RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy21
(288 letters)
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG,
northeas structural genomics consortium, SGC; NMR {Homo
sapiens}
Length = 139
Score = 132 bits (332), Expect = 1e-38
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 53 LEEYESEERTSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGE 112
+ + SA G++ I E+D +GKFV+L N ++QSLGNW++ R+V
Sbjct: 1 MHHHHHHSSGRENLYFQGSASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWRIKRQVLEG 60
Query: 113 VKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDG 171
+ ++KF + AG VTVW+ G H PP +V K Q +G+G+ T+L+N DG
Sbjct: 61 EEIAYKFTPKYILRAGQMVTVWAAG-AGVAHSPPSTLVWKGQSSWGTGESFRTVLVNADG 119
Query: 172 E-LANQERIIDNLRKEQSS 189
E +A + ++ +E +
Sbjct: 120 EEVAMRTVKKSSVMRENEN 138
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus musculus}
SCOP: b.1.16.1
Length = 151
Score = 131 bits (330), Expect = 3e-38
Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 11/153 (7%)
Query: 29 GSSSVAGTPSRGSVAPSKKRKLNILEEYESEERTSSGFQVTSSAKGNMEITEVDPDGKFV 88
GSS +G G + +KKRKL + S F + G + + EVD +GKFV
Sbjct: 1 GSSGSSGQSQGGG-SVTKKRKLE-------SSESRSSFSQHARTSGRVAVEEVDEEGKFV 52
Query: 89 KLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHN 148
+L NK +E+QS+GNWQ+ R+ + +++F ++AG VT+W+ GATH PP +
Sbjct: 53 RLRNKSNEDQSMGNWQIRRQNGDDPLMTYRFPPKFTLKAGQVVTIWASG-AGATHSPPTD 111
Query: 149 IVMKNQK-FGSGDEISTILLNTDGE-LANQERI 179
+V K Q +G G + T L+N+ GE +A ++ +
Sbjct: 112 LVWKAQNTWGCGSSLRTALINSTGEEVAMRKLV 144
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC,
acetylation, chromosomal rearrangement, coiled coil,
intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A
2kpw_A
Length = 123
Score = 127 bits (321), Expect = 3e-37
Identities = 44/120 (36%), Positives = 77/120 (64%), Gaps = 4/120 (3%)
Query: 62 TSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHR 121
+S ++SA GN+ I E+D DGKF++L N ++Q +G W+++RK+ G+ S+K+
Sbjct: 1 SSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKI-GDTSVSYKYTS 59
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGE-LANQERI 179
++AG TVT+W+ N G T PP +++ KNQ +G+G+++ IL N+ GE +A + +
Sbjct: 60 RYVLKAGQTVTIWAANA-GVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTV 118
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens}
SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Length = 121
Score = 124 bits (312), Expect = 6e-36
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 69 TSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAG 128
+ G + + EVD +GKFV+L NK +E+QS+GNWQ+ R+ + +++F ++AG
Sbjct: 2 SHRTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAG 61
Query: 129 GTVTVWSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGE 172
VT+W+ GATH PP ++V K Q +G G+ + T L+N+ GE
Sbjct: 62 QVVTIWAAGA-GATHSPPTDLVWKAQNTWGCGNSLRTALINSTGE 105
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative,
northeast structural genomics consortium, NESG, HR5546A,
LMNB1_human; 2.39A {Homo sapiens}
Length = 144
Score = 120 bits (302), Expect = 3e-34
Identities = 44/125 (35%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 57 ESEERTSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTS 116
+S ++SA GN+ I E+D DGKF++L N ++Q +G W+++RK+ G+ S
Sbjct: 9 SHMASSSVSISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKI-GDTSVS 67
Query: 117 FKFHRTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQ-KFGSGDEISTILLNTDGE-LA 174
+K+ ++AG TVT+W+ N G T PP +++ KNQ +G+G+++ IL N+ GE +A
Sbjct: 68 YKYTSRYVLKAGQTVTIWAANA-GVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVA 126
Query: 175 NQERI 179
+ +
Sbjct: 127 QRSTV 131
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 72.3 bits (178), Expect = 1e-16
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 207 EMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQTEMTEQLKDYRELME 262
++++L+ + ++LED + E + A E E+ ++ M +QL +Y+EL++
Sbjct: 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63
Query: 263 IKINLDVEIAQYRNLMEAEESSL 285
IK+ LD+EI YR L+E EE L
Sbjct: 64 IKLALDMEIHAYRKLLEGEEERL 86
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 69.5 bits (171), Expect = 1e-15
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 207 EMNELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQTEMTEQLKDYRELME 262
E++ L+ N L + +E+E+ E Q R++ EI+ ++ EM L++Y++L+
Sbjct: 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61
Query: 263 IKINLDVEIAQYRNLMEAEESSL 285
+K+ LD+EIA YR L+E EES +
