~g~~~~~-~~---~~~-~~~~~~~~~~gv~iv~aaGN~g~ 166 (312)
T cd07489 123 DGADVITASLGGPSGW-SE---DPW-AVVASRIVDAGVVVTIAAGNDGE 166 (312)
T ss_pred cCCCEEEeCCCcCCCC-CC---CHH-HHHHHHHHHCCCEEEEECCCCCC
Confidence 4689999999975421 11 112 22333333348899999999543
No 32
>KOG3052|consensus
Probab=84.62 E-value=0.95 Score=37.03 Aligned_cols=72 Identities=26% Similarity=0.461 Sum_probs=50.4
Q ss_pred CcHHHHHHhccCCCcceeecCCCCCCCCCCccccChHHH------------HHHHHh------------cCCCCeEEEEc
Q psy2097 7 NDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLL------------MVQATE------------GFPRSHLYFIE 62 (91)
Q Consensus 7 TD~~EA~ALsy~~~~idIYScSWGP~DdG~tvegP~~Lt------------~~al~~------------Gr~gGsIYVfa 62 (91)
--..||.|+.=.-.++| ||.|.|..+..|+.|+ .+|..| +|.||-=|||+
T Consensus 125 ~Te~EaKa~A~eiev~D------gpdd~G~~~~RPGkLsD~~P~PYpNeeAAraANnGA~PPDLS~iv~aRhgG~DYvfS 198 (311)
T KOG3052|consen 125 YTEEEAKAMAAEIEVVD------GPDDEGEMFTRPGKLSDYFPSPYPNEEAARAANNGAYPPDLSLIVKARHGGEDYVFS 198 (311)
T ss_pred ccHHHHHHhhhheeecc------CCCCCCCcccCCccccccCCCCCCCHHHHHHhcCCCCCCCchhhhhhhcCCcceeee
Confidence 34567777766666666 9999999999999993 233444 46778899997
Q ss_pred --cCC----CCccccccc-cCCCCCCccc
Q psy2097 63 --PGV----TKWSIEDRI-VNPSHRGQSL 84 (91)
Q Consensus 63 --~GN----g~~s~~d~~-~~~~~~~~~~ 84 (91)
+|- .-.++.||. .||-.-|+.+
T Consensus 199 LLTGY~epPAGv~l~~G~~fNPyFpGgaI 227 (311)
T KOG3052|consen 199 LLTGYCEPPAGVSLREGLYFNPYFPGGAI 227 (311)
T ss_pred hhhCCCCCCCCcccCCCcccCCCCCCccc
Confidence 343 235666765 5787777654
No 33
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=83.18 E-value=1.5 Score=33.20 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=28.6
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCC
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTK 67 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~ 67 (91)
+.++|.+.|||.... ........+++.+-+..|-+.|+++||..
T Consensus 172 ~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g 215 (307)
T cd04852 172 DGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSG 215 (307)
T ss_pred cCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCC
Confidence 468999999997542 11112223344445566999999999953
No 34
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=81.20 E-value=2.7 Score=31.60 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=36.1
Q ss_pred HHHHhccCC-CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCCc
Q psy2097 11 EARALGLNI-NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKW 68 (91)
Q Consensus 11 EA~ALsy~~-~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~~ 68 (91)
-++|+.|.. +.+||-++|||....- ..........+|+++-.+.|-|.|.++||..-
T Consensus 91 i~~Ai~~Ai~~gadIIn~S~g~~~~~-~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~ 148 (247)
T cd07491 91 AAKAIEAAVEKKVDIISMSWTIKKPE-DNDNDINELENAIKEALDRGILLFCSASDQGA 148 (247)
T ss_pred HHHHHHHHHHCCCcEEEeeeeccccc-ccccchHHHHHHHHHHHhCCeEEEEecCCCCC
Confidence 345555433 4589999999974321 11111334456677777779999999999543
No 35
>PTZ00262 subtilisin-like protease; Provisional
Probab=77.47 E-value=2.2 Score=37.73 Aligned_cols=41 Identities=5% Similarity=0.068 Sum_probs=29.8
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCCCeEEEEccCCCC
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTK 67 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~gGsIYVfa~GNg~ 67 (91)
+.++|-++|||... ......+|++.-+..|-|.|+|+||..
