BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy21
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P08928|LAM0_DROME Lamin Dm0 OS=Drosophila melanogaster GN=Lam PE=1 SV=4
Length = 622
Score = 150 bits (380), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 112/151 (74%), Gaps = 5/151 (3%)
Query: 31 SSVAGTPSRGSVAPSKKRKLNILEEYESEERTSSGFQVTSSAKGNMEITEVDPDGKFVKL 90
+S TPSR + + + KRK +++E SE+ + + + V++SAKGN+EI E+DP+GKFV+L
Sbjct: 430 NSTRATPSRRTPSAAVKRKRAVVDE--SEDHSVADYYVSASAKGNVEIKEIDPEGKFVRL 487
Query: 91 YNKGSEEQSLGNWQLVRKVQGE-VKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHNI 149
+NKGSEE ++G WQL R + + T++KFHR+++IE G +TVWS + + A+HEPP ++
Sbjct: 488 FNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNGVITVWSADTK-ASHEPPSSL 546
Query: 150 VMKNQKFGSGDEISTILLNTDGE-LANQERI 179
VMK+QK+ S D TILLN++GE +AN +RI
Sbjct: 547 VMKSQKWVSADNTRTILLNSEGEAVANLDRI 577
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFAR----MEAEIKRLQT 248
EL+ T+ R + +NEL AN L R ++LE Q++ ++ + + +E E+ RL+
Sbjct: 314 ELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLRE 373
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
EMT+QLK+Y++LM+IK++LD+EIA Y L+ EE+ L
Sbjct: 374 EMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARL 410
>sp|Q03427|LAMC_DROME Lamin-C OS=Drosophila melanogaster GN=LamC PE=1 SV=2
Length = 621
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 108/166 (65%), Gaps = 15/166 (9%)
Query: 28 AGSSSVAG--TPS-RGSVAP------SKKRKLNILEEYESEERTSSGFQVTSSAKGNMEI 78
A +SS +G TPS R S P + KR+ +++E SE+RT S + V ++AKG++EI
Sbjct: 425 ASASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDE--SEDRTLSEYSVNAAAKGDLEI 482
Query: 79 TEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNV 138
E D +G+F+KL+NKG+EE +L WQL R + G+ + +FKF R K+ G +VT+WS +
Sbjct: 483 IEADVEGRFIKLHNKGTEEINLTGWQLTR-IAGDEELAFKFSRGSKVLGGASVTIWSVDA 541
Query: 139 EGATHEPPHNIVMKNQKFGSGDEISTILLNTDGE-LANQERIIDNL 183
G H+PP+N+VMK +K+ + + ++L N D E +A+ +R+ N+
Sbjct: 542 -GTAHDPPNNLVMK-KKWPVANSMRSVLANADKEDVASYDRVRANV 585
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 205 DTEMNELRAANYRLTERNKELEDQIEYEQSK----FARMEAEIKRLQTEMTEQLKDYREL 260
+ ++ L N L R +ELE+ ++ E+ + A +EAE++R++ EM QL++Y+ L
Sbjct: 318 NAKLQNLEDTNAGLNARIRELENLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGL 377
Query: 261 MEIKINLDVEIAQYRNLMEAEESSL 285
M+IK++LD+EIA Y L+ EE L
Sbjct: 378 MDIKVSLDLEIAAYDKLLCGEERRL 402
>sp|P11048|LMNA_XENLA Lamin-A OS=Xenopus laevis GN=lmna PE=2 SV=1
Length = 665
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 8/133 (6%)
Query: 41 SVAPSKKRKLNILEEYESEERTSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSL 100
S + SK+R+L EE ES SS F + G + + EVDP+GK+V+L NK +E+QSL
Sbjct: 408 SSSASKRRRL---EEGESR---SSSFTQHARTTGKVSVEEVDPEGKYVRLRNKSNEDQSL 461
Query: 101 GNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSG 159
GNWQ+ R++ E +KF L ++AG TVT+W+ GAT+ PP ++V K Q +G+G
Sbjct: 462 GNWQIKRQIGDETPIVYKFPPRLTLKAGQTVTIWASGA-GATNSPPSDLVWKAQSSWGTG 520
Query: 160 DEISTILLNTDGE 172
D I T LL + E
Sbjct: 521 DSIRTALLTSSNE 533
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 223 KELEDQIEYEQSKFARMEA----EIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLM 278
++LED E+ R+ A E+ ++ M +QL +Y+EL++IK+ LD+EI YR L+
Sbjct: 317 RDLEDAYARERDSSRRLLADKDREMAEMRARMQQQLDEYQELLDIKLALDMEINAYRKLL 376
Query: 279 EAEESSL 285
E EE L
Sbjct: 377 EGEEERL 383
>sp|P02545|LMNA_HUMAN Prelamin-A/C OS=Homo sapiens GN=LMNA PE=1 SV=1
Length = 664
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 11/147 (7%)
Query: 27 GAGSSSVAGTPSRGSVAPSKKRKLNILEEYESEERTSSGFQVTSSAKGNMEITEVDPDGK 86
G SS + T GSV +KKRKL ES E SS F + G + + EVD +GK
Sbjct: 400 GRASSHSSQTQGGGSV--TKKRKL------ESTESRSS-FSQHARTSGRVAVEEVDEEGK 450
Query: 87 FVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPP 146
FV+L NK +E+QS+GNWQ+ R+ + +++F ++AG VT+W+ GATH PP
Sbjct: 451 FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAGA-GATHSPP 509
Query: 147 HNIVMKNQK-FGSGDEISTILLNTDGE 172
++V K Q +G G+ + T L+N+ GE
Sbjct: 510 TDLVWKAQNTWGCGNSLRTALINSTGE 536
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 11/117 (9%)
Query: 180 IDNLRK--EQSSLLL-----ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE 232
+DN R+ E++S L+ EL++++ R ++++L+ + ++LED + E
Sbjct: 271 LDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARE 330
Query: 233 QSKFARMEAEIKR----LQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ R+ AE +R ++ M +QL +Y+EL++IK+ LD+EI YR L+E EE L
Sbjct: 331 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERL 387