Sbjct: 62 VKMALDIEIATYRKLLEGEESRI 84
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear
membrane LEFT-handed coiled coil, right-handed coiled
coil; HET: MSE; 2.40A {Homo sapiens}
Length = 74
Score = 67.8 bits (166), Expect = 5e-15
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 233 QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLP 286
+ A E E+ ++ M +QL +Y+EL++IK+ LD+EI YR L+E EE L
Sbjct: 11 RRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLR 64
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 68.0 bits (167), Expect = 6e-15
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 210 ELRAANYRLTERNKELEDQIEYE----QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKI 265
+ + + ER +ELED + E + E E+ ++ +M +QL DY +L+++K+
Sbjct: 16 QGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKL 75
Query: 266 NLDVEIAQYRNLMEAEESSL 285
LD+EI+ YR L+E EE L
Sbjct: 76 ALDMEISAYRKLLEGEEERL 95
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, leucine zipper, fusion protein; 1.9A
{Saccharomyces cerevisiae} SCOP: h.1.20.1
Length = 59
Score = 65.8 bits (161), Expect = 1e-14
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+++ + K + ++ L+ E+ K +L+ +K+ LD+EIA YR L+E EES +
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGEESRI 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 61.4 bits (150), Expect = 3e-12
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 24/102 (23%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
IDN++K+ ++L + + + R + + + ++K A +
Sbjct: 52 IDNVKKQCANLQNAIADAEQR---GELALKDA---------------------RNKLAEL 87
Query: 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAE 281
E +++ + +M L++Y+ELM K+ LDVEIA YR L+E E
Sbjct: 88 EEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEGE 129
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 60.2 bits (147), Expect = 9e-12
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 24/102 (23%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
+ + ++SL L+ETKGR Y ++ ++ Q +
Sbjct: 54 LQSQLSMKASLENSLEETKGR---YCMQLAQI---------------------QEMIGSV 89
Query: 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAE 281
E ++ +L+ EM +Q ++Y+ L+++K L+ EIA YR L+E E
Sbjct: 90 EEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLEGE 131
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 48.7 bits (116), Expect = 1e-06
Identities = 19/120 (15%), Positives = 48/120 (40%)
Query: 166 LLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKEL 225
+ + ++ E + L KE+ L + + + + + L + EL
Sbjct: 985 IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Query: 226 EDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
E +++ E+ +E ++L+ E ++ + EL L ++A+ ++A + L
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL 1104
Score = 46.4 bits (110), Expect = 7e-06
Identities = 17/113 (15%), Positives = 48/113 (42%)
Query: 173 LANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE 232
+ +E L+ E+ + ++ + + + + + +L+ + K++ED I
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 233 QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ + ++ E K L+ +++ + E E NL ++ +++ E L
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048
Score = 45.6 bits (108), Expect = 1e-05
Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 169 TDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQ 228
++A + I L+ + + EL+ R ++ N L +L++
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131
Query: 229 IEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
+E E++ + E + + L E+L+ + +E ++ + R ++
Sbjct: 1132 LESEKAARNKAEKQKRDLS----EELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 45.2 bits (107), Expect = 1e-05
Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNK-------E 224
LA +E NL K ++ + E + R K + EL +L + E
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Query: 225 LEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESS 284
L+ QI +++ A+ E E++ + ++ ++ L+ I+ + +E+E+++
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138
Query: 285 L 285
Sbjct: 1139 R 1139
Score = 44.1 bits (104), Expect = 4e-05
Identities = 21/118 (17%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 173 LANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE 232
A E + L ++ L L E + R + + +L+A ++ ++ +LE+Q+E E
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967
Query: 233 QSKFARMEAE-------IKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
++ +++ E IK+++ ++ +L + + L+ ++ + EE