T Consensus 434 ~GA~VINmSlG~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g 474 (639)
T PTZ00262 434 REAHMINGSFSFDE-------YSGIFNESVKYLEEKGILFVVSASNCS 474 (639)
T ss_pred CCCCEEEeccccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 35799999998532 223345677777777999999999953
No 36
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=73.64 E-value=1.1 Score=26.95 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=23.9
Q ss_pred CeEEEEccCCCCccccccccCCCCCCccccc
Q psy2097 56 SHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 56 GsIYVfa~GNg~~s~~d~~~~~~~~~~~~~~ 86 (91)
|.+.++..++ .+-+..-.|.|++|||.+|+
T Consensus 16 G~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~ 45 (79)
T PF13508_consen 16 GFIRLWPNED-FAYIGYLAVDPEYRGKGIGS 45 (79)
T ss_dssp EEEEEEETTT-EEEEEEEEE-GGGTTSSHHH
T ss_pred EEEEEEEcCC-EEEEEEEEECHHHcCCCHHH
Confidence 7788887777 66777888999999999875
No 37
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=72.57 E-value=9.6 Score=28.56 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=29.1
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHh-cCCCCeEEEEccCCCCccc
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATE-GFPRSHLYFIEPGVTKWSI 70 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~-Gr~gGsIYVfa~GNg~~s~ 70 (91)
+.++|.+.|||-...-... .+..+. +++.+ -++.|-++|+++||.....
T Consensus 101 ~~~~ViN~SlG~~~~~~~~-~~~~~~-~~id~~a~~~gvlvV~aAGN~g~~~ 150 (291)
T cd04847 101 DIVRVFNLSLGSPLPIDDG-RPSSWA-AALDQLAAEYDVLFVVSAGNLGDDD 150 (291)
T ss_pred CceeEEEEecCCCCCccCC-CCCcHH-HHHHHHhccCCeEEEEECCCCCccc
Confidence 4479999999986543211 111222 22222 2344999999999955543
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=69.13 E-value=13 Score=28.29 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=28.2
Q ss_pred CCcceeecCCCCCCCCCCc---cccChHHHHHHHHhcCCC-CeEEEEccCCCC
Q psy2097 19 INHIDIYSASWGPEDDGRT---VDGPGPLLMVQATEGFPR-SHLYFIEPGVTK 67 (91)
Q Consensus 19 ~~~idIYScSWGP~DdG~t---vegP~~Lt~~al~~Gr~g-GsIYVfa~GNg~ 67 (91)
...++|-+.|||-+..... +.+...+. +++..-... |-|+||++||..
T Consensus 83 ~~gv~VINmS~G~~~~~~~~~~~~~~~~l~-~aid~~a~~~GvlvV~AAGN~g 134 (247)
T cd07488 83 GNNVKIINHSYGEGLKRDPRAVLYGYALLS-LYLDWLSRNYEVINVFSAGNQG 134 (247)
T ss_pred cCCceEEEeCCccCCCCCccccccccchHH-HHHHHHHhhCCEEEEEecCCCC
Confidence 3568999999996433211 12222332 233332223 999999999943
No 39
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=65.21 E-value=7.6 Score=29.73 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=28.5
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCC-CeEEEEccCCCC
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPR-SHLYFIEPGVTK 67 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~g-GsIYVfa~GNg~ 67 (91)
+.++|-+.|||-...-..-++ +..+|+++-.+. |-++|+++||..
