Query psy21
Match_columns 288
No_of_seqs 310 out of 1434
Neff 6.6
Searched_HMMs 29240
Date Sat Aug 17 00:14:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy21.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/21hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ufg_A Lamin A, nuclear lamin; 100.0 1.2E-40 4.2E-45 279.9 10.6 128 42-176 12-141 (151)
2 3hn9_A Lamin-B1; structural ge 100.0 1.4E-39 4.8E-44 265.6 9.8 113 63-177 2-116 (123)
3 3jt0_A Lamin-B1; structural ge 100.0 1.8E-39 6.1E-44 271.0 9.6 119 61-181 13-133 (144)
4 2lll_A Lamin-B2; immunoglobuli 100.0 5.9E-39 2E-43 266.4 10.5 114 63-177 11-126 (139)
5 1ifr_A Lamin A/C; immunoglobul 100.0 1.6E-37 5.6E-42 252.6 9.4 108 69-177 2-111 (121)
6 3tnu_A Keratin, type I cytoske 99.9 2.9E-23 9.8E-28 171.0 10.1 108 172-281 2-131 (131)
7 3tnu_B Keratin, type II cytosk 99.9 5.1E-23 1.7E-27 169.1 11.4 93 189-281 33-129 (129)
8 1gk4_A Vimentin; intermediate 99.9 4.2E-22 1.4E-26 152.0 10.7 80 206-285 1-84 (84)
9 1x8y_A Lamin A/C; structural p 99.9 6.1E-22 2.1E-26 151.7 7.1 81 205-285 2-86 (86)
10 3mov_A Lamin-B1; LMNB1, B-type 99.8 5E-21 1.7E-25 149.0 7.0 84 202-285 8-95 (95)
11 1gk6_A Vimentin; intermediate 99.8 6E-20 2.1E-24 130.9 5.8 58 229-286 2-59 (59)
12 2xv5_A Lamin-A/C; structural p 99.8 5.2E-19 1.8E-23 131.3 7.7 62 226-287 4-65 (74)
13 2xv5_A Lamin-A/C; structural p 99.0 5.2E-11 1.8E-15 88.2 -0.1 31 1-31 41-71 (74)
14 1gk6_A Vimentin; intermediate 98.6 4.4E-09 1.5E-13 74.6 0.4 24 1-24 36-59 (59)
15 3trt_A Vimentin; cytoskeleton, 97.7 5.2E-05 1.8E-09 55.9 6.0 65 160-226 8-76 (77)
16 3tnu_B Keratin, type II cytosk 95.7 0.13 4.4E-06 41.3 11.0 105 173-279 1-110 (129)
17 3ghg_A Fibrinogen alpha chain; 95.5 0.017 5.9E-07 56.3 5.8 74 184-257 84-161 (562)
18 3tnu_A Keratin, type I cytoske 95.3 0.12 4.3E-06 41.5 9.7 79 184-262 44-129 (131)
19 2fxo_A Myosin heavy chain, car 94.3 1.5 5.1E-05 34.9 13.7 81 204-284 46-126 (129)
20 3cvf_A Homer-3, homer protein 93.4 0.77 2.6E-05 33.8 9.4 62 200-261 7-68 (79)
21 3cve_A Homer protein homolog 1 93.0 0.79 2.7E-05 33.2 8.7 59 203-261 4-62 (72)
22 3o0z_A RHO-associated protein 92.5 3.9 0.00013 34.2 13.6 43 230-272 93-135 (168)
23 3u1c_A Tropomyosin alpha-1 cha 90.8 3.6 0.00012 31.4 10.9 63 190-252 28-90 (101)
24 3hnw_A Uncharacterized protein 89.8 2.6 9E-05 34.1 9.8 61 190-250 73-133 (138)
25 3hnw_A Uncharacterized protein 89.7 1.9 6.6E-05 34.9 8.9 64 208-271 70-133 (138)
26 3a7p_A Autophagy protein 16; c 89.6 2.6 8.7E-05 34.7 9.5 60 204-263 73-132 (152)
27 3u1c_A Tropomyosin alpha-1 cha 89.3 5.5 0.00019 30.3 10.8 70 206-275 23-92 (101)
28 3ol1_A Vimentin; structural ge 88.7 3.1 0.0001 32.7 9.2 46 206-251 27-79 (119)
29 3swk_A Vimentin; cytoskeleton, 88.6 1.3 4.5E-05 32.9 6.6 27 204-230 5-31 (86)
30 2jee_A YIIU; FTSZ, septum, coi 88.2 4.9 0.00017 29.6 9.4 35 195-229 16-50 (81)
31 3swk_A Vimentin; cytoskeleton, 87.9 3 0.0001 30.9 8.3 39 240-278 20-58 (86)
32 1i84_S Smooth muscle myosin he 87.8 1.8 6.2E-05 46.5 9.6 42 235-276 921-962 (1184)
33 3u59_A Tropomyosin beta chain; 87.7 7.5 0.00026 29.4 10.9 63 190-252 28-90 (101)
34 3ol1_A Vimentin; structural ge 86.6 9.9 0.00034 29.7 11.1 21 237-257 86-106 (119)
35 3mq7_A Bone marrow stromal ant 86.6 7.5 0.00026 30.5 10.0 57 205-261 45-105 (121)
36 1x8y_A Lamin A/C; structural p 86.2 6.7 0.00023 29.0 9.3 21 243-263 61-81 (86)
37 3ghg_A Fibrinogen alpha chain; 85.9 11 0.00036 37.0 12.8 36 224-259 114-149 (562)
38 2lw1_A ABC transporter ATP-bin 85.3 3.9 0.00013 30.3 7.7 56 205-260 21-82 (89)
39 1l8d_A DNA double-strand break 85.2 7.9 0.00027 29.4 9.7 27 232-258 76-102 (112)
40 2v71_A Nuclear distribution pr 84.6 18 0.0006 30.8 14.2 16 258-273 140-155 (189)
41 3qh9_A Liprin-beta-2; coiled-c 84.1 7.1 0.00024 28.7 8.3 47 204-250 31-77 (81)
42 2zqm_A Prefoldin beta subunit 84.0 10 0.00035 28.8 9.9 33 229-261 79-111 (117)
43 3oja_B Anopheles plasmodium-re 83.8 5.5 0.00019 38.7 10.2 9 190-198 482-490 (597)
44 1gk4_A Vimentin; intermediate 83.7 11 0.00037 27.6 9.7 21 243-263 59-79 (84)
45 3cvf_A Homer-3, homer protein 83.7 3.4 0.00012 30.4 6.4 9 243-251 64-72 (79)
46 2jee_A YIIU; FTSZ, septum, coi 83.2 12 0.0004 27.6 9.3 44 193-236 28-71 (81)
47 1ic2_A Tropomyosin alpha chain 82.5 9 0.00031 27.8 8.5 46 191-236 26-71 (81)
48 2wt7_B Transcription factor MA 82.1 8.8 0.0003 28.8 8.4 38 223-260 51-88 (90)
49 3viq_B Mating-type switching p 81.7 4.1 0.00014 30.3 6.3 66 210-277 5-70 (85)
50 3na7_A HP0958; flagellar bioge 81.4 27 0.00092 30.5 14.0 22 232-253 130-151 (256)
51 2dfs_A Myosin-5A; myosin-V, in 79.8 13 0.00046 39.5 12.0 51 201-251 986-1040(1080)
52 1a93_B MAX protein, coiled coi 79.8 1 3.6E-05 27.7 2.1 26 200-225 8-33 (34)
53 1ic2_A Tropomyosin alpha chain 79.6 15 0.00052 26.5 9.2 32 221-252 35-66 (81)
54 3efg_A Protein SLYX homolog; x 79.4 3.8 0.00013 29.9 5.5 41 210-250 11-51 (78)
55 3u59_A Tropomyosin beta chain; 79.4 18 0.00061 27.3 10.8 59 217-275 34-92 (101)
56 3he5_B Synzip2; heterodimeric 79.4 5.4 0.00018 25.8 5.5 39 205-243 9-47 (52)
57 3m91_A Proteasome-associated A 79.4 8.8 0.0003 25.7 6.8 41 206-246 9-49 (51)
58 1fxk_A Prefoldin; archaeal pro 79.1 14 0.00046 27.7 8.9 22 231-252 76-97 (107)
59 1wt6_A Myotonin-protein kinase 78.9 4.8 0.00017 29.6 5.8 22 206-227 31-52 (81)
60 3s4r_A Vimentin; alpha-helix, 78.6 16 0.00054 27.4 8.9 14 240-253 55-68 (93)
61 3qh9_A Liprin-beta-2; coiled-c 78.0 11 0.00038 27.6 7.5 53 190-242 24-76 (81)
62 2v71_A Nuclear distribution pr 77.5 32 0.0011 29.2 13.3 23 204-226 47-69 (189)
63 1go4_E MAD1 (mitotic arrest de 77.2 13 0.00043 28.5 8.0 30 193-222 13-42 (100)
64 3i00_A HIP-I, huntingtin-inter 77.2 11 0.00039 29.6 8.0 18 230-247 43-60 (120)
65 2efr_A General control protein 75.2 33 0.0011 28.2 13.5 32 246-277 124-155 (155)
66 1deq_A Fibrinogen (alpha chain 74.7 32 0.0011 32.3 11.5 18 155-172 43-64 (390)
67 3a7p_A Autophagy protein 16; c 74.4 34 0.0012 28.0 10.4 61 186-246 69-129 (152)
68 3efg_A Protein SLYX homolog; x 74.3 7.1 0.00024 28.4 5.7 49 203-251 11-59 (78)
69 3i00_A HIP-I, huntingtin-inter 74.2 30 0.001 27.2 10.2 16 236-251 42-57 (120)
70 1go4_E MAD1 (mitotic arrest de 74.2 14 0.00047 28.3 7.5 33 199-231 12-44 (100)
71 2v4h_A NF-kappa-B essential mo 73.5 27 0.00093 27.0 9.1 10 214-223 63-72 (110)
72 3nmd_A CGMP dependent protein 72.4 4.6 0.00016 29.1 4.2 17 185-201 26-42 (72)
73 1wt6_A Myotonin-protein kinase 72.2 25 0.00087 25.7 8.1 42 190-231 29-70 (81)
74 3mov_A Lamin-B1; LMNB1, B-type 71.5 17 0.00059 27.3 7.5 21 243-263 70-90 (95)
75 4emc_A Monopolin complex subun 71.3 26 0.00089 29.7 9.2 37 207-243 21-57 (190)
76 3s9g_A Protein hexim1; cyclin 70.4 33 0.0011 26.1 10.6 76 183-258 11-89 (104)
77 3vkg_A Dynein heavy chain, cyt 69.8 24 0.00083 41.9 11.5 51 225-275 2019-2069(3245)
78 3mq7_A Bone marrow stromal ant 68.8 40 0.0014 26.4 10.9 33 219-251 70-102 (121)
79 1ci6_A Transcription factor AT 68.6 15 0.00052 25.4 6.2 20 201-220 32-51 (63)
80 3o0z_A RHO-associated protein 68.4 50 0.0017 27.4 13.2 10 266-275 151-160 (168)
81 4emc_A Monopolin complex subun 66.9 22 0.00074 30.2 7.8 26 239-264 60-85 (190)
82 3iv1_A Tumor susceptibility ge 66.8 30 0.001 25.2 7.6 11 205-215 24-34 (78)
83 3nrf_A APAG protein; structura 66.5 12 0.00041 28.8 5.7 46 88-133 33-82 (106)
84 3ndz_E Endoglucanase D; cellot 65.7 21 0.00072 27.3 7.1 22 88-111 21-42 (107)
85 3he5_B Synzip2; heterodimeric 65.0 25 0.00086 22.7 6.1 38 211-248 8-45 (52)
86 3vp9_A General transcriptional 64.7 25 0.00086 26.4 7.0 13 239-251 73-85 (92)
87 3u0c_A Invasin IPAB, 62 kDa an 64.3 62 0.0021 27.0 11.8 21 254-274 179-199 (201)
88 2yy0_A C-MYC-binding protein; 63.2 4.4 0.00015 27.4 2.3 17 208-224 28-44 (53)
89 3cl3_D NF-kappa-B essential mo 61.9 36 0.0012 27.1 7.7 50 214-263 56-105 (130)
90 1lwu_C Fibrinogen gamma chain; 61.3 14 0.00048 34.0 6.2 40 207-246 13-52 (323)
91 3cve_A Homer protein homolog 1 61.1 42 0.0014 24.0 8.8 9 243-251 58-66 (72)
92 3trt_A Vimentin; cytoskeleton, 60.8 41 0.0014 23.7 9.3 42 206-247 35-76 (77)
93 1t2k_D Cyclic-AMP-dependent tr 60.4 22 0.00075 24.2 5.7 22 205-226 28-49 (61)
94 1m1j_C Fibrinogen gamma chain; 60.3 66 0.0022 30.4 10.8 16 185-200 48-63 (409)
95 1pl5_A Regulatory protein SIR4 59.6 55 0.0019 25.3 8.2 15 260-274 128-142 (142)
96 3lay_A Zinc resistance-associa 59.4 55 0.0019 27.3 9.0 25 233-257 112-136 (175)
97 3mq9_A Bone marrow stromal ant 58.4 1E+02 0.0035 28.7 12.0 50 204-253 402-462 (471)
98 2v66_B Nuclear distribution pr 58.3 62 0.0021 25.0 10.3 42 189-230 24-66 (111)
99 4etp_A Kinesin-like protein KA 58.0 31 0.0011 32.4 8.2 33 204-236 8-40 (403)
100 1nyh_A Regulatory protein SIR4 57.2 63 0.0022 25.5 8.4 15 260-274 152-166 (166)
101 2eqb_B RAB guanine nucleotide 57.2 60 0.0021 24.5 8.5 27 186-212 6-32 (97)
102 2v4h_A NF-kappa-B essential mo 56.9 66 0.0022 24.9 10.3 15 206-220 45-59 (110)
103 3q0x_A Centriole protein; cent 56.8 29 0.00099 30.3 7.1 38 213-250 178-215 (228)
104 2efr_A General control protein 56.6 80 0.0028 25.8 12.7 47 211-257 75-121 (155)
105 1wlq_A Geminin; coiled-coil; 2 56.5 40 0.0014 24.8 6.7 41 173-219 25-65 (83)
106 4dnd_A Syntaxin-10, SYN10; str 56.4 31 0.0011 27.3 6.7 18 210-227 71-88 (130)
107 4h22_A Leucine-rich repeat fli 56.0 60 0.002 24.8 7.8 51 200-250 31-81 (103)
108 2xzr_A Immunoglobulin-binding 55.5 65 0.0022 24.4 11.2 51 228-278 56-106 (114)
109 2pnv_A Small conductance calci 54.8 20 0.00068 23.1 4.3 24 210-233 13-36 (43)
110 4etp_A Kinesin-like protein KA 54.7 26 0.0009 32.9 7.0 38 207-244 4-41 (403)
111 2w83_C C-JUN-amino-terminal ki 54.7 58 0.002 23.5 7.8 41 204-244 35-75 (77)
112 1msp_A MSP, major sperm protei 54.0 16 0.00056 28.5 4.7 42 86-134 29-71 (126)
113 2q6q_A Spindle POLE BODY compo 53.9 36 0.0012 24.1 5.8 52 185-243 10-61 (74)
114 2zqm_A Prefoldin beta subunit 53.2 69 0.0023 24.0 9.7 38 188-225 9-46 (117)
115 1nkp_B MAX protein, MYC proto- 51.8 12 0.00041 27.1 3.3 14 185-198 15-28 (83)
116 3cfu_A Uncharacterized lipopro 51.5 15 0.0005 30.1 4.1 72 88-161 53-134 (159)
117 3iv1_A Tumor susceptibility ge 50.5 69 0.0024 23.2 7.7 54 184-237 17-70 (78)
118 1uii_A Geminin; human, DNA rep 50.4 49 0.0017 24.3 6.3 36 185-220 39-74 (83)
119 4b6x_A AVRRPS4, avirulence pro 50.4 63 0.0022 23.6 6.8 19 235-253 56-74 (90)
120 3bas_A Myosin heavy chain, str 50.3 72 0.0025 23.3 10.3 43 186-228 15-57 (89)
121 1lwu_C Fibrinogen gamma chain; 50.1 54 0.0019 30.0 8.1 33 214-246 13-45 (323)
122 2ys4_A Hydrocephalus-inducing 50.0 29 0.001 26.4 5.5 42 86-135 45-86 (122)
123 3he5_A Synzip1; heterodimeric 49.8 47 0.0016 21.1 7.2 17 233-249 30-46 (49)
124 3tul_A Cell invasion protein S 49.7 85 0.0029 25.5 8.2 42 182-223 45-93 (158)
125 2yy0_A C-MYC-binding protein; 49.6 24 0.00081 23.7 4.2 30 205-234 18-47 (53)
126 3bas_A Myosin heavy chain, str 49.0 76 0.0026 23.2 10.8 22 208-229 44-65 (89)
127 1zhc_A Hypothetical protein HP 48.9 63 0.0021 23.0 6.7 54 205-259 16-69 (76)
128 2ve7_A Kinetochore protein HEC 48.8 38 0.0013 30.8 6.8 33 200-232 179-211 (315)
129 1exg_A EXO-1,4-beta-D-glycanas 48.7 48 0.0016 25.2 6.5 22 88-111 25-46 (110)
130 3m9b_A Proteasome-associated A 48.0 26 0.00088 31.1 5.3 40 207-246 55-94 (251)
131 1fxk_A Prefoldin; archaeal pro 48.0 80 0.0027 23.2 8.9 33 190-222 6-38 (107)
132 2wvr_A Geminin; DNA replicatio 47.6 68 0.0023 27.4 7.7 42 173-220 102-143 (209)
133 4gkw_A Spindle assembly abnorm 47.5 1.1E+02 0.0037 24.5 11.8 35 236-270 114-148 (167)
134 2fxo_A Myosin heavy chain, car 46.8 1E+02 0.0034 24.0 11.9 18 214-231 77-94 (129)
135 3kmh_A D-lyxose isomerase; cup 46.5 23 0.00078 31.3 4.7 44 87-134 140-185 (246)
136 2gyq_A YCFI, putative structur 46.4 21 0.00073 29.6 4.4 12 268-279 117-128 (173)
137 1hjb_A Ccaat/enhancer binding 46.2 35 0.0012 25.3 5.1 29 205-233 42-70 (87)
138 1l8d_A DNA double-strand break 46.0 90 0.0031 23.2 10.6 32 194-225 12-43 (112)
139 1t3j_A Mitofusin 1; coiled coi 45.9 79 0.0027 23.8 7.1 35 186-220 33-68 (96)
140 1wle_A Seryl-tRNA synthetase; 45.8 98 0.0033 30.0 9.6 25 228-252 124-148 (501)
141 2lw1_A ABC transporter ATP-bin 45.7 83 0.0029 22.8 7.2 20 204-223 27-46 (89)
142 3t98_B Nucleoporin NUP58/NUP45 45.5 82 0.0028 23.5 7.1 38 224-261 48-85 (93)
143 1m1j_C Fibrinogen gamma chain; 45.5 1.7E+02 0.0058 27.6 11.0 26 190-215 39-64 (409)
144 3oja_A Leucine-rich immune mol 45.2 54 0.0018 30.9 7.6 37 239-275 426-462 (487)
145 3htk_A Structural maintenance 44.9 66 0.0023 21.3 8.3 29 223-251 22-50 (60)
146 3oja_A Leucine-rich immune mol 44.0 2E+02 0.0069 26.8 12.9 35 233-267 448-482 (487)
147 3u06_A Protein claret segregat 44.0 47 0.0016 31.3 6.9 29 204-232 8-36 (412)
148 1nkp_A C-MYC, MYC proto-oncoge 43.9 31 0.0011 25.3 4.6 29 173-201 7-35 (88)
149 3lay_A Zinc resistance-associa 43.3 98 0.0034 25.7 8.0 28 228-255 114-141 (175)
150 2w83_C C-JUN-amino-terminal ki 42.2 95 0.0032 22.4 7.2 20 206-225 51-70 (77)
151 3qne_A Seryl-tRNA synthetase, 41.7 98 0.0033 29.9 8.9 62 191-252 32-103 (485)
152 4gkw_A Spindle assembly abnorm 41.4 1.4E+02 0.0046 24.0 9.0 72 173-244 13-84 (167)
153 2k6w_A Putative uncharacterize 41.3 46 0.0016 25.9 5.4 81 84-172 16-109 (120)
154 3ra3_B P2F; coiled coil domain 41.0 34 0.0012 19.4 3.2 7 267-273 19-25 (28)
