RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2097
(91 letters)
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 53.9 bits (129), Expect = 3e-10
Identities = 37/57 (64%), Positives = 40/57 (70%)
Query: 1 MLDGVVNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSH 57
MLDG V DAVEAR+LGLN NHI IYSASWGPEDDG+TVDGP L G +
Sbjct: 119 MLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGR 175
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 53.6 bits (128), Expect = 4e-10
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 1 MLDGVVNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPL 44
+L G + EA +L ++ DIYS SWGP DDGR + GP L
Sbjct: 132 ILSGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDL 175
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 34.1 bits (77), Expect = 0.003
Identities = 3/39 (7%), Positives = 9/39 (23%)
Query: 3 DGVVNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGP 41
+ D + A +++ S+
Sbjct: 152 QQLQKDWLYALGDSNASRDNRVFNHSYRMSVVDPRSANS 190
>3i3g_A N-acetyltransferase; malaria, structural genomics, structural
genomics consortium, SGC,; 1.86A {Trypanosoma brucei}
PDB: 3fb3_A
Length = 161
Score = 28.5 bits (64), Expect = 0.19
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 60 FIEPGVTKWS-----IEDRIVNPSHRGQSLGT 86
I+P T+ IED +V+PS+RG LG
Sbjct: 84 MIQPKFTRGGRAVGHIEDVVVDPSYRGAGLGK 115
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 28.8 bits (65), Expect = 0.22
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 8/43 (18%)
Query: 13 RALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPR 55
L + + P G + P P+ FPR
Sbjct: 494 DILAVPADKRQFADVLASPLAGGTDLPAPQPV--------FPR 528
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics,
structural genomics consortium, SGC; HET: 16G COA; 1.80A
{Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Length = 184
Score = 28.4 bits (63), Expect = 0.25
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 60 FIEPGVTKWSIEDRIVNPSHRGQSLGT 86
FI + +ED +V+ RG+ LG
Sbjct: 109 FIHSCAKRGRVEDVVVSDECRGKQLGK 135
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic
nucleotide binding domain, evolution, PKA signaling,
transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 28.2 bits (63), Expect = 0.25
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 50 TEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLG 85
+G + Y +E G + + D VN S G S G
Sbjct: 43 KQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFG 78
>4ag7_A Glucosamine-6-phosphate N-acetyltransferase; HET: COA; 1.55A
{Caenorhabditis elegans} PDB: 4ag9_A*
Length = 165
Score = 27.9 bits (62), Expect = 0.30
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 59 YFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
FI ++ +ED +V+ R Q LG
Sbjct: 92 KFIHGAGSRGRVEDVVVDTEMRRQKLGA 119
>1i12_A Glucosamine-phosphate N-acetyltransferase; GNAT, alpha/beta; HET:
ACO; 1.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1
PDB: 1i1d_A* 1i21_A
Length = 160
Score = 27.9 bits (62), Expect = 0.30
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 59 YFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
I IED VN ++GQ LG
Sbjct: 87 KIIHELGLCGHIEDIAVNSKYQGQGLGK 114
>1u6m_A Acetyltransferase, GNAT family; structural genomics, PSI, protein
structure initiative; 2.40A {Enterococcus faecalis}
SCOP: d.108.1.1
Length = 199
Score = 28.1 bits (62), Expect = 0.35
Identities = 11/60 (18%), Positives = 22/60 (36%)
Query: 27 ASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
A P +D + +D P + + E +W ++ V+ RG +G+
Sbjct: 72 AVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDERFRGMGIGS 131
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein
struc initiative, midwest center for structural
genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Length = 150
Score = 27.8 bits (62), Expect = 0.37