T Consensus 89 ~g~~Vin~S~g~~~~~~~~~~---~~~~ai~~a~~~~GvlvVaAAGN~g 134 (275)
T cd05562 89 AGADIIVDDIGYLNEPFFQDG---PIAQAVDEVVASPGVLYFSSAGNDG 134 (275)
T ss_pred cCCCEEEecccccCCCcccCC---HHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 468999999985321111111 233556665555 999999999943
No 40
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=64.86 E-value=10 Score=30.03 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=31.2
Q ss_pred HhccCCCcceeecCCCCCCCCCCccccChHH--HHHHHHhcCCCCeEEEEccCC
Q psy2097 14 ALGLNINHIDIYSASWGPEDDGRTVDGPGPL--LMVQATEGFPRSHLYFIEPGV 65 (91)
Q Consensus 14 ALsy~~~~idIYScSWGP~DdG~tvegP~~L--t~~al~~Gr~gGsIYVfa~GN 65 (91)
++....+..+|=|+|||-...-.. +..+ ..+++++....|-..|+++||
T Consensus 112 ai~~~~~~~~VIS~S~G~~e~~~~---~~~~~~~~~~~~~a~~~GitvvaAsGd 162 (361)
T cd04056 112 AVLDNPNLPSVISISYGEPEQSLP---PAYAQRVCNLFAQAAAQGITVLAASGD 162 (361)
T ss_pred HHHcCCCCCCEEEccCCccccccC---HHHHHHHHHHHHHHHhCCeEEEEeCCC
Confidence 444444588999999997544311 2222 223455555558899999999
No 41
>KOG3396|consensus
Probab=62.32 E-value=1.9 Score=32.28 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=17.8
Q ss_pred CCccccccccCCCCCCccccc
Q psy2097 66 TKWSIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 66 g~~s~~d~~~~~~~~~~~~~~ 86 (91)
.+=-|+|-+||+.+|||.||-
T Consensus 84 ~rGhiEDVVV~~~~rgk~LGk 104 (150)
T KOG3396|consen 84 SRGHIEDVVVDSEYRGKQLGK 104 (150)
T ss_pred ccCceeEEEeChhhhhhHHhH
Confidence 344689999999999999983
No 42
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=54.88 E-value=2.7 Score=27.16 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=14.7
Q ss_pred ccccccCCCCCCccccc
Q psy2097 70 IEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 70 ~~d~~~~~~~~~~~~~~ 86 (91)
+.+-.|+|+||||.+|+
T Consensus 79 i~~l~v~p~~rg~GiG~ 95 (144)
T PRK10146 79 IQELVVMPQARGLNVGS 95 (144)
T ss_pred eheeEECHHHcCCCHHH
Confidence 66788999999999885
No 43
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=52.55 E-value=3.5 Score=24.07 Aligned_cols=17 Identities=41% Similarity=0.737 Sum_probs=13.4
Q ss_pred ccccccCCCCCCccccc
Q psy2097 70 IEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 70 ~~d~~~~~~~~~~~~~~ 86 (91)
+.+-.|.|.||||.+|+
T Consensus 28 i~~~~v~~~~r~~Gig~ 44 (83)
T PF00583_consen 28 IHRLAVDPEYRGQGIGS 44 (83)
T ss_dssp EEEEEECGGGTTSSHHH
T ss_pred EEEEEEcHHHhhCCCch
Confidence 44556899999998875
No 44
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=51.09 E-value=8.2 Score=24.57 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.0
Q ss_pred ccCCCCccccccccCCCCCCccccc
Q psy2097 62 EPGVTKWSIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 62 a~GNg~~s~~d~~~~~~~~~~~~~~ 86 (91)
.-.++.+.+.=-.|+|++|||.++.
T Consensus 17 ~~~~~~~~i~hT~V~~~~rGqGia~ 41 (78)
T PF14542_consen 17 REDGGVIVITHTEVPPELRGQGIAK 41 (78)
T ss_dssp EESSSEEEEEEEEE-CSSSTTTHHH
T ss_pred EeCCCEEEEEEEEECccccCCcHHH
Confidence 3466777788888999999998763
No 45
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=50.33 E-value=5.8 Score=21.22 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.2
Q ss_pred cccCCCCCCccccc
Q psy2097 73 RIVNPSHRGQSLGT 86 (91)
Q Consensus 73 ~~~~~~~~~~~~~~ 86 (91)
-.|.|.+|||.+|.