155 1zxa_A CGMP-dependent protein 40.9 41 0.0014 23.7 4.5 24 220-243 25-48 (67)
156 1a93_B MAX protein, coiled coi 40.1 48 0.0016 20.3 4.0 10 215-224 9-18 (34)
157 2dq0_A Seryl-tRNA synthetase; 39.3 1.1E+02 0.0039 29.0 8.9 62 191-252 30-101 (455)
158 1fxk_C Protein (prefoldin); ar 38.9 1.3E+02 0.0045 23.1 11.2 33 229-261 97-129 (133)
159 2zxx_A Geminin; coiled-coil, c 38.4 1.1E+02 0.0038 22.2 6.7 42 173-220 21-62 (79)
160 2cri_A Vesicle-associated memb 38.2 35 0.0012 27.3 4.3 42 86-134 35-77 (147)
161 3he4_A Synzip6; heterodimeric 38.1 82 0.0028 20.5 5.6 35 207-241 18-52 (56)
162 1wle_A Seryl-tRNA synthetase; 37.4 1.8E+02 0.0061 28.1 10.0 35 191-225 69-103 (501)
163 3he5_A Synzip1; heterodimeric 37.2 79 0.0027 20.1 5.7 15 265-279 34-48 (49)
164 1fzc_C Fibrin; blood coagulati 36.7 32 0.0011 31.5 4.3 33 192-224 4-36 (319)
165 2lf0_A Uncharacterized protein 36.7 58 0.002 25.5 5.1 60 204-263 8-73 (123)
166 1m1j_A Fibrinogen alpha subuni 36.5 2.6E+02 0.0088 26.9 10.5 17 155-171 41-61 (491)
167 2l5g_B Putative uncharacterize 36.4 83 0.0028 20.1 5.0 31 211-241 7-37 (42)
168 3m91_A Proteasome-associated A 36.3 93 0.0032 20.6 7.0 33 204-236 14-46 (51)
169 1x79_B RAB GTPase binding effe 36.2 1.5E+02 0.0051 22.9 10.0 28 204-231 43-70 (112)
170 3m9b_A Proteasome-associated A 35.8 38 0.0013 29.9 4.5 39 222-260 56-94 (251)
171 3c9i_A Tail needle protein GP2 35.6 1.8E+02 0.006 25.0 8.4 51 200-250 85-135 (242)
172 3u06_A Protein claret segregat 35.5 1.3E+02 0.0045 28.2 8.6 33 210-242 7-39 (412)
173 1gu4_A CAAT/enhancer binding p 35.1 46 0.0016 24.1 4.1 29 204-232 41-69 (78)
174 3azd_A Short alpha-tropomyosin 34.9 14 0.00049 22.9 1.1 31 206-236 4-34 (37)
175 3iox_A AGI/II, PA; alpha helix 34.9 3.2E+02 0.011 26.4 12.6 68 205-279 33-104 (497)
176 1wic_A Hypothetical protein ri 34.3 48 0.0016 26.7 4.6 42 86-134 39-81 (152)
177 3q8t_A Beclin-1; autophagy, AT 34.3 1.4E+02 0.0048 22.1 12.4 7 240-246 45-51 (96)
178 3gp4_A Transcriptional regulat 33.1 1.8E+02 0.006 22.8 8.5 7 191-197 62-68 (142)
179 1m1j_A Fibrinogen alpha subuni 32.8 3.4E+02 0.012 26.1 13.1 50 224-280 115-164 (491)
180 3m0d_C TNF receptor-associated 32.8 1.2E+02 0.0041 20.8 6.4 35 211-245 25-59 (65)
181 3uux_B Mitochondrial division 32.6 2.5E+02 0.0087 24.5 9.4 48 204-251 175-222 (242)
182 2w6a_A ARF GTPase-activating p 32.1 1.2E+02 0.0042 20.8 6.3 21 205-225 26-46 (63)
183 1f5n_A Interferon-induced guan 32.0 1.7E+02 0.0057 28.9 9.0 63 206-268 487-557 (592)
184 2v66_B Nuclear distribution pr 31.9 1.7E+02 0.006 22.5 13.3 30 191-220 41-70 (111)
185 1fzc_C Fibrin; blood coagulati 31.8 23 0.00078 32.5 2.5 33 211-243 9-41 (319)
186 2gs4_A Protein YCIF; stress pr 31.5 32 0.0011 28.4 3.1 12 268-279 111-122 (166)
187 1nlw_A MAD protein, MAX dimeri 31.2 46 0.0016 24.0 3.6 14 185-198 14-27 (80)
188 3swf_A CGMP-gated cation chann 30.8 1.5E+02 0.005 21.3 7.3 11 209-219 10-20 (74)
189 3c3f_A Alpha/beta peptide with 30.6 63 0.0022 19.6 3.5 23 257-279 10-32 (34)
190 1row_A SSP-19, MSP-domain prot 30.2 77 0.0026 24.1 4.9 42 86-134 19-61 (109)
191 2dgc_A Protein (GCN4); basic d 30.0 43 0.0015 23.1 3.1 13 207-219 38-50 (63)
192 1ses_A Seryl-tRNA synthetase; 29.8 1.3E+02 0.0044 28.3 7.5 61 192-252 28-96 (421)
193 2xus_A Breast cancer metastasi 29.5 1.2E+02 0.0042 19.9 5.8 17 232-248 30-46 (49)
194 3ogh_B Protein YCIE; iron-bind 29.4 27 0.00092 29.1 2.3 11 269-279 109-119 (171)
195 2wnw_A Activated by transcript 29.2 2.2E+02 0.0074 26.8 9.0 24 76-99 394-418 (447)
196 2b9c_A Striated-muscle alpha t 28.8 2.2E+02 0.0077 22.7 9.0 53 198-250 65-117 (147)
197 2ve7_C Kinetochore protein NUF 28.8 39 0.0013 29.7 3.4 37 193-229 142-178 (250)
198 1jcd_A Major outer membrane li 27.8 1.4E+02 0.0047 19.9 6.7 14 207-220 12-25 (52)
199 3c3g_A Alpha/beta peptide with 27.7 77 0.0026 19.1 3.5 23 257-279 9-31 (33)
200 1m1s_A WR4; structural genomic 27.7 91 0.0031 24.1 5.0 42 86-134 27-69 (116)
201 2wt7_B Transcription factor MA 27.6 79 0.0027 23.5 4.4 20 205-224 54-73 (90)
202 4ani_A Protein GRPE; chaperone 27.6 2.6E+02 0.0089 23.9 8.4 37 193-229 60-96 (213)
203 2wq1_A General control protein 27.5 81 0.0028 19.0 3.5 23 257-279 9-31 (33)
204 1ik9_A DNA repair protein XRCC 27.3 2.9E+02 0.0098 23.5 8.6 32 196-227 143-174 (213)
205 3ter_A Mammalian stromal inter 27.2 2.4E+02 0.0081 22.5 9.5 76 155-230 28-114 (136)
206 3icg_A Endoglucanase D; cellul 27.2 1.3E+02 0.0044 28.7 7.1 61 88-150 401-478 (515)
207 4dk0_A Putative MACA; alpha-ha 26.8 1.4E+02 0.0049 26.5 7.0 11 126-136 28-38 (369)
208 1x9l_A CUI-DR1885; copper bind 26.7 49 0.0017 26.8 3.4 80 84-171 45-133 (149)
209 3a5t_A Transcription factor MA 26.4 3.4 0.00011 32.1 -3.5 39 223-261 61-99 (107)
210 3plt_A Sphingolipid long chain 26.2 3.2E+02 0.011 23.7 12.9 24 203-226 101-124 (234)
211 1c7s_A Beta-N-acetylhexosamini 26.1 83 0.0028 32.6 5.7 47 87-134 43-106 (858)
212 3swf_A CGMP-gated cation chann 26.0 1.8E+02 0.0062 20.8 7.7 15 225-239 12-26 (74)
213 4e61_A Protein BIM1; EB1-like 26.0 2.2E+02 0.0076 21.7 9.5 30 191-220 10-39 (106)
214 3gwk_C SAG1039, putative uncha 25.9 1.8E+02 0.0061 20.6 9.7 32 228-259 56-87 (98)
215 3aon_A V-type sodium ATPase su 25.4 3.1E+02 0.01 23.2 9.1 21 207-227 152-172 (217)
216 1z9l_A Vesicle-associated memb 25.2 82 0.0028 24.2 4.4 43 86-134 31-73 (128)
217 1uo4_A General control protein 25.2 63 0.0022 19.7 2.8 23 257-279 10-32 (34)
218 1nkp_B MAX protein, MYC proto- 25.1 1.2E+02 0.004 21.6 4.9 13 206-218 61-73 (83)
219 1xao_A YDJ1, mitochondrial pro 25.0 64 0.0022 24.8 3.7 55 99-154 20-75 (121)
220 3rrk_A V-type ATPase 116 kDa s 25.0 1.8E+02 0.0062 26.0 7.4 11 211-221 231-241 (357)
221 2yko_A LINE-1 ORF1P; RNA-bindi 25.0 1.3E+02 0.0044 26.3 5.9 20 210-229 3-22 (233)
222 2xnx_M M protein, M1-BC1; cell 24.9 98 0.0033 25.1 4.8 93 183-275 38-142 (146)
223 2w6a_A ARF GTPase-activating p 24.9 1.7E+02 0.0058 20.1 6.4 7 233-239 47-53 (63)
224 2xzr_A Immunoglobulin-binding 24.8 2.3E+02 0.0077 21.4 10.7 46 205-250 61-106 (114)
225 3me0_B PAPG protein; immunoglo 24.7 1.6E+02 0.0055 23.3 5.9 60 64-136 35-104 (128)
226 1cii_A Colicin IA; bacteriocin 24.2 4.9E+02 0.017 25.1 12.4 31 3-33 122-152 (602)
227 3oa7_A Head morphogenesis prot 24.1 86 0.0029 26.7 4.5 74 186-261 24-99 (206)
228 3lss_A Seryl-tRNA synthetase; 24.0 2.8E+02 0.0097 26.6 8.8 22 201-222 46-67 (484)
229 2cwr_A Chitinase; chitin-bindi 23.8 1.5E+02 0.0053 22.2 5.6 19 88-111 27-45 (103)
230 3m48_A General control protein 23.5 65 0.0022 19.5 2.6 23 257-279 9-31 (33)
231 2x3c_A Toxic extracellular end 23.4 41 0.0014 30.9 2.6 62 64-134 40-106 (343)
232 3swy_A Cyclic nucleotide-gated 23.3 1.6E+02 0.0054 19.1 7.2 11 229-239 14-24 (46)
233 3c9i_A Tail needle protein GP2 22.5 3.7E+02 0.013 23.1 9.6 21 209-229 80-100 (242)
234 2e7s_A RAB guanine nucleotide 22.4 1.9E+02 0.0065 23.0 6.0 71 201-271 3-76 (135)
235 3rmi_A Chorismate mutase prote 22.4 2E+02 0.0069 21.8 6.1 21 207-227 13-33 (114)
236 3ni0_A Bone marrow stromal ant 22.1 2.5E+02 0.0086 21.0 9.0 46 204-249 37-82 (99)
237 3fpp_A Macrolide-specific effl 22.1 2.5E+02 0.0085 24.6 7.6 10 126-135 27-36 (341)
238 2z5i_A TM, general control pro 22.0 1.8E+02 0.006 19.2 5.9 15 215-229 14-28 (52)
239 2i1j_A Moesin; FERM, coiled-co 21.8 4.6E+02 0.016 25.5 10.0 15 72-86 211-225 (575)
240 2r39_A FIXG-related protein; s 21.7 1.4E+02 0.0047 22.5 5.0 44 84-132 33-76 (118)
241 2dq3_A Seryl-tRNA synthetase; 21.4 1.2E+02 0.0042 28.4 5.6 62 192-253 30-101 (425)
242 1cii_A Colicin IA; bacteriocin 21.4 5.6E+02 0.019 24.8 13.1 37 187-223 358-394 (602)
243 3lss_A Seryl-tRNA synthetase; 21.2 4E+02 0.014 25.6 9.2 30 190-219 42-71 (484)
244 3ghg_C Fibrinogen gamma chain; 21.1 4.6E+02 0.016 24.7 9.3 13 157-169 20-32 (411)
245 1d7m_A Cortexillin I; coiled-c 21.1 2.6E+02 0.0089 20.8 11.2 21 208-228 34-54 (101)
246 1lwu_B Fibrinogen beta chain; 21.0 1.7E+02 0.0058 26.6 6.2 8 234-241 42-49 (323)
247 2pms_C Pneumococcal surface pr 20.7 2.1E+02 0.0071 22.5 5.8 20 204-223 66-85 (125)
248 4dyl_A Tyrosine-protein kinase 20.7 4.9E+02 0.017 23.8 10.7 30 186-215 310-339 (406)
249 3pp5_A BRK1, protein brick1; t 20.6 1E+02 0.0035 22.0 3.6 27 204-230 43-69 (73)
250 2jqo_A Hypothetical protein YO 20.4 49 0.0017 25.5 2.0 24 125-150 71-94 (108)
251 3qbt_B Inositol polyphosphate 20.4 1.5E+02 0.0052 23.2 5.1 46 85-134 46-95 (140)
252 2l0d_A Cell surface protein; s 20.3 2.7E+02 0.0093 21.2 6.4 42 87-133 24-65 (114)
253 3zbh_A ESXA; unknown function, 20.2 2.3E+02 0.0078 19.8 9.7 31 229-259 58-88 (99)
254 2yo3_A General control protein 20.2 1.9E+02 0.0066 25.7 6.2 43 206-248 216-258 (268)
No 1
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.1.16.1
Probab=100.00 E-value=1.2e-40 Score=279.86 Aligned_cols=128 Identities=36% Similarity=0.668 Sum_probs=116.4
Q ss_pred cCCcccchhhhhhcccccccccceeEEeeCCCCCeEEEeecCCCcEEEEEeCCccceeccCeEEEEEeCCcccEEEEecC
Q psy21 42 VAPSKKRKLNILEEYESEERTSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHR 121 (288)
Q Consensus 42 ~~~~~kr~r~~~~~~~s~~~~~~~~~~~~sa~G~v~I~e~d~~GkfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~ 121 (288)
+++++||||++.++ ...+++.+++|+|+|+|.|||++|+||+|+|+++++++|+||+|+|.+++..+++|+||+
T Consensus 12 ~~~~~kr~r~~~~~------~~~~~~~sa~a~G~V~I~E~d~~GefV~L~N~s~~~~~L~GW~L~r~vdg~~~~~y~Fp~ 85 (151)
T 1ufg_A 12 GGSVTKKRKLESSE------SRSSFSQHARTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPP 85 (151)
T ss_dssp CCCCCSSSSCCCCC------CCCCSCCEEEECSSEEEEEECTTSSEEEEEECSSSCEECSSCEEEEEETTSCCEEEECCT
T ss_pred cccccceeeecccc------cceeEEEecccCCCEEEEEECCCCCEEEEEECCCCccccCCCEEEEecCCCccEEEEECC
Confidence 46778999987643 224566777778999999999999999999999999999999999999987789999999
Q ss_pred CeEecCCcEEEEEecccCCCCCCCCCceeeecc-cccCccchhhheeccchh-HHHH
Q psy21 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE-LANQ 176 (288)
Q Consensus 122 ~~~L~~g~~vtIwa~~~~~~~~~pp~dlv~~~~-~wg~g~~i~t~L~d~~ge-vA~~ 176 (288)
+|+|+||++||||++++ ++.|+||+||+|+++ +|++|++|.|+|+|++|| +|++
T Consensus 86 ~~~L~pg~tVtIws~~~-g~~~~pp~dlv~k~q~sWg~G~~~~T~L~n~~GEevA~~ 141 (151)
T 1ufg_A 86 KFTLKAGQVVTIWASGA-GATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVAMR 141 (151)
T ss_dssp TCEECTTCEEEEEESSS-SCCCCTTTEEEECSSSCSCCSSEEEEEEECSSSCEEEEE
T ss_pred CcEECCCCEEEEEeCCC-CCCCCCchhEEEecccccCCCCCEEEEEECCCCCEEEEE
Confidence 99999999999999998 889999999999999 899999999999999999 9984
No 2
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=100.00 E-value=1.4e-39 Score=265.60 Aligned_cols=113 Identities=38% Similarity=0.773 Sum_probs=106.2
Q ss_pred cceeEEeeCCCCCeEEEeecCCCcEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCeEecCCcEEEEEecccCCCC
Q psy21 63 SSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGAT 142 (288)
Q Consensus 63 ~~~~~~~~sa~G~v~I~e~d~~GkfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtIwa~~~~~~~ 142 (288)
+++++++++|+|+|+|.|||++|+||+|+|+|+++++|+||+|+|.+|+.. .+|+||++|+|+||++|||||+++ |+.
T Consensus 2 ~~~~s~~~sakG~V~I~evd~~G~fV~L~N~s~~~~~L~gW~l~r~v~~~~-~~y~Fp~~~~L~pg~~vtVwa~g~-g~~ 79 (123)
T 3hn9_A 2 SVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTS-VSYKYTSRYVLKAGQTVTIWAANA-GVT 79 (123)
T ss_dssp --CEEEEEEESSSEEEEEECTTSSEEEEEECSSSCEECTTCEEEEEETTEE-EEEECCTTCEECTTCEEEEEETTS-SCC
T ss_pred ceeEEEEeecCCCEEEEEEcCCCCEEEEEECCCCceecCCcEEEEEeCCCc-eEEEcCCCcEECCCCEEEEEECCC-CCc
Confidence 367899999999999999999999999999999999999999999998754 479999999999999999999999 889
Q ss_pred CCCCCceeeecc-cccCccchhhheeccchh-HHHHH
Q psy21 143 HEPPHNIVMKNQ-KFGSGDEISTILLNTDGE-LANQE 177 (288)
Q Consensus 143 ~~pp~dlv~~~~-~wg~g~~i~t~L~d~~ge-vA~~~ 177 (288)
|+||+||+|+++ +|++|+++.|+|+|++|| +|++.
T Consensus 80 ~~pp~dlv~~~~~~W~~g~~~~t~L~n~~Gee~A~~~ 116 (123)
T 3hn9_A 80 ASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRS 116 (123)
T ss_dssp CBTTTEEEETTCCCCCSSSCEEEEEECTTSCEEEEEE
T ss_pred CCCchhheeccccccCCCCCcEEEEECCCCCEEEEEE
Confidence 999999999999 999999999999999999 99874
No 3
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=270.97 Aligned_cols=119 Identities=36% Similarity=0.754 Sum_probs=100.1
Q ss_pred cccceeEEeeCCCCCeEEEeecCCCcEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCeEecCCcEEEEEecccCC
Q psy21 61 RTSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEG 140 (288)
Q Consensus 61 ~~~~~~~~~~sa~G~v~I~e~d~~GkfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtIwa~~~~~ 140 (288)
++..+++++++|+|+|+|.|||++|+||+|+|+|+++++|+||+|+|.+++ ..++|+||++|+|+||++|||||+|+ |
T Consensus 13 ~~~~~~s~~~SakG~V~I~Evd~~GkfV~L~N~s~~~~~LgGW~L~r~v~g-~~~~y~FP~~~~L~pg~~VtVwa~g~-g 90 (144)
T 3jt0_A 13 SSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGD-TSVSYKYTSRYVLKAGQTVTIWAANA-G 90 (144)
T ss_dssp ------------CCCEEEEEECTTSSEEEEEECSSSCEECTTCEEEEEETT-EEEEEECCTTCEECTTCEEEEEETTS-C
T ss_pred ccceeEEEecccCCCEEEEEECCCCCEEEEEECCCCceecCCcEEEEEeCC-CceEEEcCCCcEECCCCEEEEEECCC-C
Confidence 456789999999999999999999999999999999999999999999997 45679999999999999999999999 8
Q ss_pred CCCCCCCceeeecc-cccCccchhhheeccchh-HHHHHHHHh
Q psy21 141 ATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE-LANQERIID 181 (288)
Q Consensus 141 ~~~~pp~dlv~~~~-~wg~g~~i~t~L~d~~ge-vA~~~~~~~ 181 (288)
+.|+||+||+|+++ +|++|+++.|+|+|++|| +|++.....