>sp|P21619|LMNB2_MOUSE Lamin-B2 OS=Mus musculus GN=Lmnb2 PE=1 SV=2
Length = 596
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 23/142 (16%)
Query: 34 AGTPSRGSVAPSKKRKLNILEEYESEERTSSGFQVT--SSAKGNMEITEVDPDGKFVKLY 91
+G+PSR S R SSG ++ + A G + I EVDP+G+FV+L
Sbjct: 425 SGSPSRAS-------------------RVSSGSRLAQQTVATGVVNIDEVDPEGRFVRLK 465
Query: 92 NKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHNIVM 151
N ++QSLGNW++ R+V ++KF + AG TVTVW+ GATH PP +V
Sbjct: 466 NSSDKDQSLGNWRIKRQVLEGEDIAYKFTPKYVLRAGQTVTVWAAGA-GATHSPPSTLVW 524
Query: 152 KNQ-KFGSGDEISTILLNTDGE 172
K+Q +G G+ T L++ DGE
Sbjct: 525 KSQTNWGPGESFRTALVSADGE 546
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Query: 224 ELEDQIEYEQSKFARM----EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279
ELE+ + E+ KF +M E E+ ++ M +QL +Y+EL++IK+ LD+EI+ YR L+E
Sbjct: 315 ELEEALAGERDKFRKMLDAKEQEMTEVRDAMQQQLAEYQELLDIKLALDMEISAYRKLLE 374
Query: 280 AEESSL 285
EE L
Sbjct: 375 GEEERL 380
>sp|Q3ZD69|LMNA_PIG Prelamin-A/C OS=Sus scrofa GN=LMNA PE=3 SV=1
Length = 664
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 86/150 (57%), Gaps = 17/150 (11%)
Query: 27 GAGSSSVAGTPSRGSVAPSKKRKLNILEEYES---EERTSSGFQVTSSAKGNMEITEVDP 83
G SS + T S GSV +KKRKL E S RTS G + + EVD
Sbjct: 400 GRASSHSSQTQSGGSV--TKKRKLESSESRSSFSQHARTS----------GRVAVEEVDE 447
Query: 84 DGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATH 143
+GKFV+L NK +E+QS+GNWQ+ R+ + +++F ++AG VT+W+ GATH
Sbjct: 448 EGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAGA-GATH 506
Query: 144 EPPHNIVMKNQK-FGSGDEISTILLNTDGE 172
PP ++V K+Q +G G+ + T L+N+ GE
Sbjct: 507 SPPADLVWKSQNTWGCGNSLRTALINSTGE 536
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 11/117 (9%)
Query: 180 IDNLRK--EQSSLLL-----ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE 232
+DN R+ E++S L+ EL++++ R ++++L+ + ++LED + E
Sbjct: 271 LDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARE 330
Query: 233 QSKFARM----EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ R+ E E+ ++ M +QL +Y+EL++IK+ LD+EI YR L+E EE L
Sbjct: 331 RDTSRRLLADKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERL 387
>sp|P13648|LMNA_CHICK Lamin-A OS=Gallus gallus GN=LMNA PE=2 SV=1
Length = 657
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Query: 64 SGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTL 123
+ F + G + + EVD +G+FV+L NK +E+Q+LGNWQ+ R+ + +++F
Sbjct: 429 TSFSHHARTSGRVGVEEVDLEGRFVRLRNKSNEDQALGNWQVKRQNGDDPPLTYRFPPKF 488
Query: 124 KIEAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
++AG VT+W+ GATH PP ++V K Q +GSGD + T L+N++GE
Sbjct: 489 TLKAGQAVTIWASGA-GATHSPPSDVVWKAQSSWGSGDSLRTALINSNGE 537
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 193 ELKETKGRSGKYDTEMNELR----AANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQT 248
EL++T R E+++L+ A +L E + L + E + A E E+ ++
Sbjct: 290 ELQQTHIRIDSLSAELSQLQKQLAAKEAKLREVEEALSREREGGRRLLAEKEREMAEMRA 349
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
M +QL +Y+EL++IK+ LD+EI YR L+E EE L
Sbjct: 350 RMQQQLDEYQELLDIKLALDMEINAYRKLLEGEEERL 386
>sp|P14733|LMNB1_MOUSE Lamin-B1 OS=Mus musculus GN=Lmnb1 PE=1 SV=3
Length = 588
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
GN+ I E+D DGKF++L N ++Q +G W+++RK+ G+ S+K+ ++AG TVTV
Sbjct: 441 GNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKI-GDTSVSYKYTSRYVLKAGQTVTV 499
Query: 134 WSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
W+ N G T PP +++ KNQ +G+G+++ IL N+ GE
Sbjct: 500 WAANA-GVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGE 538
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM----EAEIKRLQT 248
EL E++ R ++++ L+ + ER +ELED + E+ RM E E+ ++
Sbjct: 293 ELMESRMRIESLSSQLSNLQKESRACLERIQELEDMLAKERDNSRRMLSDREREMAEIRD 352
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+M +QL DY +L+++K+ LD+EI+ YR L+E EE L
Sbjct: 353 QMQQQLSDYEQLLDVKLALDMEISAYRKLLEGEEERL 389
>sp|P20700|LMNB1_HUMAN Lamin-B1 OS=Homo sapiens GN=LMNB1 PE=1 SV=2
Length = 586
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
GN+ I E+D DGKF++L N ++Q +G W+++RK+ G+ S+K+ ++AG TVT+
Sbjct: 440 GNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKI-GDTSVSYKYTSRYVLKAGQTVTI 498
Query: 134 WSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
W+ N G T PP +++ KNQ +G+G+++ IL N+ GE
Sbjct: 499 WAANA-GVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGE 537
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM----EAEIKRLQT 248
EL E++ R ++++ L+ + ER +ELED + E+ RM E E+ ++
