RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy21
(288 letters)
>gnl|CDD|216203 pfam00932, LTD, Lamin Tail Domain. The lamin-tail domain (LTD),
which has an immunoglobulin (Ig) fold, is found in
Nuclear Lamins, Chlo1887 from Chloroflexus, and several
bacterial proteins where it occurs with membrane
associated hydrolases of the
metallo-beta-lactamase,synaptojanin, and
calcineurin-like phosphoesterase superfamilies.
Length = 108
Score = 66.0 bits (161), Expect = 9e-14
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 68 VTSSAKGNMEITEVDPDG---KFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLK 124
SA GN+ I+E D G ++++LYN + L W L ++ F +
Sbjct: 1 APVSAAGNVIISEYDEGGSNNEWIELYNTSAAAVDLSGWTLKDS-----GNTYTFPPGVV 55
Query: 125 IEAGGTVTVWSFNVEGATHEPPHNIVMKNQ---KFGSGDEISTILLNTDGELANQ 176
+E G TVTV++ GA P + V +G+G + LL+ DGE+ +
Sbjct: 56 LEPGATVTVYA---GGAGDNPTFDAVWGLSTQPIWGNGGDT-VTLLDADGEVVDS 106
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 61.1 bits (149), Expect = 9e-11
Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQT 248
E+ E + + + E+ L+ L + ELE++ E E Q + +E E+++L+
Sbjct: 217 EITELRRQIQSLEIELQSLKKQKASLERQLAELEERYELELADYQDTISELEEELQQLKA 276
Query: 249 EMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
EM QL++Y+EL+++K+ LD+EIA YR L+E EES
Sbjct: 277 EMARQLREYQELLDVKLALDIEIATYRKLLEGEES 311
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 44.7 bits (106), Expect = 3e-05
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 166 LLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKEL 225
L EL E ++ L E L +L+E + + + E+ EL+ Y L L
Sbjct: 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
Query: 226 EDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
E Q + + + A +E +++ L+ ++ E EL E L+ ++ + + +E+ E+ L
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 286 PT 287
Sbjct: 361 EE 362
Score = 39.3 bits (92), Expect = 0.002
Identities = 23/116 (19%), Positives = 46/116 (39%)
Query: 170 DGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229
+ ++ + + LR+ L EL + + L R ++LE+QI
Sbjct: 788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
Query: 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
E + AEI+ L+ + E + L+ + +L+ +A R+ +E L
Sbjct: 848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
Score = 34.6 bits (80), Expect = 0.068
Identities = 27/127 (21%), Positives = 52/127 (40%)
Query: 159 GDEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRL 218
+E+S + +LA E ++ L + + L EL E + + + + E
Sbjct: 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
Query: 219 TERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLM 278
+ELE QIE + + + + L+ E+T ++ L E +L+ IA +
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
Query: 279 EAEESSL 285
E E +
Sbjct: 841 EDLEEQI 847
Score = 34.6 bits (80), Expect = 0.069
Identities = 21/120 (17%), Positives = 43/120 (35%)
Query: 168 NTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELED 227
EL E I+ L + EL E + + + ++ +L+ L E EL
Sbjct: 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
Query: 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLPT 287
++ + A + ++ L+ + + +L E L +I +E E +
Sbjct: 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
Score = 33.1 bits (76), Expect = 0.20
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 170 DGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229
+ +L E +D L +E + L +L+E K + E+ EL A L R +ELE+Q+
Sbjct: 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
Query: 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKIN-LDVEIAQYRNLMEAEESSL 285
E +SK A++E +I L E E +E ++ L+ + + +E L
Sbjct: 382 ETLRSKVAQLELQIASLNNE--------IERLEARLERLEDRRERLQQEIEELLKKL 430
Score = 33.1 bits (76), Expect = 0.20
Identities = 24/101 (23%), Positives = 51/101 (50%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
DE+ L + E AN +++L + ++ L++ + + + ++ L A L
Sbjct: 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYREL 260
E +ELE ++E ++ A +E + L++E+ E ++ REL
Sbjct: 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
Score = 32.0 bits (73), Expect = 0.38
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 156 FGSGDEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAAN 215
GS S+IL + R I+ L ++ L ++ E + + E+ EL
Sbjct: 663 GGSAKTNSSIL--------ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL 714
Query: 216 YRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYR 275
+L + +EL QI + AR+EAE+++L+ + + K+ EL L+ + +
Sbjct: 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
Query: 276 NLMEAEE 282
+ E
Sbjct: 775 EELAEAE 781
Score = 32.0 bits (73), Expect = 0.40
Identities = 28/115 (24%), Positives = 56/115 (48%)
Query: 171 GELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIE 230
++A E+ + LRKE L EL++ + + +++ LR RL ++LE++I
Sbjct: 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
Query: 231 YEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ +EAEI+ L+ + E ++ E L+ +I Q + ++A +L
Sbjct: 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
Score = 30.8 bits (70), Expect = 1.0
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 174 ANQERIIDNLRKEQSSL-LLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE 232
+ER+ + + L ELKE + + + E+ EL+ RL E +EL +++E
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
Query: 233 QSKFARMEAEIKRLQ 247
+ E E+ +LQ
Sbjct: 474 EQALDAAERELAQLQ 488
Score = 30.0 bits (68), Expect = 1.5
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAA-------NYRLTERNKE 224
+L + +++L E L EL+E + R + + ++ LR+ L +
Sbjct: 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
Query: 225 LEDQIEYEQSKFARMEAEIKRLQTEMTEQLKD--YRELMEIKINLDVEIAQYRNLMEAEE 282
LE ++E + + R++ EI+ L ++ E EL E++ L+ + L EA E
Sbjct: 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
Query: 283 S 283
Sbjct: 465 E 465
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 42.8 bits (101), Expect = 2e-04
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 168 NTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELED 227
+ EL+ E ++ L++E E++E K + E+ EL+ L E +ELE
Sbjct: 243 ELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEG 302