T Consensus 87 l~v~~~~rg~Gig~ 100 (156)
T COG0454 87 LYVLPEYRGKGIGS 100 (156)
T ss_pred EEecchhhccchHH
Confidence 68999999999873
No 46
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=48.83 E-value=14 Score=30.94 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=25.1
Q ss_pred CcceeecCCCCCCCCCCccccChHHHHHHHHhcCCC-CeEEEEccCCC
Q psy2097 20 NHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPR-SHLYFIEPGVT 66 (91)
Q Consensus 20 ~~idIYScSWGP~DdG~tvegP~~Lt~~al~~Gr~g-GsIYVfa~GNg 66 (91)
..+||-++|||-... ......+ .+++++-++. |-++|+|+||.
T Consensus 243 ~gadVIN~SlG~~~~---~~~~~~~-~~~~~~~~~~~GVlvVaAAGN~ 286 (412)
T cd04857 243 TKCDLINMSYGEATH---WPNSGRI-IELMNEAVNKHGVIFVSSAGNN 286 (412)
T ss_pred cCCCEEEecCCcCCC---CccchHH-HHHHHHHHHhCCCEEEEECCCC
Confidence 348999999995321 0000112 2333333333 89999999994
No 47
>PHA00673 acetyltransferase domain containing protein
Probab=38.73 E-value=9.2 Score=27.99 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=16.1
Q ss_pred cccccccCCCCCCccccc
Q psy2097 69 SIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 69 s~~d~~~~~~~~~~~~~~ 86 (91)
-|++=.|.|.||||.+|.
T Consensus 87 ~Ie~l~V~~~~RGqGIG~ 104 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGM 104 (154)
T ss_pred EEEEEEEChhccCCCHHH
Confidence 488889999999999885
No 48
>PRK03624 putative acetyltransferase; Provisional
Probab=37.52 E-value=12 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=18.0
Q ss_pred CeEEEEccCCCCccccccccCCCCCCccccc
Q psy2097 56 SHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 56 GsIYVfa~GNg~~s~~d~~~~~~~~~~~~~~ 86 (91)
|.+.+...+.. ..+..-.|.|+||||.+|+
T Consensus 58 G~~~~~~~~~~-~~i~~i~v~p~~rg~Gig~ 87 (140)
T PRK03624 58 GTVMGGYDGHR-GWAYYLAVHPDFRGRGIGR 87 (140)
T ss_pred EEEEeeccCCC-ceEEEEEECHHHhCCCHHH
Confidence 55544333322 2233445899999999875
No 49
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=36.64 E-value=21 Score=28.58 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=11.1
Q ss_pred CCCCeEEEEccCC
Q psy2097 53 FPRSHLYFIEPGV 65 (91)
Q Consensus 53 r~gGsIYVfa~GN 65 (91)
+|+|-||||++|-
T Consensus 36 ~n~g~i~~FG~GH 48 (243)
T COG4821 36 MNDGRIYVFGSGH 48 (243)
T ss_pred hcCCEEEEecCch
Confidence 4669999999996
No 50
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=36.60 E-value=8.4 Score=24.55 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=14.2
Q ss_pred ccccccccCCCCCCccccc
Q psy2097 68 WSIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 68 ~s~~d~~~~~~~~~~~~~~ 86 (91)
-+|-.-.+.|.||++.+|+
T Consensus 22 g~i~~v~t~p~~RrrGlg~ 40 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGS 40 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHH
T ss_pred cEEEEEEECHHHcCCCHHH
Confidence 4555667899999999886
No 51
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=35.85 E-value=7.8 Score=23.98 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.7
Q ss_pred cccccccCCCCCCccccc
Q psy2097 69 SIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 69 s~~d~~~~~~~~~~~~~~ 86 (91)
.+.+-.|.|++|||.+|+
T Consensus 56 ~i~~~~v~~~~rg~G~g~ 73 (131)
T TIGR01575 56 HILNIAVKPEYQGQGIGR 73 (131)
T ss_pred EEEEEEECHHHcCCCHHH
Confidence 456668999999998876
No 52
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=35.64 E-value=10 Score=25.06 Aligned_cols=13 Identities=62% Similarity=1.032 Sum_probs=11.3
Q ss_pred ccCCCCCCccccc
Q psy2097 74 IVNPSHRGQSLGT 86 (91)
Q Consensus 74 ~~~~~~~~~~~~~ 86 (91)
+++|++|||.+|.