Sbjct: 292 ELMESRMRIESLSSQLSNLQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRD 351
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+M +QL DY +L+++K+ LD+EI+ YR L+E EE L
Sbjct: 352 QMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERL 388
>sp|P14732|LMNB2_CHICK Lamin-B2 OS=Gallus gallus GN=LMNB2 PE=2 SV=1
Length = 600
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 72/110 (65%), Gaps = 4/110 (3%)
Query: 66 FQVT--SSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTL 123
FQ++ +SA G++ I E+D +GK+V+L N ++QSLGNW+L R++ + ++KF
Sbjct: 445 FQMSQQASATGSISIEEIDLEGKYVQLKNNSEKDQSLGNWRLKRQIGDGEEIAYKFTPKY 504
Query: 124 KIEAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
+ AG TVT+W + G +H PP +V KNQ +G+G I T L+N+DGE
Sbjct: 505 VLRAGQTVTIWGADA-GVSHSPPSVLVWKNQGSWGTGGNIRTYLVNSDGE 553
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM----EAEIKRLQT 248
ELKE + R +++ L+ +R +EL++ + E+ KF +M E E+ ++
Sbjct: 285 ELKEARMRIESLSHQLSGLQKQASATEDRIRELKETMAGERDKFRKMLDAKEREMTEMRD 344
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+M QL +Y+EL+++K+ LD+EI+ YR L+E EE L
Sbjct: 345 QMQLQLTEYQELLDVKLALDMEISAYRKLLEGEEERL 381
>sp|P70615|LMNB1_RAT Lamin-B1 OS=Rattus norvegicus GN=Lmnb1 PE=1 SV=3
Length = 587
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
GN+ I E+D DGKF++L N ++Q +G W+++RK+ G+ S+K+ ++AG TVTV
Sbjct: 440 GNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKI-GDTSVSYKYTSRYVLKAGQTVTV 498
Query: 134 WSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
W+ N G T PP +++ KNQ +G+G+++ +L N+ GE
Sbjct: 499 WAANA-GVTASPPTDLIWKNQNSWGTGEDVKVVLKNSQGE 537
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 194 LKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM----EAEIKRLQTE 249
+ E++ R ++++ L+ + ER +ELED + E+ RM E E+ ++ +
Sbjct: 293 MMESRMRIESLSSQLSNLQKDSRACLERIQELEDMLAKERDNSRRMLSDKEREMAEIRDQ 352
Query: 250 MTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
M +QL DY +L+++K+ LD+EI+ YR L+E EE L
Sbjct: 353 MQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERL 388
>sp|P14731|LMNB1_CHICK Lamin-B1 OS=Gallus gallus GN=LMNB1 PE=2 SV=1
Length = 584
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
GN+ I E+D DGKF++L N ++Q +G W+++RK+ G+ S+++ ++AG TVT+
Sbjct: 439 GNISIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKI-GDTSASYRYTSRYVLKAGQTVTI 497
Query: 134 WSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
W+ N G T PP +++ KNQ +G+G+++ +L N+ GE
Sbjct: 498 WAANA-GVTASPPTDLIWKNQNSWGTGEDVKVVLKNSQGE 536
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM----EAEIKRLQT 248
EL E++ R + + +++ + +R ELED + E+ + ++ E E+ ++
Sbjct: 291 ELHESRMRIETLSSHIADIQKESRAWQDRVHELEDTLSKERENYRKILAENEREVAEMRN 350
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+M +Q DY +L+++K+ LD+EI+ YR L+E+EE L
Sbjct: 351 QMQQQFSDYEQLLDVKLALDMEISAYRKLLESEEERL 387
>sp|P48678|LMNA_MOUSE Prelamin-A/C OS=Mus musculus GN=Lmna PE=1 SV=2
Length = 665
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 69/111 (62%), Gaps = 2/111 (1%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
G + + EVD +GKFV+L NK +E+QS+GNWQ+ R+ + +++F ++AG VT+
Sbjct: 438 GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTI 497
Query: 134 WSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGELANQERIIDNL 183
W+ GATH PP ++V K Q +G G + T L+N+ GE +++ +L
Sbjct: 498 WASGA-GATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMRKLVRSL 547
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 11/117 (9%)
Query: 180 IDNLRK--EQSSLLL-----ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE 232
+DN R+ E++S L+ EL++++ R ++++L+ + ++LED + E
Sbjct: 271 LDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARE 330
Query: 233 QSKFARMEAEIKR----LQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ R+ AE +R ++ M +QL +Y+EL++IK+ LD+EI YR L+E EE L
Sbjct: 331 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERL 387
>sp|P48679|LMNA_RAT Prelamin-A/C OS=Rattus norvegicus GN=Lmna PE=1 SV=1
Length = 665
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
G + + EVD +GKFV+L NK +E+QS+GNWQ+ R+ + +++F ++AG VT+
Sbjct: 438 GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLMTYRFPPKFTLKAGQVVTI 497
Query: 134 WSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGELANQERIIDNL 183
W+ GATH PP ++V K Q +G G + T L+N GE +++ +L
Sbjct: 498 WASGA-GATHSPPTDLVWKAQNTWGCGTSLRTALINATGEEVAMRKLVRSL 547
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 68/117 (58%), Gaps = 11/117 (9%)
Query: 180 IDNLRK--EQSSLLL-----ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE 232