Query: 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLP 286
+I + ++ L+ E+ E + EL E L E+ + L+E E L
Sbjct: 303 EIS-------LLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Score = 40.1 bits (94), Expect = 0.001
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
EL E + L + L ELK K + + ELR + +ELE Q+E
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELR-------RQLEELERQLEE 720
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ + A +E E+++LQ+ + E ++ EL E L + + +E+ E +L
Sbjct: 721 LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774
Score = 40.1 bits (94), Expect = 0.001
Identities = 30/124 (24%), Positives = 63/124 (50%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
+E+ L + L ER +++L + + L E++E + + + +++EL L
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279
+ +EL++++E +++ +E E+K L+ E E ++ REL L EI + R +E
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915
Query: 280 AEES 283
E+
Sbjct: 916 ELEA 919
Score = 38.9 bits (91), Expect = 0.003
Identities = 29/126 (23%), Positives = 61/126 (48%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
+ +L +L ER ++ L++E ++L EL++ + R + + E+ EL L
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQ 757
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279
ER +ELE+++E + A+++ EI+ L+ + ++ EL E + + +E
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817
Query: 280 AEESSL 285
+ E
Sbjct: 818 SLEQRR 823
Score = 38.5 bits (90), Expect = 0.004
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 184 RKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEI 243
E + LL +LKE + + + E++ L L E +E E +IE +S+ + E+
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREEL 283
Query: 244 KRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEE 282
+ LQ E+ E ++ EL L + + N +E E
Sbjct: 284 EELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322
Score = 37.8 bits (88), Expect = 0.006
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
+ + L E+ E L++E L EL+E + R + E+ L RL
Sbjct: 768 ESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRN 276
+ +ELE++IE + K +E E++ L+ E+ E ++ EL K L+ E+ +
Sbjct: 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884
Score = 37.4 bits (87), Expect = 0.008
Identities = 26/114 (22%), Positives = 57/114 (50%)
Query: 170 DGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229
L E + + LR+E + L EL E + + E+ L RL+ER ++L++++
Sbjct: 368 SALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL 427
Query: 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
+ +++ ++ E++ L E+ E + EL + L+ E+A+ + ++ E
Sbjct: 428 KELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481
Score = 34.3 bits (79), Expect = 0.076
Identities = 28/111 (25%), Positives = 49/111 (44%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
E+ E +D L +E L EL+E K + + E EL L E +ELE+++
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEE 282
+S+ A ++ EI++L+ + E L L+ E+ + E
Sbjct: 896 LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETE 946
Score = 34.3 bits (79), Expect = 0.086
Identities = 28/125 (22%), Positives = 56/125 (44%)
Query: 161 EISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTE 220
++ + L + EL E ++ L++ L EL+ + K E+ EL L E
Sbjct: 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQE 793
Query: 221 RNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEA 280
+ELE+++E + + +E E++ L+ ++ EL E L+ ++ + +E
Sbjct: 794 ELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEE 853
Query: 281 EESSL 285
E L
Sbjct: 854 LEKEL 858
Score = 33.5 bits (77), Expect = 0.12
Identities = 28/126 (22%), Positives = 49/126 (38%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
+E+ LL E+ E I LR+ L EL+E + R + ++ L+
Sbjct: 284 EELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERE 343
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279
+ELE + + +E ++ L E+ E + RE + EI ++
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403
Query: 280 AEESSL 285
E SL
Sbjct: 404 REIESL 409
Score = 32.4 bits (74), Expect = 0.28
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
DE+ L + EL + ++ L E+ L ELKE + + + E+ EL + L
Sbjct: 845 DELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRE 259
E ++L +++E ++K R+E E+ L+ E+ E+ +D E
Sbjct: 905 EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLE 944
Score = 32.4 bits (74), Expect = 0.30
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
EL +R I++L + L L++ K + + E+ EL+ L E +ELE+Q+E
Sbjct: 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEE 457
Query: 232 EQSKFARMEAEIKRLQTEMTE---QLKDYRELMEIKINLDVEIAQYRNLMEAEESSLP 286
+ + +E E+ LQ E+ +L ++ R ++EA ES LP
Sbjct: 458 LRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLP 515
Score = 32.0 bits (73), Expect = 0.46
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
+E T+L + LA E + L ++ S+LL EL+E E+ EL A +
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEA---LREELAELEAELAEIR 396
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279
+EL+ +IE + + R+ ++ L+ E+ E + EL L+ E+ + +E
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456
Query: 280 AEESSL 285
L
Sbjct: 457 ELRDRL 462
Score = 31.6 bits (72), Expect = 0.50
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 7/123 (5%)
Query: 158 SGDEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYR 217
+E+ L ELA E ++ L+ L EL+E + + + EL
Sbjct: 710 QLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELES 769
Query: 218 LTERNKELEDQIE-------YEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVE 270
L E +L+++IE Q + +E E++ + + ++ L + + L+ E
Sbjct: 770 LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829
Query: 271 IAQ 273
I +
Sbjct: 830 IEE 832
Score = 29.7 bits (67), Expect = 2.2
Identities = 24/120 (20%), Positives = 48/120 (40%)
Query: 166 LLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKEL 225
L + L + I+ L++E L+E + + + EL L E +EL
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377
Query: 226 EDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ + E ++ AEI+ E+ +++ E +E ++ + +EAE L
Sbjct: 378 FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL 437
