BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy210
(915 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 476 bits (1225), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/331 (67%), Positives = 267/331 (80%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
VQQQ+G IVRTIA G+++G++R V D PI PVG+ TLGRI+NVLG+P+D KGEI
Sbjct: 42 VQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGEATLGRIMNVLGEPVDMKGEI 101
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
+++ IH P + + +LETGIKVIDL+CPF TVNMME
Sbjct: 102 GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME 161
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVAL 761
LIRNIAIEH G SVF GVGER+REGNDFYHEM +SNV+DKVSL+YGQMNEP GNRLRVAL
Sbjct: 162 LIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVAL 221
Query: 762 TGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQER 821
TGL++AE+FR+ G+DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQER
Sbjct: 222 TGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQER 281
Query: 822 ISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS 881
I+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD+T+VLSRQIA LGIYPA+DPL+S S
Sbjct: 282 ITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTS 341
Query: 882 KQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+QLDP +VG+EHY A V+ LQ+Y+ELKD
Sbjct: 342 RQLDPLVVGQEHYDTARGVQSILQRYQELKD 372
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 140/328 (42%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G E E+PVG LGRI+N GE +D K + + R + + AP +
Sbjct: 61 GLRRGLDVKDLEHPIEVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELS 120
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID M P KG + + G GKT ++ I N + ++ +G
Sbjct: 121 NSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 180
Query: 295 QKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D + TG T+ E FRD G+D L+
Sbjct: 181 ERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLF 240
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P V Y + + + + +++I +
Sbjct: 241 VDNIYRYTLAGTEVSALLGR------MPSAVGY-------QPTLAEEMGVLQERITSTKT 287
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + + PA++ S SR
Sbjct: 288 GSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPL 347
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + ++ +L +Y+EL+
Sbjct: 348 VVGQEHYDTARG----VQSILQRYQELK 371
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/402 (54%), Positives = 286/402 (71%), Gaps = 2/402 (0%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
AV++ +L +G K CT +I E+PVG LLGR+VN+ G ID K VE I
Sbjct: 73 AVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAI 132
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
APG+++R+SV++P+ TG K++DSMIPIG+GQRELIIGDRQTGKT +AID IINQ++ +
Sbjct: 133 APGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIK 192
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDL 347
CIYV IGQK S++ NV+ KL+ + + QY++PY GC +GEYFRD
Sbjct: 193 CIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDR 252
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEK- 406
G+D LIIYDDL+K A AYRQISLLLRRPPGREAFPGDVFYLHSRLLER++++N ++E
Sbjct: 253 GEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAF 312
Query: 407 -KKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGL 465
K G+LTA PIIET GDV++F+PTNVISITDGQIFL+TNLFN+ RPA+N G+
Sbjct: 313 TKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGI 372
Query: 466 SVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMK 525
SVSRVGGAAQ KI+KKLSG IR LAQYREL +FS+F+SDLD T+ QL +G+K++ L+K
Sbjct: 373 SVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLK 432
Query: 526 QKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFEINIIKY 567
QK + S+ + + + + + +I FE ++ Y
Sbjct: 433 QKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAY 474
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 138/319 (43%), Gaps = 25/319 (7%)
Query: 611 TGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGI 670
TG+ + PVG LGR++N LG PID KG ++ S + + P + + ++TG
Sbjct: 91 TGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGY 150
Query: 671 KVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFY 730
K +D + P T ++ I N C +++ +G+++ ++
Sbjct: 151 KAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKC-IYVAIGQKASTISNVV 209
Query: 731 HEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLA 790
+++E L ++ +E + + G ++ E FR+ G+D L+ D++ + +A
Sbjct: 210 RKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVA 269
Query: 791 GTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST---------------KNGTITSVQA 835
++S +L R P + + +L ER + K G++T++
Sbjct: 270 YRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPI 329
Query: 836 IYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895
I A D++ P+ + D I L + GI PA++P S S+ + G K
Sbjct: 330 IETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSR-----VGGAAQTK 384
Query: 896 V----ANEVKFYLQKYKEL 910
+ + ++ L +Y+EL
Sbjct: 385 IMKKLSGGIRTALAQYREL 403
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/428 (50%), Positives = 290/428 (67%), Gaps = 14/428 (3%)
Query: 147 VLSGQI----NGTTGYEEAAAQGFVAVLI-DDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201
V++G++ NG G + + V V+I + +G + T +I E+PVG LLGR
Sbjct: 47 VMAGELLEFENGVMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGR 106
Query: 202 IVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQREL 261
+VN G+ +D + +E APG+MDR+SV+EPL TGIK+IDSMIPIG+GQREL
Sbjct: 107 VVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQREL 166
Query: 262 IIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXX 321
IIGDRQTGKTTIAIDTIINQK ++VICIYV IGQK S++ V+ L+ ++ +DY
Sbjct: 167 IIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226
Query: 322 XXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAF 381
Y++PY GC +GEYF G+ L++YDDL+K A AYR++SLLLRRPPGREA+
Sbjct: 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAY 286
Query: 382 PGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISI 441
PGDVFYLHSRLLER++K++ K G+LTA P IET GDV+++IPTNVISI
Sbjct: 287 PGDVFYLHSRLLERAAKLSD---------EKGGGSLTALPFIETQAGDVSAYIPTNVISI 337
Query: 442 TDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSK 501
TDGQIFL+++LF S RPA+NVG+SVSRVGGAAQ K +KK++G +R+ LAQYREL++F++
Sbjct: 338 TDGQIFLESDLFYSGVRPAVNVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELQAFAQ 397
Query: 502 FSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
F SDLD T+ +L GE+ ++KQ H+ + E N F IP++ + FE
Sbjct: 398 FGSDLDKATQAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFE 457
Query: 562 INIIKYFR 569
++ + R
Sbjct: 458 EELLSFMR 465
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 148/332 (44%), Gaps = 6/332 (1%)
Query: 584 QQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINS 643
Q + E+ V + G I+ T V TG+ + PVG+ LGR++N LG P+D +G I +
Sbjct: 64 QNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIET 123
Query: 644 KKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELI 703
+ PI + P ++ + L+TGIK ID + P T ++ I
Sbjct: 124 AEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTI 183
Query: 704 RNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
N + C +++ +G++ +++ + LD ++ +EP+ G
Sbjct: 184 INQKGQDVIC-IYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAG 242
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
++ E F GK L+ D++ + A E+S +L R P Y + +L ER +
Sbjct: 243 CAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAA 302
Query: 824 STKN----GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G++T++ I A D++ P+ + D I L + G+ PA++ S
Sbjct: 303 KLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGIS 362
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKELK 911
S+ + + KVA ++ L +Y+EL+
Sbjct: 363 VSRVGGAAQI-KAMKKVAGTLRLDLAQYRELQ 393
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/329 (60%), Positives = 250/329 (75%), Gaps = 1/329 (0%)
Query: 585 QIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSK 644
+G+N+VR +A +T+G+ R VDTG PI PVG TLGR+ NVLG+PID +GE+N++
Sbjct: 47 HLGDNVVRCVAMASTDGLVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAE 106
Query: 645 KKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIR 704
++ PIH P+F + ILETGIKVIDLL P+ TV + ELI
Sbjct: 107 ERHPIHRPAPEFEELSTADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 166
Query: 705 NIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGL 764
N+A EH G SVF GVGER+REGND YHEMK+S V+ K S+++GQMNEP G RLRVALTGL
Sbjct: 167 NVAQEHGGLSVFAGVGERTREGNDLYHEMKDSGVISKTSMVFGQMNEPPGARLRVALTGL 226
Query: 765 SIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA EMG+LQERI+
Sbjct: 227 TMAEYFRDREGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERIT 286
Query: 824 STKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQ 883
STK G+ITS+QAIYVPADD TDP+P+TTF HLD+T L R++AE+GIYPA+DPL S S+
Sbjct: 287 STKKGSITSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLAEMGIYPAVDPLASTSRI 346
Query: 884 LDPYIVGEEHYKVANEVKFYLQKYKELKD 912
L P +VGEEHY+VA V+ LQ+Y +L+D
Sbjct: 347 LSPAVVGEEHYRVARGVQQVLQRYNDLQD 375
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 140/337 (41%), Gaps = 26/337 (7%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V + L +G + T +PVG LGR+ N GE ID + + + R + + A
Sbjct: 56 VAMASTDGLVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPIHRPA 115
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN--QKNKNV 286
P + + +E L TGIK ID + P KG + + G GKT + I +IN +
Sbjct: 116 PEFEELSTADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL-IQELINNVAQEHGG 174
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRD 346
+ ++ +G++ ++ +++K + + TG T+ EYFRD
Sbjct: 175 LSVFAGVGERTREGNDLYHEMKDSGVISKTSMVFGQMNEPPGARLRVALTGLTMAEYFRD 234
Query: 347 L-GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLE 405
GQD L+ D++ + A ++S LL R P + + +L ER
Sbjct: 235 REGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQER---------- 284
Query: 406 KKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGL 465
I + G++T+ I D T P + D L+ L PA++
Sbjct: 285 ---ITSTKKGSITSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLAEMGIYPAVDPLA 341
Query: 466 SVSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
S SR V G Y++ + ++ +L +Y +L+
Sbjct: 342 STSRILSPAVVGEEHYRVAR----GVQQVLQRYNDLQ 374
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/337 (61%), Positives = 252/337 (74%), Gaps = 6/337 (1%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GEN VRTIA T G+ R V+DTG PI PVG TLGRI+NV+G+PID +G I
Sbjct: 83 VAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPI 142
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
SK + PIH PP F+ Q + ILETGIKV+DLL P+ TV + E
Sbjct: 143 KSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQE 202
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD-----KVSLIYGQMNEPSGNR 756
LI NIA H G SVF GVGER+REGND Y EMKE+ V++ KV+L++GQMNEP G R
Sbjct: 203 LINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGAR 262
Query: 757 LRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815
RVALTGL+IAE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +M
Sbjct: 263 ARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM 322
Query: 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
G LQERI++TK G++TSVQA+YVPADDLTDP+P+TTF HLD+T VLSR I+ELGIYPA+D
Sbjct: 323 GLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 382
Query: 876 PLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
PL+S S+ LD +VG+EHY VA++V+ LQ YK L+D
Sbjct: 383 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQD 419
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 31/342 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +G+K T +PVG E LGRI+N GE ID + K R+ +
Sbjct: 95 IAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADP 154
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN--QKNKNV 286
P ++ + E L TGIK +D + P +G + + G GK T+ I +IN K
Sbjct: 155 PSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGK-TVFIQELINNIAKAHGG 213
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYIS-----PYTGCTIG 341
++ +G++ ++ ++K ++ + TG TI
Sbjct: 214 FSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIA 273
Query: 342 EYFRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
EYFRD GQD L+ D++ + A ++S LL R P V Y + +
Sbjct: 274 EYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGY-------QPTLAT 320
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
L +++I G++T+ + D+T P + D L + PA
Sbjct: 321 DMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 380
Query: 461 INVGLSVSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