T Consensus 91 ~~~~pp~dlv~~~~~sWg~g~~~~T~L~n~~GEevA~~~~~~~ 133 (144)
T 3jt0_A 91 VTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTVFK 133 (144)
T ss_dssp CCCBTTTEEEETTCCCCCTTCCCEEEEECTTSCEEEEEECC--
T ss_pred CCCCCChhheeccccccCCCCCcEEEEECCCCCEEEEEEEEEe
Confidence 89999999999999 999999999999999999 998755444
No 4
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=266.40 Aligned_cols=114 Identities=39% Similarity=0.726 Sum_probs=102.5
Q ss_pred cceeEEeeCCCCCeEEEeecCCCcEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCeEecCCcEEEEEecccCCCC
Q psy21 63 SSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGAT 142 (288)
Q Consensus 63 ~~~~~~~~sa~G~v~I~e~d~~GkfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtIwa~~~~~~~ 142 (288)
.++++++++|+|+|+|.|||++|+||+|+|+|+++++|+||+|+|.+++...++|+||++|+|+||++||||++++ |+.
T Consensus 11 ~~~~s~~~SakG~V~I~E~d~~GefV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtIws~~~-g~~ 89 (139)
T 2lll_A 11 RENLYFQGSASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTVWAAGA-GVA 89 (139)
T ss_dssp --------CCTTSEEEEEECSSCSEEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEEEEGGG-TCC
T ss_pred ccceEEeecCCCCEEEEEECCCCCEEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEEEeCCC-CCC
Confidence 3578899999999999999999999999999999999999999999998778999999999999999999999999 899
Q ss_pred CCCCCceeeecc-cccCccchhhheeccchh-HHHHH
Q psy21 143 HEPPHNIVMKNQ-KFGSGDEISTILLNTDGE-LANQE 177 (288)
Q Consensus 143 ~~pp~dlv~~~~-~wg~g~~i~t~L~d~~ge-vA~~~ 177 (288)
|+||+||+|+++ +|++|+++.|+|+|++|| +|++.
T Consensus 90 ~~pp~dlv~~~q~sWg~G~~~~T~L~n~~GEevAt~~ 126 (139)
T 2lll_A 90 HSPPSTLVWKGQSSWGTGESFRTVLVNADGEEVAMRT 126 (139)
T ss_dssp CBTTTEEEETTCSSSSCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCchhEEEecccccCCCCCEEEEEECCCCCEEEEEE
Confidence 999999999999 899999999999999999 99853
No 5
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=100.00 E-value=1.6e-37 Score=252.58 Aligned_cols=108 Identities=39% Similarity=0.774 Sum_probs=103.0
Q ss_pred eeCCCCCeEEEeecCCCcEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCeEecCCcEEEEEecccCCCCCCCCCc
Q psy21 69 TSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHN 148 (288)
Q Consensus 69 ~~sa~G~v~I~e~d~~GkfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtIwa~~~~~~~~~pp~d 148 (288)
.++++|+|+|.|||++|+||+|+|+|+++++|+||+|+|.+++..+++|+||++|+|+||++||||++++ |+.|+||+|
T Consensus 2 ~~s~kG~V~I~e~d~~g~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtIws~~~-g~~~~pp~d 80 (121)
T 1ifr_A 2 SHRTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAGA-GATHSPPTD 80 (121)
T ss_dssp EEEECSSEEEEEECTTSSEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEEEETTS-SCCCBTTTE
T ss_pred CCCccCCEEEEEECCCCCEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEEEeCCC-CCCCCCchh
Confidence 3578999999999999999999999999999999999999998778999999999999999999999999 889999999
Q ss_pred eeeecc-cccCccchhhheeccchh-HHHHH
Q psy21 149 IVMKNQ-KFGSGDEISTILLNTDGE-LANQE 177 (288)
Q Consensus 149 lv~~~~-~wg~g~~i~t~L~d~~ge-vA~~~ 177 (288)
|+|+++ +|++|+++.|+|+|++|| +|+|.
T Consensus 81 lv~~~~~sWg~g~~~~t~L~n~~GeevA~~~ 111 (121)
T 1ifr_A 81 LVWKAQNTWGCGNSLRTALINSTGEEVAMRK 111 (121)
T ss_dssp EEETTCSCCCCSSCEEEEEECTTSCEEEEEE
T ss_pred EEEecccccCCCCCeEEEEECCCCCEEEEEe
Confidence 999999 899999999999999999 99854
No 6
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=99.89 E-value=2.9e-23 Score=170.99 Aligned_cols=108 Identities=24% Similarity=0.328 Sum_probs=68.1
Q ss_pred hHHHHHHHHhhhhhHHHhHHHHHHHHHH------------------hhCCchhHHHHHHHHHHHHHHHHHHHHH----HH
Q psy21 172 ELANQERIIDNLRKEQSSLLLELKETKG------------------RSGKYDTEMNELRAANYRLTERNKELED----QI 229 (288)
Q Consensus 172 evA~~~~~~~~~~~~~~~~~eEl~~~~~------------------~~~~l~~ei~~L~~~~~~Le~~l~~le~----~l 229 (288)
.+|.+++.++ ..||+.++++++.... .+++|+++|+++++++..|+..+.+++. ++
T Consensus 2 ~ia~knr~ea--E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l 79 (131)
T 3tnu_A 2 STAEKNRKDA--EEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQL 79 (131)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3566666665 6666666666555444 4455566666666666666666666554 45
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhhhcc
Q psy21 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAE 281 (288)
Q Consensus 230 ~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLLEgE 281 (288)
.+++..|..+|.+|++++.+|++|++|||+|||+|++||+||+|||+|||||
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLLEGE 131 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLEGE 131 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHCcC
Confidence 6889999999999999999999999999999999999999999999999997
No 7
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=99.89 E-value=5.1e-23 Score=169.06 Aligned_cols=93 Identities=28% Similarity=0.495 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy21 189 SLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELED----QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIK 264 (288)
Q Consensus 189 ~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~----~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vK 264 (288)
..++|+.+++..+++|+++|+++++++.+|+..+.+++. ++.+++..|..+|.+|++++.+|++|++|||+|||+|
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvK 112 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTK 112 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666666666666666654 4568899999999999999999999999999999999
Q ss_pred hhhhhhHHHhhhhhhcc
Q psy21 265 INLDVEIAQYRNLMEAE 281 (288)
Q Consensus 265 l~Le~EIatYrkLLEgE 281 (288)
++||+||+|||+|||||
T Consensus 113 l~Ld~EIatYRkLLEgE 129 (129)
T 3tnu_B 113 LALDVEIATYRKLLEGE 129 (129)
T ss_dssp HHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHhHCcC
Confidence 99999999999999997
No 8
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=99.87 E-value=4.2e-22 Score=152.03 Aligned_cols=80 Identities=35% Similarity=0.685 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhhhcc
Q psy21 206 TEMNELRAANYRLTERNKELED----QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAE 281 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~le~----~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLLEgE 281 (288)
++|++|++++.+|+..+.+++. ++.+++..|..+|.+|++++.+|++|++|||+|||+|++||+||||||+|||||
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEGE 80 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGE 80 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 4789999999999999998876 467899999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy21 282 ESSL 285 (288)
Q Consensus 282 e~Rl 285 (288)
++|+
T Consensus 81 e~Rl 84 (84)
T 1gk4_A 81 ESRI 84 (84)
T ss_dssp ----
T ss_pred cccC
Confidence 9986
No 9
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=99.85 E-value=6.1e-22 Score=151.71 Aligned_cols=81 Identities=32% Similarity=0.576 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhhhc
Q psy21 205 DTEMNELRAANYRLTERNKELED----QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEA 280 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le~----~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLLEg 280 (288)
.+||+.|++++..|+..+.+++. ++.+++..|..+|.+|++++.+|++|++|||+|||+|++||+||||||+||||
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 35778888888888888888775 56789999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy21 281 EESSL 285 (288)
Q Consensus 281 Ee~Rl 285 (288)
|++|+
T Consensus 82 Ee~Rl 86 (86)
T 1x8y_A 82 EEERL 86 (86)
T ss_dssp HHCC-
T ss_pred CcccC
Confidence 99986
No 10
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=99.83 E-value=5e-21 Score=148.97 Aligned_cols=84 Identities=31% Similarity=0.518 Sum_probs=67.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhh
Q psy21 202 GKYDTEMNELRAANYRLTERNKELED----QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNL 277 (288)
Q Consensus 202 ~~l~~ei~~L~~~~~~Le~~l~~le~----~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkL 277 (288)
.+-+.+|++|++++.+|++++++++. ++++++..|..+|++|++++.+|++|++|||+|||+|++||+||+|||+|
T Consensus 8 ~~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 8 SSRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999998886 46789999999999999999999999999999999999999999999999
Q ss_pred hhccccCC
Q psy21 278 MEAEESSL 285 (288)
Q Consensus 278 LEgEe~Rl 285 (288)
||||++||
T Consensus 88 LEGEe~RL 95 (95)
T 3mov_A 88 LEGEEERL 95 (95)
T ss_dssp HCCCC---
T ss_pred HccCccCC
Confidence 99999986
No 11
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=99.79 E-value=6e-20 Score=130.94 Aligned_cols=58 Identities=31% Similarity=0.496 Sum_probs=53.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhhhccccCCC
Q psy21 229 IEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLP 286 (288)
Q Consensus 229 l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLLEgEe~Rl~ 286 (288)
+.+++..|..+|++|++++.+|++|++|||+|||+|++||+||||||+|||||++|++
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEgEe~rl~ 59 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGEESRIS 59 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCccccC
Confidence 4578899999999999999999999999999999999999999999999999999974
No 12
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=99.77 E-value=5.2e-19 Score=131.27 Aligned_cols=62 Identities=35% Similarity=0.619 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhhhccccCCCC
Q psy21 226 EDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLPT 287 (288)
Q Consensus 226 e~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLLEgEe~Rl~~ 287 (288)
..+.+.++..|..+|++|++++.+|++|++|||+|||+|++||+||||||+|||||++|++.
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe~Rl~~ 65 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRL 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 44567889999999999999999999999999999999999999999999999999999863
No 13
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=98.98 E-value=5.2e-11 Score=88.18 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=17.0
Q ss_pred CccchhhhhHHHHhhhhhhhhcccccCCCCC
Q psy21 1 MGVVFETRIEEVQKKRKTELLCMNVSGAGSS 31 (288)
Q Consensus 1 ~~~~ld~ei~~yrklle~ee~r~~~~~~~~~ 31 (288)
+|++||+||++|||||||||.|++++|+|++
T Consensus 41 iKl~Le~EIatYRkLLEGEe~Rl~~~~~~~~ 71 (74)
T 2xv5_A 41 IKLALDMEIHAYRKLLEGEEERLRLSPSPTS 71 (74)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCCCCc
Confidence 3789999999999999999999999988754
No 14
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=98.63 E-value=4.4e-09 Score=74.55 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=19.9
Q ss_pred CccchhhhhHHHHhhhhhhhhccc
Q psy21 1 MGVVFETRIEEVQKKRKTELLCMN 24 (288)
Q Consensus 1 ~~~~ld~ei~~yrklle~ee~r~~ 24 (288)
+|++||+||++|||||||||.||+
T Consensus 36 iK~~Le~EIatYRkLLEgEe~rl~ 59 (59)
T 1gk6_A 36 VKMALDIEIATYRKLLEGEESRIS 59 (59)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC---
T ss_pred HHHHhHHHHHHHHHHHccCccccC
Confidence 378999999999999999999984
No 15
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=97.73 E-value=5.2e-05 Score=55.93 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=54.5
Q ss_pred cchhhheeccchhHHHHHHHHhhhhhHHHhHHHHHHHHHHhhC----CchhHHHHHHHHHHHHHHHHHHHH
Q psy21 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSG----KYDTEMNELRAANYRLTERNKELE 226 (288)
Q Consensus 160 ~~i~t~L~d~~gevA~~~~~~~~~~~~~~~~~eEl~~~~~~~~----~l~~ei~~L~~~~~~Le~~l~~le 226 (288)
+.+...++.+|.++|.+++.++ ..||+.+++|++....++. ..+.||.+|++++++|+.+|+.+.
T Consensus 8 ~~il~eiRaQYE~ia~knr~Ea--E~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEA--EEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566677777777999999998 8999999999999887754 468999999999999999887653
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.66 E-value=0.13 Score=41.26 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHHHhhC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy21 173 LANQERIIDNLRKEQSSLLLELKETKGRSG----KYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQT 248 (288)
Q Consensus 173 vA~~~~~~~~~~~~~~~~~eEl~~~~~~~~----~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~ 248 (288)
+|.+++.++ ..||+.++++++....++. ..+.+|.+|++++++|+.+++.+..+...+...|...+......-.
T Consensus 1 ia~knr~ea--E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~ 78 (129)
T 3tnu_B 1 MANRSRTEA--ESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK 78 (129)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777 8999999999999888754 4689999999999999999988777665555555544433332222
Q ss_pred HHHHHHHHH-HHHhhhhhhhhhhHHHhhhhhh
Q psy21 249 EMTEQLKDY-RELMEIKINLDVEIAQYRNLME 279 (288)
Q Consensus 249 ~~~~ql~ey-q~LL~vKl~Le~EIatYrkLLE 279 (288)
++...+... .+|-.+|..+..=...|..||.
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 1233334444444456776664
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=95.45 E-value=0.017 Score=56.30 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=48.6
Q ss_pred hhHHHhHHHHHHHHHHhhC---CchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy21 184 RKEQSSLLLELKETKGRSG---KYDTEMN-ELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDY 257 (288)
Q Consensus 184 ~~~~~~~~eEl~~~~~~~~---~l~~ei~-~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~ey 257 (288)
..+++.++++|+.-..+.. ....|+. +|+++++.|++++...-.+++-+|..|..+-.+|++|..+|.-|++..
T Consensus 84 eqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 84 HSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555543333322 2345666 788888888887776556677778888877778888888877776544
No 18
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.28 E-value=0.12 Score=41.47 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=46.4
Q ss_pred hhHHHhHHHHHHHHHHhhCCchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHH
Q psy21 184 RKEQSSLLLELKETKGRSGKYDTEMNELRAA----NYRLTERNKELEDQIEYEQSKFARME---AEIKRLQTEMTEQLKD 256 (288)
Q Consensus 184 ~~~~~~~~eEl~~~~~~~~~l~~ei~~L~~~----~~~Le~~l~~le~~l~~~q~~i~~le---~el~~lr~~~~~ql~e 256 (288)
+..++....|+..++.+..+|+..|.+++.. +..++..+..++.++...+..+...- .+|-.++-.+..-+.-
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIat 123 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777776666666666665543 23344455566666655554444332 2455566666666677
Q ss_pred HHHHhh
Q psy21 257 YRELME 262 (288)
Q Consensus 257 yq~LL~ 262 (288)
|..||.
T Consensus 124 YRkLLE 129 (131)
T 3tnu_A 124 YRRLLE 129 (131)
T ss_dssp HHHHTT
T ss_pred HHHhHC
Confidence 888875
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.32 E-value=1.5 Score=34.94 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhhhcccc
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLLEgEe~ 283 (288)
+..+.+.|..++++-...+.+.+..+..+...-..|+..+..+...+...-.....|..-|-.|+.+|..+.+=++..+.
T Consensus 46 l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 46 LLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555566666667788888888888888888899999999999999999988876554
Q ss_pred C
Q psy21 284 S 284 (288)
Q Consensus 284 R 284 (288)
.
T Consensus 126 ~ 126 (129)
T 2fxo_A 126 T 126 (129)
T ss_dssp T
T ss_pred h
Confidence 3
No 20
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=93.42 E-value=0.77 Score=33.83 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=43.7
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy21 200 RSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELM 261 (288)
Q Consensus 200 ~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL 261 (288)
+..++..+++++...++.|+.+++.++.++++-+..-.++..++..+-..+...+.|..+|-
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elR 68 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELR 68 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45567788888888888888888888888877776666667777766666666655555543
No 21
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=92.97 E-value=0.79 Score=33.17 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=39.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy21 203 KYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELM 261 (288)
Q Consensus 203 ~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL 261 (288)
++..+++++...++.|+.+++.++.++++-+..-.++..++..+-..+...+.|..+|-
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34566777777778888888888777776666666666666666666665555555543
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.46 E-value=3.9 Score=34.20 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q psy21 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIA 272 (288)
Q Consensus 230 ~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIa 272 (288)
.+++.+|..|..++.+++........+-+.|-+--..|+.|.+
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888887777777777666666555555544
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.75 E-value=3.6 Score=31.38 Aligned_cols=63 Identities=10% Similarity=0.176 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy21 190 LLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTE 252 (288)
Q Consensus 190 ~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ 252 (288)
+...++....+......+|.+|++.++.++..+..++.++...+..+..-+.......+++..
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~ 90 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445556677777777777777777776666666555555444444444444433
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.77 E-value=2.6 Score=34.08 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy21 190 LLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250 (288)
Q Consensus 190 ~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~ 250 (288)
..++...+..++..+..++.+|+..+..+...+.++..++..++..+..|+.++..+..++
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555444444444555555555555555555555544433
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.69 E-value=1.9 Score=34.89 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Q psy21 208 MNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEI 271 (288)
Q Consensus 208 i~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EI 271 (288)
+-.++.....|+.++.+++.++.++...+..+...+..+..++.....++..|-.-...|+.|.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444444444444444444444443
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.58 E-value=2.6 Score=34.74 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEI 263 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~v 263 (288)
|+.++..|+..+..|+..+.+-...++..++.+..|.-++..+...+...-.|++.|++-
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333444555555556666666666666666667666553
No 27
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.28 E-value=5.5 Score=30.31 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhh
Q psy21 206 TEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYR 275 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYr 275 (288)
.....++..+..++......+..+..++.+|..++.++..+...+......+..-=......+.+++++-
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~ 92 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455556666777777777777777666665554444444344455566777774
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.66 E-value=3.1 Score=32.72 Aligned_cols=46 Identities=11% Similarity=0.257 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHH
Q psy21 206 TEMNELRAANYRLTERNKELEDQIEYEQS-------KFARMEAEIKRLQTEMT 251 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~le~~l~~~q~-------~i~~le~el~~lr~~~~ 251 (288)
.+|..+...+.+|+.++..+...+++++. .-..+|.++..++.++.
T Consensus 27 ~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 27 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 33444444444455554444444433332 23334555555555443
No 29
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.57 E-value=1.3 Score=32.94 Aligned_cols=27 Identities=15% Similarity=0.307 Sum_probs=12.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIE 230 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~ 230 (288)
|+.+|..+...+.+|..++..+...+.
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~e 31 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIM 31 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.24 E-value=4.9 Score=29.61 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=20.4
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 195 KETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229 (288)
Q Consensus 195 ~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l 229 (288)
+.+...+.-|+++|.+|+..+..|..+.+++....
T Consensus 16 q~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 16 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444566677777777777666666544433
No 31
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.86 E-value=3 Score=30.92 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhh
Q psy21 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLM 278 (288)
Q Consensus 240 e~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLL 278 (288)
+.++..++..+..-..-|++=++.+..++.+|...|+-+
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkdv 58 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333333444444444445555555555555555555544
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.77 E-value=1.8 Score=46.46 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=9.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhh
Q psy21 235 KFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRN 276 (288)
Q Consensus 235 ~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrk 276 (288)
.+..++.++..+..++.....+...|..-+-.++.+|...+.
T Consensus 921 ~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~ 962 (1184)
T 1i84_S 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333444444444444444444433
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.72 E-value=7.5 Score=29.43 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy21 190 LLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTE 252 (288)
Q Consensus 190 ~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ 252 (288)
+...++....+......+|.+|++.++.|+..+..++.++...+..+..-+.......++++.
T Consensus 28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444556677777777777777777777766666655555444444444444443
No 34
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.65 E-value=9.9 Score=29.71 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy21 237 ARMEAEIKRLQTEMTEQLKDY 257 (288)
Q Consensus 237 ~~le~el~~lr~~~~~ql~ey 257 (288)
..||.++..++.++.-.-+-|
T Consensus 86 ~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554443333
No 35
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.63 E-value=7.5 Score=30.50 Aligned_cols=57 Identities=7% Similarity=0.128 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy21 205 DTEMNELRAANYRLTERNKELED----QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELM 261 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le~----~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL 261 (288)
+.+-...+.++..|.+.|..... +++.++..|..|...|+...+++++..++.+.|-
T Consensus 45 eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 45 EAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 34444444555555544443332 2555566666666666666666666666665543
No 36
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=86.17 E-value=6.7 Score=28.97 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy21 243 IKRLQTEMTEQLKDYRELMEI 263 (288)
Q Consensus 243 l~~lr~~~~~ql~eyq~LL~v 263 (288)
|-.++-.+..-..-|..||..