Score = 29.7 bits (67), Expect = 2.3
Identities = 27/129 (20%), Positives = 59/129 (45%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
D + L + + E+ I+ L +E L +L E + + + E+ EL+ L
Sbjct: 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279
+ELED+++ + + +E E++ L++E+ E ++ +L E L+ ++ + +
Sbjct: 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929
Query: 280 AEESSLPTY 288
E L
Sbjct: 930 ELEEELEEE 938
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 41.0 bits (97), Expect = 4e-04
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLK 255
+ L N L E+ ++LE ++ +++ ++E E++RL++E+ E+LK
Sbjct: 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSEL-EKLK 49
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 37.7 bits (88), Expect = 0.005
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 163 STILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTER- 221
ST L EL + ++ LR+E +L E+ + + G+ ++EL A RL
Sbjct: 411 STELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEK 470
Query: 222 ------NKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELME 262
+E E +E E+SK R + E+ ++++E+ +L + E E
Sbjct: 471 DELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFE 517
Score = 29.2 bits (66), Expect = 2.7
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 177 ERIIDNLRKEQS----------SLLLELKETKGRSGKYD-TEMNELRAANYRLTERNKEL 225
R+ + LR+EQ L ++KE + R + + + + +L R +EL
Sbjct: 696 ARLAEELRQEQEHSQHLERLRKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVREL 755
Query: 226 EDQIEYEQSKFA-------RMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQY-RNL 277
E +++ EQ + A +ME +K LQ ++ E K+ L ++ L +I Y R L
Sbjct: 756 EAELDGEQRRHAETQKNLRKMERRVKELQFQVEEDKKNLERLQDLVDKLQAKIKTYKRQL 815
Query: 278 MEAEE 282
EAEE
Sbjct: 816 EEAEE 820
Score = 28.9 bits (65), Expect = 3.6
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI--------EY 231
+D ++E +L EL K + ++ LR N L + +L DQ+ E
Sbjct: 400 LDTAQREARNLSTELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHEL 459
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKI-NLDVEIAQYRNLME 279
E+++ R+EAE LQ + E+ + EL E K+ VE++Q R+ +E
Sbjct: 460 EKAR-RRLEAEKDELQAAL-EEAEAALELEESKVLRAQVELSQIRSEIE 506
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 37.7 bits (88), Expect = 0.006
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
D+++ EL + ++ + KE + ELK+ + + K E+NEL+ RL
Sbjct: 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQL----KDYRELMEIKINLDVEIAQYR 275
E + L +++ + A +EA+I L+ E ++ K +L ++ +L +
Sbjct: 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
Query: 276 NLME 279
+L E
Sbjct: 473 DLKE 476
Score = 33.1 bits (76), Expect = 0.17
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 168 NTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELED 227
EL+ E + + + +L + E+ EL+ L E+ K +E
Sbjct: 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854
Query: 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYR-ELMEIKINLDVEIAQYRNLMEAEE 282
+IE K +E E++ L+ L+D L ++K D AQ R L E
Sbjct: 855 EIENLNGKKEELEEELEELEAA----LRDLESRLGDLKKERDELEAQLRELERKIE 906
Score = 31.2 bits (71), Expect = 0.81
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 170 DGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229
EL++ + + + L EL + + G+ + E+ +L +L ER +ELE+ +
Sbjct: 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
Query: 230 EYEQSKFARMEAEIKRLQT---EMTEQLKDYRELME 262
+ + +++E+K L+ E+ E L E +
Sbjct: 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782
Score = 30.0 bits (68), Expect = 1.8
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 171 GELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELE---D 227
EL ++ L++E SSL EL+ + R ++EL + + E+E +
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENR-------LDELSQELSDASRKIGEIEKEIE 726
Query: 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
Q+E E+ K E++ + + +++++ + ++ L+ I + + E +L
Sbjct: 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK---ELEARIEELEEDLHKLEEAL 781
Score = 29.3 bits (66), Expect = 2.8
Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
E+ + +L+++ S+ E++ G+ + + E+ EL AA L R +L+ + +
Sbjct: 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD- 892
Query: 232 EQSKFARMEAEIKRLQTEMTEQ 253
+EA+++ L+ ++ E
Sbjct: 893 ------ELEAQLRELERKIEEL 908
Score = 29.3 bits (66), Expect = 2.9
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKE--------TKGRSGKYDTEMNELRAANYRLTERNK 223
EL I L K + L+E + + ++ EL A L
Sbjct: 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
Query: 224 ELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
E E ++E + + A++EAEI +L E+ E ++ E + + L E A+ + +E +
Sbjct: 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371
Query: 284 SL 285
L
Sbjct: 372 EL 373
Score = 29.3 bits (66), Expect = 2.9
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 168 NTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELED 227
+ E+ I+ L +E + + E+ +LRA + + E D
Sbjct: 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
Query: 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLP 286
+ ++++L+ E+ E ++ L E L E+A + E+ +
Sbjct: 386 -------ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437
Score = 28.5 bits (64), Expect = 5.5
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 177 ERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRA------ANYRLTERNK-ELEDQI 229
E+ I+NL ++ L EL+E + ++ + +L+ A R ER ELE QI
Sbjct: 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
Query: 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVE--IAQYRNLMEAEESSL 285
E ++ + + ++A+++ L+ E++E E EI + +E E +L
Sbjct: 913 EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
Score = 28.5 bits (64), Expect = 5.6
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 177 ERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE---- 232
ER + + ++ +SL EL++ + + + E+ L E NK+++D E E
Sbjct: 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ---LLEELNKKIKDLGEEEQLRV 292
Query: 233 QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLPTY 288
+ K +EAEI L+ + E+ ++ + E L+ EI + +E E +
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