++ S SR V G Y + K ++ L Y+ L+
Sbjct: 381 VDPLDSKSRLLDAAVVGQEHYDVASK----VQETLQTYKSLQ 418
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/337 (61%), Positives = 252/337 (74%), Gaps = 6/337 (1%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GEN VRTIA T G+ R V+DTG PI PVG TLGRI+NV+G+PID +G I
Sbjct: 45 VAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPI 104
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
SK + PIH PP F+ Q + ILETGIKV+DLL P+ TV + E
Sbjct: 105 KSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQE 164
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD-----KVSLIYGQMNEPSGNR 756
LI NIA H G SVF GVGER+REGND Y EMKE+ V++ KV+L++GQMNEP G R
Sbjct: 165 LINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGAR 224
Query: 757 LRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815
RVALTGL+IAE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +M
Sbjct: 225 ARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM 284
Query: 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
G LQERI++TK G++TSVQA+YVPADDLTDP+P+TTF HLD+T VLSR I+ELGIYPA+D
Sbjct: 285 GLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 344
Query: 876 PLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
PL+S S+ LD +VG+EHY VA++V+ LQ YK L+D
Sbjct: 345 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQD 381
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 31/342 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +G+K T +PVG E LGRI+N GE ID + K R+ +
Sbjct: 57 IAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADP 116
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN--QKNKNV 286
P ++ + E L TGIK +D + P +G + + G GK T+ I +IN K
Sbjct: 117 PSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGK-TVFIQELINNIAKAHGG 175
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYIS-----PYTGCTIG 341
++ +G++ ++ ++K ++ + TG TI
Sbjct: 176 FSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIA 235
Query: 342 EYFRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
EYFRD GQD L+ D++ + A ++S LL R P V Y + +
Sbjct: 236 EYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGY-------QPTLAT 282
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
L +++I G++T+ + D+T P + D L + PA
Sbjct: 283 DMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 342
Query: 461 INVGLSVSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
++ S SR V G Y + K ++ L Y+ L+
Sbjct: 343 VDPLDSKSRLLDAAVVGQEHYDVASK----VQETLQTYKSLQ 380
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/337 (61%), Positives = 252/337 (74%), Gaps = 6/337 (1%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GEN VRTIA T G+ R V+DTG PI PVG TLGRI+NV+G+PID +G I
Sbjct: 56 VAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPI 115
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
SK + PIH PP F+ Q + ILETGIKV+DLL P+ TV + E
Sbjct: 116 KSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQE 175
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD-----KVSLIYGQMNEPSGNR 756
LI NIA H G SVF GVGER+REGND Y EMKE+ V++ KV+L++GQMNEP G R
Sbjct: 176 LINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGAR 235
Query: 757 LRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815
RVALTGL+IAE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +M
Sbjct: 236 ARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM 295
Query: 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
G LQERI++TK G++TSVQA+YVPADDLTDP+P+TTF HLD+T VLSR I+ELGIYPA+D
Sbjct: 296 GLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 355
Query: 876 PLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
PL+S S+ LD +VG+EHY VA++V+ LQ YK L+D
Sbjct: 356 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQD 392
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 31/342 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +G+K T +PVG E LGRI+N GE ID + K R+ +
Sbjct: 68 IAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADP 127
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN--QKNKNV 286
P ++ + E L TGIK +D + P +G + + G GK T+ I +IN K
Sbjct: 128 PSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGK-TVFIQELINNIAKAHGG 186
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYIS-----PYTGCTIG 341
++ +G++ ++ ++K ++ + TG TI
Sbjct: 187 FSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIA 246
Query: 342 EYFRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
EYFRD GQD L+ D++ + A ++S LL R P V Y + +
Sbjct: 247 EYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGY-------QPTLAT 293
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
L +++I G++T+ + D+T P + D L + PA
Sbjct: 294 DMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 353
Query: 461 INVGLSVSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
++ S SR V G Y + K ++ L Y+ L+
Sbjct: 354 VDPLDSKSRLLDAAVVGQEHYDVASK----VQETLQTYKSLQ 391
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/337 (61%), Positives = 252/337 (74%), Gaps = 6/337 (1%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GEN VRTIA T G+ R V+DTG PI PVG TLGRI+NV+G+PID +G I
Sbjct: 50 VAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPI 109
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
SK + PIH PP F+ Q + ILETGIKV+DLL P+ TV + E
Sbjct: 110 KSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQE 169
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD-----KVSLIYGQMNEPSGNR 756
LI NIA H G SVF GVGER+REGND Y EMKE+ V++ KV+L++GQMNEP G R
Sbjct: 170 LINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGAR 229
Query: 757 LRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815
RVALTGL+IAE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +M
Sbjct: 230 ARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM 289
Query: 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
G LQERI++TK G++TSVQA+YVPADDLTDP+P+TTF HLD+T VLSR I+ELGIYPA+D
Sbjct: 290 GLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 349
Query: 876 PLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
PL+S S+ LD +VG+EHY VA++V+ LQ YK L+D
Sbjct: 350 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQD 386
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 31/342 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +G+K T +PVG E LGRI+N GE ID + K R+ +
Sbjct: 62 IAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADP 121
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN--QKNKNV 286
P ++ + E L TGIK +D + P +G + + G GK T+ I +IN K
Sbjct: 122 PSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGK-TVFIQELINNIAKAHGG 180
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYIS-----PYTGCTIG 341
++ +G++ ++ ++K ++ + TG TI
Sbjct: 181 FSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIA 240
Query: 342 EYFRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
EYFRD GQD L+ D++ + A ++S LL R P V Y + +
Sbjct: 241 EYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGY-------QPTLAT 287
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
L +++I G++T+ + D+T P + D L + PA
Sbjct: 288 DMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 347
Query: 461 INVGLSVSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
++ S SR V G Y + K ++ L Y+ L+
Sbjct: 348 VDPLDSKSRLLDAAVVGQEHYDVASK----VQETLQTYKSLQ 385
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/337 (61%), Positives = 252/337 (74%), Gaps = 6/337 (1%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GEN VRTIA T G+ R V+DTG PI PVG TLGRI+NV+G+PID +G I
Sbjct: 45 VAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPI 104
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
SK + PIH PP F+ Q + ILETGIKV+DLL P+ TV + E
Sbjct: 105 KSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQE 164
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD-----KVSLIYGQMNEPSGNR 756
LI NIA H G SVF GVGER+REGND Y EMKE+ V++ KV+L++GQMNEP G R
Sbjct: 165 LINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGAR 224
Query: 757 LRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815
RVALTGL+IAE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +M
Sbjct: 225 ARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM 284
Query: 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
G LQERI++TK G++TSVQA+YVPADDLTDP+P+TTF HLD+T VLSR I+ELGIYPA+D
Sbjct: 285 GLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 344
Query: 876 PLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
PL+S S+ LD +VG+EHY VA++V+ LQ YK L+D
Sbjct: 345 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQD 381
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 31/342 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +G+K T +PVG E LGRI+N GE ID + K R+ +
Sbjct: 57 IAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADP 116
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN--QKNKNV 286
P ++ + E L TGIK +D + P +G + + G GK T+ I +IN K
Sbjct: 117 PSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGK-TVFIQELINNIAKAHGG 175
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYIS-----PYTGCTIG 341
++ +G++ ++ ++K ++ + TG TI
Sbjct: 176 FSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIA 235
Query: 342 EYFRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
EYFRD GQD L+ D++ + A ++S LL R P V Y + +
Sbjct: 236 EYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGY-------QPTLAT 282
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
L +++I G++T+ + D+T P + D L + PA
Sbjct: 283 DMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 342
Query: 461 INVGLSVSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
++ S SR V G Y + K ++ L Y+ L+
Sbjct: 343 VDPLDSKSRLLDAAVVGQEHYDVASK----VQETLQTYKSLQ 380
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/337 (61%), Positives = 251/337 (74%), Gaps = 6/337 (1%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GEN VRTIA T G+ R V+DTG PI PVG TLGRI+NV+G+PID +G I
Sbjct: 56 VAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPI 115
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
SK + PIH PP F+ Q + ILETGIKV+DLL P+ TV + E
Sbjct: 116 KSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQE 175
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD-----KVSLIYGQMNEPSGNR 756
LI NIA H G SVF GVGER+REGND Y EMKE+ V++ KV+L++GQMNEP G R
Sbjct: 176 LINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGAR 235
Query: 757 LRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815
RVALTGL+IAE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSA GYQPTLA +M
Sbjct: 236 ARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGYQPTLATDM 295
Query: 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
G LQERI++TK G++TSVQA+YVPADDLTDP+P+TTF HLD+T VLSR I+ELGIYPA+D
Sbjct: 296 GLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 355
Query: 876 PLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
PL+S S+ LD +VG+EHY VA++V+ LQ YK L+D
Sbjct: 356 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSLQD 392
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 139/342 (40%), Gaps = 31/342 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +G+K T +PVG E LGRI+N GE ID + K R+ +
Sbjct: 68 IAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADP 127
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN--QKNKNV 286
P ++ + E L TGIK +D + P +G + + G GK T+ I +IN K
Sbjct: 128 PSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGK-TVFIQELINNIAKAHGG 186
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYIS-----PYTGCTIG 341
++ +G++ ++ ++K ++ + TG TI
Sbjct: 187 FSVFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIA 246
Query: 342 EYFRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
EYFRD GQD L+ D++ + A ++S LL R P + + +
Sbjct: 247 EYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGY-------------QPTLAT 293
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
L +++I G++T+ + D+T P + D L + PA
Sbjct: 294 DMGLLQERITTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 353
Query: 461 INVGLSVSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
++ S SR V G Y + K ++ L Y+ L+
Sbjct: 354 VDPLDSKSRLLDAAVVGQEHYDVASK----VQETLQTYKSLQ 391
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/338 (60%), Positives = 248/338 (73%), Gaps = 7/338 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GE+ VRTIA T G+ R V+D+G PI PVG TLGRI+NV+G+PID +G I
Sbjct: 49 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPI 108
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
+K+ +PIH P+F IL TGIKV+DLL P+ TV +ME
Sbjct: 109 KTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 168