T Consensus 61 LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 61 LLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHcC
Confidence 344555555556678777753
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.89 E-value=11 Score=36.98 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy21 224 ELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRE 259 (288)
Q Consensus 224 ~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~ 259 (288)
+|+.+++.++.+|...-..|+.|+..++.|+.+.|.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444335555666666665555544
No 38
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=85.34 E-value=3.9 Score=30.28 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy21 205 DTEMNELRAANYRLTERNKELEDQIEY------EQSKFARMEAEIKRLQTEMTEQLKDYREL 260 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le~~l~~------~q~~i~~le~el~~lr~~~~~ql~eyq~L 260 (288)
+.++..|...|..|+.++..++.+|.+ ....+..+-.++..+..++.........|
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888887753 23466677777777777777766555544
No 39
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.17 E-value=7.9 Score=29.41 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=10.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy21 232 EQSKFARMEAEIKRLQTEMTEQLKDYR 258 (288)
Q Consensus 232 ~q~~i~~le~el~~lr~~~~~ql~eyq 258 (288)
++..+..+..++..+...+...-.+|.
T Consensus 76 l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 76 SKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333333
No 40
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.61 E-value=18 Score=30.78 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=6.6
Q ss_pred HHHhhhhhhhhhhHHH
Q psy21 258 RELMEIKINLDVEIAQ 273 (288)
Q Consensus 258 q~LL~vKl~Le~EIat 273 (288)
...+--..-|+.|+..
T Consensus 140 n~aiEr~alLE~El~E 155 (189)
T 2v71_A 140 NQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 41
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=84.09 E-value=7.1 Score=28.65 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=27.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~ 250 (288)
|+..+.+|.+...+.+..|......+..+|..+..-++++..+..++
T Consensus 31 Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444555555555566666666666666666666666666666554
No 42
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=84.00 E-value=10 Score=28.82 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=18.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy21 229 IEYEQSKFARMEAEIKRLQTEMTEQLKDYRELM 261 (288)
Q Consensus 229 l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL 261 (288)
+..+...|..++..+..+...+...-..++.++
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666665555554544444
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.84 E-value=5.5 Score=38.67 Aligned_cols=9 Identities=22% Similarity=0.228 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy21 190 LLLELKETK 198 (288)
Q Consensus 190 ~~eEl~~~~ 198 (288)
..+++.+.+
T Consensus 482 ~~~~i~~~~ 490 (597)
T 3oja_B 482 LHAEIDTNL 490 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhhh
Confidence 333333333
No 44
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=83.65 E-value=11 Score=27.59 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy21 243 IKRLQTEMTEQLKDYRELMEI 263 (288)
Q Consensus 243 l~~lr~~~~~ql~eyq~LL~v 263 (288)
|-.++-.+..-..-|..||..
T Consensus 59 LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 59 LLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHcC
Confidence 334445555555678777753
No 45
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.65 E-value=3.4 Score=30.37 Aligned_cols=9 Identities=11% Similarity=0.420 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy21 243 IKRLQTEMT 251 (288)
Q Consensus 243 l~~lr~~~~ 251 (288)
|..+|..|+
T Consensus 64 L~elRqgLa 72 (79)
T 3cvf_A 64 LSELREGLA 72 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.21 E-value=12 Score=27.59 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=19.2
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKF 236 (288)
Q Consensus 193 El~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i 236 (288)
|+.+++.+...|..+.+++++....|..++..+..+...++..|
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 47
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.46 E-value=9 Score=27.79 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 191 LLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKF 236 (288)
Q Consensus 191 ~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i 236 (288)
...++....+...+..+|.+|++.++.|+..+..++.++...+..+
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555666666666666666555555555444443
No 48
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=82.10 E-value=8.8 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy21 223 KELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYREL 260 (288)
Q Consensus 223 ~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~L 260 (288)
.+||.+...++..+..|..++..+..++...-..|+.|
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666677777777777777777666666655
No 49
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=81.69 E-value=4.1 Score=30.32 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhh
Q psy21 210 ELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNL 277 (288)
Q Consensus 210 ~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkL 277 (288)
.|++.+..|+.++..++.++..+.+.+..... ...-...-+.|++|.++-|+-..|=-=||..|.+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~--~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~rgv 70 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDA--KQTVQKHIDLLHTYNEIRDIALGMIGKVAEHEKC 70 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 44444444444444444444444333322100 1112234456899999999999988888887753
No 50
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.40 E-value=27 Score=30.53 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=9.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q psy21 232 EQSKFARMEAEIKRLQTEMTEQ 253 (288)
Q Consensus 232 ~q~~i~~le~el~~lr~~~~~q 253 (288)
.+..+..++.++...+.++...
T Consensus 130 ~~~~l~~~~~~l~~~~~~~~~~ 151 (256)
T 3na7_A 130 LKKEMLELEKLALELESLVENE 151 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 51
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.80 E-value=13 Score=39.52 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=23.9
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHH
Q psy21 201 SGKYDTEMNELRAANYRLTERNKELEDQI----EYEQSKFARMEAEIKRLQTEMT 251 (288)
Q Consensus 201 ~~~l~~ei~~L~~~~~~Le~~l~~le~~l----~~~q~~i~~le~el~~lr~~~~ 251 (288)
+.+++.++++|+..++.+..+...++..+ ++++.++..|+.+.+.++.++.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333322 2345566666666665555443
No 52
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=79.78 E-value=1 Score=27.74 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=17.4
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHH
Q psy21 200 RSGKYDTEMNELRAANYRLTERNKEL 225 (288)
Q Consensus 200 ~~~~l~~ei~~L~~~~~~Le~~l~~l 225 (288)
+.+..+.+|++|++++..|+.+++-|
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34445667777877777777776544
No 53
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.59 E-value=15 Score=26.55 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy21 221 RNKELEDQIEYEQSKFARMEAEIKRLQTEMTE 252 (288)
Q Consensus 221 ~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ 252 (288)
.....+..+..++.+|..++.++......+..
T Consensus 35 ~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555666666666666655554443
No 54
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=79.40 E-value=3.8 Score=29.88 Aligned_cols=41 Identities=20% Similarity=0.054 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy21 210 ELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250 (288)
Q Consensus 210 ~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~ 250 (288)
+|..++..||..+.-.+..++.++..+.....+|..++..+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444444444444444444444444433
No 55
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.40 E-value=18 Score=27.27 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhh
Q psy21 217 RLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYR 275 (288)
Q Consensus 217 ~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYr 275 (288)
.++......+..+..++.++..++.++......+......+..-=.....-+.|+++.-
T Consensus 34 ~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLn 92 (101)
T 3u59_A 34 QAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555556556655555555444333333332223334455666653
No 56
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.39 E-value=5.4 Score=25.83 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy21 205 DTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEI 243 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el 243 (288)
+..|..|++.+-+|++.-+.+|.-++++++.|++||.+.
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555566666555544
No 57
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=79.37 E-value=8.8 Score=25.74 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy21 206 TEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRL 246 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~l 246 (288)
..+.+|+.++..|..++..|...+...+..|..|.+++.++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666666666666666666666666666666666543
No 58
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=79.07 E-value=14 Score=27.65 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=10.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q psy21 231 YEQSKFARMEAEIKRLQTEMTE 252 (288)
Q Consensus 231 ~~q~~i~~le~el~~lr~~~~~ 252 (288)
.+...|..++..+..+...|..
T Consensus 76 ~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 76 TLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 59
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=78.91 E-value=4.8 Score=29.58 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy21 206 TEMNELRAANYRLTERNKELED 227 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~le~ 227 (288)
.||+..+..+..++.++++.+.
T Consensus 31 EELs~vr~~ni~~eskL~eae~ 52 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEA 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 60
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.57 E-value=16 Score=27.37 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q psy21 240 EAEIKRLQTEMTEQ 253 (288)
Q Consensus 240 e~el~~lr~~~~~q 253 (288)
+.+|..+|..+...
T Consensus 55 e~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 55 EEEMRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 61
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=77.98 E-value=11 Score=27.64 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy21 190 LLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAE 242 (288)
Q Consensus 190 ~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~e 242 (288)
.+.|++.++.++.+++.|-....+.+.+-.++|..++.++..-.+.|..|..+
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555555555555544444444444445555555544444444444443
No 62
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.51 E-value=32 Score=29.17 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=11.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELE 226 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le 226 (288)
|+.+|..+.+++..|...+..+.
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~ 69 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLK 69 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544443
No 63
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=77.23 E-value=13 Score=28.47 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=13.8
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Q psy21 193 ELKETKGRSGKYDTEMNELRAANYRLTERN 222 (288)
Q Consensus 193 El~~~~~~~~~l~~ei~~L~~~~~~Le~~l 222 (288)
++..++.++.+|+.|-+.|+..+..|+.++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444
No 64
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.15 E-value=11 Score=29.64 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=8.4
Q ss_pred HHHHHHHhhHHHHHHHHH
Q psy21 230 EYEQSKFARMEAEIKRLQ 247 (288)
Q Consensus 230 ~~~q~~i~~le~el~~lr 247 (288)
.++...|..|+++|..-+
T Consensus 43 ~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 65
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=75.24 E-value=33 Score=28.16 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhh
Q psy21 246 LQTEMTEQLKDYRELMEIKINLDVEIAQYRNL 277 (288)
Q Consensus 246 lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkL 277 (288)
+..+|..-+.++..++.---.|+-||+...+|
T Consensus 124 i~~eLd~tl~el~~~~~~~~~~~~~~~~~~~~ 155 (155)
T 2efr_A 124 ISEEMKQLEDKVEELLSKNYHLENEVARLKKL 155 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHhhcC
Confidence 33344444444444444445667777766553
No 66
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.73 E-value=32 Score=32.31 Aligned_cols=18 Identities=11% Similarity=0.375 Sum_probs=11.8
Q ss_pred cccC----ccchhhheeccchh
Q psy21 155 KFGS----GDEISTILLNTDGE 172 (288)
Q Consensus 155 ~wg~----g~~i~t~L~d~~ge 172 (288)
.||. |+.+...|..++-.
T Consensus 43 DwG~kCPsGCrLqg~Ldk~er~ 64 (390)
T 1deq_A 43 DWNTKCPSGCRMKGLIDEVDQD 64 (390)
T ss_pred hccCCCCccchHHHHHHHhhhh
Confidence 5764 88887777665543
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=74.37 E-value=34 Score=27.98 Aligned_cols=61 Identities=16% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy21 186 EQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRL 246 (288)
Q Consensus 186 ~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~l 246 (288)
.+.....|+..+..++.+++.+|.+-.+.++.|..++..+.-++.....++..++.|-..+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666666666666666666666555555555555555555544333
No 68
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=74.28 E-value=7.1 Score=28.40 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=32.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy21 203 KYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMT 251 (288)
Q Consensus 203 ~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~ 251 (288)
+++..|.+|+-++.-.+..+++|...+..-+..|..|..+++.+...+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777776666677777777666665543
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.24 E-value=30 Score=27.18 Aligned_cols=16 Identities=6% Similarity=0.445 Sum_probs=5.9
Q ss_pred HhhHHHHHHHHHHHHH
Q psy21 236 FARMEAEIKRLQTEMT 251 (288)
Q Consensus 236 i~~le~el~~lr~~~~ 251 (288)
+..|...+..|.++++
T Consensus 42 v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 42 VLQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 70
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=74.16 E-value=14 Score=28.26 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=26.5
Q ss_pred HhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 199 GRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231 (288)
Q Consensus 199 ~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~ 231 (288)
.++..++.+|.+|+..+..|..++..||.+|.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888888887754
No 71
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=73.51 E-value=27 Score=27.02 Aligned_cols=10 Identities=10% Similarity=-0.027 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q psy21 214 ANYRLTERNK 223 (288)
Q Consensus 214 ~~~~Le~~l~ 223 (288)
+++.|+.+..
T Consensus 63 ~I~vLkaQv~ 72 (110)
T 2v4h_A 63 TVPVLKAQAD 72 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 72
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.40 E-value=4.6 Score=29.08 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=7.0
Q ss_pred hHHHhHHHHHHHHHHhh
Q psy21 185 KEQSSLLLELKETKGRS 201 (288)
Q Consensus 185 ~~~~~~~eEl~~~~~~~ 201 (288)
..++.+.+|++.....+
T Consensus 26 ~~L~~K~eELr~kd~~I 42 (72)
T 3nmd_A 26 YALQEKIEELRQRDALI 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 73
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.20 E-value=25 Score=25.72 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 190 LLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231 (288)
Q Consensus 190 ~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~ 231 (288)
..+||...+..+..+.+++.+....++.|..+++.++.++..
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666665555555444
No 74
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=71.52 E-value=17 Score=27.32 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy21 243 IKRLQTEMTEQLKDYRELMEI 263 (288)
Q Consensus 243 l~~lr~~~~~ql~eyq~LL~v 263 (288)
|-.++-.+..-+..|..||..
T Consensus 70 LlnvKl~Le~EIatYrkLLEG 90 (95)
T 3mov_A 70 LLDVKLALDMEISAYRKLLEG 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 344455555556678888753
No 75
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=71.35 E-value=26 Score=29.72 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy21 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEI 243 (288)
Q Consensus 207 ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el 243 (288)
-|+.|..++..|..+++..+.++..++.++..++.+.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444433333333333333333333
No 76
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=70.44 E-value=33 Score=26.07 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=38.5
Q ss_pred hhhHHHhHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy21 183 LRKEQSSLLLELKETKGRS---GKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYR 258 (288)
Q Consensus 183 ~~~~~~~~~eEl~~~~~~~---~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq 258 (288)
+.+.++..++-....+.+. ++|-.+--.|.+....++.+...+...-...-.+|..|+.++.+++.+-...+++.+
T Consensus 11 l~KdFSe~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 11 LQRDFSETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp ---CCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444332 123334444555555555544444433333355677777777777776666555544
No 77
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.82 E-value=24 Score=41.90 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhh
Q psy21 225 LEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYR 275 (288)
Q Consensus 225 le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYr 275 (288)
++.++...++.+...+++|+.+.+.++....+|+.+..-|..|+.|+..-.
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677777888888888888888899999988888888876544
No 78
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.83 E-value=40 Score=26.39 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy21 219 TERNKELEDQIEYEQSKFARMEAEIKRLQTEMT 251 (288)
Q Consensus 219 e~~l~~le~~l~~~q~~i~~le~el~~lr~~~~ 251 (288)
+.++.++++++..++..+...++++.++|.+..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344666666666666666666666666666554
No 79
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.56 E-value=15 Score=25.37 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=7.4
Q ss_pred hCCchhHHHHHHHHHHHHHH
Q psy21 201 SGKYDTEMNELRAANYRLTE 220 (288)
Q Consensus 201 ~~~l~~ei~~L~~~~~~Le~ 220 (288)
+..|+.+-.+|+..+..|+.
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 80
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=68.44 E-value=50 Score=27.43 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=5.4
Q ss_pred hhhhhHHHhh
Q psy21 266 NLDVEIAQYR 275 (288)
Q Consensus 266 ~Le~EIatYr 275 (288)
.++.|+.+++
T Consensus 151 ~~eqE~~~H~ 160 (168)
T 3o0z_A 151 RLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 4555655554
No 81
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=66.85 E-value=22 Score=30.22 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy21 239 MEAEIKRLQTEMTEQLKDYRELMEIK 264 (288)
Q Consensus 239 le~el~~lr~~~~~ql~eyq~LL~vK 264 (288)
.+.++++....+.-..-=|..|-+++
T Consensus 60 ~~~~~~~~~e~i~i~~DL~e~LTGl~ 85 (190)
T 4emc_A 60 LKTQTSQQAENSEVIKDLYEYLCNVR 85 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred hhhHHHHHHHhhhHHHHHHHHccCcE
Confidence 33333333334443344455555544
No 82
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=66.84 E-value=30 Score=25.17 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=4.6
Q ss_pred hhHHHHHHHHH
Q psy21 205 DTEMNELRAAN 215 (288)
Q Consensus 205 ~~ei~~L~~~~ 215 (288)
++||+.|+++-
T Consensus 24 qaEl~sLrrT~ 34 (78)
T 3iv1_A 24 QAELNALKRTE 34 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 34444444443
No 83
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=66.51 E-value=12 Score=28.84 Aligned_cols=46 Identities=24% Similarity=0.241 Sum_probs=32.7
Q ss_pred EEEEeCCccceeccCeEEEEEeCCcccEEE-EecCC---eEecCCcEEEE
Q psy21 88 VKLYNKGSEEQSLGNWQLVRKVQGEVKTSF-KFHRT---LKIEAGGTVTV 133 (288)
Q Consensus 88 V~l~N~s~~~~~L~gw~l~r~v~~~~~~~y-~Fp~~---~~L~~g~~vtI 133 (288)
|.|.|.++++++|+.-.++-.-..+.+... +...+ =.|+||+.|+=
T Consensus 33 V~vaNl~~~~idLsk~C~~a~~~~gkef~ldTVde~L~~g~lk~g~~vkG 82 (106)
T 3nrf_A 33 VRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGASVEG 82 (106)
T ss_dssp EEEECCSSSCEECTTCEEEEEETTSCEEEEEEECGGGGCSEECTTCEEEE
T ss_pred EEEecCCCCccccchhhheeeCcCCCEEEecccchhhhhccccCCCceee
Confidence 789999999999999999877654343332 11122 36999988873
No 84
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=65.68 E-value=21 Score=27.28 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=16.9
Q ss_pred EEEEeCCccceeccCeEEEEEeCC
Q psy21 88 VKLYNKGSEEQSLGNWQLVRKVQG 111 (288)
Q Consensus 88 V~l~N~s~~~~~L~gw~l~r~v~~ 111 (288)
|.|.|++... |.||+|.-..++
T Consensus 21 vtVtN~g~~~--i~gWtv~~~~p~ 42 (107)
T 3ndz_E 21 VTIKNNGTTP--INGWTLKWTMPI 42 (107)
T ss_dssp EEEEECSSSC--EESCEEEEECCT
T ss_pred EEEEeCCCCc--ccCcEEEEEcCC
Confidence 6789998765 579999877653
No 85
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.03 E-value=25 Score=22.67 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy21 211 LRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQT 248 (288)
Q Consensus 211 L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~ 248 (288)
|++.+.+|....-.+|..-+++...|+.|..+++++..
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 44455555544434443333344444444444444433
No 86
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=64.70 E-value=25 Score=26.38 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q psy21 239 MEAEIKRLQTEMT 251 (288)
Q Consensus 239 le~el~~lr~~~~ 251 (288)
+|+||.++|.+++
T Consensus 73 YEeEI~rLr~eLe 85 (92)
T 3vp9_A 73 YEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 87
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=64.31 E-value=62 Score=26.98 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=17.1
Q ss_pred HHHHHHHhhhhhhhhhhHHHh
Q psy21 254 LKDYRELMEIKINLDVEIAQY 274 (288)
Q Consensus 254 l~eyq~LL~vKl~Le~EIatY 274 (288)
+.-+..|-+--|.|+.||..|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~ 199 (201)
T 3u0c_A 179 LSIHSKLTDKSMQLEKEIDSF 199 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhchHHHHHHHHhhcc
Confidence 556778888899999999765
No 88
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.21 E-value=4.4 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy21 208 MNELRAANYRLTERNKE 224 (288)
Q Consensus 208 i~~L~~~~~~Le~~l~~ 224 (288)
+++|+.++..|..++++
T Consensus 28 ~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 89
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=61.92 E-value=36 Score=27.06 Aligned_cols=50 Identities=12% Similarity=0.257 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy21 214 ANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEI 263 (288)
Q Consensus 214 ~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~v 263 (288)
.++.|+-+.++++..+.-.+.....=...|+.+...-.+...||...|..
T Consensus 56 ~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~ 105 (130)
T 3cl3_D 56 QVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKS 105 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666776666666665555667777778788888888886554
No 90
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=61.28 E-value=14 Score=33.97 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy21 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRL 246 (288)
Q Consensus 207 ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~l 246 (288)
+|..|+..+...+.++..|+..+...+.+|..|+..+..+
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444433333
No 91
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=61.12 E-value=42 Score=23.99 Aligned_cols=9 Identities=11% Similarity=0.486 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy21 243 IKRLQTEMT 251 (288)
Q Consensus 243 l~~lr~~~~ 251 (288)
|..++..|+
T Consensus 58 L~elrq~La 66 (72)
T 3cve_A 58 LTELRDNLA 66 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444333
No 92
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=60.79 E-value=41 Score=23.68 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy21 206 TEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQ 247 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr 247 (288)
.++++|+.....-...+.....++..++..|..|+.+|..++
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555544444444444444555555555555555555443
No 93
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.37 E-value=22 Score=24.18 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy21 205 DTEMNELRAANYRLTERNKELE 226 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le 226 (288)
+.++..|...+..|..++..|.