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 32 EDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
++G+ V LL+V IE+ + + RG+ G
Sbjct: 57 TENGKPV-ATATLLIVP----------NLTRAARPYAFIENVVTLEARRGRGYGR 100
>2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI,
protein structure INIT midwest center for structural
genomics; 2.01A {Streptococcus pneumoniae} SCOP:
d.108.1.1
Length = 138
Score = 27.5 bits (61), Expect = 0.42
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 60 FIEPGVTKWSIEDRIVNPSHRGQSLGT 86
+ G + ++D IV PS++ Q +G+
Sbjct: 59 LVGDGFSSVFVQDLIVLPSYQRQGIGS 85
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.53
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 14/41 (34%)
Query: 11 EARALG-LNINHIDIYSASWGPEDDGRTVDGPGPLLMVQAT 50
E +AL L + +Y+ + P L ++AT
Sbjct: 18 EKQALKKLQ-ASLKLYA----DDS--------APALAIKAT 45
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for
structural genomics of infectious diseases (csgid
national institute of allergy and infectious diseases;
HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A
4e8o_A
Length = 166
Score = 27.1 bits (60), Expect = 0.74
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 9/55 (16%)
Query: 32 EDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
D + + L E + +E V P+HR + T
Sbjct: 69 YSDHQAI---AMLEASIRFEYVNGTE------TSPVGFLEGIYVLPAHRRSGVAT 114
>3t9y_A Acetyltransferase, GNAT family; PSI-biology, structural genomics,
midwest center for structu genomics, MCSG; HET: PGE;
2.00A {Staphylococcus aureus}
Length = 150
Score = 26.7 bits (59), Expect = 0.78
Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 12/55 (21%)
Query: 32 EDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
+ + + G + + F E I +++ R + G
Sbjct: 57 IKENKII---G---LSGMC------KMMFYEKNAEYMRILAFVIHSEFRKKGYGK 99
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain,
PDZ domain containing guanine nucleotide exchange
factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 26.2 bits (58), Expect = 1.1
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 36 RTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLG 85
V+ G +++ E Y I G + S D V G S G
Sbjct: 42 EVVEQAGAIILEDGQEL---DSWYVILNGTVEISHPDGKVENLFMGNSFG 88
>3fyn_A Integron gene cassette protein HFX_CASS3; integron cassette
protein, mobIle metagenome, structural genomics, PSI-2;
1.45A {Uncultured bacterium}
Length = 176
Score = 26.6 bits (59), Expect = 1.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 57 HLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
+ +E G + ++D V P+ RG+ LG
Sbjct: 90 LGFSMEYGGLRGFVDDFFVRPNARGKGLGA 119
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Length = 157
Score = 26.3 bits (58), Expect = 1.1
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 32 EDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
E++ + + + F + K I + P+ RG + T
Sbjct: 57 EENNQII-ATAAI-------AFIDFPPTYTNKTGRKGYITNMYTEPTSRGNGIAT 103
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure
initiati northeast structural genomics consortium, NESG,
transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Length = 164
Score = 26.2 bits (58), Expect = 1.3
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 7/55 (12%)
Query: 32 EDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
D+ + + ++ L I D V+ + RG +G
Sbjct: 60 VDEREKIGAY-------SVIHLVQTPLLPTMQQRKTVYISDLCVDETRRGGGIGR 107
>2ozh_A Hypothetical protein XCC2953; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; 1.40A {Xanthomonas campestris PV}
Length = 142
Score = 26.1 bits (57), Expect = 1.4
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 52 GFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLG 85
F R I T + D V P HRG+
Sbjct: 58 AFAR----VISDYATFAYLGDVFVLPEHRGRGYS 87
>2vez_A Putative glucosamine 6-phosphate acetyltransferase;
acyltransferase; HET: ACO G6P; 1.45A {Aspergillus
fumigatus} PDB: 2vxk_A*
Length = 190