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD------KVSLIYGQMNEPSGN 755
LI N+A H G SVF GVGER+REGND YHEM ES V++ KV+L+YGQMNEP G
Sbjct: 169 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 228
Query: 756 RLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814
R RVALTGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +
Sbjct: 229 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 288
Query: 815 MGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
MG +QERI++TK G+ITSVQAIYVPADDLTDP+P+TTF HLD+T VLSR IAELGIYPA+
Sbjct: 289 MGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 348
Query: 875 DPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
DPL+S S+ +DP IVG EHY VA V+ LQ YK L+D
Sbjct: 349 DPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQD 386
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 143/344 (41%), Gaps = 34/344 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +GQK + +IPVG E LGRI+N GE ID + K + A
Sbjct: 61 IAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEA 120
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVI 287
P ++ E L+TGIK +D + P KG + + G GKT + ++ I N K
Sbjct: 121 PEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 180
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISP--------YTGCT 339
++ +G++ ++ +++ ++ Q P TG T
Sbjct: 181 SVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYG--QMNEPPGARARVALTGLT 238
Query: 340 IGEYFRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSK 398
+ EYFRD GQD L+ D++ + A ++S LL R P V Y + + +
Sbjct: 239 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGYQPTLATDMGTM 292
Query: 399 INKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYR 458
+++I G++T+ I D+T P + D L +
Sbjct: 293 -------QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 345
Query: 459 PAINVGLSVSRVG-----GAAQYKIVKKLSGDIRIMLAQYRELE 497
PA++ S SR+ G+ Y + + ++ +L Y+ L+
Sbjct: 346 PAVDPLDSTSRIMDPNIVGSEHYDVAR----GVQKILQDYKSLQ 385
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/399 (49%), Positives = 273/399 (68%), Gaps = 9/399 (2%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+++ + K++ +G ++I E+PVG ELLGR+VN GE +D K KN +E A
Sbjct: 87 IILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKA 146
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288
PG++ R+ V+ PL TGIK+IDS IPIG+GQRELIIGDRQTGKT IAIDTIINQK + V C
Sbjct: 147 PGVIYRKPVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYC 206
Query: 289 IYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLG 348
IYV IGQK S++ +I+KL+ Y +Y QYI+PY GC GEYF G
Sbjct: 207 IYVAIGQKKSAIARIIDKLRQYGAXEYTTVVVASASDPASLQYIAPYAGCAXGEYFAYSG 266
Query: 349 QDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKK 408
+D L++YDDL+KHA AYRQ+SLL RRPPGREA+PGD+FYLHSRLLER+ ++N
Sbjct: 267 RDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIFYLHSRLLERAVRLNDKL----- 321
Query: 409 IFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS 468
G+LTA PI+ET D++++IPTNVISITDGQI+L+ LF + RPAINVGLSVS
Sbjct: 322 ----GGGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVS 377
Query: 469 RVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKP 528
RVGG+AQ K K+++G +RI LAQYRELE+F++F+++LD T+ Q+ G+++ L+KQ+
Sbjct: 378 RVGGSAQIKAXKQVAGXLRIDLAQYRELETFAQFATELDPATRAQIIRGQRLXELLKQEQ 437
Query: 529 HENYSIVEXXXXXXXXKNRFFFKIPIKQIELFEINIIKY 567
+ + E + +P++++ FE +++
Sbjct: 438 YSPXPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRF 476
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 143/332 (43%), Gaps = 14/332 (4%)
Query: 588 ENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
E+ V I G IK V + I PVG+ LGR++N LG+P+D KG IN+K
Sbjct: 81 EDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFR 140
Query: 648 PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIA 707
PI P + + L+TGIK ID P T ++ I N
Sbjct: 141 PIEIKAPGVIYRKPVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAIDTIINQK 200
Query: 708 IEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIA 767
+ C +++ +G++ ++++ + +++ ++P+ + G +
Sbjct: 201 GQGVYC-IYVAIGQKKSAIARIIDKLRQYGAXEYTTVVVASASDPASLQYIAPYAGCAXG 259
Query: 768 EEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKN 827
E F SG+D L+ D++ + +A ++S + R P Y + +L ER +
Sbjct: 260 EYFAYSGRDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIFYLHSRLLERAVRLND 319
Query: 828 ----GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQ 883
G++T++ + A+D++ P+ + D I L + G PAI+ S S+
Sbjct: 320 KLGGGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSR- 378
Query: 884 LDPYIVGEEHYK----VANEVKFYLQKYKELK 911
+ G K VA ++ L +Y+EL+
Sbjct: 379 ----VGGSAQIKAXKQVAGXLRIDLAQYRELE 406
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/338 (60%), Positives = 247/338 (73%), Gaps = 7/338 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GE+ VRTIA T G+ R V+D+G PI PVG TLGRI+NV+G+PID +G I
Sbjct: 99 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 158
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
+K+ + IH P+F IL TGIKV+DLL P+ TV +ME
Sbjct: 159 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 218
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD------KVSLIYGQMNEPSGN 755
LI N+A H G SVF GVGER+REGND YHEM ES V++ KV+L+YGQMNEP G
Sbjct: 219 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 278
Query: 756 RLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814
R RVALTGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +
Sbjct: 279 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 338
Query: 815 MGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
MG +QERI++TK G+ITSVQAIYVPADDLTDP+P+TTF HLD+T VLSR IAELGIYPA+
Sbjct: 339 MGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398
Query: 875 DPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
DPL+S S+ +DP IVG EHY VA V+ LQ YK L+D
Sbjct: 399 DPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQD 436
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 34/344 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +GQK + IPVG E LGRI+N GE ID + K + A
Sbjct: 111 IAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEA 170
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVI 287
P ++ E L+TGIK +D + P KG + + G GKT + ++ I N K
Sbjct: 171 PEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 230
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISP--------YTGCT 339
++ +G++ ++ +++ ++ Q P TG T
Sbjct: 231 SVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYG--QMNEPPGARARVALTGLT 288
Query: 340 IGEYFRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSK 398
+ EYFRD GQD L+ D++ + A ++S LL R P V Y + + +
Sbjct: 289 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGYQPTLATDMGTM 342
Query: 399 INKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYR 458
+++I G++T+ I D+T P + D L +
Sbjct: 343 -------QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 395
Query: 459 PAINVGLSVSRVG-----GAAQYKIVKKLSGDIRIMLAQYRELE 497
PA++ S SR+ G+ Y + + ++ +L Y+ L+
Sbjct: 396 PAVDPLDSTSRIMDPNIVGSEHYDVAR----GVQKILQDYKSLQ 435
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/338 (60%), Positives = 247/338 (73%), Gaps = 7/338 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GE+ VRTIA T G+ R V+D+G PI PVG TLGRI+NV+G+PID +G I
Sbjct: 53 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 112
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
+K+ + IH P+F IL TGIKV+DLL P+ TV +ME
Sbjct: 113 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 172
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD------KVSLIYGQMNEPSGN 755
LI N+A H G SVF GVGER+REGND YHEM ES V++ KV+L+YGQMNEP G
Sbjct: 173 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232
Query: 756 RLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814
R RVALTGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +
Sbjct: 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 292
Query: 815 MGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
MG +QERI++TK G+ITSVQAIYVPADDLTDP+P+TTF HLD+T VLSR IAELGIYPA+
Sbjct: 293 MGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 352
Query: 875 DPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
DPL+S S+ +DP IVG EHY VA V+ LQ YK L+D
Sbjct: 353 DPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQD 390
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 34/344 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +GQK + IPVG E LGRI+N GE ID + K + A
Sbjct: 65 IAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEA 124
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVI 287
P ++ E L+TGIK +D + P KG + + G GKT + ++ I N K
Sbjct: 125 PEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 184
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISP--------YTGCT 339
++ +G++ ++ +++ ++ Q P TG T
Sbjct: 185 SVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYG--QMNEPPGARARVALTGLT 242
Query: 340 IGEYFRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSK 398
+ EYFRD GQD L+ D++ + A ++S LL R P V Y + + +
Sbjct: 243 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGYQPTLATDMGTM 296
Query: 399 INKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYR 458
+++I G++T+ I D+T P + D L +
Sbjct: 297 -------QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 349
Query: 459 PAINVGLSVSRVG-----GAAQYKIVKKLSGDIRIMLAQYRELE 497
PA++ S SR+ G+ Y + + ++ +L Y+ L+
Sbjct: 350 PAVDPLDSTSRIMDPNIVGSEHYDVAR----GVQKILQDYKSLQ 389
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/338 (60%), Positives = 247/338 (73%), Gaps = 7/338 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GE+ VRTIA T G+ R V+D+G PI PVG TLGRI+NV+G+PID +G I
Sbjct: 53 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 112
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
+K+ + IH P+F IL TGIKV+DLL P+ TV +ME
Sbjct: 113 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 172
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD------KVSLIYGQMNEPSGN 755
LI N+A H G SVF GVGER+REGND YHEM ES V++ KV+L+YGQMNEP G
Sbjct: 173 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232
Query: 756 RLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814
R RVALTGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +
Sbjct: 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 292
Query: 815 MGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
MG +QERI++TK G+ITSVQAIYVPADDLTDP+P+TTF HLD+T VLSR IAELGIYPA+
Sbjct: 293 MGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 352
Query: 875 DPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
DPL+S S+ +DP IVG EHY VA V+ LQ YK L+D
Sbjct: 353 DPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQD 390
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 34/344 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +GQK + IPVG E LGRI+N GE ID + K + A
Sbjct: 65 IAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEA 124
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVI 287
P ++ E L+TGIK +D + P KG + + G GKT + ++ I N K
Sbjct: 125 PEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 184
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISP--------YTGCT 339
++ +G++ ++ +++ ++ Q P TG T
Sbjct: 185 SVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYG--QMNEPPGARARVALTGLT 242
Query: 340 IGEYFRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSK 398
+ EYFRD GQD L+ D++ + A ++S LL R P V Y + + +
Sbjct: 243 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGYQPTLATDMGTM 296
Query: 399 INKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYR 458
+++I G++T+ I D+T P + D L +
Sbjct: 297 -------QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 349
Query: 459 PAINVGLSVSRVG-----GAAQYKIVKKLSGDIRIMLAQYRELE 497
PA++ S SR+ G+ Y + + ++ +L Y+ L+
Sbjct: 350 PAVDPLDSTSRIMDPNIVGSEHYDVAR----GVQKILQDYKSLQ 389
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/338 (60%), Positives = 247/338 (73%), Gaps = 7/338 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GE+ VRTIA T G+ R V+D+G PI PVG TLGRI+NV+G+PID +G I
Sbjct: 51 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 110
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
+K+ + IH P+F IL TGIKV+DLL P+ TV +ME
Sbjct: 111 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 170
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD------KVSLIYGQMNEPSGN 755
LI N+A H G SVF GVGER+REGND YHEM ES V++ KV+L+YGQMNEP G
Sbjct: 171 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 230
Query: 756 RLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814
R RVALTGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +