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333
No 94
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=60.35 E-value=66 Score=30.43 Aligned_cols=16 Identities=0% Similarity=-0.095 Sum_probs=8.0
Q ss_pred hHHHhHHHHHHHHHHh
Q psy21 185 KEQSSLLLELKETKGR 200 (288)
Q Consensus 185 ~~~~~~~eEl~~~~~~ 200 (288)
..++.+.+++..++..
T Consensus 48 ~elsn~ts~v~~Lvk~ 63 (409)
T 1m1j_C 48 QQATNSTGSIEYLIQH 63 (409)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555443
No 95
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=59.60 E-value=55 Score=25.29 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=1.1
Q ss_pred HhhhhhhhhhhHHHh
Q psy21 260 LMEIKINLDVEIAQY 274 (288)
Q Consensus 260 LL~vKl~Le~EIatY 274 (288)
||.--.....||.+|
T Consensus 128 lmekdfqvnkeikpy 142 (142)
T 1pl5_A 128 LMEKDFQVNKEIKPY 142 (142)
T ss_dssp TTC------------
T ss_pred HHHHhhhcccccCCC
Confidence 333333444455444
No 96
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=59.37 E-value=55 Score=27.28 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=13.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q psy21 233 QSKFARMEAEIKRLQTEMTEQLKDY 257 (288)
Q Consensus 233 q~~i~~le~el~~lr~~~~~ql~ey 257 (288)
.++|..+-.++.+++.++.....+|
T Consensus 112 eakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544333
No 97
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.42 E-value=1e+02 Score=28.74 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNK-----------ELEDQIEYEQSKFARMEAEIKRLQTEMTEQ 253 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~-----------~le~~l~~~q~~i~~le~el~~lr~~~~~q 253 (288)
++.+|+++++....++.+-. .|+....+.+.+|..+|.++..+..++..+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554322 233333333445555555555555444443
No 98
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.33 E-value=62 Score=25.03 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=25.3
Q ss_pred hHHHHHHHH-HHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 189 SLLLELKET-KGRSGKYDTEMNELRAANYRLTERNKELEDQIE 230 (288)
Q Consensus 189 ~~~eEl~~~-~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~ 230 (288)
.+++..+.. -..+..|+.+|..|+.....|...|+++|....
T Consensus 24 ~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 24 EKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344443332 234556777777777777777777777765443
No 99
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.02 E-value=31 Score=32.39 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYEQSKF 236 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i 236 (288)
++.+|..|+.+...|+..+.+++.++..++..+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 100
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=57.20 E-value=63 Score=25.54 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=1.2
Q ss_pred HhhhhhhhhhhHHHh
Q psy21 260 LMEIKINLDVEIAQY 274 (288)
Q Consensus 260 LL~vKl~Le~EIatY 274 (288)
||.--.....||..|
T Consensus 152 lmekdfqvnkeikpy 166 (166)
T 1nyh_A 152 LMEKDFQVNKEIKPY 166 (166)
T ss_dssp SCC------------
T ss_pred HHHHhhccccccCCC
Confidence 343333444455444
No 101
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.16 E-value=60 Score=24.52 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=13.9
Q ss_pred HHHhHHHHHHHHHHhhCCchhHHHHHH
Q psy21 186 EQSSLLLELKETKGRSGKYDTEMNELR 212 (288)
Q Consensus 186 ~~~~~~eEl~~~~~~~~~l~~ei~~L~ 212 (288)
.|..+.+++.++..++.+...++..|.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344555555555555544444444444
No 102
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=56.93 E-value=66 Score=24.86 Aligned_cols=15 Identities=7% Similarity=0.085 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHH
Q psy21 206 TEMNELRAANYRLTE 220 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~ 220 (288)
.++++|+..+..+..
T Consensus 45 ~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 45 ELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555444
No 103
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=56.80 E-value=29 Score=30.32 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy21 213 AANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250 (288)
Q Consensus 213 ~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~ 250 (288)
+.+..|+..++.++.+....++.++....+++++|...
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 104
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.65 E-value=80 Score=25.79 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy21 211 LRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDY 257 (288)
Q Consensus 211 L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~ey 257 (288)
+..+|..|...+.+.+.+-......+..|+..+.++...+...-..|
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~ 121 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY 121 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334333333333333333334444444444444444433333
No 105
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=56.50 E-value=40 Score=24.79 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Q psy21 173 LANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219 (288)
Q Consensus 173 vA~~~~~~~~~~~~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le 219 (288)
+|.+.++ .+..+.+|...+..++..++.+|..|+..+..|.
T Consensus 25 lAE~Rr~------AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 25 VAEQRRK------ALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666443 4456777777777766666666666666554443
No 106
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=56.38 E-value=31 Score=27.32 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy21 210 ELRAANYRLTERNKELED 227 (288)
Q Consensus 210 ~L~~~~~~Le~~l~~le~ 227 (288)
+|+..+..++++|.+|+.
T Consensus 71 EL~~~l~sie~dLeDLe~ 88 (130)
T 4dnd_A 71 ELRNGLRSIEWDLEDLEE 88 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 107
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=55.99 E-value=60 Score=24.82 Aligned_cols=51 Identities=10% Similarity=0.151 Sum_probs=25.0
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy21 200 RSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250 (288)
Q Consensus 200 ~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~ 250 (288)
+++-|+..+.++......+.+++++--..+......+..|..++..++..+
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555554444444444444455555555444433
No 108
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=55.46 E-value=65 Score=24.38 Aligned_cols=51 Identities=16% Similarity=0.325 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhh
Q psy21 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLM 278 (288)
Q Consensus 228 ~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLL 278 (288)
.+++..+.+.+.+.++.+-..+|.+....-.+|+.---.|+-|||-..+|+
T Consensus 56 ~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 56 TLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344445555555556666666666666666778887788888998888875
No 109
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=54.82 E-value=20 Score=23.14 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 210 ELRAANYRLTERNKELEDQIEYEQ 233 (288)
Q Consensus 210 ~L~~~~~~Le~~l~~le~~l~~~q 233 (288)
+|+.+-..|+.++..+|..|..++
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 110
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.70 E-value=26 Score=32.93 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy21 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIK 244 (288)
Q Consensus 207 ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~ 244 (288)
+|..|+..+..|+.++.+++..++.++..+..+.+.+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444444444444333
No 111
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=54.67 E-value=58 Score=23.54 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIK 244 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~ 244 (288)
|-.++++|......|..++..+.......+.++..+|.++.
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555544444445555555555544
No 112
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=53.98 E-value=16 Score=28.51 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=29.7
Q ss_pred cEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCC-eEecCCcEEEEE
Q psy21 86 KFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRT-LKIEAGGTVTVW 134 (288)
Q Consensus 86 kfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~-~~L~~g~~vtIw 134 (288)
.+++|.|++++.+ .|+|+-+... .|..-|. =+|.||.++.|-
T Consensus 29 ~~l~l~N~s~~~v---aFKVKTT~p~----~y~VrP~~Gii~P~~s~~v~ 71 (126)
T 1msp_A 29 YHIKITNAGGRRI---GWAIKTTNMR----RLSVDPPCGVLDPKEKVLMA 71 (126)
T ss_dssp EEEEEEECSSSCE---EEEEEESCTT----TEEEESCEEEECTTCEEEEE
T ss_pred EEEEEECCCCCeE---EEEEEcCCCC----cEEEECCCeEECCCCEEEEE
Confidence 4899999998765 6788865442 3544444 499999886654
No 113
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=53.86 E-value=36 Score=24.14 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=25.9
Q ss_pred hHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy21 185 KEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEI 243 (288)
Q Consensus 185 ~~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el 243 (288)
..+..+++|+.++..-+++++..+...-..+.-|+ .+....+..+..|+..+
T Consensus 10 ~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe-------~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 10 FKLREKQNEIFELKKIAETLRSKLEKYVDITKKLE-------DQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhHHHHhhc
Confidence 34445666666666666666555544433333333 33344444455554433
No 114
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.20 E-value=69 Score=23.95 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q psy21 188 SSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKEL 225 (288)
Q Consensus 188 ~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~l 225 (288)
+....++..+..+++.+..++..+...+..++.-+.++
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333
No 115
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=51.84 E-value=12 Score=27.09 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=7.1
Q ss_pred hHHHhHHHHHHHHH
Q psy21 185 KEQSSLLLELKETK 198 (288)
Q Consensus 185 ~~~~~~~eEl~~~~ 198 (288)
..+...+.+|..+.
T Consensus 15 ~~in~~f~~Lr~lv 28 (83)
T 1nkp_B 15 DHIKDSFHSLRDSV 28 (83)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHC
Confidence 34445555555544
No 116
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=51.51 E-value=15 Score=30.15 Aligned_cols=72 Identities=19% Similarity=0.160 Sum_probs=39.9
Q ss_pred EEEEeCCccceec--cCeEEEEEeCCcccEEEEecC---C---eEecCCcEEEEEecccCCCCC-C-CCCceeeeccccc
Q psy21 88 VKLYNKGSEEQSL--GNWQLVRKVQGEVKTSFKFHR---T---LKIEAGGTVTVWSFNVEGATH-E-PPHNIVMKNQKFG 157 (288)
Q Consensus 88 V~l~N~s~~~~~L--~gw~l~r~v~~~~~~~y~Fp~---~---~~L~~g~~vtIwa~~~~~~~~-~-pp~dlv~~~~~wg 157 (288)
|.|+|+|++.... ..|.|...-|..-+..|.+.. . -.|.||.+|+-+-.-. ++. . ++-.|.+....|+
T Consensus 53 VTIeN~g~e~~~~s~~~F~L~d~dG~~~~~~~~~~~~~~~l~~g~L~pG~kvtG~ivFe--VP~~~~k~~~L~y~p~~~~ 130 (159)
T 3cfu_A 53 VTMENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTLVSGKKVTGVLSYV--IPKGEQKHYTLVYNPFLAD 130 (159)
T ss_dssp EEEEECSSSCEEEEGGGEEEECTTCCBCCCEECSTTTTTBCCEEEECTTCEEEEEEEEE--ESTTCGGGCEEEECHHHHB
T ss_pred EEEEECCCCceeeCcccEEEEeCCCCEEeceeeecccCCcccccccCCCCEEEEEEEEE--ECCCCCccEEEEEecCccC
Confidence 4689999876665 588887332221122332221 1 2788999999875332 211 1 2345666444676
Q ss_pred Cccc
Q psy21 158 SGDE 161 (288)
Q Consensus 158 ~g~~ 161 (288)
....
T Consensus 131 ~~~~ 134 (159)
T 3cfu_A 131 TNSS 134 (159)
T ss_dssp CCST
T ss_pred Cccc
Confidence 5554
No 117
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=50.54 E-value=69 Score=23.22 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=24.7
Q ss_pred hhHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy21 184 RKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFA 237 (288)
Q Consensus 184 ~~~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~ 237 (288)
+..+.....||..++...++|+.=-+.|...+..|+.+-.+++..++-++.+..
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544444433333444444444444444444444444333
No 118
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=50.40 E-value=49 Score=24.29 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=23.5
Q ss_pred hHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Q psy21 185 KEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTE 220 (288)
Q Consensus 185 ~~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~ 220 (288)
..+..+.+|.+.+..++..++.+|..|+..+..|..
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888777776666666666666554443
No 119
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=50.39 E-value=63 Score=23.61 Aligned_cols=19 Identities=5% Similarity=0.356 Sum_probs=9.0
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q psy21 235 KFARMEAEIKRLQTEMTEQ 253 (288)
Q Consensus 235 ~i~~le~el~~lr~~~~~q 253 (288)
.|+.-+..|.+.++++...
T Consensus 56 eIA~~~~~L~qAraDL~~l 74 (90)
T 4b6x_A 56 EIANTSQQLRHARADLADL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3444445555555544443
No 120
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=50.29 E-value=72 Score=23.34 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy21 186 EQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQ 228 (288)
Q Consensus 186 ~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~ 228 (288)
.+..+-++++.++..+........+|......|..+..+|..+
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555544444444444444444444444444433
No 121
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=50.14 E-value=54 Score=30.00 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy21 214 ANYRLTERNKELEDQIEYEQSKFARMEAEIKRL 246 (288)
Q Consensus 214 ~~~~Le~~l~~le~~l~~~q~~i~~le~el~~l 246 (288)
.+..|+..+...+.++..++..+..++..|+++
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 122
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.05 E-value=29 Score=26.40 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=30.2
Q ss_pred cEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCeEecCCcEEEEEe
Q psy21 86 KFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWS 135 (288)
Q Consensus 86 kfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtIwa 135 (288)
+.+.|.|+|+.+.. |++.- . . .-.-.|...+|+||+++.|.-
T Consensus 45 ~~~~l~N~g~~~~~---f~~~~--~--~-~F~i~P~~g~L~pg~~~~i~V 86 (122)
T 2ys4_A 45 KILLVRNIGNKNAV---FHIKT--C--R-PFSIEPAIGTLNVGESMQLEV 86 (122)
T ss_dssp EEEEEECCSSSCEE---EEEEC--C--T-TEEEESSEEEECTTCEEEEEE
T ss_pred EEEEEEECCCCCEE---EEEec--C--C-CeEEECCcCEECCCCEEEEEE
Confidence 68999999988765 44431 1 2 233467788999999998875
No 123
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.77 E-value=47 Score=21.11 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=8.3
Q ss_pred HHHHhhHHHHHHHHHHH
Q psy21 233 QSKFARMEAEIKRLQTE 249 (288)
Q Consensus 233 q~~i~~le~el~~lr~~ 249 (288)
.+-|+-||.+++.+|..
T Consensus 30 kdliaylekeianlrkk 46 (49)
T 3he5_A 30 KDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555543
No 124
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=49.75 E-value=85 Score=25.55 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=19.7
Q ss_pred hhhhHHHhHHHHHHHHHHhh-------CCchhHHHHHHHHHHHHHHHHH
Q psy21 182 NLRKEQSSLLLELKETKGRS-------GKYDTEMNELRAANYRLTERNK 223 (288)
Q Consensus 182 ~~~~~~~~~~eEl~~~~~~~-------~~l~~ei~~L~~~~~~Le~~l~ 223 (288)
.++..|+++.+|-+..-.-. .+.+..++.+.+.++.++..+.
T Consensus 45 qlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 45 QVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777655543322 2233444444444444444443
No 125
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.65 E-value=24 Score=23.67 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 205 DTEMNELRAANYRLTERNKELEDQIEYEQS 234 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le~~l~~~q~ 234 (288)
..+++.|+..++.|..++..|..+++.+++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444444433
No 126
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=48.98 E-value=76 Score=23.21 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy21 208 MNELRAANYRLTERNKELEDQI 229 (288)
Q Consensus 208 i~~L~~~~~~Le~~l~~le~~l 229 (288)
...|......|..++.+.+...
T Consensus 44 ~~~l~~ek~~L~~ql~eaEe~~ 65 (89)
T 3bas_A 44 NVTLLEQKNDLFGSMKQLEDKV 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3333333333333344444333
No 127
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=48.86 E-value=63 Score=23.05 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy21 205 DTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRE 259 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~ 259 (288)
...+..|...=..|..+|..++....... .+..|..+--.++.+|.+.+..|..
T Consensus 16 d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 16 NPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555555555566666665554322222 6667777777788888888777765
No 128
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=48.77 E-value=38 Score=30.77 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=24.6
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 200 RSGKYDTEMNELRAANYRLTERNKELEDQIEYE 232 (288)
Q Consensus 200 ~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~ 232 (288)
..+....+++.|..+++.|+.++.+++......
T Consensus 179 ~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 179 LFNVDAFKLESLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345567788889888888888888887765433
No 129
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=48.69 E-value=48 Score=25.19 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=17.3
Q ss_pred EEEEeCCccceeccCeEEEEEeCC
Q psy21 88 VKLYNKGSEEQSLGNWQLVRKVQG 111 (288)
Q Consensus 88 V~l~N~s~~~~~L~gw~l~r~v~~ 111 (288)
|.|.|++... |.||+|.-...+
T Consensus 25 vtVtN~g~~~--i~gWtv~~~~~~ 46 (110)
T 1exg_A 25 VTVKNTSSAP--VDGWTLTFSFPS 46 (110)
T ss_dssp EEEEECSSSC--EESEEEEEECSS
T ss_pred EEEEeCCCCc--ccceEEEEEcCC
Confidence 7889998765 579999877654
No 130
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=47.99 E-value=26 Score=31.08 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy21 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRL 246 (288)
Q Consensus 207 ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~l 246 (288)
.+.+|+.++..|..++..|...+..++..|..|.+|+.++
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555444443
No 131
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=47.95 E-value=80 Score=23.19 Aligned_cols=33 Identities=3% Similarity=0.033 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Q psy21 190 LLLELKETKGRSGKYDTEMNELRAANYRLTERN 222 (288)
Q Consensus 190 ~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l 222 (288)
..+++..+..+++.+..++..+...+..++.-+
T Consensus 6 ~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~ 38 (107)
T 1fxk_A 6 QLAQFQQLQQQAQAISVQKQTVEMQINETQKAL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433333
No 132
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=47.58 E-value=68 Score=27.43 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Q psy21 173 LANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTE 220 (288)
Q Consensus 173 vA~~~~~~~~~~~~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~ 220 (288)
+|.+.++ .+..+.+|...+..++..++.+|..|+..+..|..
T Consensus 102 lAE~RR~------AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 102 VAEKRRK------ALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776444 45567888888888877777777777776655554
No 133
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=47.47 E-value=1.1e+02 Score=24.54 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=17.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy21 236 FARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVE 270 (288)
Q Consensus 236 i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~E 270 (288)
+..|-.-+.-+|.+++.-.-..++-|+.--.|-+|
T Consensus 114 Ve~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvE 148 (167)
T 4gkw_A 114 VESLTETIGILRKELENEKLKAAENMDSFEKLSME 148 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444445555555555555555666554444433
No 134
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=46.82 E-value=1e+02 Score=24.02 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy21 214 ANYRLTERNKELEDQIEY 231 (288)
Q Consensus 214 ~~~~Le~~l~~le~~l~~ 231 (288)
....|+..+.+++.++..
T Consensus 77 ~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 135
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=46.48 E-value=23 Score=31.26 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=27.2
Q ss_pred EEEEEeCCccceeccCeEEEEEeCCcccEEEEec--CCeEecCCcEEEEE
Q psy21 87 FVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFH--RTLKIEAGGTVTVW 134 (288)
Q Consensus 87 fV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp--~~~~L~~g~~vtIw 134 (288)
-|.|.|.+.......+ -+.-.+|| ..++|| ..++|.||++|||.
T Consensus 140 ~v~Ly~~~~~~~~~~~-~v~V~~DG---~~~~~~aG~~i~L~PGESiTl~ 185 (246)
T 3kmh_A 140 IVELWNADSNEQTADS-DITVVIDG---CRQKHTAGSQLRLSPGESICLP 185 (246)
T ss_dssp EEEEEEBCTTSSBCCS-CEEEEETT---EEEEECTTCEEEECTTCEEEEC
T ss_pred EEEEEecCCCccccCC-CeEEecCC---eEEEeCCCCEEEECCCCeEecC
Confidence 4577777644221122 34445565 456666 44689999999985
No 136
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=46.36 E-value=21 Score=29.65 Aligned_cols=12 Identities=42% Similarity=0.683 Sum_probs=9.5
Q ss_pred hhhHHHhhhhhh
Q psy21 268 DVEIAQYRNLME 279 (288)
Q Consensus 268 e~EIatYrkLLE 279 (288)
-.||+.|..|..
T Consensus 117 hyEIA~YgtL~a 128 (173)
T 2gyq_A 117 HYEIARYGTLIA 128 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999988864
No 137
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.23 E-value=35 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 205 DTEMNELRAANYRLTERNKELEDQIEYEQ 233 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le~~l~~~q 233 (288)
..++..|...+..|..++..|+.++..+.
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444333
No 138
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.04 E-value=90 Score=23.24 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=13.8
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q psy21 194 LKETKGRSGKYDTEMNELRAANYRLTERNKEL 225 (288)
Q Consensus 194 l~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~l 225 (288)
+..++.++..++.++..++..+..++..+..+
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444444444433
No 139
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=45.92 E-value=79 Score=23.81 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=15.7
Q ss_pred HHHhHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHH
Q psy21 186 EQSSLLLELKETKGRS-GKYDTEMNELRAANYRLTE 220 (288)
Q Consensus 186 ~~~~~~eEl~~~~~~~-~~l~~ei~~L~~~~~~Le~ 220 (288)
++...+..|..++... .+|+.||..|.+.++.|+.