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Score = 41.7 bits (98), Expect = 2e-04
Identities = 25/125 (20%), Positives = 51/125 (40%)
Query: 161 EISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTE 220
+ EL E+ L +E++ L +L+ + + L A L E
Sbjct: 868 RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE 927
Query: 221 RNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEA 280
E+E +IE E+ + +++AE K++Q +M + + E + L +E ++
Sbjct: 928 ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Query: 281 EESSL 285
E +
Sbjct: 988 MEDDI 992
Score = 36.7 bits (85), Expect = 0.008
Identities = 13/114 (11%), Positives = 45/114 (39%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
+L + + + + L + +E + + + + E + +L K+++ Q+
Sbjct: 900 KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ + EA ++LQ E +++ + + ++ + + + E +
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013
Score = 31.3 bits (71), Expect = 0.36
Identities = 12/95 (12%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 166 LLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAA-------NYRL 218
L + EL +++ ++++ L +++E + ++ +AA L
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
Query: 219 TERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQ 253
+E + L+ ++E A + + ++
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 42.4 bits (100), Expect = 1e-04
Identities = 12/103 (11%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 184 RKEQSSLLLELKET---KGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARME 240
++E L +E + K + ++ +L+ + K L +++ + ++
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962
Query: 241 AEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
+++ + ++ + ++L EIA+ R + ++
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005
Score = 42.0 bits (99), Expect = 2e-04
Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 173 LANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYE 232
+ Q + +L ++ ++L + + + T R L+++I
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996
Query: 233 QSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ + + + E K ++ + + +L+ E+ + L++ E+ L
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVS-------ELKEQNTLLKTEKEEL 1042
Score = 39.3 bits (92), Expect = 0.001
Identities = 20/110 (18%), Positives = 44/110 (40%)
Query: 176 QERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSK 235
+E ++K L + + + R R ++ K +E +
Sbjct: 863 REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKL 922
Query: 236 FARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+E +I +LQ ++ EQ K+Y+ L+E NL++ + + ++ L
Sbjct: 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972
Score = 30.8 bits (70), Expect = 0.53
Identities = 14/98 (14%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
Query: 166 LLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKEL 225
+L+ E+A + + + E+ ++ + K + + ++EL+ N L +EL
Sbjct: 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEEL 1042
Query: 226 EDQIEYEQSKFA--------------RMEAEIKRLQTE 249
+I + + ++ +RL+ +
Sbjct: 1043 NRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 2e-04
Identities = 40/241 (16%), Positives = 75/241 (31%), Gaps = 67/241 (27%)
Query: 43 APSKKRKLNILEEYESE-ERTSSGFQVTSSAKGNME-----------ITEVDPDGKFVKL 90
PS Y + +R + QV + K N+ + E+ P K V +
Sbjct: 104 QPSMMT-----RMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELRP-AKNVLI 155
Query: 91 YN-KGSEEQSLGNWQLVRKV--QGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPH 147
GS G + V +V+ F KI W N+ + P
Sbjct: 156 DGVLGS-----GKTWVALDVCLSYKVQCKMDF----KI-------FW-LNL-KNCNSP-- 195
Query: 148 NIVMKNQKFGSGDEISTILLNTDGELANQERIIDNLRKEQSSLLLELKET-KGRSGK--- 203
V++ + +L D ++ N++ S+ EL+ K + +
Sbjct: 196 ETVLEMLQ--------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 204 ------YDTEMNELRAANYR----LTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQ 253
+ + A N LT R K++ D + + ++ L + +
Sbjct: 248 LVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 254 L 254
L
Sbjct: 306 L 306
Score = 28.3 bits (62), Expect = 3.8
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 246 LQTEMTEQLKDYRELME-----IKINLDV-EIAQY-RNLMEAEE 282
+ E E Y++++ N D ++ ++++ EE
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE 50
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 36.2 bits (83), Expect = 0.007
Identities = 14/126 (11%), Positives = 37/126 (29%), Gaps = 5/126 (3%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
D + ++ +L + K +L E K + K + + + A +