Score = 28.5 bits (64), Expect = 5.9
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
I +L + + EL++ + R K + E+++L +ELE +IE E+ + ++
Sbjct: 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLL-------AEIEELEREIEEERKRRDKL 355
Query: 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEA 280
E L+ E+ + + E+ + E+ YR +E
Sbjct: 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
Score = 28.1 bits (63), Expect = 7.1
Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
I ++ KE +L G+ + + E+ EL AA L R +L+ + + +++ +
Sbjct: 849 IKSIEKEIENL-------NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
Query: 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLP 286
E +I+ L+ ++ ++ K EL L+ E+++ + +E
Sbjct: 902 ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 36.2 bits (84), Expect = 0.013
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 166 LLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKEL 225
L E+A E+ I + +++ L +LK + TE+ L A + K+L
Sbjct: 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLE-------TEIASLEAQLIETADDLKKL 92
Query: 226 EDQIEYEQSKFARMEAEIKRLQTEMTEQ 253
QI + A + L+ + EQ
Sbjct: 93 RKQIAD-------LNARLNALEVQEREQ 113
Score = 30.5 bits (69), Expect = 1.1
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 12/124 (9%)
Query: 165 ILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKE 224
L T +LA I + E ++LL E + + + + E + A
Sbjct: 165 ALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELS---A 221
Query: 225 LEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESS 284
+ ++E ++ +R++ EI + + RE E A R + +
Sbjct: 222 DQKKLEELRANESRLKNEIASAEAAAAKA----REAAAAA-----EAAAARARAAEAKRT 272
Query: 285 LPTY 288
TY
Sbjct: 273 GETY 276
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 36.2 bits (84), Expect = 0.017
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 181 DNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE-QSKFARM 239
D LR +L+ E+KE + R K +E L+A N RL +R + ++ QI+ QS+ +
Sbjct: 59 DTLR----TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQEL 114
Query: 240 EAEIKRLQTEMTEQLKDYRELM 261
EI++L++E + +L
Sbjct: 115 TKEIEQLKSERQQLQGLIDQLQ 136
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 35.8 bits (83), Expect = 0.022
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 196 ETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLK 255
E + Y+ + +L RL E N EL+ ++E + + ++E+E++R + E+ ++++
Sbjct: 412 EERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVR 471
Query: 256 DYRELMEIKINLDVEIAQY-RNLMEAEE 282
RE+ D I + + L E ++
Sbjct: 472 KDREIRA----RDRRIERLEKELEEKKK 495
Score = 30.1 bits (68), Expect = 1.6
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
+ E ++ L +E S L EL+E K K ++E+ R +++E I
Sbjct: 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDRE----IRA 478
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEI 271
+ R+E E++ + + E+L+ R+L E++ +E+
Sbjct: 479 RDRRIERLEKELEE-KKKRVEELE--RKLAELRKMRKLEL 515
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 34.2 bits (79), Expect = 0.044
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELR--AANY-RLTERNKELEDQ 228
ELA + + L++E L EL + + E+ ++ +AN L E N+EL ++
Sbjct: 81 ELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENRELREE 140
Query: 229 IEYEQSKFARMEAEIKRLQTE 249
+ + + +EAE +RLQ
Sbjct: 141 LAELKQENEALEAENERLQEN 161
Score = 30.4 bits (69), Expect = 0.73
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 206 TEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIK 264
E+ EL+ L E+ EL+ + + + + + +EAE++RLQ E+ + +E+
Sbjct: 73 QELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELD 131
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 34.0 bits (78), Expect = 0.100
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 170 DGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229
DGE +E ++ +++ L + E + + E++ ++A N RL+ ++EL+++
Sbjct: 13 DGE-EREESLLQESASKEAYYLQRILELQAELKQLRAELSNVQAENERLSSLSQELKEEN 71
Query: 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINL 267
E + + R+ EIK + L+DY EL E I+L
Sbjct: 72 EMLELQRGRLRDEIKEYKFREARLLQDYSELEEENISL 109
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 33.5 bits (76), Expect = 0.12
Identities = 15/121 (12%), Positives = 41/121 (33%), Gaps = 10/121 (8%)
Query: 168 NTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELED 227
+ L L + SL K+ + + + +++ +L+ + ++ + + L
Sbjct: 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLAT 207
Query: 228 QIEYEQS---KFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESS 284
+ Q+ + AR A ++ + ++ +IA + E
Sbjct: 208 RANAAQARTEELARRAAAAQQTAQAIQQRDA-------QISQKAQQIAARAEQIRERERQ 260
Query: 285 L 285
L
Sbjct: 261 L 261
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 33.1 bits (76), Expect = 0.16
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 176 QERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSK 235
+ + +N R E+ S L E + E R + TE+ +E E ++E +
Sbjct: 280 ENLLYENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQN 339
Query: 236 FARMEAEIKRLQTEMTEQLKDYREL 260
E K L +++ E K +L
Sbjct: 340 LI---EERKELNSKLEEIQKKLEDL 361
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 32.2 bits (73), Expect = 0.27
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
++ L+KE+ LL EL+E + + + L N RL E K+L ++ + ++ +
Sbjct: 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203
Query: 240 EAEIKRLQTEMTEQL 254
E ++ + E+ L
Sbjct: 204 EPGVELPEEELISDL 218
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 32.3 bits (74), Expect = 0.28
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 174 ANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQ 233
A+ +D + K + L EL E G ++EL + E ELE
Sbjct: 197 AHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISEL---EEVIAEIQDELESLRS--- 250
Query: 234 SKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
E++ L ++ E+L RE++EI + + + + E +L
Sbjct: 251 --------ELEALAEKIAEELLAVREILEI----EKALGDVLSKLARTEYTL 290
>gnl|CDD|220664 pfam10267, Tmemb_cc2, Predicted transmembrane and coiled-coil 2
protein. This family of transmembrane coiled-coil
containing proteins is conserved from worms to humans.
Its function is unknown.