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444443332 2355566666655555554
No 140
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.77 E-value=98 Score=29.97 Aligned_cols=25 Identities=4% Similarity=-0.001 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q psy21 228 QIEYEQSKFARMEAEIKRLQTEMTE 252 (288)
Q Consensus 228 ~l~~~q~~i~~le~el~~lr~~~~~ 252 (288)
++..+...|..++.++..+..++..
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 141
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=45.75 E-value=83 Score=22.82 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=8.8
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNK 223 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~ 223 (288)
+..+|..|...+..|+.++.
T Consensus 27 le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443
No 142
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=45.55 E-value=82 Score=23.47 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy21 224 ELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELM 261 (288)
Q Consensus 224 ~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL 261 (288)
++-.-|....+..-.|-+.++.+..++..+..+|-.+-
T Consensus 48 ~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~r 85 (93)
T 3t98_B 48 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYR 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666677888888888888877776543
No 143
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.50 E-value=1.7e+02 Score=27.59 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHH
Q psy21 190 LLLELKETKGRSGKYDTEMNELRAAN 215 (288)
Q Consensus 190 ~~eEl~~~~~~~~~l~~ei~~L~~~~ 215 (288)
...+|.....+++.+..++..|...+
T Consensus 39 ~l~~LE~~l~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 39 ELLEIEGLLQQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 144
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.23 E-value=54 Score=30.86 Aligned_cols=37 Identities=8% Similarity=-0.056 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhh
Q psy21 239 MEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYR 275 (288)
Q Consensus 239 le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYr 275 (288)
+|.+..+++.++.....+-+.|..-+.+|+.+|..+-
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 3444444444444444444444444444444444443
No 145
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=44.85 E-value=66 Score=21.35 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy21 223 KELEDQIEYEQSKFARMEAEIKRLQTEMT 251 (288)
Q Consensus 223 ~~le~~l~~~q~~i~~le~el~~lr~~~~ 251 (288)
......+..+...+..+.+.+..++.+|.
T Consensus 22 ~~~~~~~~~~k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 22 SLKTDEFLKAKEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444443
No 146
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.04 E-value=2e+02 Score=26.76 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=20.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy21 233 QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINL 267 (288)
Q Consensus 233 q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~L 267 (288)
...-.+++.++.++...++.....|+++.-.|..|
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 448 AEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence 33444556666666666666666666666555443
No 147
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.03 E-value=47 Score=31.34 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=12.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYE 232 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~ 232 (288)
|+.|+.+|+.++..|+..+..++.++...
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333
No 148
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.90 E-value=31 Score=25.32 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHHHhh
Q psy21 173 LANQERIIDNLRKEQSSLLLELKETKGRS 201 (288)
Q Consensus 173 vA~~~~~~~~~~~~~~~~~eEl~~~~~~~ 201 (288)
.+.|+..+..=...+...+..|+.+.=.+
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~ 35 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPEL 35 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 45555444422455556666666655443
No 149
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=43.27 E-value=98 Score=25.70 Aligned_cols=28 Identities=4% Similarity=0.136 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy21 228 QIEYEQSKFARMEAEIKRLQTEMTEQLK 255 (288)
Q Consensus 228 ~l~~~q~~i~~le~el~~lr~~~~~ql~ 255 (288)
.+..+...|..+..++...+.++..+++
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555655555543
No 150
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=42.21 E-value=95 Score=22.41 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy21 206 TEMNELRAANYRLTERNKEL 225 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~l 225 (288)
.|+..++....+++..+.++
T Consensus 51 ~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 51 GELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 151
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.74 E-value=98 Score=29.90 Aligned_cols=62 Identities=8% Similarity=-0.006 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy21 191 LLELKETKGRSGKYDTEMNELRAANYRLTERNKE----------LEDQIEYEQSKFARMEAEIKRLQTEMTE 252 (288)
Q Consensus 191 ~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~----------le~~l~~~q~~i~~le~el~~lr~~~~~ 252 (288)
.+++..+-.+...+..++++|++....+..++.. +..++..+...|..++.++..+..++..
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555554433 3334455556666666666666555543
No 152
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.40 E-value=1.4e+02 Score=23.96 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy21 173 LANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIK 244 (288)
Q Consensus 173 vA~~~~~~~~~~~~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~ 244 (288)
+|........++..+...++|+.....-+..-+..++.|++++..-+.+|..|.+++...|..+...+..|.
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 666544444445555555556555444444445566666666666666666555555545444444444333
No 153
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=41.26 E-value=46 Score=25.85 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=42.1
Q ss_pred CCcEEEEEeCCccceeccC--------eEEEEEeCCc----ccEEEEecCCeEecCCcEEEEEecccCCCCCCCCCceee
Q psy21 84 DGKFVKLYNKGSEEQSLGN--------WQLVRKVQGE----VKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHNIVM 151 (288)
Q Consensus 84 ~GkfV~l~N~s~~~~~L~g--------w~l~r~v~~~----~~~~y~Fp~~~~L~~g~~vtIwa~~~~~~~~~pp~dlv~ 151 (288)
-+-|..|.|+++++..|-| -.|-..+..+ ....-+--+++.|+||++|..=- |.. .-..+
T Consensus 16 ~a~y~ti~N~g~~~~~Lv~v~S~~a~~velH~~~~~~~~~~gvm~M~~v~~i~ipag~~v~l~P----GG~----HvML~ 87 (120)
T 2k6w_A 16 AAAYLTLENPGDLPLRLVGARTPVAERVELHETFMREVEGKKVMGMRPVPFLEVPPKGRVELKP----GGY----HFMLL 87 (120)
T ss_dssp EEECEEEECCSSSCEEEEECCCSSEEEEEEEEEEEEESSSSEEEEEEECSCEEECTTCEEEECT----TTE----EEEEE
T ss_pred EEEEEEEEeCCCCCcEEEEEECCCCCcEEEEEEEecCCccCCeeEEEEcCcEeECCCCEEeccC----Cce----EEEEe
Confidence 3457788888776654432 2333322111 11122222468899999887611 111 12334
Q ss_pred ecc-cccCccchhhheeccchh
Q psy21 152 KNQ-KFGSGDEISTILLNTDGE 172 (288)
Q Consensus 152 ~~~-~wg~g~~i~t~L~d~~ge 172 (288)
+-. .+-.|+.+..+|.=.++.
T Consensus 88 gl~~~l~~G~~v~ltL~Fe~~~ 109 (120)
T 2k6w_A 88 GLKRPLKAGEEVELDLLFAGGK 109 (120)
T ss_dssp EESSCBCTTCEEEEEEEETTTE
T ss_pred CCCCCCCCCCEEEEEEEECCCC
Confidence 433 667777776666655543
No 154
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=41.01 E-value=34 Score=19.37 Aligned_cols=7 Identities=57% Similarity=0.733 Sum_probs=3.2
Q ss_pred hhhhHHH
Q psy21 267 LDVEIAQ 273 (288)
Q Consensus 267 Le~EIat 273 (288)
|+.||++
T Consensus 19 leyeiaa 25 (28)
T 3ra3_B 19 LEYEIAA 25 (28)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 155
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.91 E-value=41 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q psy21 220 ERNKELEDQIEYEQSKFARMEAEI 243 (288)
Q Consensus 220 ~~l~~le~~l~~~q~~i~~le~el 243 (288)
..+.+||..|....+.|..|..+|
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 156
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=40.05 E-value=48 Score=20.27 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy21 215 NYRLTERNKE 224 (288)
Q Consensus 215 ~~~Le~~l~~ 224 (288)
++..+..|.+
T Consensus 9 n~a~qqDIdd 18 (34)
T 1a93_B 9 NDTHQQDIDD 18 (34)
T ss_dssp HHHHHHHHHH
T ss_pred hHhhHhhHHH
Confidence 3333333333
No 157
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.26 E-value=1.1e+02 Score=29.03 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy21 191 LLELKETKGRSGKYDTEMNELRAANYRLTERNKE----------LEDQIEYEQSKFARMEAEIKRLQTEMTE 252 (288)
Q Consensus 191 ~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~----------le~~l~~~q~~i~~le~el~~lr~~~~~ 252 (288)
.+++..+-.+...+..+++.|++....+..++.. +..++..+...|..++.++..+..++..
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555666666666555555543 3334445566666666666666655544
No 158
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.86 E-value=1.3e+02 Score=23.08 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=16.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy21 229 IEYEQSKFARMEAEIKRLQTEMTEQLKDYRELM 261 (288)
Q Consensus 229 l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL 261 (288)
+..+...+..++..+..++..+......-+.++
T Consensus 97 ~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 97 KNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555444444443
No 159
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=38.41 E-value=1.1e+02 Score=22.16 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Q psy21 173 LANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTE 220 (288)
Q Consensus 173 vA~~~~~~~~~~~~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~ 220 (288)
+|.+.++ .+..+.+|...+..++..++.+|..|+..+..|..
T Consensus 21 lAE~RR~------AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 21 VAEQRRK------ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666443 45567778888777776666776666666555443
No 160
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.20 E-value=35 Score=27.27 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=29.2
Q ss_pred cEEEEEeCCccceeccCeEEEEEeCCcccEEEEe-cCCeEecCCcEEEEE
Q psy21 86 KFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKF-HRTLKIEAGGTVTVW 134 (288)
Q Consensus 86 kfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~F-p~~~~L~~g~~vtIw 134 (288)
..|+|.|.++..+ .|+|+-+... .|.. |+.=+|.||.++.|-
T Consensus 35 ~~l~L~N~s~~~V---aFKVKTT~p~----~y~VrP~~GiI~P~~s~~v~ 77 (147)
T 2cri_A 35 TNLKLQNPSDRKV---CFKVKTTAPR----RYCVRPNSGIIDPGSIVTVS 77 (147)
T ss_dssp EEEEEECCSSSCE---EEEEEESCTT----SEEEESSEEECCTTCEEEEE
T ss_pred EEEEEECCCCCcE---EEEEECCCCc----cEEEcCCCcEECCCCeEEEE
Confidence 5799999998665 5788766442 4544 444599999886653
No 161
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.08 E-value=82 Score=20.51 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy21 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEA 241 (288)
Q Consensus 207 ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~ 241 (288)
|-..|..-+.+|+.....+|..++.+...|+.||.
T Consensus 18 enaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 33445555566666655555555555545554443
No 162
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.36 E-value=1.8e+02 Score=28.09 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q psy21 191 LLELKETKGRSGKYDTEMNELRAANYRLTERNKEL 225 (288)
Q Consensus 191 ~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~l 225 (288)
.+++..+-.+...+..++++|++....+..++..+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666666666666666665543
No 163
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.16 E-value=79 Score=20.06 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=10.9
Q ss_pred hhhhhhHHHhhhhhh
Q psy21 265 INLDVEIAQYRNLME 279 (288)
Q Consensus 265 l~Le~EIatYrkLLE 279 (288)
.-|+.|||..|+-+|
T Consensus 34 aylekeianlrkkie 48 (49)
T 3he5_A 34 AYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 357888888887654
No 164
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.73 E-value=32 Score=31.50 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=11.6
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q psy21 192 LELKETKGRSGKYDTEMNELRAANYRLTERNKE 224 (288)
Q Consensus 192 eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~ 224 (288)
+|+.++..++..++.+|..|+..+..++.+|++
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~ 36 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVN 36 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333333
No 165
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=36.69 E-value=58 Score=25.53 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHhhh
Q psy21 204 YDTEMNELRAANYRLTERNKELED-----QIEYEQSKFARMEAEIKRLQTEMTEQL-KDYRELMEI 263 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~-----~l~~~q~~i~~le~el~~lr~~~~~ql-~eyq~LL~v 263 (288)
++.||+.|..+++.+...+..+.. -+..+...+..|..+|.+++..-...+ .+-+.|.+.
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~l 73 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKM 73 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence 345566666666665555543322 234455556666666666666544442 345555553
No 166
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=36.48 E-value=2.6e+02 Score=26.91 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=9.8
Q ss_pred ccc----Cccchhhheeccch
Q psy21 155 KFG----SGDEISTILLNTDG 171 (288)
Q Consensus 155 ~wg----~g~~i~t~L~d~~g 171 (288)
.|| +|+.+...|..++-
T Consensus 41 DwGvkCPSGCrLqglL~kqer 61 (491)
T 1m1j_A 41 DWGTKCPSGCRMQGIIDDTDQ 61 (491)
T ss_dssp STTTEECCSTTHHHHHHHHHH
T ss_pred cccCCCCCccchhhHHHHhhh
Confidence 565 57777666544433
No 167
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.41 E-value=83 Score=20.08 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy21 211 LRAANYRLTERNKELEDQIEYEQSKFARMEA 241 (288)
Q Consensus 211 L~~~~~~Le~~l~~le~~l~~~q~~i~~le~ 241 (288)
|-..++..-++|+..+.++..+|.++..||+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555443
No 168
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.30 E-value=93 Score=20.62 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYEQSKF 236 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i 236 (288)
++.++..|-+++..|...+.+...++..+...+
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454455555554444444444444433
No 169
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=36.17 E-value=1.5e+02 Score=22.91 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEY 231 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~ 231 (288)
.+.+++.|..+++.-+..|.++...+..
T Consensus 43 ~k~qV~~L~~~~q~sE~~L~~Lqq~fsq 70 (112)
T 1x79_B 43 SSHQISALVLRAQASEILLEELQQGLSQ 70 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544433
No 170
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.84 E-value=38 Score=29.95 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy21 222 NKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYREL 260 (288)
Q Consensus 222 l~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~L 260 (288)
+.+++.++..+..+...|..+|..++.++.+...|.+.|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444443333
No 171
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=35.57 E-value=1.8e+02 Score=25.04 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=23.2
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy21 200 RSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250 (288)
Q Consensus 200 ~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~ 250 (288)
++..++.++.+-+.+|-.-+..|..++-++......|..|+..++.+...+
T Consensus 85 rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 85 RIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
Confidence 333444555555555544444555555444444444444444444443333
No 172
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.52 E-value=1.3e+02 Score=28.19 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy21 210 ELRAANYRLTERNKELEDQIEYEQSKFARMEAE 242 (288)
Q Consensus 210 ~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~e 242 (288)
.|...+..|..++.+++..+...++.+..+.++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333333333
No 173
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.11 E-value=46 Score=24.07 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYE 232 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~ 232 (288)
+..++..|...+..|..++..|+.++..+
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444433
No 174
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=34.95 E-value=14 Score=22.93 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 206 TEMNELRAANYRLTERNKELEDQIEYEQSKF 236 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i 236 (288)
+.+..+++.++.|+.++..++.++...+..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777776666665555443
No 175
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=34.88 E-value=3.2e+02 Score=26.41 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhhh
Q psy21 205 DTEMNELRAANYRLTERNKELEDQI----EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le~~l----~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLLE 279 (288)
+..+.+.++.+..++++++.++.+- +.+.+.+...+.+|+.-..+ +.+|+. -+.+-+.+.+.|.+-|.
T Consensus 33 e~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~----~AeY~~---kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 33 EAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD----LADYPV---KLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444322 23333444444444444333 334433 22233445566666664
No 176
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=34.31 E-value=48 Score=26.71 Aligned_cols=42 Identities=7% Similarity=0.217 Sum_probs=28.6
Q ss_pred cEEEEEeCCccceeccCeEEEEEeCCcccEEEEe-cCCeEecCCcEEEEE
Q psy21 86 KFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKF-HRTLKIEAGGTVTVW 134 (288)
Q Consensus 86 kfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~F-p~~~~L~~g~~vtIw 134 (288)
..++|.|.++..+ -|+++-+... .|.. |+.=+|.||.++.|-
T Consensus 39 ~~l~L~N~s~~~V---aFKVKTT~p~----~y~VrP~~GiI~P~~s~~V~ 81 (152)
T 1wic_A 39 TLIVLTNVTKNIV---AFKVRTTAPE----KYRVKPSNSSCDPGASIDII 81 (152)
T ss_dssp EEEEEEBCSSSCE---EEEEEESCTT----TEEEESSEEEECTTCEEEEE
T ss_pred EEEEEEcCCCCeE---EEEEECCCCC----ceeecCCCcEECCCCeEEEE
Confidence 4899999998655 5778765432 4544 444489999886553
No 177
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=34.29 E-value=1.4e+02 Score=22.12 Aligned_cols=7 Identities=57% Similarity=0.800 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy21 240 EAEIKRL 246 (288)
Q Consensus 240 e~el~~l 246 (288)
+.+...+
T Consensus 45 e~E~~~L 51 (96)
T 3q8t_A 45 QAEAERL 51 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 178
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=33.12 E-value=1.8e+02 Score=22.85 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy21 191 LLELKET 197 (288)
Q Consensus 191 ~eEl~~~ 197 (288)
.++++..
T Consensus 62 L~eIk~~ 68 (142)
T 3gp4_A 62 IEALIDY 68 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 179
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=32.80 E-value=3.4e+02 Score=26.07 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhhhhhc
Q psy21 224 ELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEA 280 (288)
Q Consensus 224 ~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EIatYrkLLEg 280 (288)
+|+.++..++.+|..-=..|..|+..+..|+.+-|. ||.-|.+=.+..-|
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQR-------LE~dI~~q~~~Cr~ 164 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKR-------LEVDIDIKIRACKG 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcc
Confidence 344444444444433225555566666655554443 55555554444433
No 180
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=32.77 E-value=1.2e+02 Score=20.80 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy21 211 LRAANYRLTERNKELEDQIEYEQSKFARMEAEIKR 245 (288)
Q Consensus 211 L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~ 245 (288)
+++.+..+..+++.+..+....+..|..|+..+.+
T Consensus 25 l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~ 59 (65)
T 3m0d_C 25 LNKEVEASHLALATSIHQSQLDRERILSLEQRVVE 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333333333333333333335555555544443
No 181
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=32.57 E-value=2.5e+02 Score=24.52 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMT 251 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~~ 251 (288)
...||.++-..|+.|...-+-+..+|+.++..=..||.+|..++..+.
T Consensus 175 a~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 175 TLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 456777777777777766555666666655555556666665555543
No 182
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=32.12 E-value=1.2e+02 Score=20.77 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy21 205 DTEMNELRAANYRLTERNKEL 225 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~l 225 (288)
+.+|+.|-+-++.|..+++-+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~m 46 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKL 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHH
Confidence 334444444444444444433
No 183
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.98 E-value=1.7e+02 Score=28.90 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhh
Q psy21 206 TEMNELRAANYRLTERNKELEDQIEY----EQSKFARMEAEIKR----LQTEMTEQLKDYRELMEIKINLD 268 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~le~~l~~----~q~~i~~le~el~~----lr~~~~~ql~eyq~LL~vKl~Le 268 (288)
.+|.+-+.+...++.+.+.++..... +.++-..+++.+.+ |..+....++|.+..|+-|+.-.
T Consensus 487 k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~ 557 (592)
T 1f5n_A 487 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 557 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555544433322111 11222223333333 44555666778888888877643
No 184
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=31.93 E-value=1.7e+02 Score=22.45 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Q psy21 191 LLELKETKGRSGKYDTEMNELRAANYRLTE 220 (288)
Q Consensus 191 ~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~ 220 (288)
..|+..++.....+...|-+|...++-|++
T Consensus 41 q~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 41 EDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 333334443333334444444444444433
No 185
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=31.81 E-value=23 Score=32.48 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy21 211 LRAANYRLTERNKELEDQIEYEQSKFARMEAEI 243 (288)
Q Consensus 211 L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el 243 (288)
|+.++..++.++..|+..+...+.+|..|+..+
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i 41 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKV 41 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444433333344444443333
No 186
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=31.55 E-value=32 Score=28.36 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=9.8
Q ss_pred hhhHHHhhhhhh
Q psy21 268 DVEIAQYRNLME 279 (288)
Q Consensus 268 e~EIatYrkLLE 279 (288)
-.||+.|..|..
T Consensus 111 hyEIA~YgtL~a 122 (166)
T 2gs4_A 111 HYEIASYGTLAT 122 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999998864
No 187
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=31.24 E-value=46 Score=23.99 Aligned_cols=14 Identities=21% Similarity=-0.002 Sum_probs=6.1
Q ss_pred hHHHhHHHHHHHHH
Q psy21 185 KEQSSLLLELKETK 198 (288)
Q Consensus 185 ~~~~~~~eEl~~~~ 198 (288)
..+...+..|+.+.