Sbjct: 21 DSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279
++ E++ + E + E + + ++ L + + M
Sbjct: 81 KKMSEIKSERELRS-----LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135
Query: 280 AEESSL 285
E
Sbjct: 136 ELEKLA 141
Score = 29.3 bits (65), Expect = 1.2
Identities = 10/97 (10%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 186 EQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKR 245
L+E+ D E++ L + + + E + +E E
Sbjct: 5 THLKQLIEISHL-------DKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLA 57
Query: 246 LQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEE 282
L+ ++++ + ++ ++ ++++ ++ E
Sbjct: 58 LKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRS 94
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 34.9 bits (80), Expect = 0.008
Identities = 19/118 (16%), Positives = 50/118 (42%)
Query: 168 NTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELED 227
+ E+A+ + L++ KE + + E N+L+ + + E+
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69
Query: 228 QIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ + ++EA++K + + ++ + EL K L+ E ++ + ++ E +L
Sbjct: 70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 36.6 bits (85), Expect = 0.008
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 7/118 (5%)
Query: 172 ELANQERIIDNLRKEQS--SLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQI 229
L RI+ L + S+ L ET ++ L A + + +
Sbjct: 887 LLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDL 946
Query: 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLPT 287
++ + E+TE+ + + Y+N + AE L
Sbjct: 947 LSILAQ---LTELNYNGVPELTERKD--TFFAQQWTGVKSSAETYKNTLLAELERLQK 999
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 33.6 bits (76), Expect = 0.048
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMN--ELRAANYRLTERNKELEDQIEYEQSKFA 237
++ LR+E + L +L+ G + + +L A L RN +L + ++ + +
Sbjct: 26 LEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLL 85
Query: 238 RMEAEIKRLQT 248
+ E+ RL
Sbjct: 86 ALREEVDRLGQ 96
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 31.7 bits (72), Expect = 0.21
Identities = 7/64 (10%), Positives = 20/64 (31%)
Query: 224 ELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEES 283
++ ++I ++ ++ I+ LQ + L E L+ + +
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHD 60
Query: 284 SLPT 287
Sbjct: 61 ITGK 64
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP:
b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Length = 98
Score = 30.1 bits (68), Expect = 0.26
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFGSGDE 161
T+ I+AG V W N + PHNIV +
Sbjct: 20 TVTIKAGEEVK-WV-NNKL----SPHNIVFDADGVPADTA 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.30
Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 38/132 (28%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
+ +T G I+D + +L + KG+ +R NY
Sbjct: 1647 NRADNHFKDTYGF-----SILDIVINNPVNLTIHFGGEKGK---------RIRE-NY--- 1688
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDY-----RELMEIKIN-----LDV 269
+ +E +++ E ++ E+ E Y + L+ +
Sbjct: 1689 -------SAMIFETIVDGKLKTE--KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 270 EIAQYRNLMEAE 281
E A + ++++
Sbjct: 1740 EKAAFE-DLKSK 1750
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 31.5 bits (70), Expect = 0.33
Identities = 14/126 (11%), Positives = 38/126 (30%)
Query: 158 SGDEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYR 217
+ + L + +D ++KE+ L +LK
Sbjct: 543 ANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINE 602
Query: 218 LTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNL 277
EL+ +K + + L + +++ ++ + ++ +NL
Sbjct: 603 EALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNL 662
Query: 278 MEAEES 283
A ++
Sbjct: 663 ATAYDN 668
Score = 29.9 bits (66), Expect = 1.2
Identities = 10/105 (9%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 176 QERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSK 235
+ + + + ++ E + ++E++ L K + + +
Sbjct: 533 EPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLT 592
Query: 236 FARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEA 280
+ I +TE + Y L + + + L++
Sbjct: 593 ALAQDGVINEEALSVTELDRVYGGLTTK---VQESLKKQEGLLKN 634
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus
denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A
1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A*
2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A
2idq_A 2ids_A 1sf3_A ...