+DN R+ E++S L+ EL++++ R ++++L+ + ++LED + E
Sbjct: 271 LDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARE 330
Query: 233 QSKFARMEAEIKR----LQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ R+ AE +R ++ M +QL +Y+EL++IK+ LD+EI YR L+E EE L
Sbjct: 331 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERL 387
>sp|Q03252|LMNB2_HUMAN Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=3
Length = 600
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 70 SSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGG 129
+SA G++ I E+D +GKFV+L N ++QSLGNW++ R+V + ++KF + AG
Sbjct: 448 ASASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQ 507
Query: 130 TVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
VTVW+ G H PP +V K Q +G+G+ T+L+N DGE
Sbjct: 508 MVTVWAAGA-GVAHSPPSTLVWKGQSSWGTGESFRTVLVNADGE 550
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM----EAEIKRLQT 248
ELKE + R +++ L+ +R +ELE+ + E+ KF +M E E+ ++
Sbjct: 286 ELKEARMRLESLSYQLSGLQKQASAAEDRIRELEEAMAGERDKFRKMLDAKEQEMTEMRD 345
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
M +QL +Y+EL+++K+ LD+EI YR L+E EE L
Sbjct: 346 VMQQQLAEYQELLDVKLALDMEINAYRKLLEGEEERL 382
>sp|P21910|LAML2_XENLA Lamin-L(II) OS=Xenopus laevis PE=2 SV=1
Length = 623
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 70 SSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGG 129
+SA G++ I E+D +GK+V L N ++QSLGNW+L RK+ E + +KF ++AG
Sbjct: 474 ASATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWRLKRKIGEEEEIVYKFTPKYVLKAGQ 533
Query: 130 TVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
+V ++S + G H PP +V KNQ +G+G I T L+NT+ E
Sbjct: 534 SVKIYSADA-GVAHSPPSILVWKNQSSWGTGSNIRTYLVNTEEE 576
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
E E+ ++ +M +QL +Y+EL+++K+ LD+EI YR L+E EE L
Sbjct: 346 EREMAEMRDQMQQQLNEYQELLDVKLALDLEINAYRKLLEGEEERL 391
>sp|P09010|LAML1_XENLA Lamin-L(I) OS=Xenopus laevis PE=2 SV=1
Length = 583
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 69 TSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAG 128
+++A G++ I EVD DGK+++L N ++ LG W+L R + GE +FKF ++A
Sbjct: 434 SAAATGDVSIEEVDVDGKYIRLKNNSEKDHPLGGWELTRTI-GEASVNFKFTSRYVLKAE 492
Query: 129 GTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGELANQERII 180
TVT+W+ + G PP +++ KNQ +G+G+++ L N+ GE Q I
Sbjct: 493 QTVTIWAADA-GVKASPPSDLIWKNQNSWGTGEDVKATLKNSQGEEVAQRTTI 544
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 4/97 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKR----LQT 248
EL E++ R ++++EL+ + +R +ELED + E+ +M AE +R ++
Sbjct: 292 ELMESRIRIDSLTSQLSELQKESRAWHDRMQELEDMLAKEKDNSRKMLAEREREMADIRD 351
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+M +QL DY +L+++K+ LD+EI+ YR L+E EE L
Sbjct: 352 QMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERL 388
>sp|P23730|IFEA_ASCSU Intermediate filament protein A (Fragment) OS=Ascaris suum PE=1
SV=1
Length = 497
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 62 TSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKG-SEEQSLGNWQLVRKVQGEVKTSFKFH 120
T+S SAKGN+ I E PDG++V L N S+E+++G W+L RK+ G+ + +
Sbjct: 373 TASRTSFQRSAKGNVSIQETAPDGRYVVLENTHRSKEEAIGEWKLKRKIDGKREIVYTLP 432
Query: 121 RTLKIEAGGTVTVWSFNVEGATHEPPHNIVMK-NQKFGSGDEISTILLNTDGE 172
R + G +V +W+ +G H PP +V FGSG + TIL N +GE
Sbjct: 433 RDFILRPGKSVKIWARG-QGGIHSPPEQLVFDLEDTFGSGSNVQTILFNREGE 484
>sp|Q21443|LMN1_CAEEL Lamin-1 OS=Caenorhabditis elegans GN=lmn-1 PE=1 SV=2
Length = 566
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 74 GNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133
G + I EVD +GK+V++ N EEQS+G ++LV K G + SF+F +K+ + TV
Sbjct: 445 GPVGIDEVDEEGKWVRVANNSEEEQSIGGYKLVVKA-GNKEASFQFSSRMKLAPHASATV 503
Query: 134 WSFNVEGATHEPPHNIVMKNQKFGSGDEISTILLNTDGE 172
WS + GA H PP VMK Q++ GD S L +++G+
Sbjct: 504 WSADA-GAVHHPPEVYVMKKQQWPIGDNPSARLEDSEGD 541
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 233 QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
Q K +A I L E+ + ++ +L+++KI LD E+ Y+ L+E EE L
Sbjct: 335 QEKLDDKDARIAELNQEIERMMSEFHDLLDVKIQLDAELKTYQALLEGEEERL 387
>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 OS=Caenorhabditis elegans
GN=ifa-1 PE=1 SV=2
Length = 575
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 62 TSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKG-SEEQSLGNWQLVRKVQGEVKTSFKFH 120
T+S SAKGN+ I E PDGKF+ L N ++++++G W+L R++ G+ + +
Sbjct: 453 TASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRENVYTLP 512
