RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2097
         (91 letters)



>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 334

 Score = 32.4 bits (72), Expect = 0.004
 Identities = 35/43 (81%), Positives = 37/43 (86%)

Query: 1   MLDGVVNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGP 43
           MLDG V DAVEAR+LGLN NHI IYSASWGPEDDG+TVDGP  
Sbjct: 118 MLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPAR 160


>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 189

 Score = 30.0 bits (66), Expect = 0.026
 Identities = 13/75 (17%), Positives = 24/75 (32%)

Query: 12  ARALGLNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIE 71
            R L           A   P +D + +D P   +  +             E    +W ++
Sbjct: 56  QRILVYEHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLD 115

Query: 72  DRIVNPSHRGQSLGT 86
              V+   RG  +G+
Sbjct: 116 TISVDERFRGMGIGS 130


>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 339

 Score = 30.1 bits (66), Expect = 0.029
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 1   MLDGVVNDAVEARALGLNINHIDIYSASWGPEDDGRTVDGPGPL 44
           +L G +    EA +L   ++  DIYS SWGP DDGR + GP  L
Sbjct: 124 ILSGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDL 167


>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 102

 Score = 24.6 bits (53), Expect = 1.3
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 51 EGFPRSHLYFIEPGVTKWSIEDRIVNPSHRGQSLG 85
          E    + + +      + +I+   V+    GQ +G
Sbjct: 19 ENNALAEITYRFVDNNEINIDHTGVSDELGGQGVG 53


>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 291

 Score = 24.1 bits (52), Expect = 3.0
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 12  ARALGLNINHIDIYSASWGPEDDGRTVDGPGPL 44
            R  G+  +++ + S     +++G      G L
Sbjct: 169 IRQAGVYHSNVKVVSNFMDFDENGVLKGFKGEL 201


>d2in5a1 b.177.1.1 (A:3-200) Hypothetical lipoprotein YmcC
          {Escherichia coli [TaxId: 562]}
          Length = 198

 Score = 23.8 bits (51), Expect = 3.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 58 LYFIEPGVTKWSIEDRIVNPSHRGQSLGTTGTG 90
          L +IE   +KW  +D  +  +H G+ L T    
Sbjct: 49 LGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLN 81


>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit
          (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 22.9 bits (49), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 61 IEPGVTKWSIEDRIVNPSH 79
          + P  +KW+I  R+ N S 
Sbjct: 8  LTPYQSKWTICARVTNKSQ 26


>d1nxja_ c.8.7.1 (A:) Hypothetical protein Rv3853 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 156

 Score = 23.0 bits (49), Expect = 7.5
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 1   MLDGVVNDAVEARALGLNINHIDIYSASWGPEDDG 35
           ++ G V DA   R + + I  +            G
Sbjct: 93  IVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAG 127


>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 264

 Score = 23.0 bits (49), Expect = 8.2
 Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 7/39 (17%)

Query: 55  RSHLYFIEPGVT-----KWSIEDRIVNPSHRGQSLGTTG 88
           R+   + EP         W++    V P H     G T 
Sbjct: 214 RAKQCWTEPRAWETLQRGWNVVGLAVRPQHSM--RGHTA 250


>d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon
          Thermoplasma acidophilum [TaxId: 2303]}
          Length = 290

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 9/66 (13%)

Query: 17 LNINHIDIYSASWGPEDDGRTVDGPGPLLMVQATEGFPRSHLYFIEPGVTKWSIEDRIVN 76
            +N I IY       ++         L+ +    G P     ++            ++ 
Sbjct: 7  AKVNGIYIYYKLCKAPEEKA------KLMTMH---GGPGMSHDYLLSLRDMTKEGITVLF 57

Query: 77 PSHRGQ 82
              G 
Sbjct: 58 YDQFGC 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 358,251
Number of extensions: 14570
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 12
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)