BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy21
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UMN|A Chain A, Crystal Structure Of Lamin-B1
pdb|3UMN|B Chain B, Crystal Structure Of Lamin-B1
pdb|3UMN|C Chain C, Crystal Structure Of Lamin-B1
Length = 123
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 3/110 (2%)
Query: 72 AKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTV 131
A GN+ I E+D DGKF++L N ++Q +G W+++RK+ G+ S+K+ ++AG TV
Sbjct: 11 ATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKI-GDTSVSYKYTSRYVLKAGQTV 69
Query: 132 TVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGELANQERII 180
T+W+ N G T PP +++ KNQ +G+G+++ IL N+ GE Q +
Sbjct: 70 TIWAANA-GVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTV 118
>pdb|2KPW|A Chain A, Nmr Solution Structure Of Lamin-B1 Protein From Homo
Sapiens: Northeast Structural Genomics Consortium Mega
Target, Hr5546a (439-549)
Length = 122
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
GN+ I E+D DGKF++L N ++Q +G W+++RK+ G+ S+K+ ++AG TVT+
Sbjct: 13 GNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKI-GDTSVSYKYTSRYVLKAGQTVTI 71
Query: 134 WSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGELANQERII 180
W+ N G T PP +++ KNQ +G+G+++ IL N+ GE Q +
Sbjct: 72 WAANA-GVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTV 118
>pdb|1IVT|A Chain A, Nmr Structures Of The C-Terminal Globular Domain Of Human
Lamin AC
Length = 122
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 66 FQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKI 125
F + G + + EVD +GKFV+L NK +E+QS+GNWQ+ R+ + +++F +
Sbjct: 3 FSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTL 62
Query: 126 EAGGTVTVWSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGELANQERII 180
+AG VT+W+ GATH PP ++V K Q +G G+ + T L+N+ GE +++
Sbjct: 63 KAGQVVTIWAAGA-GATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLV 117
>pdb|1IFR|A Chain A, Structure Of Lamin AC GLOBULAR DOMAIN
Length = 121
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
G + + EVD +GKFV+L NK +E+QS+GNWQ+ R+ + +++F ++AG VT+
Sbjct: 7 GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66
Query: 134 WSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGELANQERII 180
W+ GATH PP ++V K Q +G G+ + T L+N+ GE +++
Sbjct: 67 WAAGA-GATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLV 113
>pdb|1UFG|A Chain A, Solution Structure Of Immunoglobulin Like Domain Of Mouse
Nuclear Lamin
Length = 151
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
G + + EVD +GKFV+L NK +E+QS+GNWQ+ R+ + +++F ++AG VT+
Sbjct: 38 GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTI 97
Query: 134 WSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGELANQERII 180
W+ GATH PP ++V K Q +G G + T L+N+ GE +++
Sbjct: 98 WASGA-GATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMRKLV 144
>pdb|2LLL|A Chain A, Solution Nmr Structure Of C-Terminal Globular Domain Of
Human Lamin- B2, Northeast Structural Genomics
Consortium Target Hr8546a
Length = 139
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 71 SAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGT 130
SA G++ I E+D +GKFV+L N ++QSLGNW++ R+V + ++KF + AG
Sbjct: 19 SASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQM 78
Query: 131 VTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
VTVW+ G H PP +V K Q +G+G+ T+L+N DGE
Sbjct: 79 VTVWAAGA-GVAHSPPSTLVWKGQSSWGTGESFRTVLVNADGE 120
>pdb|3GEF|A Chain A, Crystal Structure Of The R482w Mutant Of Lamin AC
pdb|3GEF|B Chain B, Crystal Structure Of The R482w Mutant Of Lamin AC
pdb|3GEF|C Chain C, Crystal Structure Of The R482w Mutant Of Lamin AC
pdb|3GEF|D Chain D, Crystal Structure Of The R482w Mutant Of Lamin AC
Length = 118
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 71 SAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGT 130
S G + + EVD +GKFV+L NK +E+QS+GNWQ+ R+ + ++ F ++AG
Sbjct: 1 STSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYWFPPKFTLKAGQV 60
Query: 131 VTVWSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGELANQERII 180
VT+W+ GATH PP ++V K Q +G G+ + T L+N+ GE +++
Sbjct: 61 VTIWAAGA-GATHSPPTDLVWKAQNTWGXGNSLRTALINSTGEEVAMRKLV 110