Query: 121 RTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFGSGDEISTILLNTDGE 172
R + AG T+ +++ N +G P + FGSG+ + TIL N +GE
Sbjct: 513 RDFVLRAGKTLKIFARN-QGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGE 563
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
+ LR + S L +L + + R+ + ++ EL NY+L + DQ YE + R
Sbjct: 327 VKRLRTQLSDLRGKLADLESRNSLLEKQIQEL---NYQLED------DQRSYEAALNDR- 376
Query: 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
+++I++++ E + + + L++ K LD EIA YR ++E EE+
Sbjct: 377 DSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEEN 420
>sp|P31732|OV71_ONCVO Muscle cell intermediate filament protein OV71 (Fragment)
OS=Onchocerca volvulus GN=OV71 PE=2 SV=1
Length = 432
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 62 TSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKG-SEEQSLGNWQLVRKVQGEVKTSFKFH 120
T+S SAKGN+ I + DGKF+ L N S+E+ +G W+L RK+ G+ + + F
Sbjct: 308 TASRTSFQRSAKGNVSIQDASSDGKFILLENTHRSKEEPIGEWRLKRKIDGKREIVYTFP 367
Query: 121 RTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGE 172
R ++ G TV +W+ + PP +V + FG G + TIL N +GE
Sbjct: 368 RDFILKPGKTVKIWARG--QGVYSPPDQLVFDAEDSFGVGSNVQTILFNKEGE 418
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
+ LR + S L +L + +GR+ + +M EL NY+L + DQ YE + R
Sbjct: 182 VKRLRVQLSDLRGKLADLEGRNSLLEKQMQEL---NYQLED------DQRSYEAALNDR- 231
Query: 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
+A+I++++ E + + + L++ K LD EIA YR ++E EE+
Sbjct: 232 DAQIRKMREECQALMMELQMLLDTKQTLDAEIAIYRKMLEGEEN 275
>sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 OS=Caenorhabditis elegans
GN=ifa-4 PE=1 SV=2
Length = 577
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 62 TSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHR 121
T+S + SAKGN+ I E +P GK++ L N ++++G+W+L RK+ G+ + F F R
Sbjct: 456 TTSHSSYSRSAKGNIAIQEAEPSGKYIVLENISRRDENIGDWKLRRKIAGKREIVFTFPR 515
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMK-NQKFGSGDEISTILLNTDGE 172
+ A +V + F H PP ++V FG+G+++ T L N +GE
Sbjct: 516 EFTLRAQKSVKI--FARGQGVHSPPDSLVYDLEDSFGTGNDVVTTLYNKEGE 565
>sp|P10999|LAML3_XENLA Lamin-L(III) OS=Xenopus laevis PE=2 SV=2
Length = 583
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 10/150 (6%)
Query: 30 SSSVAGTPSRGSVAPS------KKRKLNILEEYESEERTSSGFQVTSSAKGNMEITEVDP 83
S S T SR S + + KKRKL+ E S + S +S+ G + + ++DP
Sbjct: 391 SPSQRSTVSRASTSQTSRLLRGKKRKLD--ETGRSVTKRSYKVVQQASSTGPVSVEDIDP 448
Query: 84 DGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATH 143
+G +V+L N E+ SL W + R + +FK +++ VT+W+ GA H
Sbjct: 449 EGNYVRLLNNTEEDFSLHGWVVKRMHMSLPEIAFKLPCRFILKSSQRVTIWAAGA-GAVH 507
Query: 144 EPPHNIVMKNQK-FGSGDEISTILLNTDGE 172
PP ++V K+QK +G+GD I LL++ GE
Sbjct: 508 SPPTDLVWKSQKTWGTGDNIKITLLDSTGE 537
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTE 252
E+ TK R +++N + N L + ++L+D ++ R E R TE+ +
Sbjct: 290 EIMATKLRVDTLSSQLNHYQKQNSALEAKVRDLQDMLDRAHDMHRRQMTEKDREVTEIRQ 349
Query: 253 ----QLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
QL++Y +L+++K+ LD+EI YR ++E EE L
Sbjct: 350 TLQGQLEEYEQLLDVKLALDMEINAYRKMLEGEEQRL 386
>sp|P02540|DESM_PIG Desmin OS=Sus scrofa GN=DES PE=1 SV=4
Length = 471
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKF----ARMEAEIKRLQT 248
E+ E + + Y E++ L+ N L + +ELED+ E S + AR+E EI+ L+
Sbjct: 321 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKD 380
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLP 286
EM L++Y++L+ +K+ LDVEIA YR L+E EES +LP
Sbjct: 381 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP 420
>sp|O62654|DESM_BOVIN Desmin OS=Bos taurus GN=DES PE=2 SV=3
Length = 470
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E + + Y E++ L+ N L + +ELED+ E Q AR+E EI+ L+
Sbjct: 320 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKD 379
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLP 286
EM L++Y++L+ +K+ LDVEIA YR L+E EES +LP
Sbjct: 380 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP 419
>sp|P48675|DESM_RAT Desmin OS=Rattus norvegicus GN=Des PE=1 SV=2
Length = 469
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E + + Y E++ L+ N L + +ELED+ E Q AR+E EI+ L+
Sbjct: 319 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKD 378
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLP 286
EM L++Y++L+ +K+ LDVEIA YR L+E EES +LP
Sbjct: 379 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP 418
>sp|P02541|DESM_MESAU Desmin OS=Mesocricetus auratus GN=DES PE=2 SV=2
Length = 469
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E + + Y E++ L+ N L + +ELED+ E Q AR+E EI+ L+