Length = 387
Score = 32.1 bits (73), Expect = 0.31
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 185 KEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIK 244
++QS L +L E E+ E++ RL E + L++Q++ + + E +
Sbjct: 201 QQQSLNLDKLLE----------ELREIKEGQSRLEESYERLKEQLQRDYQYITQSLQEER 250
Query: 245 RLQTEMTEQLKDYRELMEIKI-NLDVEIA 272
+ EQL D EL + +I NL E+A
Sbjct: 251 YRYERLEEQLNDLTELHQNEIANLKQELA 279
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 31.3 bits (71), Expect = 0.36
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 217 RLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRN 276
L + N+ L++Q E Q + +E E+++L+ ++ +DY+ L++I + + R
Sbjct: 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI-------MDRARK 153
Query: 277 LMEAEESS 284
L E+
Sbjct: 154 LAVVEDDE 161
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 31.0 bits (71), Expect = 0.40
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRE 259
+EL +L E +ELE ++ + A++EA KR + E + K + +
Sbjct: 121 GKSELEQEIKKLEEEKEELEKRVAELE---AKLEAIEKREEEERQIEEKRHAD 170
Score = 27.2 bits (61), Expect = 7.4
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFA-RMEAEIKRLQTEM- 250
L+ +G+S + + E+ +L L +R ELE ++E + + + E KR E+
Sbjct: 115 ALQAEQGKS-ELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIA 173
Query: 251 -----TEQLKDY 257
+QLK
Sbjct: 174 FLKKQNQQLKSQ 185
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 31.9 bits (72), Expect = 0.41
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 177 ERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIE------ 230
E + + ++ L + KE + S E N L A +R ELE I+
Sbjct: 177 ETALRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKK 236
Query: 231 YEQSKFA-----------RMEAEIKRLQTEMTEQLKDYR-ELMEIKINLDVEIAQYRNLM 278
E + RM+ E+K+ +MT Q +D E +++++ + R L
Sbjct: 237 QENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQ 296
Query: 279 EAEESS 284
E ESS
Sbjct: 297 ERLESS 302
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 31.2 bits (71), Expect = 0.58
Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 178 RIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFA 237
R I L +++ R + +L+ E E +I +++ A
Sbjct: 282 REIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELA-------EAEAEIASLEARVA 334
Query: 238 RMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESS 284
+ A I+RL++ + + EL ++ + +V + Y L+ ES+
Sbjct: 335 ELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA 381
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 30.3 bits (69), Expect = 0.60
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 158 SGDEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYR 217
SGD + + N +I +L +++ L + + K + E+ L+ R
Sbjct: 19 SGDLFDFAVEENIVRIIN---VIYSLLQQRDRDLEFRESLEETLRKLEAEIERLQNTIER 75
Query: 218 LTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRE 259
L + ++LE ++ Q+K ++E ++K L+ ++LK+ +E
Sbjct: 76 LKTQLEDLERELALLQAKERQLEKKLKTLE----QKLKNEKE 113
>gnl|CDD|150838 pfam10226, DUF2216, Uncharacterized conserved proteins (DUF2216).
This is the conserved N-terminal half of a proteins
which are found from worms to humans. some annotation
suggests it might be PKR, the Hepatitis delta
antigen-interacting protein A, but this could not be
confirmed.
Length = 195
Score = 30.5 bits (69), Expect = 0.66
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 12/79 (15%)
Query: 158 SGDEISTILLNTDGELA--NQERIIDNLRKEQS---SLLLE----LKETKGRSGKYDTEM 208
+ +++S + +D EL ++E ++ LR+E++ S ++E ++E R + E+
Sbjct: 2 AAEDLSKL---SDEELLKWSKEELVRRLRREEAEKMSAIVEHGNLMREVNRRLQGHLNEI 58
Query: 209 NELRAANYRLTERNKELED 227
L+ N +L E N+EL D
Sbjct: 59 RGLKDVNQKLQEDNQELRD 77
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 29.9 bits (68), Expect = 0.76
Identities = 11/75 (14%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKIN 266
E +AA +L + K+L+ +++ ++ + + E ++++ ++E+ + +
Sbjct: 29 ESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEE--ARKAKQQELQQ 86
Query: 267 LDVEIAQYRNLMEAE 281
E+ Q + + E
Sbjct: 87 KQQELQQKQQAAQQE 101
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.2 bits (71), Expect = 0.78
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 161 EISTILLNTDGELANQERIIDNLRKEQ----------SSLLLELKETKGRSGKYDTEMNE 210
I ++ + EL R I+ + E + EL+E K + + E+
Sbjct: 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELES 249
Query: 211 LRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVE 270
L + +L E+ +ELE++IE + + +E ++K L E+ E+ ++Y +L E E
Sbjct: 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDE 308
Query: 271 I 271
+
Sbjct: 309 L 309
Score = 29.3 bits (66), Expect = 3.1
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 177 ERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTER-------NKELEDQI 229
E+ ++ L K + + E+ + R G+ E+ EL+ A L + +EL +
Sbjct: 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE-- 447
Query: 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEE 282
E+ + AE+KR++ E+ E + R+L + L+ + + L++ +E
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 30.2 bits (68), Expect = 0.86
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
L ++E+ + KE LL E + + E+ ++ A + K+ + ++E
Sbjct: 26 ALESEEKHLKEYDKEMEELLEEKMQ-------HVEELRQIHADINDMETEIKQSKSELER 78
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDY 257
K ARM E L+ + E K
Sbjct: 79 RMGKIARMHGEYNPLKESINEMRKLE 104
>gnl|CDD|203593 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) protein. This
family represents a conserved region approximately 150
residues long within a number of eukaryotic proteins
that show homology with Drosophila melanogaster Modifier
of rudimentary (Mod(r)) proteins. The N-terminal half of
Mod(r) proteins is acidic, whereas the C-terminal half
is basic, and both of these regions are represented in
this family. Members of this family include the Vps37
subunit of the endosomal sorting complex ESCRT-I, a
complex involved in recruiting transport machinery for
protein sorting at the multivesicular body (MVB). The
yeast ESCRT-I complex consists of three proteins (Vps23,
Vps28 and Vps37). The mammalian homologue of Vps37
interacts with Tsg101 (Pfam: PF05743) through its mod(r)
domain and its function is essential for lysosomal
sorting of EGF receptors.
