RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2097
(91 letters)
>gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like,
Peptidase S8 family domain in Protein convertases.
Protein convertases, whose members include furins and
kexins, are members of the peptidase S8 or Subtilase
clan of proteases. They have an Asp/His/Ser catalytic
triad that is not homologous to trypsin. Kexins are
involved in the activation of peptide hormones, growth
factors, and viral proteins. Furin cleaves cell surface
vasoactive peptides and proteins involved in
cardiovascular tissue remodeling in the TGN, at cell
surface, or in endosomes but rarely in the ER. Furin
also plays a key role in blood pressure regulation
though the activation of transforming growth factor
(TGF)-beta. High specificity is seen for cleavage after
dibasic (Lys-Arg or Arg-Arg) or multiple basic residues
in protein convertases. There is also strong sequence
conservation.
Length = 297
Score = 76.4 bits (189), Expect = 2e-18
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1 MLDGVVNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLM 46
MLDG V D VEA +LGLN ++IDIYS SWGP+DDG+TVDGPGPL
Sbjct: 118 MLDGDVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQ 163
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family
of serine proteases. They appear to have independently
and convergently evolved an Asp/Ser/His catalytic triad,
like that found in the trypsin serine proteases (see
pfam00089). Structure is an alpha/beta fold containing a
7-stranded parallel beta sheet, order 2314567.
Length = 277
Score = 30.4 bits (69), Expect = 0.081
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 6 VNDAVEARALGLNI---NHIDIYSASWGPEDD 34
D+ A A+ N I + + S GP D
Sbjct: 85 GTDSELAGAIEWAAERPNDIRVINMSLGPVDG 116
>gnl|CDD|140351 PTZ00330, PTZ00330, acetyltransferase; Provisional.
Length = 147
Score = 28.7 bits (64), Expect = 0.26
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 60 FIEPGVTKWS-----IEDRIVNPSHRGQSLG 85
F+EP T+ IED +V+PS+RGQ LG
Sbjct: 70 FVEPKFTRGGKCVGHIEDVVVDPSYRGQGLG 100
>gnl|CDD|216007 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase
functions such as Elp3-related proteins.
Length = 80
Score = 27.2 bits (61), Expect = 0.51
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 58 LYFIEPGVTKWSIEDRIVNPSHRGQSLGTT 87
L I+ IE V+P +RG+ +GT
Sbjct: 13 LSIIDEEGNVAEIEGLAVDPEYRGKGIGTA 42
>gnl|CDD|225593 COG3051, CitF, Citrate lyase, alpha subunit [Energy production and
conversion].
Length = 513
Score = 26.2 bits (58), Expect = 2.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 8 DAVEARALGLNINHIDIYSASW--GPEDDGRTVD 39
D+ A++L N NHI+I SA+ P G +VD
Sbjct: 333 DSDAAQSLARNPNHIEI-SANQYANPGSKGASVD 365
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain. The
Prosite family is restricted to DEAD/H helicases,
whereas this domain family is found in a wide variety
of helicases and helicase related proteins. It may be
that this is not an autonomously folding unit, but an
integral part of the helicase.
Length = 78
Score = 24.8 bits (55), Expect = 3.4
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 7/31 (22%)
Query: 14 ALGLNI---NHIDIYSASWGPEDD----GRT 37
G+++ N + Y W P GR
Sbjct: 44 GRGIDLPDVNLVINYDLPWNPASYIQRIGRA 74
>gnl|CDD|213333 cd05131, RasGAP_IQGAP2, Ras-GTPase Activating Domain of IQ motif
containing GTPase activating protein 2. IQGAP2 is a
member of the IQGAP family that contains a
calponin-homology (CH) domain which binds F-actin,
IQGAP-specific repeat, a single WW domain, four IQ
motifs which mediate interactions with calmodulin, and
a Ras-GTPase-activating protein (GAP)-related domain
that binds Rho family GTPases. IQGAP2 and IQGAP3 play
important roles in the regulation of the cytoskeleton
for axon outgrowth in hippocampal neurons and are
thought to stay in a common regulatory pathway. The
results of RNA interference studies indicated that
IQGAP3 partially compensates functions of IQGAP2, but
has lesser ability than IQGAP2 to promote axon
outgrowth in hippocampal neuron. Moreover, IQGAP2 is
required for the cadherin-mediated cell-to-cell
adhesion in Xenopus laevis embryos.