Sbjct: 231 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 290
Query: 815 MGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
MG +QERI++TK G+ITSVQAIYVPADDLTDP+P+TTF HLD+T VLSR IAELGIYPA+
Sbjct: 291 MGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 350
Query: 875 DPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
DPL+S S+ +DP IVG EHY VA V+ LQ YK L+D
Sbjct: 351 DPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQD 388
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 34/344 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +GQK + IPVG E LGRI+N GE ID + K + A
Sbjct: 63 IAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEA 122
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVI 287
P ++ E L+TGIK +D + P KG + + G GKT + ++ I N K
Sbjct: 123 PEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 182
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISP--------YTGCT 339
++ +G++ ++ +++ ++ Q P TG T
Sbjct: 183 SVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYG--QMNEPPGARARVALTGLT 240
Query: 340 IGEYFRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSK 398
+ EYFRD GQD L+ D++ + A ++S LL R P V Y + + +
Sbjct: 241 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGYQPTLATDMGTM 294
Query: 399 INKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYR 458
+++I G++T+ I D+T P + D L +
Sbjct: 295 -------QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 347
Query: 459 PAINVGLSVSRVG-----GAAQYKIVKKLSGDIRIMLAQYRELE 497
PA++ S SR+ G+ Y + + ++ +L Y+ L+
Sbjct: 348 PAVDPLDSTSRIMDPNIVGSEHYDVAR----GVQKILQDYKSLQ 387
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/338 (60%), Positives = 247/338 (73%), Gaps = 7/338 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GE+ VRTIA T G+ R V+D+G PI PVG TLGRI+NV+G+PID +G I
Sbjct: 41 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 100
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
+K+ + IH P+F IL TGIKV+DLL P+ TV +ME
Sbjct: 101 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 160
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD------KVSLIYGQMNEPSGN 755
LI N+A H G SVF GVGER+REGND YHEM ES V++ KV+L+YGQMNEP G
Sbjct: 161 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 220
Query: 756 RLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814
R RVALTGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +
Sbjct: 221 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 280
Query: 815 MGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
MG +QERI++TK G+ITSVQAIYVPADDLTDP+P+TTF HLD+T VLSR IAELGIYPA+
Sbjct: 281 MGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 340
Query: 875 DPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
DPL+S S+ +DP IVG EHY VA V+ LQ YK L+D
Sbjct: 341 DPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQD 378
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 34/344 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +GQK + IPVG E LGRI+N GE ID + K + A
Sbjct: 53 IAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEA 112
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVI 287
P ++ E L+TGIK +D + P KG + + G GKT + ++ I N K
Sbjct: 113 PEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 172
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISP--------YTGCT 339
++ +G++ ++ +++ ++ Q P TG T
Sbjct: 173 SVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYG--QMNEPPGARARVALTGLT 230
Query: 340 IGEYFRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSK 398
+ EYFRD GQD L+ D++ + A ++S LL R P V Y + + +
Sbjct: 231 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGYQPTLATDMGTM 284
Query: 399 INKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYR 458
+++I G++T+ I D+T P + D L +
Sbjct: 285 -------QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 337
Query: 459 PAINVGLSVSRVG-----GAAQYKIVKKLSGDIRIMLAQYRELE 497
PA++ S SR+ G+ Y + + ++ +L Y+ L+
Sbjct: 338 PAVDPLDSTSRIMDPNIVGSEHYDVAR----GVQKILQDYKSLQ 377
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/333 (59%), Positives = 251/333 (75%), Gaps = 2/333 (0%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V +G++ VRTIA +T+G+ R V+DTG PI PVG TLGR+ NVLG+PID +G+I
Sbjct: 50 VALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDI 109
Query: 642 NS-KKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMM 700
+ ++ PIH PKF ILETGIKV+DLL P++ TV +
Sbjct: 110 PADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQ 169
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELI NIA EH G SVF GVGER+REGND YHEMK+S V+ K ++++GQMNEP G R+RVA
Sbjct: 170 ELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229
Query: 761 LTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819
LTGL++AE FR+ G+D LLFIDNI+RFT AG+EVSA+LGR PSA+GYQPTLA EMG+LQ
Sbjct: 230 LTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQ 289
Query: 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
ERI+ST G+ITS+QAIYVPADD TDP+P+TTF+HLD+T L R++AE+GIYPA+DPL S
Sbjct: 290 ERITSTAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVS 349
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+ L P IVGEEHY+VA +V+ L++YKEL+D
Sbjct: 350 TSRALAPEIVGEEHYQVARKVQQTLERYKELQD 382
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 147/364 (40%), Gaps = 27/364 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLI-KNRETVEKIAPGIMDR 234
L +G + T +PVG LGR+ N GE ID + R+ + + AP +
Sbjct: 69 GLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEEL 128
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
+ E L TGIK +D + P KG + + G GKT + + I N + I ++ +
Sbjct: 129 ATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGV 188
Query: 294 GQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRD-LGQDCL 352
G++ ++ +++K + + TG T+ EYFRD GQD L
Sbjct: 189 GERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGL 248
Query: 353 IIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNK 412
+ D++ + A ++S LL R P + + +L ER I +
Sbjct: 249 LFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQER-------------ITST 295
Query: 413 NNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR--- 469
G++T+ I D T P S D L+ L PA++ +S SR
Sbjct: 296 AKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALA 355
Query: 470 --VGGAAQYKIVKKLSGDIRIMLAQYRELESFSKF--SSDLDIVTKTQLYNGEKISLLMK 525
+ G Y++ +K ++ L +Y+EL+ +L K ++ +I +
Sbjct: 356 PEIVGEEHYQVARK----VQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLS 411
Query: 526 QKPH 529
Q H
Sbjct: 412 QNFH 415
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/338 (60%), Positives = 246/338 (72%), Gaps = 7/338 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GE+ VRTIA T G+ R V+D+G PI PVG TLGRI+NV+G+PID +G I
Sbjct: 53 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 112
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
+K+ + IH P+F IL TGIKV+DLL P+ TV +ME
Sbjct: 113 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 172
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD------KVSLIYGQMNEPSGN 755
LI N+A H G SVF GVGER+REGND YHEM ES V++ KV+L+YGQMNEP G
Sbjct: 173 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232
Query: 756 RLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814
R RVALTGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +
Sbjct: 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 292
Query: 815 MGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
MG +QERI++TK G+ITSVQAI VPADDLTDP+P+TTF HLD+T VLSR IAELGIYPA+
Sbjct: 293 MGTMQERITTTKKGSITSVQAIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 352
Query: 875 DPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
DPL+S S+ +DP IVG EHY VA V+ LQ YK L+D
Sbjct: 353 DPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQD 390
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 34/344 (9%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+ +D + L +GQK + IPVG E LGRI+N GE ID + K + A
Sbjct: 65 IAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEA 124
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVI 287
P ++ E L+TGIK +D + P KG + + G GKT + ++ I N K
Sbjct: 125 PEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGY 184
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISP--------YTGCT 339
++ +G++ ++ +++ ++ Q P TG T
Sbjct: 185 SVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYG--QMNEPPGARARVALTGLT 242
Query: 340 IGEYFRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSK 398
+ EYFRD GQD L+ D++ + A ++S LL R P V Y + + +
Sbjct: 243 VAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGR------IPSAVGYQPTLATDMGTM 296
Query: 399 INKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYR 458
+++I G++T+ I D+T P + D L +
Sbjct: 297 -------QERITTTKKGSITSVQAIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGIY 349
Query: 459 PAINVGLSVSRVG-----GAAQYKIVKKLSGDIRIMLAQYRELE 497
PA++ S SR+ G+ Y + + ++ +L Y+ L+
Sbjct: 350 PAVDPLDSTSRIMDPNIVGSEHYDVAR----GVQKILQDYKSLQ 389
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/401 (50%), Positives = 268/401 (66%), Gaps = 17/401 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V+ + K + +G T I ++PVG ELLGR+V++ G ID K K R V A
Sbjct: 117 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKA 176
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN----- 283
PGI+ R SV EP+ TGIK++DS++PIG+GQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 177 PGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGT 236
Query: 284 ---KNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
K + CIYV IGQK S++ ++ +L + M Y QY++PY+GC++
Sbjct: 237 DEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSM 296
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GEYFRD G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+N
Sbjct: 297 GEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 356
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
F G+LTA P+IET GDV+++IPTNVISITDGQIFL+T LF RPA
Sbjct: 357 DAF---------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 407
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ + +K+++G +++ LAQYRE+ +F++F SDLD T+ L G ++
Sbjct: 408 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 467
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
+ L+KQ + +I E + K+ +I FE
Sbjct: 468 TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 508
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 12/331 (3%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FGN IK IV TG + PVG+ LGR+++ LG+ ID KG I SK + +
Sbjct: 114 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 173
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P +I ++TGIK +D L P T ++ I N +
Sbjct: 174 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 233
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G +++ +G++ + +++ + ++ ++ + + +G
Sbjct: 234 DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 293
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
S+ E FR++GK L+ D++ + +A ++S +L R P Y + +L ER +
Sbjct: 294 CSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 353
Query: 824 STKN----GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G++T++ I A D++ P+ + D I L ++ GI PAI+ S
Sbjct: 354 KMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLS 413
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S+ + +VA +K L +Y+E+
Sbjct: 414 VSR-VGSAAQTRAMKQVAGTMKLELAQYREV 443
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/401 (50%), Positives = 268/401 (66%), Gaps = 17/401 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V+ + K + +G T I ++PVG ELLGR+V++ G ID K K R V A
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKA 133
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN----- 283
PGI+ R SV EP+ TGIK++DS++PIG+GQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 134 PGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGT 193
Query: 284 ---KNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
K + CIYV IGQK S++ ++ +L + M Y QY++PY+GC++
Sbjct: 194 DEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSM 253
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GEYFRD G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+N
Sbjct: 254 GEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
F G+LTA P+IET GDV+++IPTNVISITDGQIFL+T LF RPA
Sbjct: 314 DAF---------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 364
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ + +K+++G +++ LAQYRE+ +F++F SDLD T+ L G ++
Sbjct: 365 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 424
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