Score = 26.1 bits (57), Expect = 1.5
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 60 FIEPGVTKWSIEDRIVNPSHRGQSLGT 86
FI IED V +G+ LG
Sbjct: 118 FIHSLGMVGHIEDIAVEKGQQGKKLGL 144
>1bo4_A Protein (serratia marcescens aminoglycoside-3-N-
acetyltransferase); eubacterial aminoglyco resistance,
GCN5-related N-acetyltransferase; HET: SPD COA; 2.30A
{Serratia marcescens} SCOP: d.108.1.1
Length = 168
Score = 25.9 bits (57), Expect = 1.6
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 57 HLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
L E ++ I D V+ HR Q + T
Sbjct: 95 VLPKFEQPRSEIYIYDLAVSGEHRRQGIAT 124
>2r1i_A GCN5-related N-acetyltransferase; YP_831484.1, putative
acetyltransferase, arthrobacter SP. FB acetyltransferase
(GNAT) family; HET: MSE; 1.65A {Arthrobacter SP}
Length = 172
Score = 25.9 bits (57), Expect = 2.0
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 56 SHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
S + +++ V P RG LG+
Sbjct: 86 SFRPNVWYPGPVAILDELYVRPGRRGHRLGS 116
>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp}
SCOP: d.108.1.1
Length = 159
Score = 25.5 bits (56), Expect = 2.1
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 59 YFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
+ +IE V P R + T
Sbjct: 82 GHFSNEKSMVNIELLYVEPQFRKLGIAT 109
>1vkc_A Putative acetyl transferase; structural genomics, pyrococcus
furiosus southeast collaboratory for structural
genomics, secsg; 1.89A {Pyrococcus furiosus} SCOP:
d.108.1.1
Length = 158
Score = 25.5 bits (56), Expect = 2.2
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 64 GVTKWSIEDRIVNPSHRGQSLGT 86
V I D V RG +G+
Sbjct: 88 YVKIAYIYDIEVVKWARGLGIGS 110
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac
biosynthesis, alpha/beta protein; HET: EPE; 1.50A
{Arabidopsis thaliana}
Length = 149
Score = 25.5 bits (56), Expect = 2.6
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 60 FIEPGVTKWS-----IEDRIVNPSHRGQSLGT 86
IE + IED +V+ RG+ LG
Sbjct: 71 MIEKKFLRNCGKAGHIEDVVVDSRFRGKQLGK 102
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 25.5 bits (55), Expect = 2.7
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 50 TEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLG 85
+G + Y ++ G + V G S G
Sbjct: 166 QQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFG 201
>3dsb_A Putative acetyltransferase; APC60368.2, ST genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE; 1.48A {Clostridium difficile}
Length = 157
Score = 25.2 bits (55), Expect = 2.8
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 68 WSIEDRIVNPSHRGQSLGT 86
I+ V+ +R + +
Sbjct: 85 LWIQSVYVDKEYRRKGIFN 103
>1y7r_A Hypothetical protein SA2161; structural genomics, protein
structure initiative, PSI, midwest center for
structural genomics; 1.70A {Staphylococcus aureus}
SCOP: d.108.1.1
Length = 133
Score = 25.2 bits (55), Expect = 2.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 61 IEPGVTKWSIEDRIVNPSHRGQSLGT 86
I G T + I D V S++GQ+ G+
Sbjct: 57 IGDGGTVFQIVDIAVLKSYQGQAYGS 82
>3i9s_A Integron cassette protein; oyster POND, woods HOLE,
acetyltransferase, structural genomics, PSI-2, protein
structure initiative; 2.20A {Vibrio cholerae}
Length = 183
Score = 25.1 bits (55), Expect = 3.9
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 70 IEDRIVNPSHRGQSLGT 86
++D V+ S RG+ +G
Sbjct: 106 MKDLFVSSSARGKGIGL 122
>3s6f_A Hypothetical acetyltransferase; acyl-COA N-acyltransferases,
structural genomics, joint CENT structural genomics,
JCSG; HET: MSE COA; 1.19A {Deinococcus radiodurans}
Length = 145
Score = 24.8 bits (54), Expect = 4.1
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 64 GVTKWSIEDRIVNPSHRGQSLGT 86
G+ SI V R LG+
Sbjct: 70 GILAASIPLLEVQAGWRSLGLGS 92
>3efa_A Putative acetyltransferase; structural genom 2, protein structure
initiative, midwest center for structu genomics, MCSG;