Sbjct: 319 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKD 378
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLP 286
EM L++Y++L+ +K+ LDVEIA YR L+E EES +LP
Sbjct: 379 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP 418
>sp|P31001|DESM_MOUSE Desmin OS=Mus musculus GN=Des PE=1 SV=3
Length = 469
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E + + Y E++ L+ N L + +ELED+ E Q AR+E EI+ L+
Sbjct: 319 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEANGYQDNIARLEEEIRHLKD 378
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLP 286
EM L++Y++L+ +K+ LDVEIA YR L+E EES +LP
Sbjct: 379 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP 418
>sp|P17661|DESM_HUMAN Desmin OS=Homo sapiens GN=DES PE=1 SV=3
Length = 470
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E + + Y E++ L+ N L + +ELED+ E Q AR+E EI+ L+
Sbjct: 320 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKD 379
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLP 286
EM L++Y++L+ +K+ LDVEIA YR L+E EES +LP
Sbjct: 380 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP 419
>sp|Q5XFN2|DESM_CANFA Desmin OS=Canis familiaris GN=DES PE=3 SV=3
Length = 469
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E + + Y E++ L+ N L + +E+ED+ E Q AR+E EI+ L+
Sbjct: 319 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMREMEDRFASEASGYQDNIARLEEEIRHLKD 378
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLP 286
EM L++Y++L+ +K+ LDVEIA YR L+E EES +LP
Sbjct: 379 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLP 418
>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 OS=Caenorhabditis elegans
GN=ifa-3 PE=1 SV=1
Length = 581
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 71 SAKGNMEITEVDPDGKFVKLYNKGSE-EQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGG 129
SAKGN+ I EV P+GKFV L N + E+ LG+W+L RK+ G+ + F F +
Sbjct: 464 SAKGNVSIKEVSPEGKFVILENTHRDKEEPLGDWKLKRKIDGKREIVFTFPSDYILHPVQ 523
Query: 130 TVTVWSFNVEGATHEPPHNIVMK-NQKFGSGDEISTILLNTDGE 172
TV +++ PP +V + + FG+G + TIL N GE
Sbjct: 524 TVKIFARG--NGVANPPEVLVFEGDDTFGAGANVQTILYNNSGE 565
>sp|Q8N9Z9|ILFT1_HUMAN Intermediate filament tail domain-containing protein 1 OS=Homo
sapiens GN=IFLTD1 PE=2 SV=2
Length = 388
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 67 QVTSSAKGNMEITEVDPDGKFVKLYNKG-SEEQSLGNWQLVRKVQGEVKTSFKFHRTLKI 125
Q TSS+ G++EI EV+ G FVKL N +E ++G+ L + V G+ + ++F + +
Sbjct: 139 QFTSSSLGDVEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVM 198
Query: 126 EAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
+A TVTVW+ E A H+PP + + K Q KF + + TIL +G+
Sbjct: 199 QANSTVTVWAAASE-AKHQPPSDFLWKEQDKFRASPDCITILCKPNGQ 245
>sp|P41219|PERI_HUMAN Peripherin OS=Homo sapiens GN=PRPH PE=1 SV=2
Length = 470
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E++ + E++ LR N L + +ELE+Q E Q+ AR+E E+++L+
Sbjct: 311 EMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKE 370
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLPTY 288
EM L++Y+EL+ +K+ LD+EIA YR L+E EES S+P +
Sbjct: 371 EMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVH 412
>sp|A6QQJ3|PERI_BOVIN Peripherin OS=Bos taurus GN=PRPH PE=2 SV=1
Length = 469
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E++ + E++ LR N L + +ELE+Q E Q+ AR+E E+++L+
Sbjct: 310 EMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKE 369
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLPTY 288
EM L++Y+EL+ +K+ LD+EIA YR L+E EES S+P +
Sbjct: 370 EMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVH 411
>sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 OS=Caenorhabditis elegans
GN=ifb-1 PE=1 SV=1
Length = 589
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 62 TSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKG-SEEQSLGNWQLVRKVQGEVKTSFKFH 120
T + FQ SAKGN+ I+E DP+GKF+KL N ++++++G ++ RK+ G + +
Sbjct: 466 TKTTFQ--RSAKGNVTISECDPNGKFIKLENSHRNKDENVGEHKIRRKLDGRREIVYSIP 523
Query: 121 RTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGE 172
+ I+ G +T+++ + +G + PP ++V + +G G + T L+N DGE
Sbjct: 524 ANVVIKPGKNLTIYARD-QGGINNPPESLVFDGENTWGIGANVVTSLVNKDGE 575
Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 210 ELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDV 269
E++ NY+LT+ DQ +YE + R +A ++R++ E + + + L++ K LD
Sbjct: 365 EVQNLNYQLTD------DQRQYEAALNDR-DATLRRMREECQTLVAELQALLDTKQMLDA 417
Query: 270 EIAQYRNLMEAEESSL 285
EIA YR ++E EE+ +
Sbjct: 418 EIAIYRKMLEGEETRV 433
>sp|P21807|PERI_RAT Peripherin OS=Rattus norvegicus GN=Prph PE=1 SV=1
