RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy21
(288 letters)
>d1ifra_ b.1.16.1 (A:) Lamin A/C globular tail domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 113
Score = 114 bits (288), Expect = 5e-33
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 69 TSSAKGNMEITEVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAG 128
+ G + + EVD +GKFV+L NK +E+QS+GNWQ+ R+ + +++F ++AG
Sbjct: 2 SHRTSGRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAG 61
Query: 129 GTVTVWSFNVEGATHEPPHNIVMKNQK-FGSGDEISTILLNTDGE 172
VT+W+ GATH PP ++V K Q +G G+ + T L+N+ GE
Sbjct: 62 QVVTIWAAGA-GATHSPPTDLVWKAQNTWGCGNSLRTALINSTGE 105
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant
italica [TaxId: 3691]}
Length = 99
Score = 30.9 bits (69), Expect = 0.044
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 122 TLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFGSGDEISTILLNTDGELANQ 176
I G + + PHNIV SG + S I ++ + L +
Sbjct: 18 EFSISPGEKIVFKN------NAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAK 66
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 302
Score = 27.8 bits (60), Expect = 1.5
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 25 VSGAGSSSVAGTPSRGSVAPSKKRKLNILEEYESEERTSSGFQVTSSAKGNMEITEVDPD 84
+SGAG+ V L + E + GF M +T ++
Sbjct: 236 LSGAGNFMDPSKKHLRKVPNGY------LRFHFGAENSLGGFAYVEITPKEMSVTYIEAS 289
Query: 85 GK 86
GK
Sbjct: 290 GK 291
>d1o75a1 b.1.20.1 (A:207-332) Tp47 lipoprotein, middle and
C-terminal domains {Treponema pallidum [TaxId: 160]}
Length = 126
Score = 25.8 bits (56), Expect = 3.2
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 144 EPPHNIVMK------NQKFGSGDEISTILLNTDGELANQERIIDNLRKEQS 188
E PH++V+ + +FGS E S +L DG + ID + +
Sbjct: 1 ESPHDLVVDTVGTGYHSRFGSDAEASVMLKRADGSELSHREFIDYVMNFNT 51
>d1am2a_ b.86.1.2 (A:) GyrA intein {Mycobacterium xenopi [TaxId:
1789]}
Length = 199
Score = 26.3 bits (57), Expect = 4.3
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 80 EVDPDGKFVKLYNKGSEEQSLGNWQLVRKVQGEVKTS-FKFHRTLKIEAGGTVTVWSFNV 138
E P V + ++ + + E+ F + + + G V+S V
Sbjct: 124 EFAPTTYTVGVPGLVRFLEAHHRDPDAKAIADELTDGRFYYAKVASVTDAGVQPVYSLRV 183
Query: 139 EGATH 143
+ A H
Sbjct: 184 DTADH 188
>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor,
FtsY {Thermotoga maritima [TaxId: 2336]}
Length = 81
Score = 24.7 bits (54), Expect = 4.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 160 DEISTILLNTDGELANQERIIDNLRKEQSSLLLELKE 196
+E+ +L+ D + E I++ L ++ L LKE
Sbjct: 37 EELEELLIQADVGVETTEYILERLEEKDGDALESLKE 73
>d1f9za_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase)
{Escherichia coli [TaxId: 562]}
Length = 135
Score = 25.4 bits (54), Expect = 5.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 82 DPDGKFVKLYNKGSEEQSLGN 102
DPDG ++L + + LGN
Sbjct: 115 DPDGYKIELIEEKDAGRGLGN 135
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Escherichia coli [TaxId:
562]}
Length = 84
Score = 24.3 bits (53), Expect = 6.1
Identities = 2/39 (5%), Positives = 17/39 (43%)
Query: 147 HNIVMKNQKFGSGDEISTILLNTDGELANQERIIDNLRK 185
+ + Q + ++ ++++ + + E+ + ++
Sbjct: 35 QGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKA 73
>d1i7qa_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Serratia marcescens [TaxId: 615]}
Length = 517
Score = 26.1 bits (56), Expect = 6.3
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 32 SVAGTPSRGSVAPSKKRKLNILEEYESEERTS-SGFQVTSSAKGNME 77
+++G P K R + ++ S R S G +A N++
Sbjct: 422 TLSGAP--------KVRAMQLIAALRSTRRGSYGGRVGYFTAVRNLD 460
>d1l5ja2 c.8.2.1 (A:161-372) Aconitase B, second N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 212
Score = 25.5 bits (56), Expect = 6.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 8 RIEEVQKKRKTELLCMNVSGAGSSSVAGTPS 38
+IE +Q+K +V G GSS + T S
Sbjct: 62 QIEALQQKGFPLAYVGDVVGTGSSRKSATNS 92
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 24.6 bits (53), Expect = 6.7
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 113 VKTSFKFHRTLKIEAGGTVTVWSFNVEGATHEPPHNIVMKNQKFG 157
VK + + + TV ++ T P + K
Sbjct: 12 VKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVK 56
>d2o8ra2 d.322.1.2 (A:113-317) Polyphosphate kinase, PPK
{Porphyromonas gingivalis [TaxId: 837]}
Length = 205
Score = 25.3 bits (55), Expect = 7.8
Identities = 9/81 (11%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 208 MNELRAANYRLTERNKELEDQIEYEQSKFARMEAEIKR----------LQTEMTEQLKDY 257
+ + + +++ R+ +L + + + ++K M +++ Y
Sbjct: 110 YEVMDSYSIKVS-RDADLLLDAQRPEDLPGEIRKKVKTRKLGAPTRFMYDGRMPDEVLRY 168
Query: 258 -RELMEIKINLDVEIAQYRNL 277
+I + Y NL
Sbjct: 169 ICSSCDIDPEEAIRSGNYVNL 189
>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L
(RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 127
Score = 24.6 bits (53), Expect = 8.2
Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 29 GSSSVAGTPSRGSVAPSKKRKLNILEEYESEERTSSGFQVTSSAKGNME------ITEVD 82
GSS + G P +++ +L + G + + I +
Sbjct: 4 GSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSII 63
Query: 83 PDGKFVK--LYNKGSEEQSLGNWQLVRKVQGEVKTSFKFHRTLKIEAGGTVT 132
G K + ++ L+ K E + + +++ G +
Sbjct: 64 HGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQ 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.127 0.339
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 996,435
Number of extensions: 45828
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 25
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.1 bits)