Length = 105
Score = 29.7 bits (67), Expect = 0.39
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFGSG 159
L ++ G TVT W N E PHN+ G
Sbjct: 34 ELHVKVGDTVT-WI-NREAM----PHNVHFVAGVLGEA 65
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.41
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 19/49 (38%)
Query: 96 EEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHE 144
E+Q+L +K+Q +LK+ A + + AT E
Sbjct: 18 EKQAL------KKLQA----------SLKLYADDSAPALAIK---ATME 47
Score = 29.5 bits (65), Expect = 0.72
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 10/33 (30%)
Query: 242 EIKRLQTEMTEQLKDYRELME----IKINLDVE 270
+K+LQ LK Y + + + I +E
Sbjct: 21 ALKKLQA----SLKLYAD--DSAPALAIKATME 47
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron
transfer protein, electron transport; 2.15A {Paracoccus
versutus} SCOP: b.6.1.1
Length = 106
Score = 29.4 bits (66), Expect = 0.48
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFGSG 159
+ I+AG TV W N E PHN+ K G
Sbjct: 35 EVTIKAGETVY-WV-NGEV----MPHNVAFKKGIVGED 66
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 30.4 bits (68), Expect = 0.68
Identities = 19/91 (20%), Positives = 40/91 (43%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
E L +E ++ LK + ++ KY + ++ L+++ KE E + E+
Sbjct: 182 RAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF 241
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDYRELME 262
+ ++E I L+ E+ Q Y+ + E
Sbjct: 242 AERSVTKLEKSIDDLEDELYAQKLKYKAISE 272
Score = 28.5 bits (63), Expect = 2.7
Identities = 21/114 (18%), Positives = 43/114 (37%)
Query: 172 ELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEY 231
+ +R + + ++ + +L+ + R+ + + EL +T K LE Q E
Sbjct: 154 IAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEK 213
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
K + E EIK L ++ E L+ I + + A++
Sbjct: 214 YSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY 267
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ,
electron transport, oxidoreductase, periplasm,
transport, metal- binding; HET: TRQ; 2.50A {Paracoccus
versutus}
Length = 132
Score = 29.1 bits (65), Expect = 0.69
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFGSG 159
+ I+AG TV W N E PHN+ K G
Sbjct: 61 EVTIKAGETVY-WV-NGEV----MPHNVAFKKGIVGED 92
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.77
Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 206 TEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIK-RLQTEMTEQLKDYRELME-- 262
+ + L + + +E +++ + ME E + + + ++ E + E +E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 263 IKINLDVE 270
N +
Sbjct: 135 KINNRIAD 142
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A
{Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Length = 91
Score = 28.1 bits (63), Expect = 0.95
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFGSGDE 161
T++I+AG TV W PHN+V++ Q S +
Sbjct: 20 TIEIQAGDTVQ-WV-----NNKLAPHNVVVEGQPELSHKD 53
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 29.9 bits (68), Expect = 1.0
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 219 TERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELME 262
+ L+++I + K A ++ +IK + M E + +
Sbjct: 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 29.5 bits (65), Expect = 1.5
Identities = 8/46 (17%), Positives = 26/46 (56%)
Query: 217 RLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELME 262
+ + ELE +++ E + ++ E+K+++ + ++L+D + +
Sbjct: 337 KSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKD 382
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic
patch, double mutant, electron transport; 1.75A {Silene
latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Length = 99
Score = 27.5 bits (61), Expect = 1.8
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFGSGDEISTILLNTDGELANQ 176
L I +G +T + N PHN + ++ +G +++ I + + L