Length = 359
Score = 25.7 bits (56), Expect = 4.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 1 MLDGVVNDAVEARALGLNINHIDIYSA 27
+L VV + +E ++L +N N +++Y A
Sbjct: 69 LLAPVVKEIIEDKSLIINTNPVEVYKA 95
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
subunit. This model represents the biotin carboxylase
subunit found usually as a component of acetyl-CoA
carboxylase. Acetyl-CoA carboxylase is designated EC
6.4.1.2 and this component, biotin carboxylase, has its
own designation, EC 6.3.4.14. Homologous domains are
found in eukaryotic forms of acetyl-CoA carboxylase and
in a number of other carboxylases (e.g. pyruvate
carboxylase), but seed members and trusted cutoff are
selected so as to exclude these. In some systems, the
biotin carboxyl carrier protein and this protein (biotin
carboxylase) may be shared by different
carboxyltransferases. However, this model is not
intended to identify the biotin carboxylase domain of
propionyl-coA carboxylase. The model should hit the full
length of proteins, except for chloroplast transit
peptides in plants. If it hits a domain only of a longer
protein, there may be a problem with the identification
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 449
Score = 25.5 bits (56), Expect = 4.8
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 3 DGVVNDAVEARALGLNINHIDIYSASWGPEDDG-RTVDGPGPLL-MVQATEGFPRSHLYF 60
DG+V D E + I + I A+ G G R V P L+ + T + F
Sbjct: 135 DGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRA--EAKAAF 192
Query: 61 IEPGVTKWSIEDRIVNPSH 79
GV IE I NP H
Sbjct: 193 GNDGVY---IEKYIENPRH 208
>gnl|CDD|130646 TIGR01584, citF, citrate lyase, alpha subunit. This is a model of
the alpha subunit of the holoenzyme citrate lyase (EC
4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC
4.1.3.34), and acyl carrier protein subunits in a
stoichiometric relationship of 6:6:6. Citrate lyase is
an enzyme which converts citrate to oxaloacetate. In
bacteria, this reaction is involved in citrate
fermentation. The alpha subunit catalyzes the reaction
Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The
seed contains an experimentally characterized member
from Lactococcus lactis subsp. lactis. The model covers
both Gram positive and Gram negative bacteria. It is
quite robust with queries scoring either quite well or
quite poorly against the model. There are currently no
hits in between the noise cutoff and trusted cutoff
[Energy metabolism, Fermentation].
Length = 492
Score = 25.6 bits (56), Expect = 4.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 8 DAVEARALGLNINHIDIYSASW--GPEDDGRTVD 39
D A ++ LN NH +I ASW P + G V+
Sbjct: 311 DLGAAESIALNPNHQEI-DASWYANPANKGAMVN 343
>gnl|CDD|238245 cd00431, cysteine_hydrolases, Cysteine hydrolases; This family
contains amidohydrolases, like CSHase
(N-carbamoylsarcosine amidohydrolase), involved in
creatine metabolism and nicotinamidase, converting
nicotinamide to nicotinic acid and ammonia in the
pyridine nucleotide cycle. It also contains
isochorismatase, an enzyme that catalyzes the
conversion of isochorismate to 2,3-dihydroxybenzoate
and pyruvate, via the hydrolysis of the vinyl ether
bond, and other related enzymes with unknown function.
Length = 161
Score = 24.9 bits (55), Expect = 6.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 11 EARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFP 54
ARA G+ + I++ W P DD + P V+ TEG
Sbjct: 35 AARAAGIPV----IFTRDWHPPDDPEFAELLWPPHCVKGTEGAE 74
>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is
derived from glucose in two steps. This model describes
one form of gluconate kinase, belonging to the FGGY
family of carbohydrate kinases. Gluconate kinase
phosphoryates gluconate for entry into the
Entner-Douderoff pathway [Energy metabolism, Sugars].
Length = 505
Score = 25.3 bits (55), Expect = 6.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 42 GPLLMVQATEGFPRSHLY 59
PL M+QAT GF S ++
Sbjct: 400 DPLNMIQATGGFASSEVW 417
>gnl|CDD|224088 COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis)
[Amino acid transport and metabolism].
Length = 652
Score = 25.0 bits (55), Expect = 6.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 10 VEARALGLNINHIDI 24
VE R LG NI + D+
Sbjct: 291 VELRKLGANIKYFDV 305
>gnl|CDD|178308 PLN02706, PLN02706, glucosamine 6-phosphate N-acetyltransferase.
Length = 150
Score = 24.7 bits (54), Expect = 7.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 70 IEDRIVNPSHRGQSLG 85
IED +V+ + RG+ LG
Sbjct: 88 IEDVVVDSAARGKGLG 103
>gnl|CDD|217030 pfam02432, Fimbrial_K88, Fimbrial, major and minor subunit.
Fimbriae (also know as pili) are polar filaments found
on the bacterial surface, allowing colonisation of the
host. This family consists of the minor and major
fimbrial subunits.
Length = 238
Score = 24.7 bits (54), Expect = 8.2
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 37 TVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPS 78
TV P P L+ + E FP P ++ S E V S
Sbjct: 46 TVSDPAPFLLGKTVEAFPAGGEGLT-PQISFKSYEGFSVTLS 86
>gnl|CDD|182468 PRK10446, PRK10446, ribosomal protein S6 modification protein;
Provisional.
Length = 300
Score = 24.5 bits (53), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 12 ARALGLNINHIDIYSASWGP 31
AR + L++ +DI A+ GP
Sbjct: 237 ARTMALDVAGVDILRANRGP 256
>gnl|CDD|233337 TIGR01273, speA, arginine decarboxylase, biosynthetic. Two
alternative pathways can convert arginine to putrescine.
One is decarboxylation by this enzyme followed by
removal of the urea moeity by agmatinase. In the other,
the ureohydrolase (arginase) acts first, followed by
ornithine decarboxylase. This pathway leads to
spermidine biosynthesis, hence the gene symbol speA. A
distinct biodegradative form is also pyridoxal
phosphate-dependent but is not similar in sequence
[Central intermediary metabolism, Polyamine
biosynthesis].
Length = 624
Score = 24.6 bits (54), Expect = 9.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 10 VEARALGLNINHIDI 24
E R LG+ I ++D+
Sbjct: 268 CELRKLGVKITYVDV 282
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.139 0.428
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,845,602
Number of extensions: 396262
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 21
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)