Length = 468
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E++ + E++ LR N L + +ELE+Q E Q+ AR+E E+++L+
Sbjct: 308 EMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKE 367
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLPTY 288
EM L++Y+EL+ +K+ LD+EIA YR L+E EES S+P +
Sbjct: 368 EMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVH 409
>sp|Q17107|AV71_ACAVI Muscle cell intermediate filament protein AV71 (Fragment)
OS=Acanthocheilonema viteae GN=AV71 PE=2 SV=1
Length = 394
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 62 TSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKG-SEEQSLGNWQLVRKVQGEVKTSFKFH 120
T+S SAKGN+ I + DGK++ N S+E+ +G W+L RK+ G+ + + F
Sbjct: 270 TASRTSFQRSAKGNVSIQDAASDGKYILSENTHRSKEEPIGEWRLKRKIDGKREIVYTFP 329
Query: 121 RTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
++ G +V +W+ + PP +V + FG G + TIL N +GE
Sbjct: 330 TNFVLKPGKSVKIWARG--QGVYSPPDQLVFDAEDSFGIGSNVQTILFNKEGE 380
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
+ LR + S L +L + +GR+ + + EL NY+L + DQ YE + R
Sbjct: 144 VKRLRVQLSELRGKLADLEGRNSLLEKQTQEL---NYQLED------DQRSYEAALNDR- 193
Query: 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
+A+I++++ E + + + L++ K LD EIA YR ++E EE+
Sbjct: 194 DAQIRKMREECQALMMELQMLLDTKQTLDAEIAIYRKMLEGEEN 237
>sp|P15331|PERI_MOUSE Peripherin OS=Mus musculus GN=Prph PE=1 SV=2
Length = 475
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E++ + E++ LR N L + +ELE+Q E Q+ AR+E E+++L+
Sbjct: 315 EMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKE 374
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLPTY 288
EM L++Y+EL+ +K+ LD+EIA YR L+E EES S+P +
Sbjct: 375 EMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVH 416
>sp|Q4R899|ILFT1_MACFA Intermediate filament tail domain-containing protein 1 OS=Macaca
fascicularis GN=IFLTD1 PE=2 SV=1
Length = 404
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 67 QVTSSAKGNMEITEVDPDGKFVKLYNKG-SEEQSLGNWQLVRKVQGEVKTSFKFHRTLKI 125
Q T+S+ G++EI EV+ G FVKL N +E ++G+ L + V G+ + ++F + +
Sbjct: 150 QFTASSLGDIEIAEVNVKGLFVKLINSSLDKEMAIGDHILQQNVNGQTISLYRFLPNIVM 209
Query: 126 EAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
+A TVTVW+ E A H+PP + + K Q KF + + TIL +G+
Sbjct: 210 QASSTVTVWAAASE-AKHQPPSDFLWKEQDKFRTSPDCITILCKPNGQ 256
>sp|P23731|IFEB_ASCSU Intermediate filament protein B OS=Ascaris suum PE=1 SV=1
Length = 589
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 62 TSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKG-SEEQSLGNWQLVRKVQGEVKTSFKFH 120
T + FQ SAKGN+ I+E DP+GKF+ L N S++++LG +L RK+ + +
Sbjct: 466 TKTTFQ--RSAKGNVTISECDPNGKFITLENTHRSKDENLGEHRLKRKLDNRREIVYTIP 523
Query: 121 RTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGE 172
++AG T+ +++ + +G H PP +V + +G G + T L+N DG+
Sbjct: 524 PNTVLKAGRTMKIYARD-QGGIHNPPDTLVFDGENTWGIGANVVTSLINKDGD 575
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 210 ELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDV 269
E++ NY+L + DQ +YE + R +A ++R++ E + + + L++ K LD
Sbjct: 365 EVQNLNYQLND------DQRQYEAALNDR-DATLRRMREECQTLVAELQALLDTKQMLDA 417
Query: 270 EIAQYRNLMEAEESSL 285
EIA YR ++E EES +
Sbjct: 418 EIAIYRKMLEGEESRV 433
>sp|Q9D4C1|ILFT1_MOUSE Intermediate filament tail domain-containing protein 1 OS=Mus
musculus GN=Ifltd1 PE=2 SV=1
Length = 413
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 67 QVTSSAKGNMEITEVDPDGKFVKLYNKGSE-EQSLGNWQLVRKVQGEVKTSFKFHRTLKI 125
Q TSS+ G ++I EV+ G FV+L N +E E +GN L + V G + ++F + +
Sbjct: 172 QFTSSSLGEIKIAEVNIKGLFVRLVNSSNEKEVEIGNHILQQNVNGHAVSLYQFPDNITL 231
Query: 126 EAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE 172
+A TVTVW+ E A +PP + V + Q KF S + +TIL +GE
Sbjct: 232 QANSTVTVWAAASE-AKPQPPTDFVWEEQSKFRSSPDCTTILCKPNGE 278
>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 OS=Caenorhabditis elegans
GN=ifa-2 PE=1 SV=1
Length = 581
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 71 SAKGNMEITEVDPDGKFVKLYNKG-SEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGG 129
SAKGN+ I E P+GKFV L N ++E+ LG+W+L RK+ G+ + F F +
Sbjct: 464 SAKGNVAIKETSPEGKFVILENTHRAKEEPLGDWKLKRKIDGKREIVFTFPSDYILHPFQ 523
Query: 130 TVTVWSFNVEGATHEPPHNIVMKNQKFGSGDEISTILLNTDGE 172
+V +++ +G + P I ++ FG G + TIL N GE
Sbjct: 524 SVKIFARG-QGIANPPEVLIFEGDETFGVGANVQTILYNNKGE 565
>sp|P02542|DESM_CHICK Desmin OS=Gallus gallus GN=DES PE=1 SV=1
Length = 463
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 10/114 (8%)
Query: 181 DNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKF 236