T Consensus 85 ~~~~~~rg~G~g~ 97 (152)
T PF13523_consen 85 IVDPEYRGQGLGK 97 (152)
T ss_dssp ESTGGGTTSSHHH
T ss_pred eechhhcCCCHHH
Confidence 6899999998875
No 53
>PF03497 Anthrax_toxA: Anthrax toxin LF subunit; InterPro: IPR005165 Anthrax toxin is a plasmid-encoded toxin complex produced by the Gram-positive, spore-forming bacteria, Bacillus anthracis. The toxin consists of three non-toxic proteins: the protective antigen (PA), the lethal factor (LF) and the edema factor (EF) []. These component proteins self-assemble at the surface of host cell receptors, yielding a series of toxic complexes that can produce shock-like symptoms and death. Anthrax toxin is one of a large group of Bacillus and Clostridium exotoxins referred to as binary toxins, forming independent enzymatic (A moiety) and binding (B moiety) components. The LF and EF proteins are the enzymes (A moiety) that act on cytosolic substrates, while PA is a multi-functional protein (B moiety) that binds to cell surface receptors, mediates the assembly and internalisation of the complexes, and delivers them to the host cell endosome []. Once PA is attached to the host receptor [], it must then be cleaved by a host cell surface (furin family) protease before it is able to bind EF and LF. The cleavage of the N terminus of PA enables the C-terminal fragment to self-associate into a ring-shaped heptameric complex (prepore) that can bind LF or EF competitively. The PA-LF/EF complex is then internalised by endocytosis, and delivered to the endosome, where PA forms a pore in the endosomal membrane in order to translocate LF and EF to the cytosol. LF is a Zn-dependent metalloprotease that cleaves and inactivates mitogen-activated protein (MAP) kinases, kills macrophages, and causes death of the host by inhibiting cell proliferation [, ]. EF is a calcium-and calmodulin-dependent adenylyl cyclase that can cause edema (fluid-filled swelling) when associated with PA. EF is not toxic by itself, and is required for the survival of germinated Bacillus spores within macrophages at the early stages of infection. EF dramatically elevates the level of host intracellular cAMP, a ubiquitous messenger that integrates many processes of the cell; increases in cAMP can interfere with host intracellular signalling []. This entry represents a central domain in the edema factor adenylyl cyclase protein of anthrax toxin, as well as in adenylyl cylcases from other bacterial toxins.; GO: 0008294 calcium- and calmodulin-responsive adenylate cyclase activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2COL_A 1YRT_A 1YRU_A 1ZOT_A 1S26_C 1XFY_F 1XFX_C 1Y0V_A 1SK6_C 1XFW_C ....
Probab=35.12 E-value=11 Score=28.74 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=12.0
Q ss_pred CcHHHHHHhccCCCcceeecCCCCCC
Q psy2097 7 NDAVEARALGLNINHIDIYSASWGPE 32 (91)
Q Consensus 7 TD~~EA~ALsy~~~~idIYScSWGP~ 32 (91)
|++.|.-. .=+--+|.=.||+|||.
T Consensus 44 t~LI~~G~-~tKgl~vkgKSsdWGP~ 68 (179)
T PF03497_consen 44 TSLIESGY-ATKGLHVKGKSSDWGPQ 68 (179)
T ss_dssp HHHHHCT--EE--TT--S--BSSCCC
T ss_pred HHHHhcCC-CCCCcccccccCCCCCc
Confidence 44444444 55556788899999995
No 54
>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.