Length = 150
Score = 29.6 bits (67), Expect = 0.91
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 206 TEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELME 262
E + L A N L E N E E Q+E +++ E+K+L+ + E+ + EL
Sbjct: 34 LEKDALLAQNESLAEENLEKEPQLEELKAQLRDKYEELKKLEEKYEEKKQQLDELSS 90
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 30.2 bits (68), Expect = 1.1
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 205 DTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDY----REL 260
D+E++EL+ RL + +ELE + + + ++ E ++L+ E + L++Y R
Sbjct: 69 DSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNN 128
Query: 261 MEIKINLDVEIAQYR 275
++++ NL QY
Sbjct: 129 LQLEDNLQSLELQYE 143
Score = 28.3 bits (63), Expect = 5.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
+D L+KE+ LL EL+E + D E+ EL+ +L N+EL+ EY +
Sbjct: 72 LDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQL--ENEELQYLREYNLFDRNNL 129
Query: 240 EAE 242
+ E
Sbjct: 130 QLE 132
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 30.0 bits (68), Expect = 1.4
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 208 MNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKIN- 266
+ ELR RL N+EL+ ++E +E + LK + ++N
Sbjct: 22 LYELRLDLARLLLENEELKQKVE------EALEGATNEDGKLAADLLKLEVARKKERLNQ 75
Query: 267 LDVEIAQYRNLMEA 280
+ I+Q + +E
Sbjct: 76 IRARISQLKEEIEQ 89
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.0 bits (68), Expect = 1.5
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 159 GDEISTILLNTDGELANQERI---IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAAN 215
+E +L + A+ E + + L L L+E + + ++ E LR
Sbjct: 292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
Query: 216 YRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELME 262
L ER +EL ++ +S+ ++ + E+ E ++ EL E
Sbjct: 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 29.9 bits (68), Expect = 1.6
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 182 NLRKEQSSLLLELKETKGRSGKYDTEMNELRAAN-YRLTERNKELEDQIEYEQSKFARME 240
L++E L ELKE + K + +L +L +E +++ + K +
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEEL 390
Query: 241 AEIKRLQTEMTEQLKDYRELMEIKIN 266
E++ E+ E+L+ +I +N
Sbjct: 391 EELEEELKELKEELESLYSEGKISVN 416
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 30.0 bits (68), Expect = 1.6
Identities = 23/116 (19%), Positives = 54/116 (46%)
Query: 154 QKFGSGDEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRA 213
Q+ G + T + + EL + +D E ++ E E + + +++ +
Sbjct: 292 QQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQ 351
Query: 214 ANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDV 269
+ L ++ K+++ IE Q++F E+ +LQ E+ + +K EL++ K + +
Sbjct: 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGI 407
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 29.0 bits (65), Expect = 1.9
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 195 KETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQ 247
+ K + + +L L +NK+LED K+ R +AEI+ +Q
Sbjct: 28 EAPKEEDQEKQNPVEDLEKEIADLKAKNKDLED-------KYLRSQAEIQNMQ 73
>gnl|CDD|234000 TIGR02760, TraI_TIGR, conjugative transfer relaxase protein TraI.
This protein is a component of the relaxosome complex.
In the process of conjugative plasmid transfer the
realaxosome binds to the plasmid at the oriT (origin of
transfer) site. The relaxase protein TraI mediates the
single-strand nicking and ATP-dependent unwinding
(relaxation, helicase activity) of the plasmid molecule.
These two activities reside in separate domains of the
protein.
Length = 1960
Score = 29.9 bits (67), Expect = 2.0
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 52 ILEEYESEERTSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQG 111
++ ++ + + VT+ K N +T D GK + + S + + + R Q
Sbjct: 687 VIRFWQKGKIPHDDYVVTNVNKHNNTLTLKDAQGK-TQKFKPSSLKDLERPFSVYRPEQL 745
Query: 112 EVKTSFKF-----HRTLKIEAGGTVTVWSFNVEGAT 142
EV + H ++ G +TV S N EG T
Sbjct: 746 EVAAGERLQVTGNHFHSRVRNGELLTVSSINNEGIT 781
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 29.2 bits (66), Expect = 2.1
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 214 ANYRLT--ERNKELED-----QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELM 261
L E+ KEL+ Q E+ +++ + ++K+LQ + E + D RELM
Sbjct: 64 LQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELM 118
>gnl|CDD|132604 TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase,
FMNH(2)-dependent. Members of this protein family are
monooxygenases that catalyze desulfonation of aliphatic
sulfonates such as methane sulfonate. This enzyme uses
reduced FMN, although various others members of the same
luciferase-like monooxygenase family (pfam00296) are
F420-dependent enzymes [Central intermediary metabolism,
Sulfur metabolism].
Length = 346
Score = 29.2 bits (66), Expect = 2.3
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 193 ELKETKGRSGKY---------DTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEI 243
+ +GR+ ++ +TE AA+ RL + D I Q FARM++
Sbjct: 210 KRAAKRGRTVRFGIRLHVIVRETEEEAWAAAD-RLISHLDD--DTIARAQKAFARMDSV- 265
Query: 244 KRLQTEMTEQLKDYRELMEIKINL 267
Q M R+ +EI NL
Sbjct: 266 --GQRRMAALHGGRRDKLEISPNL 287
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 28.9 bits (65), Expect = 2.5
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Query: 170 DGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229
D E E I +RK EL+ + E+ +L +L +E+ ++I
Sbjct: 16 DLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI 75
Query: 230 E--YEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ E+ + E E++ L E+ + L + L EI + +E + L
Sbjct: 76 KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 29.1 bits (66), Expect = 3.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 211 LRA--ANYRLTERNKEL----EDQIEYEQSKFARMEAEIKRLQT 248
LR A+ RLTE +EL +++ E K +E EI+RL++
Sbjct: 436 LREDNADLRLTEIGRELGLVDDERYERFLKKKENIEEEIERLKS 479
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 29.2 bits (65), Expect = 3.0
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 149 IVMKNQKFGSGDEISTILLNTDGELANQERIIDNLRKEQSSL---LLELKETKGRSGKYD 205
I K + S EI N L N+ + I++ + L + LK K + K +
Sbjct: 226 ITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDN 285
Query: 206 TEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKI 265
+E+ ++ T+ ++L D Q E E+ Q E+ + K+ R L + K
Sbjct: 286 SELELKMEKVFQGTD--EQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKT 343
Query: 266 NLDVEIAQ 273
L VE +
Sbjct: 344 ELLVEQGR 351
>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242).