+ L+KQ + +I E + K+ +I FE
Sbjct: 425 TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 465
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 12/331 (3%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FGN IK IV TG + PVG+ LGR+++ LG+ ID KG I SK + +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 130
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P +I ++TGIK +D L P T ++ I N +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G +++ +G++ + +++ + ++ ++ + + +G
Sbjct: 191 DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 250
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
S+ E FR++GK L+ D++ + +A ++S +L R P Y + +L ER +
Sbjct: 251 CSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 310
Query: 824 STKN----GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G++T++ I A D++ P+ + D I L ++ GI PAI+ S
Sbjct: 311 KMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLS 370
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S+ + +VA +K L +Y+E+
Sbjct: 371 VSR-VGSAAQTRAMKQVAGTMKLELAQYREV 400
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/393 (48%), Positives = 263/393 (66%), Gaps = 9/393 (2%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V++ + +G + T +I E+PVG L+GR+VN G+ +D +E A
Sbjct: 74 VILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGLGPVETTETRPIESRA 133
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288
PG+MDR SV+EPL TGIK+ID+++PIG+GQRELIIGDRQTGKT++AIDTIINQK++N+IC
Sbjct: 134 PGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTIINQKDQNMIC 193
Query: 289 IYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLG 348
IYV IGQK S++ V+ L + DY +++PY G +GEYF +G
Sbjct: 194 IYVAIGQKESTVATVVETLAKHGAPDYTIVVTASASQPAPLLFLAPYAGVAMGEYFMIMG 253
Query: 349 QDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKK 408
+ L++ DDL+K A AYRQ+SLLLRRPPGREA+PGD+FYLHSRLLER++K++
Sbjct: 254 KHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSD------- 306
Query: 409 IFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS 468
K G+LTA P +ET GD++++IPTNVISITDGQIFL ++LF S RPAIN GLSVS
Sbjct: 307 --AKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLSVS 364
Query: 469 RVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKP 528
RVGGAAQ K +KK++G +R+ LA YRELE+F++F SDLD T+ + G + ++KQ
Sbjct: 365 RVGGAAQIKAMKKVAGTLRLDLAAYRELEAFAQFGSDLDKATQANVARGARTVEVLKQDL 424
Query: 529 HENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
H+ + + F IP++ + FE
Sbjct: 425 HQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFE 457
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 6/328 (1%)
Query: 588 ENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
EN V + G GIK V TG+ + PVG+ +GR++N LG P+D G + + +
Sbjct: 68 ENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGLGPVETTETR 127
Query: 648 PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIA 707
PI + P ++ + L+TGIK ID L P T ++ I N
Sbjct: 128 PIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTIINQK 187
Query: 708 IEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIA 767
++ C +++ +G++ + + D ++ ++P+ G+++
Sbjct: 188 DQNMIC-IYVAIGQKESTVATVVETLAKHGAPDYTIVVTASASQPAPLLFLAPYAGVAMG 246
Query: 768 EEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKN 827
E F GK VL+ ID++ + A ++S +L R P Y + +L ER + +
Sbjct: 247 EYFMIMGKHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSD 306
Query: 828 ----GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQ 883
G++T++ + A D++ P+ + D I L + G+ PAI+ S S+
Sbjct: 307 AKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLSVSRV 366
Query: 884 LDPYIVGEEHYKVANEVKFYLQKYKELK 911
+ + KVA ++ L Y+EL+
Sbjct: 367 GGAAQI-KAMKKVAGTLRLDLAAYRELE 393
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/401 (50%), Positives = 268/401 (66%), Gaps = 17/401 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V+ + K + +G T I ++PVG ELLGR+V++ G ID K K R V A
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKA 133
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN----- 283
PGI+ R SV EP+ TGIK++DS++PIG+GQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 134 PGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGT 193
Query: 284 ---KNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
K + CIYV IGQK S++ ++ +L + M Y QY++PY+GC++
Sbjct: 194 DEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSM 253
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GEYFRD G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+N
Sbjct: 254 GEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
F G+LTA P+IET GDV+++IPTNVISITDGQIFL+T LF RPA
Sbjct: 314 DAF---------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 364
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ + +K+++G +++ LAQYRE+ +F++F SDLD T+ L G ++
Sbjct: 365 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 424
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
+ L+KQ + +I E + K+ +I FE
Sbjct: 425 TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 465
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 12/331 (3%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FGN IK IV TG + PVG+ LGR+++ LG+ ID KG I SK + +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 130
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P +I ++TGIK +D L P T ++ I N +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G +++ +G++ + +++ + ++ ++ + + +G
Sbjct: 191 DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 250
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
S+ E FR++GK L+ D++ + +A ++S +L R P Y + +L ER +
Sbjct: 251 CSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 310
Query: 824 STKN----GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G++T++ I A D++ P+ + D I L ++ GI PAI+ S
Sbjct: 311 KMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLS 370
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S+ + +VA +K L +Y+E+
Sbjct: 371 VSR-VGSAAQTRAMKQVAGTMKLELAQYREV 400
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/401 (50%), Positives = 268/401 (66%), Gaps = 17/401 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V+ + K + +G T I ++PVG ELLGR+V++ G ID K K R V A
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKA 133
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN----- 283
PGI+ R SV EP+ TGIK++DS++PIG+GQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 134 PGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGT 193
Query: 284 ---KNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
K + CIYV IGQK S++ ++ +L + M Y QY++PY+GC++
Sbjct: 194 DEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSM 253
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GEYFRD G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+N
Sbjct: 254 GEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
F G+LTA P+IET GDV+++IPTNVISITDGQIFL+T LF RPA
Sbjct: 314 DAF---------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 364
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ + +K+++G +++ LAQYRE+ +F++F SDLD T+ L G ++
Sbjct: 365 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 424
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
+ L+KQ + +I E + K+ +I FE
Sbjct: 425 TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 465
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 12/331 (3%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FGN IK IV TG + PVG+ LGR+++ LG+ ID KG I SK + +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 130
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P +I ++TGIK +D L P T ++ I N +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G +++ +G++ + +++ + ++ ++ + + +G
Sbjct: 191 DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 250
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
S+ E FR++GK L+ D++ + +A ++S +L R P Y + +L ER +
Sbjct: 251 CSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 310
Query: 824 STKN----GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G++T++ I A D++ P+ + D I L ++ GI PAI+ S
Sbjct: 311 KMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLS 370
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S+ + +VA +K L +Y+E+
Sbjct: 371 VSR-VGSAAQTRAMKQVAGTMKLELAQYREV 400
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/401 (50%), Positives = 268/401 (66%), Gaps = 17/401 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V+ + K + +G T I ++PVG ELLGR+V++ G ID K K R V A
Sbjct: 56 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKA 115
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN----- 283
PGI+ R SV EP+ TGIK++DS++PIG+GQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 116 PGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGT 175
Query: 284 ---KNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
K + CIYV IGQK S++ ++ +L + M Y QY++PY+GC++
Sbjct: 176 DEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSM 235
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GEYFRD G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+N
Sbjct: 236 GEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 295
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
F G+LTA P+IET GDV+++IPTNVISITDGQIFL+T LF RPA
Sbjct: 296 DAF---------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 346
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ + +K+++G +++ LAQYRE+ +F++F SDLD T+ L G ++
Sbjct: 347 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 406
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
+ L+KQ + +I E + K+ +I FE
Sbjct: 407 TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 447
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 12/331 (3%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FGN IK IV TG + PVG+ LGR+++ LG+ ID KG I SK + +
Sbjct: 53 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 112
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P +I ++TGIK +D L P T ++ I N +
Sbjct: 113 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 172
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G +++ +G++ + +++ + ++ ++ + + +G
Sbjct: 173 DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 232
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
S+ E FR++GK L+ D++ + +A ++S +L R P Y + +L ER +
Sbjct: 233 CSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 292
Query: 824 STKN----GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G++T++ I A D++ P+ + D I L ++ GI PAI+ S
Sbjct: 293 KMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLS 352
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S+ + +VA +K L +Y+E+
Sbjct: 353 VSR-VGSAAQTRAMKQVAGTMKLELAQYREV 382
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/401 (50%), Positives = 268/401 (66%), Gaps = 17/401 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V+ + K + +G T I ++PVG ELLGR+V++ G ID K K R V A
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKA 133
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN----- 283
PGI+ R SV EP+ TGIK++DS++PIG+GQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 134 PGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGT 193
Query: 284 ---KNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
K + CIYV IGQK S++ ++ +L + M Y QY++PY+GC++
Sbjct: 194 DEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSM 253
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GEYFRD G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+N
Sbjct: 254 GEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
F G+LTA P+IET GDV+++IPTNVISITDGQIFL+T LF RPA
Sbjct: 314 DSF---------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 364
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ + +K+++G +++ LAQYRE+ +F++F SDLD T+ L G ++
Sbjct: 365 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 424
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
+ L+KQ + +I E + K+ +I FE
Sbjct: 425 TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 465
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 146/331 (44%), Gaps = 12/331 (3%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FGN IK IV TG + PVGD LGR+++ LG+ ID KG + SK + +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVG 130
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P +I ++TGIK +D L P T ++ I N +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G +++ +G++ + +++ + ++ ++ + + +G
Sbjct: 191 DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 250
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
S+ E FR++GK L+ D++ + +A ++S +L R P Y + +L ER +
Sbjct: 251 CSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 310