Probab=33.68 E-value=19 Score=23.71 Aligned_cols=8 Identities=50% Similarity=1.572 Sum_probs=7.1
Q ss_pred eecCCCCC
Q psy2097 24 IYSASWGP 31 (91)
Q Consensus 24 IYScSWGP 31 (91)
.|-++|||
T Consensus 72 MyLSCWGP 79 (79)
T PF12609_consen 72 MYLSCWGP 79 (79)
T ss_pred EEEeccCc
Confidence 68899998
No 55
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=33.63 E-value=19 Score=26.46 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=22.1
Q ss_pred CeEEEEccCCCCccccccccCCCCCCccccc
Q psy2097 56 SHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 56 GsIYVfa~GNg~~s~~d~~~~~~~~~~~~~~ 86 (91)
|.+.++-..+..--+.+-.|.|.||||.+|+
T Consensus 59 G~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~ 89 (292)
T TIGR03448 59 GYANLVPARGTDPAMAELVVHPAHRRRGIGR 89 (292)
T ss_pred EEEEEEcCCCCcceEEEEEECHhhcCCCHHH
Confidence 6666555433333477789999999999885
No 56
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=32.64 E-value=10 Score=24.04 Aligned_cols=17 Identities=47% Similarity=0.782 Sum_probs=12.7
Q ss_pred ccccccCCCCCCccccc
Q psy2097 70 IEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 70 ~~d~~~~~~~~~~~~~~ 86 (91)
+.+-.|.|.||||.+++
T Consensus 75 i~~v~v~p~~R~~Gl~~ 91 (127)
T PF13527_consen 75 IGDVAVDPEYRGRGLGR 91 (127)
T ss_dssp EEEEEE-GGGTTSSHHH
T ss_pred EEEEEECHHHcCCCHHH
Confidence 45667899999998874
No 57
>PTZ00330 acetyltransferase; Provisional
Probab=30.59 E-value=9.1 Score=24.71 Aligned_cols=18 Identities=61% Similarity=0.947 Sum_probs=15.0
Q ss_pred cccccccCCCCCCccccc
Q psy2097 69 SIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 69 s~~d~~~~~~~~~~~~~~ 86 (91)
-+.+-.|.|.+|||.+|+
T Consensus 84 ~i~~~~V~~~~rg~Gig~ 101 (147)
T PTZ00330 84 HIEDVVVDPSYRGQGLGR 101 (147)
T ss_pred EEEEEEECHHHcCCCHHH
Confidence 466678999999998875
No 58
>smart00162 SAPA Saposin/surfactant protein-B A-type DOMAIN. Present as four and three degenerate copies, respectively, in prosaposin and surfactant protein B. Single copies in acid sphingomyelinase, NK-lysin amoebapores and granulysin. Putative phospholipid membrane binding domains.
Probab=29.03 E-value=24 Score=20.37 Aligned_cols=7 Identities=43% Similarity=1.445 Sum_probs=5.6
Q ss_pred cCCCCCC
Q psy2097 26 SASWGPE 32 (91)
Q Consensus 26 ScSWGP~ 32 (91)
-|+|||.
T Consensus 4 ~CtwGPs 10 (34)
T smart00162 4 RCTWGPS 10 (34)
T ss_pred cccCCCh
Confidence 4899995
No 59
>PF13964 Kelch_6: Kelch motif
Probab=28.46 E-value=38 Score=18.88 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=9.4
Q ss_pred CeEEEEccCCC
Q psy2097 56 SHLYFIEPGVT 66 (91)
Q Consensus 56 GsIYVfa~GNg 66 (91)
+.||||++-+.