Length = 401
Score = 29.1 bits (65), Expect = 3.0
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 181 DNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARME 240
D L+ + L+ +L +G K +L + L E N+ L+ Q++ +
Sbjct: 102 DQLKLQNQKLVNQLGHARGVFIKTKGRYQKLEELSRHLKEENQCLQIQLDALVQECNEKI 161
Query: 241 AEIKRLQTEMTEQLKDYRELME 262
E + L E+ E L +EL +
Sbjct: 162 EENQELNRELAETLAYQQELND 183
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 28.9 bits (65), Expect = 3.2
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 204 YDTEMNELRAANYRLTERNKELEDQIEYEQSKFAR----MEAEIKRLQTEMTEQLKDYRE 259
T L+A N L + EL+ +++ + + + + +L +E E + E
Sbjct: 57 LRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFE 116
>gnl|CDD|147523 pfam05384, DegS, Sensor protein DegS. This is small family of
Bacillus DegS proteins. The DegS-DegU two-component
regulatory system of Bacillus subtilis controls various
processes that characterize the transition from the
exponential to the stationary growth phase, including
the induction of extracellular degradative enzymes,
expression of late competence genes and down-regulation
of the sigma D regulon. The family also contains one
sequence from Thermoanaerobacter tengcongensis which is
described as a sensory transduction histidine kinase.
Length = 159
Score = 27.9 bits (63), Expect = 3.8
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 178 RIIDNLRKEQSSLLLELKETKGRSGKYDTEMNEL----RAANYRLTERNKEL----EDQI 229
I + R+E L EL+E K + E+++L R A RL E ++ E+ I
Sbjct: 20 EIAEQARQEYERLEQELEEVKEEVSEVIKEVDKLEKQERRARKRLAEVSRNFDKYSEEDI 79
Query: 230 E--YEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKI 265
YE++ +++ + R Q E QL+ R+ +E ++
Sbjct: 80 REAYEKAHDLQVKLALLR-QEEK--QLRKRRDELERRL 114
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.0 bits (65), Expect = 4.0
Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
+E+ + + + +E ++ + L EL+E K R + + E+ +
Sbjct: 210 EELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIES---LEL 266
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279
E K E+++ + +E +I+RL+ E + EL ++ L+ E+ + ++
Sbjct: 267 EALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLE-ELEELLEKLK 325
Query: 280 AEESSLPTY 288
+ E L
Sbjct: 326 SLEERLEKL 334
>gnl|CDD|191696 pfam07168, Ureide_permease, Ureide permease. Heterocyclic nitrogen
compounds may serve as nitrogen sources or nitrogen
transport compounds in plants that are not able to fix
nitrogen. This family represents ureide permease, a
transporter of a wide spectrum of oxo derivatives of
heterocyclic nitrogen compounds, including allantoin,
uric acid and xanthine; it has 10 putative transmembrane
domains with a large cytosolic central domain containing
a 'Walker A' motif. Ureide permease is likely to
transport other purine degradation products when
nitrogen sources are low. Transport is dependent on
glucose and a proton gradient. The family is found in
bacteria, plants and yeast.
Length = 336
Score = 28.3 bits (63), Expect = 4.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 35 GTPSRGSVAPSKKRKLNILEEYESEERTSSGFQVTSSAKGNMEITEVD 82
G+ S A K KLN E Y+SE SS ++ ++E E D
Sbjct: 144 GSAVHSSNAADNKEKLNAFENYQSEFSISSLELMSRMNSEDLENGEAD 191
>gnl|CDD|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner
mitochondrial membrane Mg2+ transporters Mfm1p and
Mrs2p-like family. A eukaryotic subfamily belonging to
the Escherichia coli CorA-Salmonella typhimurium
ZntB_like family (EcCorA_ZntB-like) family of the MIT
superfamily of essential membrane proteins involved in
transporting divalent cations (uptake or efflux) across
membranes. This functionally diverse subfamily includes
the inner mitochondrial membrane Mg2+ transporters
Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human
MRS2/ MRS2L. It also includes a family of Arabidopsis
thaliana proteins (AtMGTs) some of which are localized
to distinct tissues, and not all of which can transport
Mg2+. Structures of the intracellular domain of two
EcCorA_ZntB-like family transporters: Vibrio
parahaemolyticus and Salmonella typhimurium ZntB form
funnel-shaped homopentamers, the tip of the funnel is
formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN, as in some
ZntB family proteins, may be associated with the
transport of different divalent cations, such as zinc
and cadmium. The functional diversity of MIT
transporters may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 323
Score = 28.4 bits (64), Expect = 4.3
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 209 NELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLD 268
R + R + ++E+E +E +++ + +L+ + E + D EL+ + LD
Sbjct: 198 GPERLESSRKEDDHEEVEMLLEA---YLQQVDELLNKLEE-LREYIDDTEELIN--LILD 251
Query: 269 VEIAQYRNLM 278
RN +
Sbjct: 252 S----RRNQL 257
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 28.8 bits (65), Expect = 4.4
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 46/136 (33%)
Query: 171 GELANQERIIDNLRKEQS-SLLLELK------------------ETKGRSGKYDTEMN-- 209
G L Q ++ D + E+ + LLEL+ E + R + + E+
Sbjct: 681 GRLERQ-KMHDKAKAEEQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQA 739
Query: 210 ELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINL-- 267
ELRA R+ EAE+++L+ +L+ + E++I
Sbjct: 740 ELRAKALRIE-------------------AEAELEKLRKRQELELEYEQAQNELEIAKAK 780
Query: 268 ---DVEIAQYRNLMEA 280
D+E ++ ++EA
Sbjct: 781 ELADIEATKFERIVEA 796
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 28.7 bits (64), Expect = 4.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 199 GRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQ----SKFARMEAEIKRLQTEM 250
G +G T LR NYRL + L+ ++E + +KFA M+ ++Q ++
Sbjct: 610 GVTGSIRTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGKMQGQL 665
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 28.5 bits (64), Expect = 4.8
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 12/70 (17%)
Query: 191 LLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEM 250
L EL+E ELR E + E E++++ ++ EI +L E+
Sbjct: 1 LKELRE------ALAELAKELRKLT------EDEKLAEAEEEKAEYDALKEEIDKLDAEI 48
Query: 251 TEQLKDYREL 260
+ EL
Sbjct: 49 DRLEELLDEL 58
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 27.2 bits (61), Expect = 5.4
Identities = 9/78 (11%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKD--YRELMEIK 264
E +AA +L + K+ + ++E + + +++ ++++ ++E ++ +EL +
Sbjct: 12 ESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKV 71
Query: 265 INLDVEIAQYRNLMEAEE 282
+ + + ++ +
Sbjct: 72 QEFQRKQQKLQQDLQKRQ 89
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 27.6 bits (62), Expect = 6.7
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 206 TEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKI 265
T + +L+ L +R EL+ QIE + R E E E TE L++ ++L +
Sbjct: 69 TRLEKLKKELEELKQRIAELQAQIEKLKKG--REETE------ERTELLEELKQLEKELK 120
Query: 266 NLDVEIAQYR 275
L E+ +Y
Sbjct: 121 KLKAELEKYE 130
>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal. This domain is the C-terminal
region of the CASP family of proteins. It is a Golgi
membrane protein which is thought to have a role in
vesicle transport.