Query: 824 ----STKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
S G++T++ I A D++ P+ + D I L ++ GI PAI+ S
Sbjct: 311 KMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLS 370
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S+ + +VA +K L +Y+E+
Sbjct: 371 VSR-VGSAAQTRAMKQVAGTMKLELAQYREV 400
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/401 (47%), Positives = 264/401 (65%), Gaps = 9/401 (2%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
VL+ D + +G T +I +IPV LGR++N+ + ID + + +E A
Sbjct: 75 VLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPA 134
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288
PGIM R SV EPL TG+ +ID+MIP+G+GQRELIIGDRQTGKT +A DTI+NQ+ +NVIC
Sbjct: 135 PGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVIC 194
Query: 289 IYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLG 348
+YV IGQK SS+ V+ + M+Y QY++PYTG + EYF
Sbjct: 195 VYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRE 254
Query: 349 QDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKK 408
+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++ E
Sbjct: 255 RHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGE--- 311
Query: 409 IFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS 468
G++TA PI+ET GDV+++IPTNVISITDGQIFL +LFN+ RPAINVG+SVS
Sbjct: 312 ------GSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVS 365
Query: 469 RVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKP 528
RVG AAQ K +KK++G +++ LAQ+ ELE+F++F+SDLD T+ QL G+++ L+KQ
Sbjct: 366 RVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQ 425
Query: 529 HENYSIVEXXXXXXXXKNRFFFKIPIKQIELFEINIIKYFR 569
++ E N + + + Q+ + + + Y +
Sbjct: 426 SAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVK 466
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 142/327 (43%), Gaps = 6/327 (1%)
Query: 589 NIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSP 648
N V + G+ I+ + V TG+ PV + LGR++N L PID +GEI + +
Sbjct: 70 NNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRL 129
Query: 649 IHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAI 708
I + P ++ L+TG+ ID + P T + I N
Sbjct: 130 IESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG 189
Query: 709 EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAE 768
++ C V++ +G+++ +E ++ ++ + P+ + TG ++AE
Sbjct: 190 QNVIC-VYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAE 248
Query: 769 EFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKN- 827
F + L+ D++ + A ++S +L R P Y + +L ER + +
Sbjct: 249 YFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSL 308
Query: 828 ---GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQL 884
G++T++ + A D++ P+ + D I LS + GI PAI+ S S+
Sbjct: 309 LGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVG 368
Query: 885 DPYIVGEEHYKVANEVKFYLQKYKELK 911
+ + KVA ++K L ++ EL+
Sbjct: 369 SAAQI-KAMKKVAGKLKLELAQFAELE 394
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/401 (50%), Positives = 268/401 (66%), Gaps = 17/401 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V+ + K + +G T I ++PVG ELLGR+V++ G ID K K R V A
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKA 133
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN----- 283
PGI+ R SV EP+ TGIK++DS++PIG+GQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 134 PGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGT 193
Query: 284 ---KNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
K + CIYV IGQK S++ ++ +L + M Y QY++PY+GC++
Sbjct: 194 DEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSM 253
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GEYFRD G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+N
Sbjct: 254 GEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 313
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
F G+LTA P+IET GDV+++IPTNVISITDGQIFL+T LF RPA
Sbjct: 314 DSF---------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 364
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ + +K+++G +++ LAQYRE+ +F++F SDLD T+ L G ++
Sbjct: 365 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 424
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
+ L+KQ + +I E + K+ +I FE
Sbjct: 425 TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 465
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 146/331 (44%), Gaps = 12/331 (3%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FGN IK IV TG + PVGD LGR+++ LG+ ID KG + SK + +
Sbjct: 71 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVG 130
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P +I ++TGIK +D L P T ++ I N +
Sbjct: 131 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 190
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G +++ +G++ + +++ + ++ ++ + + +G
Sbjct: 191 DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 250
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
S+ E FR++GK L+ D++ + +A ++S +L R P Y + +L ER +
Sbjct: 251 CSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 310
Query: 824 ----STKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
S G++T++ I A D++ P+ + D I L ++ GI PAI+ S
Sbjct: 311 KMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLS 370
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S+ + +VA +K L +Y+E+
Sbjct: 371 VSR-VGSAAQTRAMKQVAGTMKLELAQYREV 400
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/409 (46%), Positives = 271/409 (66%), Gaps = 17/409 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
VL + + +G+ T I ++PVG LLGR+V++ G ID K R + A
Sbjct: 111 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKA 170
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK------ 282
PGI+ R SV+EP+ TG+K++D+++PIG+GQRELIIGDRQTGKT +A+DTI+NQK
Sbjct: 171 PGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGS 230
Query: 283 --NKNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
+K + C+YV +GQK S++ ++ L+ ++ M Y QY++P+T +I
Sbjct: 231 DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASI 290
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GE+FRD G+ LI+YDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++
Sbjct: 291 GEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 350
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
+ + +G+LTA P+IET GDV+++IPTNVISITDGQIFL+ LF RPA
Sbjct: 351 E---------KEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPA 401
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ K +K+++G +++ LAQYRE+ +F++F SDLD TK L GE++
Sbjct: 402 INVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERL 461
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFEINIIKYFR 569
+ L+KQ + + E N I + +I FE + + Y +
Sbjct: 462 TQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLK 510
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 146/334 (43%), Gaps = 18/334 (5%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FG+ +K +V TG + PVG LGR+++ LG+PID KG I++ +S
Sbjct: 108 VGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQ 167
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P + + ++TG+K +D L P T ++ I N +
Sbjct: 168 VKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWN 227
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G V++ VG++ +++ + + ++ +E + + T
Sbjct: 228 NGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 287
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY-------QPTLAEEMG 816
SI E FR++GK L+ D++ + +A ++S +L R P Y L E
Sbjct: 288 ASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAA 347
Query: 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDP 876
KL E+ S G++T++ I D++ P+ + D I L ++ GI PAI+
Sbjct: 348 KLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINV 404
Query: 877 LESYSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S S+ V + +VA +K +L +Y+E+
Sbjct: 405 GLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV 437
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/409 (46%), Positives = 271/409 (66%), Gaps = 17/409 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
VL + + +G+ T I ++PVG LLGR+V++ G ID K R + A
Sbjct: 76 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKA 135
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK------ 282
PGI+ R SV+EP+ TG+K++D+++PIG+GQRELIIGDRQTGKT +A+DTI+NQK
Sbjct: 136 PGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGS 195
Query: 283 --NKNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
+K + C+YV +GQK S++ ++ L+ ++ M Y QY++P+T +I
Sbjct: 196 DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASI 255
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GE+FRD G+ LI+YDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++
Sbjct: 256 GEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 315
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
+ + +G+LTA P+IET GDV+++IPTNVISITDGQIFL+ LF RPA
Sbjct: 316 E---------KEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPA 366
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ K +K+++G +++ LAQYRE+ +F++F SDLD TK L GE++
Sbjct: 367 INVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERL 426
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFEINIIKYFR 569
+ L+KQ + + E N I + +I FE + + Y +
Sbjct: 427 TQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLK 475
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 146/334 (43%), Gaps = 18/334 (5%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FG+ +K +V TG + PVG LGR+++ LG+PID KG I++ +S
Sbjct: 73 VGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQ 132
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P + + ++TG+K +D L P T ++ I N +
Sbjct: 133 VKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWN 192
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G V++ VG++ +++ + + ++ +E + + T
Sbjct: 193 NGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 252
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY-------QPTLAEEMG 816
SI E FR++GK L+ D++ + +A ++S +L R P Y L E
Sbjct: 253 ASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAA 312
Query: 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDP 876
KL E+ S G++T++ I D++ P+ + D I L ++ GI PAI+
Sbjct: 313 KLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINV 369
Query: 877 LESYSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S S+ V + +VA +K +L +Y+E+
Sbjct: 370 GLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV 402
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/409 (46%), Positives = 271/409 (66%), Gaps = 17/409 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
VL + + +G+ T I ++PVG LLGR+V++ G ID K R + A
Sbjct: 76 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKA 135
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK------ 282
PGI+ R SV+EP+ TG+K++D+++PIG+GQRELIIGDRQTGKT +A+DTI+NQK
Sbjct: 136 PGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGS 195
Query: 283 --NKNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
+K + C+YV +GQK S++ ++ L+ ++ M Y QY++P+T +I
Sbjct: 196 DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASI 255
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GE+FRD G+ LI+YDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++
Sbjct: 256 GEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 315
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
+ + +G+LTA P+IET GDV+++IPTNVISITDGQIFL+ LF RPA
Sbjct: 316 E---------KEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPA 366
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ K +K+++G +++ LAQYRE+ +F++F SDLD TK L GE++
Sbjct: 367 INVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERL 426
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFEINIIKYFR 569
+ L+KQ + + E N I + +I FE + + Y +
Sbjct: 427 TQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLK 475
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 146/334 (43%), Gaps = 18/334 (5%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FG+ +K +V TG + PVG LGR+++ LG+PID KG I++ +S
Sbjct: 73 VGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQ 132
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P + + ++TG+K +D L P T ++ I N +
Sbjct: 133 VKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWN 192
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G V++ VG++ +++ + + ++ +E + + T
Sbjct: 193 NGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 252
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY-------QPTLAEEMG 816
SI E FR++GK L+ D++ + +A ++S +L R P Y L E
Sbjct: 253 ASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAA 312