T Consensus 14 ~~lk~~f~~Lr~~v 27 (80)
T 1nlw_A 14 AHLRLSLEKLKGLV 27 (80)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHc
Confidence 33444444444443
No 188
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.81 E-value=1.5e+02 Score=21.26 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy21 209 NELRAANYRLT 219 (288)
Q Consensus 209 ~~L~~~~~~Le 219 (288)
..|...+..|+
T Consensus 10 ~~LE~sld~LQ 20 (74)
T 3swf_A 10 TRMESSVDLLQ 20 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 189
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.63 E-value=63 Score=19.61 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=16.5
Q ss_pred HHHHhhhhhhhhhhHHHhhhhhh
Q psy21 257 YRELMEIKINLDVEIAQYRNLME 279 (288)
Q Consensus 257 yq~LL~vKl~Le~EIatYrkLLE 279 (288)
-.+||.-|-.|+.|++-.+.||-
T Consensus 10 VEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 10 LEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh
Confidence 45677777777777777777764
No 190
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=30.17 E-value=77 Score=24.07 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=29.9
Q ss_pred cEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCe-EecCCcEEEEE
Q psy21 86 KFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTL-KIEAGGTVTVW 134 (288)
Q Consensus 86 kfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~-~L~~g~~vtIw 134 (288)
..++|.|.+++.+. ++++-... ..|+.-|.+ .++||.++.|-
T Consensus 19 ~~l~L~N~t~~~va---FKVKtT~p----~~y~VrP~~G~I~P~~~~~i~ 61 (109)
T 1row_A 19 STHKLVNGGAEKIV---FKIKSSNN----NEYRIAPVFGFVDPSGSKDVV 61 (109)
T ss_dssp EEEEEEECSSSCEE---EEEEESCS----SSEEEECSEEEECTTEEEEEE
T ss_pred EEEEEEcCCCCeEE---EEEEeCCC----CceEEcCCceEECCCCeEEEE
Confidence 58999999988764 46664432 468777766 88999885543
No 191
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.02 E-value=43 Score=23.09 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy21 207 EMNELRAANYRLT 219 (288)
Q Consensus 207 ei~~L~~~~~~Le 219 (288)
++..|...+..|.
T Consensus 38 ~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 38 KVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 192
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.78 E-value=1.3e+02 Score=28.27 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=29.3
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy21 192 LELKETKGRSGKYDTEMNELRAANYRLTERNK--------ELEDQIEYEQSKFARMEAEIKRLQTEMTE 252 (288)
Q Consensus 192 eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~--------~le~~l~~~q~~i~~le~el~~lr~~~~~ 252 (288)
+++..+-.+...+..+++.|++....+..++. ++..++..+...|..++.++..+..++..
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444455555555444444332 23334445555566666666655555543
No 193
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=29.53 E-value=1.2e+02 Score=19.94 Aligned_cols=17 Identities=0% Similarity=0.262 Sum_probs=10.2
Q ss_pred HHHHHhhHHHHHHHHHH
Q psy21 232 EQSKFARMEAEIKRLQT 248 (288)
Q Consensus 232 ~q~~i~~le~el~~lr~ 248 (288)
|+.+|..++.+|+.++.
T Consensus 30 Y~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 30 FRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 56666666666665543
No 194
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=29.37 E-value=27 Score=29.07 Aligned_cols=11 Identities=45% Similarity=0.697 Sum_probs=8.9
Q ss_pred hhHHHhhhhhh
Q psy21 269 VEIAQYRNLME 279 (288)
Q Consensus 269 ~EIatYrkLLE 279 (288)
.|||.|..|..
T Consensus 109 yEIA~YgtL~a 119 (171)
T 3ogh_B 109 FEIACYTSLLA 119 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68999998863
No 195
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=29.20 E-value=2.2e+02 Score=26.80 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=17.1
Q ss_pred eEEEeecCCCcEE-EEEeCCcccee
Q psy21 76 MEITEVDPDGKFV-KLYNKGSEEQS 99 (288)
Q Consensus 76 v~I~e~d~~GkfV-~l~N~s~~~~~ 99 (288)
-.++=.+|||++| ++.|.++.++.
T Consensus 394 ~~~Af~~pdg~~vvVv~N~~~~~~~ 418 (447)
T 2wnw_A 394 EEVGFVNPDGERVLVVYNRDVQERR 418 (447)
T ss_dssp EEEEEECTTSCEEEEEEECSSSCEE
T ss_pred EEEEEECCCCCEEEEEEeCCCCCEE
Confidence 3455678999986 45788877764
No 196
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=28.82 E-value=2.2e+02 Score=22.74 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy21 198 KGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250 (288)
Q Consensus 198 ~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~ 250 (288)
+....+......+..+.+..++..|...+.+......++..|+.+|..+-..|
T Consensus 65 k~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 65 KHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444455555555555555555555555666666666666555444
No 197
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.81 E-value=39 Score=29.72 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=15.7
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229 (288)
Q Consensus 193 El~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l 229 (288)
...+...+.+++..++..|...++.++.+|+.++.++
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555554444443
No 198
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.77 E-value=1.4e+02 Score=19.89 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy21 207 EMNELRAANYRLTE 220 (288)
Q Consensus 207 ei~~L~~~~~~Le~ 220 (288)
+++.|..++++|..
T Consensus 12 ~V~~L~~kVdqLss 25 (52)
T 1jcd_A 12 DAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 199
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=27.74 E-value=77 Score=19.13 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=16.0
Q ss_pred HHHHhhhhhhhhhhHHHhhhhhh
Q psy21 257 YRELMEIKINLDVEIAQYRNLME 279 (288)
Q Consensus 257 yq~LL~vKl~Le~EIatYrkLLE 279 (288)
-.+||.-|-.|+.|++-.+.||-
T Consensus 9 vEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc
Confidence 45677777777777777777664
No 200
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=27.68 E-value=91 Score=24.10 Aligned_cols=42 Identities=5% Similarity=0.143 Sum_probs=29.1
Q ss_pred cEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCe-EecCCcEEEEE
Q psy21 86 KFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTL-KIEAGGTVTVW 134 (288)
Q Consensus 86 kfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~-~L~~g~~vtIw 134 (288)
..++|.|.+++.+. ++|+-.-. ..|+.-|.+ .++||.++.|.
T Consensus 27 ~~l~L~N~t~~~vA---FKVKtT~p----~~YrVrP~~G~I~Pg~~~~I~ 69 (116)
T 1m1s_A 27 STHNITSESDSRLA---FKVKSSNN----EHYRVRPVYGFVDAKGKSKLD 69 (116)
T ss_dssp EEEEEEECSSSEEE---EEEEESCT----TTEEEECSEEEECTTCEEEEE
T ss_pred EEEEEECCCCCeEE---EEEEecCC----CceEEcCCceEECCCCeEEEE
Confidence 47899999988764 46664422 368777766 78999885443
No 201
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=27.64 E-value=79 Score=23.51 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy21 205 DTEMNELRAANYRLTERNKE 224 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~ 224 (288)
+.+...|...+..|..++..
T Consensus 54 E~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 202
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.60 E-value=2.6e+02 Score=23.87 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=19.8
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229 (288)
Q Consensus 193 El~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l 229 (288)
|+..+..++..++.++.+++....++.+...++..+.
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555566666666666666555554433
No 203
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.46 E-value=81 Score=19.04 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=16.3
Q ss_pred HHHHhhhhhhhhhhHHHhhhhhh
Q psy21 257 YRELMEIKINLDVEIAQYRNLME 279 (288)
Q Consensus 257 yq~LL~vKl~Le~EIatYrkLLE 279 (288)
-.+|+.-|..|+.||+-.+.||-
T Consensus 9 VEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 9 IEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc
Confidence 35677777777777777777764
No 204
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.28 E-value=2.9e+02 Score=23.49 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=12.3
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy21 196 ETKGRSGKYDTEMNELRAANYRLTERNKELED 227 (288)
Q Consensus 196 ~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~ 227 (288)
.+..+++.++.+++.|..++..+-..-.++|.
T Consensus 143 ~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~ 174 (213)
T 1ik9_A 143 HLQKENERLLRDWNDVQGRFEKAVSAKEALET 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333333333333443
No 205
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=27.25 E-value=2.4e+02 Score=22.51 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=48.5
Q ss_pred cccCccchhhheeccchh-HHHHHHHHhhhhhHHHhHHHHHHHHHHhhCC----------chhHHHHHHHHHHHHHHHHH
Q psy21 155 KFGSGDEISTILLNTDGE-LANQERIIDNLRKEQSSLLLELKETKGRSGK----------YDTEMNELRAANYRLTERNK 223 (288)
Q Consensus 155 ~wg~g~~i~t~L~d~~ge-vA~~~~~~~~~~~~~~~~~eEl~~~~~~~~~----------l~~ei~~L~~~~~~Le~~l~ 223 (288)
+|.+-.....-|.-.|.- +..++.+.....+.+..+.+....++.+..+ ....++++...|-.+...+.
T Consensus 28 ~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~ 107 (136)
T 3ter_A 28 GSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRME 107 (136)
T ss_dssp -CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHH
Confidence 455555555555555555 7777766665567777888888888776433 23778888888877777776
Q ss_pred HHHHHHH
Q psy21 224 ELEDQIE 230 (288)
Q Consensus 224 ~le~~l~ 230 (288)
++...+.
T Consensus 108 evt~~l~ 114 (136)
T 3ter_A 108 KIHTLTR 114 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 206
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=27.22 E-value=1.3e+02 Score=28.71 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=33.9
Q ss_pred EEEEeCCccceeccCeEEEEEeCCccc-------------EEEEecC---CeEecC-CcEEEEEecccCCCCCCCCCcee
Q psy21 88 VKLYNKGSEEQSLGNWQLVRKVQGEVK-------------TSFKFHR---TLKIEA-GGTVTVWSFNVEGATHEPPHNIV 150 (288)
Q Consensus 88 V~l~N~s~~~~~L~gw~l~r~v~~~~~-------------~~y~Fp~---~~~L~~-g~~vtIwa~~~~~~~~~pp~dlv 150 (288)
|.|.|++... +.||+|.-...++.. ..|++.+ +-.|.| |+++++--.+...+...+|+.+.
T Consensus 401 v~v~n~~~~~--~~~W~~~~~~~~~~~i~~~wn~~~~~~g~~~~~~~~~~n~~~~~~g~s~~~gf~~~~~g~~~~p~~~~ 478 (515)
T 3icg_A 401 VTIKNNGTTP--INGWTLKWTMPINQTITNMWSASFVASGTTLSVTNAGYNGTIAANGGTQSFGFNINYSGVLSKPTGFT 478 (515)
T ss_dssp EEEEECSSSC--EESCEEEEECCTTEEEEEEESEEEEEETTEEEEEECSTTCEECTTTEEEEEEEEEEECSSCCCCSCCE
T ss_pred EEEEeCCCCC--cCCeEEEEEeCCCCEeeccccceEEecCCeEEEecCccccccCCCCceEEEEEEEeCCCCCCCCceEE
Confidence 6799999764 679999876543221 1233322 236777 77777753332112234556554
No 207
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.78 E-value=1.4e+02 Score=26.49 Aligned_cols=11 Identities=36% Similarity=0.135 Sum_probs=5.4
Q ss_pred cCCcEEEEEec
Q psy21 126 EAGGTVTVWSF 136 (288)
Q Consensus 126 ~~g~~vtIwa~ 136 (288)
.|...+.|.+.
T Consensus 28 ~~~~~~~v~~~ 38 (369)
T 4dk0_A 28 ESINTVDVGAQ 38 (369)
T ss_dssp ECSSCCCBCCC
T ss_pred EeeeeEEEecC
Confidence 35555555443
No 208
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form, structural proteomics in europe, spine, structur genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1 PDB: 2jqa_A
Probab=26.66 E-value=49 Score=26.76 Aligned_cols=80 Identities=24% Similarity=0.300 Sum_probs=41.3
Q ss_pred CCcEEEEEeCCccceeccC--------eEEEEEeCCcccEEEEecCCeEecCCcEEEEEecccCCCCCCCCCceeeecc-
Q psy21 84 DGKFVKLYNKGSEEQSLGN--------WQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQ- 154 (288)
Q Consensus 84 ~GkfV~l~N~s~~~~~L~g--------w~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtIwa~~~~~~~~~pp~dlv~~~~- 154 (288)
-+-|..|.|+++++..|-| -.|-..+..+..-.-+--+++.|+||++|.. .- |. ..-.+++-.
T Consensus 45 ~a~y~ti~N~g~~~d~Lv~vsS~~a~~velH~~~~~~Gvm~M~~v~~i~IPag~~v~L-~P---GG----~HvML~gL~~ 116 (149)
T 1x9l_A 45 TAAYMTLTNKSDQPIKLVGAATPLATSPMLMTTTHSGGMAGMKMVPWLTIPARGTLTL-QR---DG----DHVMLMGLKR 116 (149)
T ss_dssp CCEEEECCCBSCCEEEECCCBCSSEEEEEEEEESTTSSCEECSCCSCEEEESCCCCEE-CT---TS----SEEEEEEECS
T ss_pred EEEEEEEEeCCCCCcEEEEEECCCCCcEEEEEEEccCCeEEEEEcCcEEECCCCeEec-cC---Cc----eEEEEeCCCC
Confidence 4579999999987766654 2333332211111111123677888877765 11 11 122233333
Q ss_pred cccCccchhhheeccch
Q psy21 155 KFGSGDEISTILLNTDG 171 (288)
Q Consensus 155 ~wg~g~~i~t~L~d~~g 171 (288)
.+-.|+.+..+|.=.+|
T Consensus 117 ~l~~G~~v~lTL~Fe~~ 133 (149)
T 1x9l_A 117 PLKVGETVNITLKATDG 133 (149)
T ss_dssp CCCTTEEEEEEECBTTT
T ss_pred CCCCCCEEEEEEEECCC
Confidence 56666666666654444
No 209
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=26.38 E-value=3.4 Score=32.10 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy21 223 KELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELM 261 (288)
Q Consensus 223 ~~le~~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL 261 (288)
.+||.++..++..+..|..+...++.++...-..|+.|.
T Consensus 61 ~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 61 EELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555444555444
No 210
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=26.18 E-value=3.2e+02 Score=23.70 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=12.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q psy21 203 KYDTEMNELRAANYRLTERNKELE 226 (288)
Q Consensus 203 ~l~~ei~~L~~~~~~Le~~l~~le 226 (288)
+.+..++..+...+.|..+|..++
T Consensus 101 ~~E~svqp~R~~R~~l~~~I~kLk 124 (234)
T 3plt_A 101 NIEASVQPSRDRKEKITDEIAHLK 124 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHh
Confidence 344555555555555555554433
No 211
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=26.11 E-value=83 Score=32.65 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=29.9
Q ss_pred EEEEEeCCccceeccCeEEEEEe-------CCcc-cE------EEEe-c-CCe-EecCCcEEEEE
Q psy21 87 FVKLYNKGSEEQSLGNWQLVRKV-------QGEV-KT------SFKF-H-RTL-KIEAGGTVTVW 134 (288)
Q Consensus 87 fV~l~N~s~~~~~L~gw~l~r~v-------~~~~-~~------~y~F-p-~~~-~L~~g~~vtIw 134 (288)
-+.|+|.| .++++.||.|--.. ++.. .+ -|+| | .+| .|+||++++|=
T Consensus 43 ~~tl~n~~-~~~~~~~w~iyf~~~r~i~~~~~~~~~i~~~~gd~~~l~P~~~f~~~~~g~~~~~~ 106 (858)
T 1c7s_A 43 LFTLSNDG-QAIDGKDWVIYFHSPRQTLRVDNDQFKIAHLTGDLYKLEPTAKFSGFPAGKAVEIP 106 (858)
T ss_dssp EEEEEECS-SCBCCCCCEEEEECSSCEEEECSTTEEEEECSTTEEEEEECTTCCCBCTTEEEEEE
T ss_pred EEEEEcCC-CCcCCCCcEEEEecceeeecCCCCCeeEEEEeCeEEEEecCCCCCccCCCCEEEEE
Confidence 36678887 77788888775432 1111 11 2666 4 788 69999998763
No 212
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.00 E-value=1.8e+02 Score=20.76 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhhH
Q psy21 225 LEDQIEYEQSKFARM 239 (288)
Q Consensus 225 le~~l~~~q~~i~~l 239 (288)
++..|..+|.++++|
T Consensus 12 LE~sld~LQTrfARL 26 (74)
T 3swf_A 12 MESSVDLLQTRFARI 26 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 213
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.97 E-value=2.2e+02 Score=21.72 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Q psy21 191 LLELKETKGRSGKYDTEMNELRAANYRLTE 220 (288)
Q Consensus 191 ~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~ 220 (288)
..|+...+.++..|..++++|+-++..|+.
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 214
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.87 E-value=1.8e+02 Score=20.58 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy21 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRE 259 (288)
Q Consensus 228 ~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~ 259 (288)
....+...+..+...|..+...+......|++
T Consensus 56 ~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 87 (98)
T 3gwk_C 56 QFNELSPKITEFAQLLEDINQQLLKVADIIEQ 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555544
No 215
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=25.39 E-value=3.1e+02 Score=23.17 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy21 207 EMNELRAANYRLTERNKELED 227 (288)
Q Consensus 207 ei~~L~~~~~~Le~~l~~le~ 227 (288)
++.+++.....|..++..+..
T Consensus 152 elA~le~~~~~L~~eIkkT~R 172 (217)
T 3aon_A 152 KLAEVEKTCQLMAEEIEKTRR 172 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 333444444444444444433
No 216
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=25.21 E-value=82 Score=24.20 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=28.8
Q ss_pred cEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCeEecCCcEEEEE
Q psy21 86 KFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVW 134 (288)
Q Consensus 86 kfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtIw 134 (288)
..|+|.|.++..+ .|+++-+.. ..-+--|+.=+|.||.++.|-
T Consensus 31 ~~l~L~N~s~~~v---aFKVKTT~p---~~y~VrP~~G~i~P~~s~~v~ 73 (128)
T 1z9l_A 31 TNLKLQNPSDRKV---CFKVKTTAP---RRYCVRPNSGVIDPGSIVTVS 73 (128)
T ss_dssp EEEEEECCSSSCE---EEEEEESCG---GGEEEESCEEEECTTCEEEEE
T ss_pred EEEEEECCCCCeE---EEEEECCCC---CceEEeCCCcEECCCCeEEEE
Confidence 4799999998655 577875533 233344454599999886654
No 217
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.15 E-value=63 Score=19.66 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=16.6
Q ss_pred HHHHhhhhhhhhhhHHHhhhhhh
Q psy21 257 YRELMEIKINLDVEIAQYRNLME 279 (288)
Q Consensus 257 yq~LL~vKl~Le~EIatYrkLLE 279 (288)
-.+||.-|..|+.|++-.+.||.
T Consensus 10 VEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 10 GEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHc
Confidence 45677777777778777777764
No 218
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.09 E-value=1.2e+02 Score=21.58 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHHH
Q psy21 206 TEMNELRAANYRL 218 (288)
Q Consensus 206 ~ei~~L~~~~~~L 218 (288)
.+++.|+..+..|
T Consensus 61 ~e~~~L~~~~~~L 73 (83)
T 1nkp_B 61 QDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 219
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=25.01 E-value=64 Score=24.80 Aligned_cols=55 Identities=7% Similarity=-0.065 Sum_probs=33.2
Q ss_pred eccCeEEEEEeCCcccEEEEecCCeEecCCcEEEEEecccCCCCCC-CCCceeeecc
Q psy21 99 SLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHE-PPHNIVMKNQ 154 (288)
Q Consensus 99 ~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtIwa~~~~~~~~~-pp~dlv~~~~ 154 (288)
.|-|+++.-..-++.....+.|++-+.++|+.++|-+.|. -.... ..+||+-.-.
T Consensus 20 AllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gm-p~~~~~~~GDL~V~~~ 75 (121)
T 1xao_A 20 AIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGM-PIPKYGGYGNLIIKFT 75 (121)
T ss_dssp HHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSC-C------CCCEEEEEE
T ss_pred HhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCC-CCCCCCCCCCEEEEEE
Confidence 3445665444322345678899988899999999977665 11111 2467765444
No 220
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.99 E-value=1.8e+02 Score=26.00 Aligned_cols=11 Identities=9% Similarity=0.108 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy21 211 LRAANYRLTER 221 (288)
Q Consensus 211 L~~~~~~Le~~ 221 (288)
|+.+++.|+..