Length = 245
Score = 27.8 bits (62), Expect = 7.2
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 217 RLTERNKELEDQIEYEQSKFARMEAEIKRLQTE 249
R +RN ELE+++ + + + E++ L+ +
Sbjct: 90 RFRKRNTELEEELRKQNQTISSLRRELESLKAD 122
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 27.8 bits (63), Expect = 7.2
Identities = 19/91 (20%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 177 ERIIDNLRKEQSSL----LLELK-ETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
+RI++ +KE ++ LLE K E +++ E+ E R +L +R + E+ ++
Sbjct: 41 KRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR 100
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDYRELME 262
+ + E E+++ + E+ ++ ++ + E
Sbjct: 101 KLELLEKREEELEKKEKELEQKQQELEKKEE 131
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 27.6 bits (62), Expect = 7.5
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 201 SGKYDTEMNELRAANYRLTE-------RNKELEDQIEYEQSKFARMEAEIKRLQTEMTE 252
SGK D+ ++ L + L + N++L+D + ++ + EAE RLQ + E
Sbjct: 49 SGK-DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE 106
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 27.9 bits (63), Expect = 7.5
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 160 DEISTILLNTDGELANQERIIDNLR---KEQSSLLLELKETKGRSGKYDTEMNELRAANY 216
+EI ++L + ++ + L ++ + +LK+ Y L A +
Sbjct: 108 NEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKD------LYRELRKSLLANRF 161
Query: 217 RLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRN 276
ELE Q+E + +F++ E+TE DY E EI L+ E+A
Sbjct: 162 SFGPALDELEKQLENLEEEFSQFV--------ELTES-GDYVEAREILDQLEEELAALEQ 212
Query: 277 LME 279
+ME
Sbjct: 213 IME 215
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 28.1 bits (63), Expect = 7.6
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 174 ANQERIIDNLRKEQSSLLLELKETKGRSGKYDT---EMNELRAANYRLTERNKELED 227
A Q RI+D + Q LL L SG DT E+ +L+ AN +L + KE+ +
Sbjct: 375 AEQNRILDAQLRTQRELLNSL-----LSG-GDTLILELTKLKVANSQLEDALKEVNE 425
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 28.0 bits (63), Expect = 7.9
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 202 GKYDTEMNELRAANYRLTERN---KELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYR 258
+Y ++ EL RL E+N +E ++Q E +++ E E+ L++ QL DY+
Sbjct: 351 ERYQADLEEL---EERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKS----QLADYQ 403
Query: 259 ELMEI 263
+ +++
Sbjct: 404 QALDV 408
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 28.0 bits (62), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 210 ELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLK 255
+ L ERN+EL+ ++E Q EA +K+ Q E+ + K
Sbjct: 406 RVNEKTQSLRERNQELQAEVEERQ----EAEAHLKKTQGELIQAAK 447
>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16). Autophagy is a
ubiquitous intracellular degradation system for
eukaryotic cells. During autophagy, cytoplasmic
components are enclosed in autophagosomes and delivered
to lysosomes/vacuoles. ATG16 (also known as Apg16) has
been shown to be bind to Apg5 and is required for the
function of the Apg12p-Apg5p conjugate in the yeast
autophagy pathway.
Length = 194
Score = 27.1 bits (60), Expect = 8.2
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 207 EMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKIN 266
E+ EL L +R L D++E + + ++E I L++E+T + R+L E
Sbjct: 82 ELTELHKKRGELAQRLLLLNDELEQLRREIQQLEKTIAELRSEITSLETEIRDLREELQE 141
Query: 267 LD 268
+
Sbjct: 142 KE 143
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 27.7 bits (63), Expect = 8.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 211 LRA--ANYRLTERNKEL----EDQIEYEQSKFARMEAEIKRLQT 248
LR A+ RLTE+ EL +++ + K +E EI+RL++
Sbjct: 435 LREDNADLRLTEKGYELGLVDDERWARFEEKKEAIEEEIERLKS 478
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 27.6 bits (61), Expect = 9.8
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 164 TILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKY-DTEMNELRAANYRLTERN 222
T L T EL++ I + + LK + G+ ++ + L L +
Sbjct: 771 TAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEE 830
Query: 223 KELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELME 262
++ ++E + + EI + E K +L +
Sbjct: 831 EQFLSRLE----EKSATLGEITHQLLKYEECSKQLAQLTQ 866
>gnl|CDD|218731 pfam05752, Calici_MSP, Calicivirus minor structural protein. This
family consists of minor structural proteins largely
from human calicivirus isolates. Human calicivirus
causes gastroenteritis. The function of this family is
unknown.
Length = 167
Score = 27.0 bits (60), Expect = 9.8
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVE--IAQYRNLMEA 280
I +Q + A++ + + Q M +Q R ++ +L V + ++ ++A
Sbjct: 23 NIVAQQRQLAQLAKQNQLQQDWMNKQEALQRRGQDLSRDLSVNGPALRVQSAVDA 77
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.127 0.339
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,166,716
Number of extensions: 1335991
Number of successful extensions: 2128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1910
Number of HSP's successfully gapped: 380
Length of query: 288
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 192
Effective length of database: 6,679,618
Effective search space: 1282486656
Effective search space used: 1282486656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.0 bits)