Query: 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDP 876
KL E+ S G++T++ I D++ P+ + D I L ++ GI PAI+
Sbjct: 313 KLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINV 369
Query: 877 LESYSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S S+ V + +VA +K +L +Y+E+
Sbjct: 370 GLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV 402
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/409 (46%), Positives = 271/409 (66%), Gaps = 17/409 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
VL + + +G+ T I ++PVG LLGR+V++ G ID K R + A
Sbjct: 52 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKA 111
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK------ 282
PGI+ R SV+EP+ TG+K++D+++PIG+GQRELIIGDRQTGKT +A+DTI+NQK
Sbjct: 112 PGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGS 171
Query: 283 --NKNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
+K + C+YV +GQK S++ ++ L+ ++ M Y QY++P+T +I
Sbjct: 172 DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASI 231
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GE+FRD G+ LI+YDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++
Sbjct: 232 GEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 291
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
+ + +G+LTA P+IET GDV+++IPTNVISITDGQIFL+ LF RPA
Sbjct: 292 E---------KEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPA 342
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ K +K+++G +++ LAQYRE+ +F++F SDLD TK L GE++
Sbjct: 343 INVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERL 402
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFEINIIKYFR 569
+ L+KQ + + E N I + +I FE + + Y +
Sbjct: 403 TQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLK 451
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 146/334 (43%), Gaps = 18/334 (5%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FG+ +K +V TG + PVG LGR+++ LG+PID KG I++ +S
Sbjct: 49 VGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQ 108
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P + + ++TG+K +D L P T ++ I N +
Sbjct: 109 VKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWN 168
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G V++ VG++ +++ + + ++ +E + + T
Sbjct: 169 NGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 228
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY-------QPTLAEEMG 816
SI E FR++GK L+ D++ + +A ++S +L R P Y L E
Sbjct: 229 ASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAA 288
Query: 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDP 876
KL E+ S G++T++ I D++ P+ + D I L ++ GI PAI+
Sbjct: 289 KLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINV 345
Query: 877 LESYSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S S+ V + +VA +K +L +Y+E+
Sbjct: 346 GLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV 378
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/409 (46%), Positives = 271/409 (66%), Gaps = 17/409 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
VL + + +G+ T I ++PVG LLGR+V++ G ID K R + A
Sbjct: 51 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKA 110
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK------ 282
PGI+ R SV+EP+ TG+K++D+++PIG+GQRELIIGDRQTGKT +A+DTI+NQK
Sbjct: 111 PGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGS 170
Query: 283 --NKNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
+K + C+YV +GQK S++ ++ L+ ++ M Y QY++P+T +I
Sbjct: 171 DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASI 230
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GE+FRD G+ LI+YDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++
Sbjct: 231 GEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 290
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
+ + +G+LTA P+IET GDV+++IPTNVISITDGQIFL+ LF RPA
Sbjct: 291 E---------KEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPA 341
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ K +K+++G +++ LAQYRE+ +F++F SDLD TK L GE++
Sbjct: 342 INVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERL 401
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFEINIIKYFR 569
+ L+KQ + + E N I + +I FE + + Y +
Sbjct: 402 TQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLK 450
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 146/334 (43%), Gaps = 18/334 (5%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FG+ +K +V TG + PVG LGR+++ LG+PID KG I++ +S
Sbjct: 48 VGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQ 107
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P + + ++TG+K +D L P T ++ I N +
Sbjct: 108 VKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWN 167
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G V++ VG++ +++ + + ++ +E + + T
Sbjct: 168 NGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 227
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY-------QPTLAEEMG 816
SI E FR++GK L+ D++ + +A ++S +L R P Y L E
Sbjct: 228 ASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAA 287
Query: 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDP 876
KL E+ S G++T++ I D++ P+ + D I L ++ GI PAI+
Sbjct: 288 KLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINV 344
Query: 877 LESYSKQLDPYIVGEEHYKVANEVKFYLQKYKEL 910
S S+ V + +VA +K +L +Y+E+
Sbjct: 345 GLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREV 377
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/409 (46%), Positives = 270/409 (66%), Gaps = 17/409 (4%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
VL + + +G+ T I ++PVG LLGR+V++ G ID K R + A
Sbjct: 76 VLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKA 135
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK------ 282
PGI+ R SV+EP+ TG+K++D+++PIG+GQRELIIGDRQTGKT +A+DTI+NQK
Sbjct: 136 PGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGS 195
Query: 283 --NKNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
+K + C+YV +GQK S++ ++ L+ ++ M Y QY++P+T +I
Sbjct: 196 DESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASI 255
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GE+FRD G+ LI+YDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++
Sbjct: 256 GEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLS 315
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
+ + +G+LTA P+IET GDV+++IPTNVISITDGQIFL+ LF RPA
Sbjct: 316 E---------KEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPA 366
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ K +K+++G +++ LAQYRE+ + ++F SDLD TK L GE++
Sbjct: 367 INVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAASAQFGSDLDASTKQTLVRGERL 426
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFEINIIKYFR 569
+ L+KQ + + E N I + +I FE + + Y +
Sbjct: 427 TQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLK 475
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 148/338 (43%), Gaps = 18/338 (5%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FG+ +K +V TG + PVG LGR+++ LG+PID KG I++ +S
Sbjct: 73 VGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQ 132
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P + + ++TG+K +D L P T ++ I N +
Sbjct: 133 VKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWN 192
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G V++ VG++ +++ + + ++ +E + + T
Sbjct: 193 NGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTA 252
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY-------QPTLAEEMG 816
SI E FR++GK L+ D++ + +A ++S +L R P Y L E
Sbjct: 253 ASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAA 312
Query: 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDP 876
KL E+ S G++T++ I D++ P+ + D I L ++ GI PAI+
Sbjct: 313 KLSEKEGS---GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINV 369
Query: 877 LESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKDTS 914
S S+ V + +VA +K +L +Y+E+ ++
Sbjct: 370 GLSVSRVGSAAQV-KALKQVAGSLKLFLAQYREVAASA 406
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/401 (49%), Positives = 261/401 (65%), Gaps = 25/401 (6%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
V+ + K + +G T I ++PVG ELLGR+V++ G ID K K R V A
Sbjct: 51 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKA 110
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN----- 283
PGI+ R SV EP+ TGIK++DS++PIG+GQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 111 PGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGT 170
Query: 284 ---KNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTI 340
K + CIYV IGQK S++ ++ +L + M Y QY++PY+GC++
Sbjct: 171 DEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSM 230
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
GEYFRD G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+N
Sbjct: 231 GEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMN 290
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPA 460
F G+LTA P+IET GDV+++IPTNVISITDGQIFL+T LF RPA
Sbjct: 291 DAF---------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 341
Query: 461 INVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKI 520
INVGLSVSRVG AAQ + +K+++G +++ LAQYRE+ LD T+ L G ++
Sbjct: 342 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVA--------LDAATQQLLSRGVRL 393
Query: 521 SLLMKQKPHENYSIVEXXXXXXXXKNRFFFKIPIKQIELFE 561
+ L+KQ + +I E + K+ +I FE
Sbjct: 394 TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 434
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 149/337 (44%), Gaps = 13/337 (3%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V + FGN IK IV TG + PVG+ LGR+++ LG+ ID KG I SK + +
Sbjct: 48 VGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVG 107
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEH 710
P +I ++TGIK +D L P T ++ I N +
Sbjct: 108 LKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFN 167
Query: 711 KGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
G +++ +G++ + +++ + ++ ++ + + +G
Sbjct: 168 DGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 227
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
S+ E FR++GK L+ D++ + +A ++S +L R P Y + +L ER +
Sbjct: 228 CSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 287
Query: 824 STKN----GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G++T++ I A D++ P+ + D I L ++ GI PAI+ S
Sbjct: 288 KMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLS 347
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKELK-DTST 915
S+ + +VA +K L +Y+E+ D +T
Sbjct: 348 VSR-VGSAAQTRAMKQVAGTMKLELAQYREVALDAAT 383
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/339 (58%), Positives = 245/339 (72%), Gaps = 8/339 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
VQQ +G N VR +A T+G+ R V+DTG P+ PVG TLGRI NVLG+P+DN +
Sbjct: 65 VQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPV 124
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMME 701
+++ SPIH P F+ +I ETGIKV++LL P+ TV +ME
Sbjct: 125 DTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIME 184
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD-------KVSLIYGQMNEPSG 754
LI NIA H G SVF GVGER+REGND Y EMKES V++ KV+L+YGQMNEP G
Sbjct: 185 LINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244
Query: 755 NRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAE 813
R+RV LT L++AE FR+ + +DVLLFIDNI+RF AG+EVSA+LGR PSAVGYQPTL+
Sbjct: 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLST 304
Query: 814 EMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPA 873
EMG LQERI+STK G+ITS+QA+YVPADDLTDP+P+TTF HLD+T VLSR +A GIYPA
Sbjct: 305 EMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPA 364
Query: 874 IDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+DPL+S S L P IVGEEHY++A VK LQ+YKEL+D
Sbjct: 365 VDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQD 403
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 141/344 (40%), Gaps = 31/344 (9%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
AV + LT+G + T +PVG LGRI N GE +DN + + + +
Sbjct: 76 AVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRS 135
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNV 286
AP ++ TGIK ++ + P +G + + G GKT + ++ I N K
Sbjct: 136 APAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGG 195
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXEQYISP-------YTGCT 339
+ ++ +G++ ++ ++K ++ + P T T
Sbjct: 196 VSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALT 255
Query: 340 IGEYFRDLG-QDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSK 398
+ EYFRD+ QD L+ D++ + A ++S LL R P V Y + E S