>pdb|3JT0|A Chain A, Crystal Structure Of The C-Terminal Fragment (426-558)
Lamin-B1 From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr5546a
pdb|3JT0|B Chain B, Crystal Structure Of The C-Terminal Fragment (426-558)
Lamin-B1 From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr5546a
Length = 144
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
GN+ I E+D DGKF++L N ++Q G W+ +RK+ G+ S+K+ ++AG TVT+
Sbjct: 26 GNVCIEEIDVDGKFIRLKNTSEQDQPXGGWEXIRKI-GDTSVSYKYTSRYVLKAGQTVTI 84
Query: 134 WSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGELANQERII 180
W+ N G T PP +++ KNQ +G+G+++ IL N+ GE Q +
Sbjct: 85 WAANA-GVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTV 131
>pdb|1GK4|A Chain A, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|B Chain B, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|C Chain C, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|D Chain D, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|E Chain E, Human Vimentin Coil 2b Fragment (Cys2)
pdb|1GK4|F Chain F, Human Vimentin Coil 2b Fragment (Cys2)
Length = 84
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 206 TEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQTEMTEQLKDYRELM 261
E++ L+ N L + +E+E+ E Q R++ EI+ ++ EM L++Y++L+
Sbjct: 1 CEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60
Query: 262 EIKINLDVEIAQYRNLMEAEESSL 285
+K+ LD+EIA YR L+E EES +
Sbjct: 61 NVKMALDIEIATYRKLLEGEESRI 84
>pdb|3TYY|A Chain A, Crystal Structure Of Human Lamin-B1 Coil 2 Segment
pdb|3TYY|B Chain B, Crystal Structure Of Human Lamin-B1 Coil 2 Segment
Length = 95
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 220 ERNKELEDQIEYEQSKFARM----EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYR 275
ER +ELED + E+ RM E E+ ++ +M +QL DY +L+++K+ LD+EI+ YR
Sbjct: 26 ERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85
Query: 276 NLMEAEESSL 285
L+E EE L
Sbjct: 86 KLLEGEEERL 95
>pdb|1X8Y|A Chain A, Human Lamin Coil 2b
Length = 86
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 223 KELEDQIEYEQSKFARMEAEIKR----LQTEMTEQLKDYRELMEIKINLDVEIAQYRNLM 278
++LED + E+ R+ AE +R ++ M +QL +Y+EL++IK+ LD+EI YR L+
Sbjct: 20 RDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79
Query: 279 EAEESSL 285
E EE L
Sbjct: 80 EGEEERL 86
>pdb|3V4W|A Chain A, Structure Of E347k Mutant Of Lamin
Length = 74
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 223 KELEDQIEYEQSKFARM----EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLM 278
++LED + E+ R+ E E+ +++ M +QL +Y+EL++IK+ LD+EI YR L+
Sbjct: 9 RDLEDSLARERDTSRRLLAEKEREMAKMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 68
Query: 279 EAEE 282
E EE
Sbjct: 69 EGEE 72
>pdb|3TNU|B Chain B, Heterocomplex Of Coil 2b Domains Of Human Intermediate
Filament Proteins, Keratin 5 (Krt5) And Keratin 14
(Krt14)
Length = 129
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 233 QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAE 281
++K A +E +++ + +M L++Y+ELM K+ LDVEIA YR L+E E
Sbjct: 81 RNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEGE 129
>pdb|3V5B|A Chain A, Structure Of Coil 2b Of Human Lamin
Length = 74
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 223 KELEDQIEYEQSKFARMEAEIKR----LQTEMTEQLKDYRELMEIKINLDVEIAQYRNLM 278
++LED + E+ R+ AE +R ++ M +QL +Y+EL++IK+ LD+EI YR L+
Sbjct: 9 RDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 68
Query: 279 EAEE 282
E EE
Sbjct: 69 EGEE 72
>pdb|3V4Q|A Chain A, Structure Of R335w Mutant Of Human Lamin
Length = 74
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 223 KELEDQIEYEQSKFARMEAEIKR----LQTEMTEQLKDYRELMEIKINLDVEIAQYRNLM 278
++LED + E+ R+ AE +R ++ M +QL +Y+EL++IK+ LD+EI YR L+
Sbjct: 9 RDLEDSLARERDTSWRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 68
Query: 279 EAEE 282
E EE
Sbjct: 69 EGEE 72
>pdb|1GK6|A Chain A, Human Vimentin Coil 2b Fragment Linked To Gcn4 Leucine
Zipper (Z2b)
pdb|1GK6|B Chain B, Human Vimentin Coil 2b Fragment Linked To Gcn4 Leucine
Zipper (Z2b)
Length = 59
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 221 RNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEA 280
R K+LED++E SK +E E+ RL+ K +L+ +K+ LD+EIA YR L+E
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLK-------KLVGDLLNVKMALDIEIATYRKLLEG 53