2.42A {Lactobacillus plantarum WCFS1}
Length = 147
Score = 24.6 bits (54), Expect = 4.5
Identities = 4/27 (14%), Positives = 7/27 (25%), Gaps = 2/27 (7%)
Query: 60 FIEPGVTKWSIEDRI-VNPSHRGQSLG 85
R+ ++RG G
Sbjct: 64 LEPQADHVMRFG-RVCTRKAYRGHGWG 89
>3jvn_A Acetyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.61A {Vibrio fischeri}
Length = 166
Score = 24.6 bits (54), Expect = 4.9
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 32 EDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
E D + G + S + V +I++ + +R + +
Sbjct: 62 EMDDVII---G---FITGHFCELIST---VSKLVMMATIDELYIEKEYRREGVAE 107
>1qsm_A HPA2 histone acetyltransferase; protein-acetyl coenzyme A complex;
HET: ACO; 2.40A {Saccharomyces cerevisiae} SCOP:
d.108.1.1 PDB: 1qso_A
Length = 152
Score = 24.6 bits (54), Expect = 5.3
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 64 GVTKWSIEDRIVNPSHRGQSLGT 86
K I D V+ + R + G
Sbjct: 80 FKDKIYINDLYVDENSRVKGAGG 102
>1s3z_A Aminoglycoside 6'-N-acetyltransferase; GNAT, aminoglycoside
ribostamycin; HET: COA RIO; 2.00A {Salmonella
enteritidis} SCOP: d.108.1.1 PDB: 1s5k_A* 1s60_A*
2vbq_A*
Length = 165
Score = 24.4 bits (53), Expect = 6.0
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 9/55 (16%)
Query: 32 EDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
DG + + G S + F+E V PS R + +
Sbjct: 69 MADGVAIGFADASIRHDYVNGCDSSPVVFLE---------GIFVLPSFRQRGVAK 114
>3ey5_A Acetyltransferase-like, GNAT family; structural genomics,
APC60148, GNAT famil protein structure initiative;
2.15A {Bacteroides thetaiotaomicron}
Length = 181
Score = 24.1 bits (52), Expect = 6.7
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 68 WSIEDRIVNPSHRGQSLGT 86
+ +E NP+ R G
Sbjct: 74 YYVEHFATNPALRNGGYGK 92
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold,
structural genomics, PSI, P structure initiative; 2.00A
{Bacillus halodurans} SCOP: d.108.1.1
Length = 153
Score = 24.0 bits (52), Expect = 7.0
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 32 EDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
+ V G M+Q T ++ G + +IE + + RGQ +G+
Sbjct: 61 CNGEEIV---G---MLQVTFTPYLTY-----QGSWRATIEGVRTHSAARGQGIGS 104
>2eui_A Probable acetyltransferase; dimer, structural genomics, PSI,
protein structure initiative; 2.80A {Pseudomonas
aeruginosa PAO1} SCOP: d.108.1.1
Length = 153
Score = 23.9 bits (52), Expect = 7.5
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 68 WSIEDRIVNPSHRGQSLGT 86
W + D V R Q +
Sbjct: 79 WILNDIYVAEEARRQLVAD 97
>2gan_A 182AA long hypothetical protein; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 2.10A
{Pyrococcus horikoshii} SCOP: d.108.1.1
Length = 190
Score = 24.3 bits (52), Expect = 7.9
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 32 EDDGRTVDGPGPLLMV-QATEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLGT 86
+ D R + G + +V + + + IE +V+P +G+ +G+
Sbjct: 73 QKDNRII---GTIALVYKRIKEKGIWWVPEELMNEKVGLIEFFVVDPEFQGKGIGS 125
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 23.9 bits (52), Expect = 8.7
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 50 TEGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLG 85
+G + Y I+ G + + G S G
Sbjct: 74 QQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFG 109
>1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic
resistance, coenzyme A; HET: COA; 1.80A {Enterococcus
faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A*
Length = 180
Score = 23.9 bits (51), Expect = 8.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 66 TKWSIEDRIVNPSHRGQSLGT 86
T W + +V S R +GT
Sbjct: 69 TGWELHPLVVESSRRKNQIGT 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.139 0.428
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,499,741
Number of extensions: 79767
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 52
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)