T Consensus 12 ~~iyv~GG~~~ 22 (50)
T PF13964_consen 12 GKIYVFGGYDN 22 (50)
T ss_pred CEEEEECCCCC
Confidence 78999998776
No 60
>PF14312 FG-GAP_2: FG-GAP repeat
Probab=27.31 E-value=35 Score=20.07 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=7.3
Q ss_pred cCCCCeEEEE
Q psy2097 52 GFPRSHLYFI 61 (91)
Q Consensus 52 Gr~gGsIYVf 61 (91)
|.+.|++|||
T Consensus 40 ~~~~GaaYvf 49 (49)
T PF14312_consen 40 GSDSGAAYVF 49 (49)
T ss_pred CCcCCEEEEC
Confidence 3344999998
No 61
>PRK07922 N-acetylglutamate synthase; Validated
Probab=25.34 E-value=29 Score=24.28 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=15.7
Q ss_pred CccccccccCCCCCCccccc
Q psy2097 67 KWSIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 67 ~~s~~d~~~~~~~~~~~~~~ 86 (91)
...+.+-.|.|++||+.+|+
T Consensus 70 ~~~i~~l~V~p~~rgkGiG~ 89 (169)
T PRK07922 70 LAEIRTVAVDPAARGRGVGH 89 (169)
T ss_pred ceEEEEEEECHHHhCCCHHH
Confidence 34556678999999998875
No 62
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=24.39 E-value=16 Score=23.87 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=13.9
Q ss_pred ccccccCCCCCCccccc
Q psy2097 70 IEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 70 ~~d~~~~~~~~~~~~~~ 86 (91)
+.+-.|.|++|||.+|+
T Consensus 66 ~~~i~v~~~~rg~G~g~ 82 (146)
T PRK09491 66 LFNIAVDPDYQRQGLGR 82 (146)
T ss_pred EEEEEECHHHccCCHHH
Confidence 45556999999999886
No 63
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=23.42 E-value=19 Score=22.13 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=14.6
Q ss_pred cccccccCCCCCCccccc
Q psy2097 69 SIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 69 s~~d~~~~~~~~~~~~~~ 86 (91)
.|..-.|.|.+||+.+|+
T Consensus 66 ~i~~l~v~p~~r~~Gig~ 83 (117)
T PF13673_consen 66 EISHLYVLPEYRGRGIGR 83 (117)
T ss_dssp EEEEEEE-GGGTTSSHHH
T ss_pred eEEEEEEChhhcCCcHHH
Confidence 488888999999999885
No 64
>PLN00165 hypothetical protein; Provisional
Probab=23.34 E-value=40 Score=23.10 Aligned_cols=9 Identities=44% Similarity=1.431 Sum_probs=7.5
Q ss_pred eecCCCCCC
Q psy2097 24 IYSASWGPE 32 (91)
Q Consensus 24 IYScSWGP~ 32 (91)
.|-.+|||.
T Consensus 80 MyLSCWGPN 88 (88)
T PLN00165 80 MYLSCWGPN 88 (88)
T ss_pred eEecccCCC
Confidence 688889994
No 65
>PRK09831 putative acyltransferase; Provisional
Probab=22.80 E-value=19 Score=23.93 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=14.4
Q ss_pred cccccccCCCCCCccccc
Q psy2097 69 SIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 69 s~~d~~~~~~~~~~~~~~ 86 (91)
.+..-.|.|++|||.+|+
T Consensus 74 ~i~~~~v~p~~~g~GiG~ 91 (147)
T PRK09831 74 YIDMLFVDPEYTRRGVAS 91 (147)
T ss_pred eeeeEEECHHHcCCCHHH
Confidence 455566999999999885
No 66
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=22.27 E-value=18 Score=23.54 Aligned_cols=15 Identities=7% Similarity=0.244 Sum_probs=12.5
Q ss_pred cccCCCCCCcccccc
Q psy2097 73 RIVNPSHRGQSLGTT 87 (91)
Q Consensus 73 ~~~~~~~~~~~~~~~ 87 (91)
=.|.|.+|||.+|+.