Sbjct: 18 DLSIASGEKIT-FKNNAGF-----PHNDLFDKKEVPAGVDVTKISMPEEDLLNAP 66
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 28.5 bits (63), Expect = 1.9
Identities = 15/106 (14%), Positives = 45/106 (42%)
Query: 180 IDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARM 239
+ L+K+ L+ + + E+ + +L N+EL+++ ++ ++
Sbjct: 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQT 67
Query: 240 EAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSL 285
+ + +LQ + + +D E+ +L I + ++ + +L
Sbjct: 68 DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE CIT PEG; 1.35A
{Bacteroides caccae}
Length = 276
Score = 28.7 bits (63), Expect = 2.1
Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 55 EYESEERTSSGFQVTSSAKGNMEITEVDPDGKFVKLYNKGSE-EQSLGNWQLVRKVQ--G 111
E ++ G + + I EV+ G+ + + E+ ++ + K +
Sbjct: 78 EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN 137
Query: 112 EVKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHNIVM---KNQKFGSGDEISTILLN 168
+ F +I G + + S + G P + + GD + LN
Sbjct: 138 YLVPLFATSEVREIAPNGQL-LNSVKLSG----TPFSSAFLDNGDCLVACGDAHCFVQLN 192
Query: 169 T-DGEL 173
+
Sbjct: 193 LESNRI 198
Score = 27.5 bits (60), Expect = 5.7
Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 20/117 (17%)
Query: 78 ITEVDPDGKFVKLYNKGSEE-----QSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVT 132
+ DG+ + + + L + + V L++ G V
Sbjct: 58 AKMITRDGRELWNIAAPAGCEMQTARILPDGNAL------VAWCGHPSTILEVNMKGEV- 110
Query: 133 VWSFNVEGATHEPPHNIVMKNQKFGSGDEIST-------ILLNTDGELANQERIIDN 182
+ E E PH + K G+ + + +G+L N ++
Sbjct: 111 LSKTEFET-GIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGT 166
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron
transport, metal-binding, transport; 1.40A {Phormidium
laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A
1baw_A 3bqv_A
Length = 105
Score = 27.2 bits (60), Expect = 2.3
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFGSGDEISTILLNTDGELANQ 176
+ + G TV W PPHNI+ +++ + L+ + +
Sbjct: 20 NVTVHPGDTVK-WV-----NNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSP 68
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 27.5 bits (61), Expect = 2.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 217 RLTERNKELEDQIEYEQSKFARMEAEIKRLQT 248
R K+LED++E SK +E E+ RL++
Sbjct: 4 HHHHRMKQLEDKVEELLSKNYHLENEVARLRS 35
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 28.2 bits (63), Expect = 3.5
Identities = 6/58 (10%), Positives = 19/58 (32%)
Query: 230 EYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLMEAEESSLPT 287
+ Q ++ E++ L+ +EL E+ + + + + +
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 28.2 bits (64), Expect = 3.9
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 211 LRA--ANYRLTERNKEL----EDQIEYEQSKFARMEAEIKRLQT 248
LR A+ RL + + D + +S R++ ++ ++T
Sbjct: 455 LRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVMKT 498
>1zme_C Proline utilization transcription activator; complex (transcription
regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET:
DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1
h.1.3.1 PDB: 1ajy_A
Length = 70
Score = 25.5 bits (56), Expect = 6.4
Identities = 5/31 (16%), Positives = 12/31 (38%), Gaps = 7/31 (22%)
Query: 223 KELEDQIEYEQSKFARMEAEIKRLQTEMTEQ 253
++L+ + E RL+ + E+
Sbjct: 47 QQLQKDLN-------DKTEENNRLKALLLER 70
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 26.9 bits (60), Expect = 6.6
Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 205 DTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEI----KRLQTEMTEQLK 255
+ ++ + L ER K E++++ + K+ R+ A+ KR++ E+ + +
Sbjct: 11 EKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKARER 65
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 27.1 bits (61), Expect = 6.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKE 196
+E+ +L+ D + E I++ L ++ L LKE
Sbjct: 49 EELEELLIQADVGVETTEYILERLEEKDGDALESLKE 85