T Consensus 231 l~~~i~~l~~~ 241 (357)
T 3rrk_A 231 MKERARLAPEE 241 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 221
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.98 E-value=1.3e+02 Score=26.26 Aligned_cols=20 Identities=40% Similarity=0.488 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy21 210 ELRAANYRLTERNKELEDQI 229 (288)
Q Consensus 210 ~L~~~~~~Le~~l~~le~~l 229 (288)
+|++.++.++..+.+++.++
T Consensus 3 ~lnsRvd~~EErIs~le~rl 22 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEI 22 (233)
T ss_dssp ----CHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 222
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.93 E-value=98 Score=25.07 Aligned_cols=93 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHHHHHHhh------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy21 183 LRKEQSSLLLELKETKGRS------------GKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250 (288)
Q Consensus 183 ~~~~~~~~~eEl~~~~~~~------------~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~ 250 (288)
.....+..-++.+...... +++...+...+.....++..++.++..+..+.+....|+.+.+-..+.-
T Consensus 38 le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASR 117 (146)
T 2xnx_M 38 KELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASR 117 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC----
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhh
Q psy21 251 TEQLKDYRELMEIKINLDVEIAQYR 275 (288)
Q Consensus 251 ~~ql~eyq~LL~vKl~Le~EIatYr 275 (288)
....+++......|-.|+.+.+...
T Consensus 118 qgLrRDLeASReAKKqlEadl~~~~ 142 (146)
T 2xnx_M 118 QSLRRDLDASREAKKQVEKDLLEHH 142 (146)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
No 223
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.88 E-value=1.7e+02 Score=20.05 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=2.5
Q ss_pred HHHHhhH
Q psy21 233 QSKFARM 239 (288)
Q Consensus 233 q~~i~~l 239 (288)
|.+|..|
T Consensus 47 Q~~lq~L 53 (63)
T 2w6a_A 47 QREIHKL 53 (63)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 224
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=24.78 E-value=2.3e+02 Score=21.41 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy21 205 DTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250 (288)
Q Consensus 205 ~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~~ 250 (288)
...+++++++|..-..++...+.+.+.+-.++-.+|.++++++.-+
T Consensus 61 ~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 61 SARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445555555544444555555666666667777788877776544
No 225
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=24.74 E-value=1.6e+02 Score=23.27 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=40.3
Q ss_pred ceeEEeeCCCCCeEEEeecC------C-CcE-EEEEeCCccceeccCeEEEEEeCCc--ccEEEEecCCeEecCCcEEEE
Q psy21 64 SGFQVTSSAKGNMEITEVDP------D-GKF-VKLYNKGSEEQSLGNWQLVRKVQGE--VKTSFKFHRTLKIEAGGTVTV 133 (288)
Q Consensus 64 ~~~~~~~sa~G~v~I~e~d~------~-Gkf-V~l~N~s~~~~~L~gw~l~r~v~~~--~~~~y~Fp~~~~L~~g~~vtI 133 (288)
-.+++.++..=+|.|.-... + |+| |-|-| ||.=.-.++|. .+..|+| +-.++++|||
T Consensus 35 ~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~n---------gl~S~l~lNG~~~~e~~~~~----~~~~s~tvtV 101 (128)
T 3me0_B 35 QTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGH---------GWDSIVSVNGVDTGETTMRW----YKAGTQNLTI 101 (128)
T ss_dssp EEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEET---------TEEEEEEETTBCSSEEEEEE----SSSEEEEEEE
T ss_pred eEEEEEeCCCceEEEEEecCCcccccccCceEEecCC---------CeEEEEEECCeeccceeEEE----EecCCcEEEE
Confidence 35677777777788766542 2 455 88887 78777777774 3556655 4566678888
Q ss_pred Eec
Q psy21 134 WSF 136 (288)
Q Consensus 134 wa~ 136 (288)
=+.
T Consensus 102 ~S~ 104 (128)
T 3me0_B 102 GSR 104 (128)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 226
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=24.21 E-value=4.9e+02 Score=25.15 Aligned_cols=31 Identities=23% Similarity=0.105 Sum_probs=23.1
Q ss_pred cchhhhhHHHHhhhhhhhhcccccCCCCCCc
Q psy21 3 VVFETRIEEVQKKRKTELLCMNVSGAGSSSV 33 (288)
Q Consensus 3 ~~ld~ei~~yrklle~ee~r~~~~~~~~~~~ 33 (288)
..|..||+-|..|.=.-|+||-+....+-+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (602)
T 1cii_A 122 YGFRTEIAGYDALRLHTESRMLFADADSLRI 152 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred ccchhhccchhHHhhhhhhhhhhcccchhcc
Confidence 4578899999999999999986554444333
No 227
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=24.12 E-value=86 Score=26.73 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHh
Q psy21 186 EQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM--EAEIKRLQTEMTEQLKDYRELM 261 (288)
Q Consensus 186 ~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~l--e~el~~lr~~~~~ql~eyq~LL 261 (288)
..+...|-+++++....+.-.+-++|......|.+++.+|...+..+....+.. -+-+.+.+-+|.+ ..|..|+
T Consensus 24 ~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks~p~i~k--e~Y~~L~ 99 (206)
T 3oa7_A 24 AQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQSRPDISA--EECNFLM 99 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHCTTCCH--HHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhcCcccCH--HHHhhcC
No 228
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.99 E-value=2.8e+02 Score=26.62 Aligned_cols=22 Identities=0% Similarity=-0.247 Sum_probs=9.1
Q ss_pred hCCchhHHHHHHHHHHHHHHHH
Q psy21 201 SGKYDTEMNELRAANYRLTERN 222 (288)
Q Consensus 201 ~~~l~~ei~~L~~~~~~Le~~l 222 (288)
...+..+++.|++....+..++
T Consensus 46 ~r~~~~~~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 46 WRRTQFLTEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 229
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A
Probab=23.78 E-value=1.5e+02 Score=22.16 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=13.9
Q ss_pred EEEEeCCccceeccCeEEEEEeCC
Q psy21 88 VKLYNKGSEEQSLGNWQLVRKVQG 111 (288)
Q Consensus 88 V~l~N~s~~~~~L~gw~l~r~v~~ 111 (288)
|.|.|++. .||+|.-...+
T Consensus 27 vtVtN~g~-----~gWtv~~~~~~ 45 (103)
T 2cwr_A 27 VTLNLDGQ-----YDWTVKVKLAP 45 (103)
T ss_dssp EEEEESSC-----CCCEEEEEECT
T ss_pred EEEeCCCC-----CcEEEEEECCC
Confidence 67888863 79999755543
No 230
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.46 E-value=65 Score=19.48 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=16.0
Q ss_pred HHHHhhhhhhhhhhHHHhhhhhh
Q psy21 257 YRELMEIKINLDVEIAQYRNLME 279 (288)
Q Consensus 257 yq~LL~vKl~Le~EIatYrkLLE 279 (288)
-.+|+.-|..|+.|++-.+.||.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhh
Confidence 35667777777777777777764
No 231
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=23.44 E-value=41 Score=30.92 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=31.3
Q ss_pred ceeEEeeCCCCCeEEEee-----cCCCcEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCeEecCCcEEEEE
Q psy21 64 SGFQVTSSAKGNMEITEV-----DPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVW 134 (288)
Q Consensus 64 ~~~~~~~sa~G~v~I~e~-----d~~GkfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtIw 134 (288)
.+.+++-....+|+|--. .+.++ |.|. ...++++..|-+++|..... +. | ++|+||++|.+-
T Consensus 40 vk~tvtN~g~~~~~lLk~~~lD~~~~~~-~~V~-~~G~~v~f~Gi~~~~~~~~~-d~---f---~~L~pG~Sve~~ 106 (343)
T 2x3c_A 40 VNLTLTNTGDKPIRLLKWQLPGSDDAPL-FLVE-RDGQPVSYEGALIKRAAPTD-KD---F---QLLKAGQSLTVQ 106 (343)
T ss_dssp EEEEEEECSSSCEEEEGGGSCSSSCCCC-EEEE-ETTEECCBCSCCCCCCCCCG-GG---E---EEECTTCEEEEE
T ss_pred EEEEEEeCCCCceEeeccCCCCcCccce-EEEE-eCCcccceeeEEEeccCCCh-hh---c---EEeCCCCeEEEE
Confidence 455555555556665322 23333 3443 33456666676666654432 11 1 356666666554
No 232
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.30 E-value=1.6e+02 Score=19.10 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=4.1
Q ss_pred HHHHHHHHhhH
Q psy21 229 IEYEQSKFARM 239 (288)
Q Consensus 229 l~~~q~~i~~l 239 (288)
++.+|.++++|
T Consensus 14 ld~LqTr~ArL 24 (46)
T 3swy_A 14 LDTLQTRFARL 24 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 233
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=22.53 E-value=3.7e+02 Score=23.06 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy21 209 NELRAANYRLTERNKELEDQI 229 (288)
Q Consensus 209 ~~L~~~~~~Le~~l~~le~~l 229 (288)
.+-+.+|.+++..+.+.|.++
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RI 100 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRI 100 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhhhhcccccHHHHh
Confidence 333344444444444444333
No 234
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.40 E-value=1.9e+02 Score=23.04 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Q psy21 201 SGKYDTEMNELRAANYRLTERNKELED---QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEI 271 (288)
Q Consensus 201 ~~~l~~ei~~L~~~~~~Le~~l~~le~---~l~~~q~~i~~le~el~~lr~~~~~ql~eyq~LL~vKl~Le~EI 271 (288)
..+|+.+|..++..+......+..++. ++..++..+...+.++..+...+..-..--..-=..|-.++.|+
T Consensus 3 ~s~LEd~L~~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 76 (135)
T 2e7s_A 3 LGSLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 76 (135)
T ss_dssp ---CCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 235
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=22.37 E-value=2e+02 Score=21.81 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy21 207 EMNELRAANYRLTERNKELED 227 (288)
Q Consensus 207 ei~~L~~~~~~Le~~l~~le~ 227 (288)
+|.+|+..|+.+-.+|-+|=.
T Consensus 13 ~L~~lR~~ID~ID~~il~LL~ 33 (114)
T 3rmi_A 13 ELAYLRQSIDNFDITLIHILA 33 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554444433
No 236
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.14 E-value=2.5e+02 Score=21.03 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTE 249 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~~ 249 (288)
.+.+....+.++..|.+.|..-..+-...+..+..|+.+|..+...
T Consensus 37 ~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~ 82 (99)
T 3ni0_A 37 AETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQE 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666655443333222333444444444444443
No 237
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.14 E-value=2.5e+02 Score=24.59 Aligned_cols=10 Identities=30% Similarity=0.125 Sum_probs=4.5
Q ss_pred cCCcEEEEEe
Q psy21 126 EAGGTVTVWS 135 (288)
Q Consensus 126 ~~g~~vtIwa 135 (288)
.|...+.|.+
T Consensus 27 ~~~~~~~v~~ 36 (341)
T 3fpp_A 27 DALRKVDVGA 36 (341)
T ss_dssp EESSEEECCC
T ss_pred EeeEEEEEec
Confidence 3444444444
No 238
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.97 E-value=1.8e+02 Score=19.17 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy21 215 NYRLTERNKELEDQI 229 (288)
Q Consensus 215 ~~~Le~~l~~le~~l 229 (288)
++.|+.++.+||..+
T Consensus 14 V~KLek~ID~LEdeL 28 (52)
T 2z5i_A 14 VARLKKLVDDLEDEL 28 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 239
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.79 E-value=4.6e+02 Score=25.48 Aligned_cols=15 Identities=27% Similarity=0.089 Sum_probs=8.5
Q ss_pred CCCCeEEEeecCCCc
Q psy21 72 AKGNMEITEVDPDGK 86 (288)
Q Consensus 72 a~G~v~I~e~d~~Gk 86 (288)
..|.-.+-.|++.|=
T Consensus 211 ~~g~~l~LGV~~~GI 225 (575)
T 2i1j_A 211 KKNTELWLGVDALGL 225 (575)
T ss_dssp TTCCEEEEEECSSEE
T ss_pred cCCCEEEEEEcCCee
Confidence 355544556777663
No 240
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=21.74 E-value=1.4e+02 Score=22.54 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=25.0
Q ss_pred CCcEEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCeEecCCcEEE
Q psy21 84 DGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVT 132 (288)
Q Consensus 84 ~GkfV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vt 132 (288)
+..-++|.|++.+++. ..-.+.|.+...+.=|..+.++||+..+
T Consensus 33 N~Ytlki~Nkt~~~~~-----~~l~v~g~~~l~~~g~~~i~v~~g~~~~ 76 (118)
T 2r39_A 33 NTYTLKVINKTQQVQE-----YNLDVKGLNDVSWYGKQTIQVEPGEVLN 76 (118)
T ss_dssp EEEEEEEEECSSSCEE-----EEEEEESCSSCEEESCCEEEECTTCEEE
T ss_pred EEEEEEEEECCCCCEE-----EEEEEeCCcccEEeCCCcEEECCCCEEE
Confidence 4567999999988753 3323322122222213348888997533
No 241
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=21.43 E-value=1.2e+02 Score=28.43 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy21 192 LELKETKGRSGKYDTEMNELRAANYRLTERNKE----------LEDQIEYEQSKFARMEAEIKRLQTEMTEQ 253 (288)
Q Consensus 192 eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~~----------le~~l~~~q~~i~~le~el~~lr~~~~~q 253 (288)
+++..+-.+...+..+++.|++....+..++.. +..++..+...|..++.++..+..++...
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555554432 12234455556666666666666555443
No 242
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=21.38 E-value=5.6e+02 Score=24.76 Aligned_cols=37 Identities=0% Similarity=-0.050 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Q psy21 187 QSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNK 223 (288)
Q Consensus 187 ~~~~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le~~l~ 223 (288)
+..+.+|+.....-+++++.+++......+..+.++.
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~ 394 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALN 394 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555444444444433
No 243
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.18 E-value=4e+02 Score=25.59 Aligned_cols=30 Identities=10% Similarity=-0.172 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Q psy21 190 LLLELKETKGRSGKYDTEMNELRAANYRLT 219 (288)
Q Consensus 190 ~~eEl~~~~~~~~~l~~ei~~L~~~~~~Le 219 (288)
.-++-+.+..+++.++.+.+.+.++|..+.
T Consensus 42 ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555555555554443
No 244
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.07 E-value=4.6e+02 Score=24.67 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=7.1
Q ss_pred cCccchhhheecc
Q psy21 157 GSGDEISTILLNT 169 (288)
Q Consensus 157 g~g~~i~t~L~d~ 169 (288)
++++.+.+.|...
T Consensus 20 PTtCgl~d~L~ky 32 (411)
T 3ghg_C 20 PTTCGIADFLSTY 32 (411)
T ss_dssp ECSHHHHHHHHHH
T ss_pred CCcchHHHHHHHh
Confidence 3566666665443
No 245
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=21.06 E-value=2.6e+02 Score=20.76 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy21 208 MNELRAANYRLTERNKELEDQ 228 (288)
Q Consensus 208 i~~L~~~~~~Le~~l~~le~~ 228 (288)
+..|++++..=+..|++++..
T Consensus 34 l~~l~~e~~~R~~~i~el~ak 54 (101)
T 1d7m_A 34 LASLESEGAEREKRLRELEAK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333344444433
No 246
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.00 E-value=1.7e+02 Score=26.63 Aligned_cols=8 Identities=50% Similarity=0.763 Sum_probs=2.9
Q ss_pred HHHhhHHH
Q psy21 234 SKFARMEA 241 (288)
Q Consensus 234 ~~i~~le~ 241 (288)
.+|..||.
T Consensus 42 ~KI~~LE~ 49 (323)
T 1lwu_B 42 AKMQRMEE 49 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 247
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=20.71 E-value=2.1e+02 Score=22.54 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNK 223 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~ 223 (288)
|+..+++|...+.-|+.++.
T Consensus 66 L~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 66 LSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444
No 248
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.70 E-value=4.9e+02 Score=23.82 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=13.6
Q ss_pred HHHhHHHHHHHHHHhhCCchhHHHHHHHHH
Q psy21 186 EQSSLLLELKETKGRSGKYDTEMNELRAAN 215 (288)
Q Consensus 186 ~~~~~~eEl~~~~~~~~~l~~ei~~L~~~~ 215 (288)
.+.+..++|..++..+..-+.++..|++.+
T Consensus 310 ~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~ 339 (406)
T 4dyl_A 310 TLTSVTDELAVATEMVFRRQEMVTQLQQEL 339 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 249
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=20.64 E-value=1e+02 Score=22.04 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy21 204 YDTEMNELRAANYRLTERNKELEDQIE 230 (288)
Q Consensus 204 l~~ei~~L~~~~~~Le~~l~~le~~l~ 230 (288)
.+.++..|+.+++.|+..+.-||.++.
T Consensus 43 ce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 43 TRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777666666553
No 250
>2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis}
Probab=20.42 E-value=49 Score=25.45 Aligned_cols=24 Identities=21% Similarity=0.599 Sum_probs=16.2
Q ss_pred ecCCcEEEEEecccCCCCCCCCCcee
Q psy21 125 IEAGGTVTVWSFNVEGATHEPPHNIV 150 (288)
Q Consensus 125 L~~g~~vtIwa~~~~~~~~~pp~dlv 150 (288)
|+.|++|+||...- -...||--.|
T Consensus 71 lK~GdKIKVW~s~i--LESyPaK~~V 94 (108)
T 2jqo_A 71 LKRGEKIKVWFHTR--KESNPPSATI 94 (108)
T ss_dssp CCTTEEEEEEEEEE--ECSSSCEEEE
T ss_pred cCCCCEEEEEehhh--hhhCCcchhh
Confidence 57999999999754 2234555444
No 251
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=20.36 E-value=1.5e+02 Score=23.19 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=30.7
Q ss_pred CcEEEEEeCCccceeccCeEEEEEeCCcc----cEEEEecCCeEecCCcEEEEE
Q psy21 85 GKFVKLYNKGSEEQSLGNWQLVRKVQGEV----KTSFKFHRTLKIEAGGTVTVW 134 (288)
Q Consensus 85 GkfV~l~N~s~~~~~L~gw~l~r~v~~~~----~~~y~Fp~~~~L~~g~~vtIw 134 (288)
-+.|.|.|+|.-... |.+....++.. -... .|..-+|.||.++.|-
T Consensus 46 ~~~l~I~Ntg~vpa~---F~f~~~~~~~~~~~~wl~v-~P~~G~L~Pge~~~I~ 95 (140)
T 3qbt_B 46 KEKFQISNNGQVPCH---FSFIPKLNDSQYCKPWLRA-EPFEGYLEPNETVDIS 95 (140)
T ss_dssp EEEEEEEECSSSCEE---EEEECCTTCSSSSCTTEEE-ESCEEEECTTCEEEEE
T ss_pred eeEEEEEcCCccceE---EEEecCCCchhhhhHhhhc-CCcccccCCCCeeEEE
Confidence 368899999976654 67665432211 1222 4777899999988875
No 252
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=20.33 E-value=2.7e+02 Score=21.17 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=28.2
Q ss_pred EEEEEeCCccceeccCeEEEEEeCCcccEEEEecCCeEecCCcEEEE
Q psy21 87 FVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTV 133 (288)
Q Consensus 87 fV~l~N~s~~~~~L~gw~l~r~v~~~~~~~y~Fp~~~~L~~g~~vtI 133 (288)
-|.|+|.|..+ -++|.+.-.+||....+...+ -|.+|.+.+|
T Consensus 24 ~atVkN~G~~~--a~~~~V~ly~~g~~v~t~~v~---~LaaG~s~tv 65 (114)
T 2l0d_A 24 TATIENQGNKD--STSFNVSLLVDGIVVDTQTVT---SLESENSTNV 65 (114)
T ss_dssp EEEEEECSSSC--BCCEEEEEEETTEEEEEEEES---CBCBTCEEEE
T ss_pred EEEEEECCCCC--CCCEEEEEEECCEEEcceecc---cccCCCEEEE
Confidence 47889999766 478999888887333233332 3778877554
No 253
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=20.21 E-value=2.3e+02 Score=19.76 Aligned_cols=31 Identities=6% Similarity=0.186 Sum_probs=16.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy21 229 IEYEQSKFARMEAEIKRLQTEMTEQLKDYRE 259 (288)
Q Consensus 229 l~~~q~~i~~le~el~~lr~~~~~ql~eyq~ 259 (288)
...+...+..+...|..+...+......|+.
T Consensus 58 ~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 88 (99)
T 3zbh_A 58 YQELRPSFEKMAVLLNEVGQQLHNSATILED 88 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544
No 254
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=20.20 E-value=1.9e+02 Score=25.65 Aligned_cols=43 Identities=30% Similarity=0.431 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy21 206 TEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQT 248 (288)
Q Consensus 206 ~ei~~L~~~~~~Le~~l~~le~~l~~~q~~i~~le~el~~lr~ 248 (288)
.++..|...+..++.++..++..++..-..|..+|.++++++.
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 258 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKK 258 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666666666555555566666666666544
Done!