D LR+ + +L E + + Y E++ L+ N L + +E+E++ E Q
Sbjct: 303 DALRQAKQEML----EYRHQIQSYTCEIDALKGTNDSLMRQMREMEERFAGEAGGYQDTI 358
Query: 237 ARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLPTY 288
AR+E EI+ L+ EM L++Y++L+ +K+ LDVEIA YR L+E EE+ S+P +
Sbjct: 359 ARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEENRISIPMH 412
>sp|Q19286|IFB2_CAEEL Intermediate filament protein ifb-2 OS=Caenorhabditis elegans
GN=ifb-2 PE=1 SV=1
Length = 543
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 59 EERTSSGFQVTSSAKGNMEITEVDPDGKFVKLYN-KGSEEQSLGNWQLVRKVQGEVKTSF 117
E +T S F+ AKGN+ I E DP GK++ L N GS + + N+++ R + G F
Sbjct: 417 EVQTRSSFK--RHAKGNVSIVECDPQGKYIILENTSGSVAEDVSNFEIRRVIDGVQAFVF 474
Query: 118 KFHRTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDG 171
+ L I+ G + ++ N G + PP +IVM++ +G G ++ T L N+ G
Sbjct: 475 RLPSHLVIQQHGHLKIYGRN-SGGINSPPDSIVMESHPSWGQGGQVETFLYNSHG 528
>sp|P24789|VIM1_XENLA Vimentin-1/2 OS=Xenopus laevis GN=vim1 PE=2 SV=1
Length = 458
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 24/115 (20%)
Query: 182 NLRKEQSSLLLELKETKGRSGKYDTEMNELR------AANYRLTERNKELEDQIEYEQSK 235
+ R++ +L E+ KG + Y+ +M E+ AANY Q
Sbjct: 311 DFRRQIQTLTCEIDAMKGSNESYERQMREMEENFAIEAANY----------------QDT 354
Query: 236 FARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLPTY 288
R++ EI+ ++ EM L++Y++L+ +K+ LD+EIA YR L+E EES SLP +
Sbjct: 355 IQRLQEEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPVH 409
>sp|P08776|K2C8_XENLA Keratin, type II cytoskeletal 8 OS=Xenopus laevis PE=2 SV=1
Length = 502
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 4/99 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E + + +E++ L+A L + E E++ E ++K A +EA +++ +
Sbjct: 314 EISELTRYTTRLQSEIDALKAQRANLEAQIAEAEERGELALKDARNKLAELEAALQKAKQ 373
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLPT 287
+M+ QL+DY+ELM +K+ LD+EIA YR L+E EES L +
Sbjct: 374 DMSRQLRDYQELMNVKLALDIEIATYRKLLEGEESRLES 412
>sp|P23239|DESM_XENLA Desmin OS=Xenopus laevis GN=des PE=2 SV=1
Length = 458
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 6/100 (6%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E + + Y E++ L+ N L + ++LE++ E Q R+E EI+ ++
Sbjct: 308 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRDLEEKFSGEAAGYQDTIGRLEEEIRNMKD 367
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES--SLP 286
EM L++Y++L+ +K+ LD+EIA YR L+E EES +LP
Sbjct: 368 EMARHLREYQDLLNVKMALDMEIATYRKLLEGEESRITLP 407
>sp|Q92155|VIME_CYPCA Vimentin OS=Cyprinus carpio GN=vim PE=2 SV=1
Length = 455
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 206 TEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQTEMTEQLKDYRELM 261
++ L+ N L + +E+ED E Q AR+E +I+ ++ EM L++Y++L+
Sbjct: 319 CDLEALKGTNESLERQLREMEDNFSMEASGYQDTIARLEDDIRNMKDEMARHLREYQDLL 378
Query: 262 EIKINLDVEIAQYRNLMEAEESSLPT 287
+K+ LD+EIA YR L+E EES + T
Sbjct: 379 NVKMALDIEIATYRKLLEGEESRITT 404
>sp|P23729|IF3T_TORCA Type III intermediate filament OS=Torpedo californica PE=2 SV=1
Length = 458
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 17/214 (7%)
Query: 91 YNKGSEEQSLGNWQLVRKV---QGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPH 147
+ + ++ L L RKV Q E+ K H IE + F VE P
Sbjct: 200 FRQDVDDACLARLDLERKVETLQEEIMFLKKLHEEEIIELQAQIRDSQFKVEMDVVRPDL 259
Query: 148 NIVMKNQKFGSGDEISTILLNTDGELANQE--RIIDNLRKEQSSLLL---ELKETKGRSG 202
+++ + D++++ + EL + I D+ + +L L E E + +
Sbjct: 260 TAALQDVR-SQFDKLASKNIAETEELYKSKLADITDSASRNNDALRLAKQENNEYRRQVQ 318
Query: 203 KYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQTEMTEQLKDYR 258
E++ L+ N L + +++ED+ E Q + +E EI L+ EMT L++Y+
Sbjct: 319 SLTCEIDALKGTNESLERQMQDVEDRYNMETTNAQDTISHLEDEISHLKDEMTRHLQEYQ 378
Query: 259 ELMEIKINLDVEIAQYRNLMEAEES----SLPTY 288
EL+ +K+ LDVEIA YR L+E EE+ LP++
Sbjct: 379 ELLTVKMALDVEIATYRKLLEGEENRISMPLPSF 412
>sp|P05786|K2C8_BOVIN Keratin, type II cytoskeletal 8 OS=Bos taurus GN=KRT8 PE=2 SV=3
Length = 478
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 233 QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
Q+K A +EA ++ + +M QL++Y+ELM +K+ LDVEIA YR L+E EES L
Sbjct: 357 QAKLAELEAALRNAKQDMARQLREYQELMNVKLALDVEIATYRKLLEGEESRL 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,944,046
Number of Sequences: 539616
Number of extensions: 4290461
Number of successful extensions: 19913
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 661
Number of HSP's that attempted gapping in prelim test: 16952
Number of HSP's gapped (non-prelim): 3404
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)