T Consensus 84 ~~v~p~~rg~Gig~~ 98 (162)
T PRK10140 84 ICVDSRWKNRGVASA 98 (162)
T ss_pred EEECHHHcCCCHHHH
Confidence 368999999999863
No 67
>PRK07757 acetyltransferase; Provisional
Probab=21.61 E-value=35 Score=22.34 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=13.7
Q ss_pred ccccccCCCCCCccccc
Q psy2097 70 IEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 70 ~~d~~~~~~~~~~~~~~ 86 (91)
+..-.|.|+|||+.+|+
T Consensus 68 i~~v~V~p~~rg~Glg~ 84 (152)
T PRK07757 68 IRSLAVSEDYRGQGIGR 84 (152)
T ss_pred EEEEEECHHHcCCCHHH
Confidence 44567899999998875
No 68
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=21.50 E-value=71 Score=16.50 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=10.3
Q ss_pred CeEEEEccCCCC
Q psy2097 56 SHLYFIEPGVTK 67 (91)
Q Consensus 56 GsIYVfa~GNg~ 67 (91)
|.|||-.++|.+
T Consensus 13 g~i~VaD~~n~r 24 (28)
T PF01436_consen 13 GNIYVADSGNHR 24 (28)
T ss_dssp SEEEEEECCCTE
T ss_pred CCEEEEECCCCE
Confidence 899999998864
No 69
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=20.88 E-value=64 Score=18.02 Aligned_cols=10 Identities=10% Similarity=0.202 Sum_probs=8.3
Q ss_pred CCeEEEEccC
Q psy2097 55 RSHLYFIEPG 64 (91)
Q Consensus 55 gGsIYVfa~G 64 (91)
++.||||++=
T Consensus 11 ~~kiyv~GG~ 20 (49)
T PF07646_consen 11 DGKIYVFGGY 20 (49)
T ss_pred CCEEEEECCc
Confidence 3889999876
No 70
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=20.70 E-value=32 Score=25.71 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.9
Q ss_pred CCccccccccCCCCCCccccc
Q psy2097 66 TKWSIEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 66 g~~s~~d~~~~~~~~~~~~~~ 86 (91)
...-|.+-.|.|++|||.+|+
T Consensus 182 ~~~eI~~i~V~P~yRG~GiG~ 202 (266)
T TIGR03827 182 GNAEMTDFATLPEYRGKGLAK 202 (266)
T ss_pred CcEEEEEEEECHHHcCCCHHH
Confidence 345577778999999999885
No 71
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=20.47 E-value=25 Score=24.10 Aligned_cols=17 Identities=29% Similarity=0.523 Sum_probs=12.9
Q ss_pred ccccccCCCCCCccccc
Q psy2097 70 IEDRIVNPSHRGQSLGT 86 (91)
Q Consensus 70 ~~d~~~~~~~~~~~~~~ 86 (91)
+..-.|.|+||||.+|+
T Consensus 69 i~~l~V~p~~rg~GiG~ 85 (157)
T TIGR02406 69 VWQVAVDPRARGKGLAR 85 (157)
T ss_pred EEEEEEChHhccCcHHH
Confidence 33444899999998875
No 72
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=20.34 E-value=22 Score=23.33 Aligned_cols=13 Identities=38% Similarity=0.854 Sum_probs=11.6
Q ss_pred ccCCCCCCccccc
Q psy2097 74 IVNPSHRGQSLGT 86 (91)
Q Consensus 74 ~~~~~~~~~~~~~ 86 (91)
.|.|.||||.+|+
T Consensus 92 ~V~~~~rg~GiG~ 104 (150)
T PLN02706 92 VVDSAARGKGLGK 104 (150)
T ss_pred EECHHHcCCCHHH
Confidence 5999999999886
No 73
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=20.34 E-value=27 Score=22.49 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.0
Q ss_pred CCCCCccccChHHHHHHHHhcC
Q psy2097 32 EDDGRTVDGPGPLLMVQATEGF 53 (91)
Q Consensus 32 ~DdG~tvegP~~Lt~~al~~Gr 53 (91)
-||||+..-|...-..+|+.|.
T Consensus 21 LdDGksy~lp~ef~~~~L~~G~ 42 (61)
T PF07076_consen 21 LDDGKSYKLPEEFDFDGLKPGM 42 (61)
T ss_pred ecCCCEEECCCcccccccCCCC
Confidence 3899999999999988888874
Done!