Query: 281 EESSLP 286
EES +
Sbjct: 54 EESRIS 59
>pdb|2XV5|A Chain A, Human Lamin A Coil 2b Fragment
pdb|2XV5|B Chain B, Human Lamin A Coil 2b Fragment
Length = 74
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 252 EQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+QL +Y+EL++IK+ LD EI YR L+E EE L
Sbjct: 30 QQLDEYQELLDIKLALDXEIHAYRKLLEGEEERL 63
>pdb|3TNU|A Chain A, Heterocomplex Of Coil 2b Domains Of Human Intermediate
Filament Proteins, Keratin 5 (Krt5) And Keratin 14
(Krt14)
Length = 131
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 233 QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAE 281
Q +E ++ +L+ EM +Q ++Y+ L+++K L+ EIA YR L+E E
Sbjct: 83 QEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLEGE 131
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 211 LRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRL 246
L +A +R +LEDQ+EY+ K AR EA KRL
Sbjct: 31 LSSAGXNFYDRRCQLEDQLEYQTLK-ARAEAGAKRL 65
>pdb|2B4L|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Glycine Betaine
pdb|2B4M|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
pdb|2B4M|B Chain B, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
pdb|3CHG|D Chain D, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|A Chain A, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|B Chain B, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
pdb|3CHG|C Chain C, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
Length = 268
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 59 EERTSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFK 118
+E S+ QV N I +DP + L +K ++ L +W L+ + + K
Sbjct: 1 DENASAAEQV------NKTIIGIDPGSGIMSLTDKAMKDYDLNDWTLISASSAAMTATLK 54
Query: 119 --FHRTLKIEAGGTVTVWSFNVEGATH--EPPHNIVMKNQKFGSGDEISTI 165
+ R I G W F+ + +P Q +GS +EI TI
Sbjct: 55 KSYDRKKPIIITGWTPHWMFSRYKLKYLDDP-------KQSYGSAEEIHTI 98
>pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|B Chain B, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|C Chain C, The Calcium-activated C-terminal Half Of Gelsolin
pdb|2FH1|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH2|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH3|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH4|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
Length = 344
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 87 FVKLYN---KGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATH 143
++ LYN G + Q + NWQ + Q EV S L E GGT V S V+G
Sbjct: 36 YIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGT-PVQSRVVQG--K 92
Query: 144 EPPH 147
EP H
Sbjct: 93 EPAH 96
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 213 AANYRLTERNKELEDQI-EYEQSKFARMEAEIKRLQTEMTEQLK 255
A YRL E+++++E+ + + SK ME + KRL+TEM L+
Sbjct: 458 AVAYRLAEQHRQIEETLAHFRLSKQTLMEVK-KRLRTEMEMGLR 500
>pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX
Length = 331
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 87 FVKLYN---KGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATH 143
++ LYN G + Q + NWQ + Q EV S L E GGT V S V+G
Sbjct: 36 YIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGT-PVQSRVVQG--K 92
Query: 144 EPPH 147
EP H
Sbjct: 93 EPAH 96
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 87 FVKLYN---KGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATH 143
++ LYN G + Q + NWQ + Q EV S L E GGT V S V+G
Sbjct: 474 YIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGT-PVQSRVVQG--K 530
Query: 144 EPPH 147
EP H
Sbjct: 531 EPAH 534
>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation
Identifies Sites Of Regulatory Calcium Ions
Length = 329
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 87 FVKLYN---KGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATH 143
++ LYN G + Q + NWQ + Q EV S L E GGT V S V+G
Sbjct: 34 YIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGT-PVQSRVVQG--K 90
Query: 144 EPPH 147
EP H
Sbjct: 91 EPAH 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,424,813
Number of Sequences: 62578
Number of extensions: 278716
Number of successful extensions: 786
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 60
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)