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP:
h.4.17.1 PDB: 1wpa_A 3g7c_A
Length = 140
Score = 26.4 bits (58), Expect = 6.8
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 223 KELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIK 264
K L+ ++ + +R++ E+ + E E + E +K
Sbjct: 62 KSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLK 103
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 27.1 bits (61), Expect = 6.8
Identities = 3/31 (9%), Positives = 7/31 (22%)
Query: 232 EQSKFARMEAEIKRLQTEMTEQLKDYRELME 262
Q+ + L + + E
Sbjct: 98 NQANHVQQLVANSENLRSKRVLLAGWEQFDE 128
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 26.5 bits (58), Expect = 7.9
Identities = 16/126 (12%), Positives = 41/126 (32%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKETKGRSGKYDTEMNELRAANYRLT 219
+ + L E + + + L ELK + + + +
Sbjct: 17 YHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE 76
Query: 220 ERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYRELMEIKINLDVEIAQYRNLME 279
E K L D+++ +++ E + +L+ + + + + E+ Q + +E
Sbjct: 77 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVE 136
Query: 280 AEESSL 285
S
Sbjct: 137 ELLSKN 142
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 27.1 bits (59), Expect = 8.1
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
Query: 206 TEMNELRAA-------NYR---LTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLK 255
T M +L+ N+R L +++E++ + EAE++R M E +
Sbjct: 282 THMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRR----MQEMIA 337
Query: 256 DYRELMEIKI 265
+ M++++
Sbjct: 338 RMQAQMQMQM 347
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings,
fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus
gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 26.8 bits (58), Expect = 9.0
Identities = 16/85 (18%), Positives = 34/85 (40%)
Query: 193 ELKETKGRSGKYDTEMNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTE 252
L+ + Y ELR L +R ++I+ Q+ E+KRL+ ++
Sbjct: 98 GLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157
Query: 253 QLKDYRELMEIKINLDVEIAQYRNL 277
+++ + + V+ Y N+
Sbjct: 158 KIRACKGSCARSFDYQVDKEGYDNI 182
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 27.2 bits (59), Expect = 9.0
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 10/120 (8%)
Query: 153 NQKFGSGDEISTILLNTDGELANQERIIDNLRKEQSSLLLEL----KETKGRSGKYDTEM 208
N K SG + ++ + + N+ + N E + +
Sbjct: 42 NYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA 101
Query: 209 NELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYREL---MEIKI 265
N R++E +L +IE + K I+ LQ + QL D + L ++IKI
Sbjct: 102 NNRDNTYNRVSE---DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI 158
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 25.0 bits (54), Expect = 9.2
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 212 RAANYRLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQLKDYREL 260
RA R + K LE Q+ + + E +L+ ++ + ++ R L
Sbjct: 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding,
eukaryotic regulatory protein, transcription/DNA
complex; HET: DNA; 2.20A {Saccharomyces cerevisiae}
SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Length = 63
Score = 24.8 bits (54), Expect = 9.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 217 RLTERNKELEDQIEYEQSKFARMEAEIKRLQTEMTEQ 253
R +R K+LED++E SK +E E+ RL+ + E+
Sbjct: 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.127 0.339
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,166,338
Number of extensions: 243752
Number of successful extensions: 841
Number of sequences better than 10.0: 1
Number of HSP's gapped: 783
Number of HSP's successfully gapped: 174
Length of query: 288
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,105,140
Effective search space: 800502300
Effective search space used: 800502300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (25.7 bits)