Sbjct: 256 MAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGR------MPSAVGYQPTLSTEMGSL 309
Query: 399 INKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYR 458
+++I + G++T+ + D+T P + D L L
Sbjct: 310 -------QERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIY 362
Query: 459 PAINVGLSVS-----RVGGAAQYKIVKKLSGDIRIMLAQYRELE 497
PA++ S S R+ G Y+I ++ ++ L +Y+EL+
Sbjct: 363 PAVDPLDSTSTMLQPRIVGEEHYEIAQR----VKETLQRYKELQ 402
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
Length = 651
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 83/117 (70%)
Query: 54 GPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLN 113
GPRYCPSIEDK+ +F + HQIFLEPEG S E+Y NG+STSL + Q ++++ + G+
Sbjct: 295 GPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGME 354
Query: 114 YSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVL 170
+ I+R Y IEYD+FDPR L TL KF +GQINGTTGYEEAAAQG +A L
Sbjct: 355 NAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGL 411
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 83/117 (70%)
Query: 54 GPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLN 113
GPRYCPSIEDK+ +F + HQIFLEPEG S E+Y NG+STSL + Q ++++ + G+
Sbjct: 293 GPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGME 352
Query: 114 YSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVL 170
+ I+R Y IEYD+FDPR L TL KF +GQINGTTGYEEAAAQG +A L
Sbjct: 353 NAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGL 409
>pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
Length = 576
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 83/117 (70%)
Query: 54 GPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLN 113
GPRYCPSIEDK+ +F + HQIFLEPEG S E+Y NG+STSL + Q ++++ + G+
Sbjct: 299 GPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGME 358
Query: 114 YSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVL 170
+ I+R Y IEYD+FDPR L TL KF +GQINGTTGYEEAAAQG +A L
Sbjct: 359 NAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGL 415
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 79/115 (68%)
Query: 54 GPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLN 113
GPRYCPSIEDKI +FP+ +H IFLEPEG + E+Y+NG STSL + Q ++ I GL
Sbjct: 289 GPRYCPSIEDKISRFPDKSSHHIFLEPEGTDTVEMYVNGFSTSLPEDIQIAGLRSIPGLE 348
Query: 114 YSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA 168
+ +IR Y IEYD+F P + T+ + N +GQINGT+GYEEAAAQG +A
Sbjct: 349 EAKMIRPGYAIEYDFFHPWQIRSTMETRPVENLFFAGQINGTSGYEEAAAQGLMA 403
>pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
Length = 637
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 75/115 (65%)
Query: 54 GPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLN 113
GPRYCPSIEDKI KFP+ + HQIFLEPEG + E+Y NGLSTSL E Q ++ + I GL
Sbjct: 300 GPRYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLE 359
Query: 114 YSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA 168
+IR AY IEYD P L TL K +G NGTTGYEEAA QG VA
Sbjct: 360 NVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVA 414
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 8/298 (2%)
Query: 618 PVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLC 677
P+G LGR+L+ G P+D ++ + + T P + ++L+TG++ I+ L
Sbjct: 93 PLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALL 152
Query: 678 PFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIG-VGERSREGNDFYHEMKES 736
+V L+ +A + + +G +GER RE DF +
Sbjct: 153 TVGRGQRMGLFAGSGVGKSV----LLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
+ + +I + R++ A IAE+FR+ G+ VLL +D++ R+ +A E++
Sbjct: 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIAL 268
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTH 854
+G P+ GY P++ ++ L ER + G+IT+ + DD DP +
Sbjct: 269 AIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAI 328
Query: 855 LDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
LD IVLSR++AE G YPAID S S+ + I E+HY K L ++ +D
Sbjct: 329 LDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIT-EQHYARVRLFKQLLSSFQRNRD 385
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 126/282 (44%), Gaps = 17/282 (6%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGI--MDRESVNEPLLTGIKSI 248
++P+G LLGR+++ G+ +D ET I P + R + L TG+++I
Sbjct: 91 QLPLGPALLGRVLDGGGKPLDGLPA--PDTLETGALITPPFNPLQRTPIEHVLDTGVRAI 148
Query: 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLK 308
++++ +G+GQR + GK+ + + + +VI + + IG++ + + I +
Sbjct: 149 NALLTVGRGQRMGLFAGSGVGKSVL-LGMMARYTRADVIVVGL-IGERGREVKDFIENIL 206
Query: 309 YYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368
+ + I E FRD GQ L+I D LT++A A R+I
Sbjct: 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREI 266
Query: 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEG 428
+L + PP + +P VF L+ER+ G++TAF + T
Sbjct: 267 ALAIGEPPATKGYPPSVFAKLPALVERAGN-----------GIHGGGSITAFYTVLTEGD 315
Query: 429 DVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
D I + +I DG I L L + + PAI++ S+SR
Sbjct: 316 DQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRA 357
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 142/293 (48%), Gaps = 10/293 (3%)
Query: 619 VGDCTLGRILNVLGDPIDNK--GEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVID-L 675
VGD LGR+++ +G P+++ ++S P Q+ + + G++ ID L
Sbjct: 7 VGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFI-LGVRAIDGL 65
Query: 676 LCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE 735
L + T ++ +I N A V +GER RE N+F + +
Sbjct: 66 LTCGIGQRIGIFAGSGVGKST--LLGMICNGA--SADIIVLALIGERGREVNEFLALLPQ 121
Query: 736 SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVS 795
S L K L+ + P+ R++ A T +IAE FR+ GK+VLL +D++ R+ A +V
Sbjct: 122 ST-LSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVG 180
Query: 796 AMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHL 855
G G+ P++ + KL ER G+IT++ + + +D++ DP + L
Sbjct: 181 LASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSIL 240
Query: 856 DSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYK 908
D IVL+R++AE +PAID S S+ + +V EH + A E K + YK
Sbjct: 241 DGHIVLTRELAEENHFPAIDIGLSASRVMH-NVVTSEHLRAAAECKKLIATYK 292
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 23/284 (8%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNK--KKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSI 248
+I VG LLGR+++ G +++ +L R + P + R+ +++P + G+++I
Sbjct: 4 KIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAE-PPDPLLRQVIDQPFILGVRAI 62
Query: 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVC--IGQKISSLINVINK 306
D ++ G GQR I GK+T+ + I N + ++I + + G++++ + ++ +
Sbjct: 63 DGLLTCGIGQRIGIFAGSGVGKSTL-LGMICNGASADIIVLALIGERGREVNEFLALLPQ 121
Query: 307 LKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
C+ E+ + +T TI EYFRD G++ L++ D +T++A A R
Sbjct: 122 STLSKCV----LVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAAR 177
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+ L P R FP VF +LLER+ K G++TA +
Sbjct: 178 DVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPK-------------GSITAIYTVLLE 224
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
+V I V SI DG I L L N+ PAI++GLS SRV
Sbjct: 225 SDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRV 268
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 148/341 (43%), Gaps = 26/341 (7%)
Query: 589 NIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKG--------E 640
+IV F T G+ ++ V+ TG+ + P LGRIL+ G+P D +
Sbjct: 50 DIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLD 109
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMM 700
IN +P LPPK + ++TGI ID + T +
Sbjct: 110 INGAAMNPYARLPPK--------DFIQTGISTIDGTNTLVRGQKLPIFSASGLPHTEIAL 161
Query: 701 ELIRNIAI---EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL 757
++ R ++ E VF +G + E F + +++ L++ + ++P+ R+
Sbjct: 162 QIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 221
Query: 758 RVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816
L+ AE G VL+ + +I + A ++ A P GY + ++
Sbjct: 222 VTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLA 281
Query: 817 KLQERISSTKN--GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
L ER K G++T + + +P DD+T P P + + IV++R++ GIYP I
Sbjct: 282 TLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPI 341
Query: 875 DPLESYSKQLDPYIVG----EEHYKVANEVKFYLQKYKELK 911
+ L S S+ ++ I E+H V++++ + ++L+
Sbjct: 342 NVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLR 382
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 148/380 (38%), Gaps = 27/380 (7%)
Query: 130 DPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKI 189
+P N+ +NIK + TV GQ+ +++A V + + L + T +
Sbjct: 22 EPVGYNEIVNIKMGDGTVRRGQV------LDSSADIVVVQVFEGTGGLDKDCGVIFTGET 75
Query: 190 FEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSID 249
++P +LLGRI++ GE D + + + A R + + TGI +ID
Sbjct: 76 LKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTID 135
Query: 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTI----INQKNKNVICIYVCIGQKISSLINVIN 305
+ +GQ+ I T IA+ + ++ +G ++
Sbjct: 136 GTNTLVRGQKLPIFSASGLPHTEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMS 195
Query: 306 KLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHAWA 364
+ ++ E+ ++P T EY + G L+I D+T +A A
Sbjct: 196 DFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEA 255
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
RQ+ PGR +PG ++ + L ER+ I G++T PI+
Sbjct: 256 LRQMGAARNEVPGRRGYPGYMYTDLATLYERAG-----------IVKGAKGSVTQIPILS 304
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T IP IT+GQI + L P INV S+SR +G +
Sbjct: 305 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDH 364
Query: 480 KKLSGDIRIMLAQYRELESF 499
K +S + A+ R+L
Sbjct: 365 KAVSDQMYAGYAEGRDLRGL 384
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 136/305 (44%), Gaps = 24/305 (7%)
Query: 240 PLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISS 299
P++TG + ID+ P+ KG + G GKT + I + + + +YV G++ +
Sbjct: 215 PMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQ--IAKWSDVDLVVYVGCGERGNE 272
Query: 300 LINVINKLKYY-------NCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCL 352
+ +V+N+ + M+ + S YTG TI EYFRD+G D
Sbjct: 273 MTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVA 332
Query: 353 IIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIF-- 410
I+ D ++ A A R++S L PG E +P YL SRL E Y+ ++
Sbjct: 333 IMADSTSRWAEALREMSGRLEEMPGDEGYPA---YLGSRLAE-------YYERSGRVIAL 382
Query: 411 --NKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS 468
++ G++TA + GD++ + N + + LD++L + P+IN S S
Sbjct: 383 GSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYS 442
Query: 469 RVGGAAQYKIVKKLSGDIRIMLAQ-YRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQK 527
+ + L D M+ + R L+ + + + +V L + ++++L + +
Sbjct: 443 LYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKS 502
Query: 528 PHENY 532
E+Y
Sbjct: 503 IREDY 507
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 32/263 (12%)
Query: 640 EINSKKKSPIHTLPPKFSNQIFNNNI-LETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVN 698
E+ +K P+ P Q N ++ + TG +VID P TV
Sbjct: 191 ELTMMQKWPVRRGRP--IKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVV 248
Query: 699 MMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE-------SNVLDKVSLIYGQMNE 751
++ + ++ V++G GER E D +E E +++++ LI N
Sbjct: 249 QHQIAKWSDVD---LVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNM 305
Query: 752 PSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTL 811
P R TG++IAE FR+ G DV + D+ R+ A E+S L P GY L
Sbjct: 306 PVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYL 365
Query: 812 AEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTDPSPSTT------FTHLDST 858
+ + ER S + G+IT++ A+ D+++P T F LDS+
Sbjct: 366 GSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSS 425
Query: 859 IVLSRQIAELGIYPAIDPLESYS 881
+ R +P+I+ ++SYS
Sbjct: 426 LAQKRH------FPSINWIQSYS 442
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 147/341 (43%), Gaps = 26/341 (7%)
Query: 589 NIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKG--------E 640
+IV F T G+ ++ V+ TG+ + P LGRIL+ G+P D +
Sbjct: 50 DIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLD 109
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMM 700
IN +P LPPK + ++TGI ID + +
Sbjct: 110 INGAAMNPYARLPPK--------DFIQTGISTIDGTNTLVRGQKLPIFSASGLPHAEIAL 161
Query: 701 ELIRNIAI---EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL 757
++ R ++ E VF +G + E F + +++ L++ + ++P+ R+
Sbjct: 162 QIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 221
Query: 758 RVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816
L+ AE G VL+ + +I + A ++ A P GY + ++
Sbjct: 222 VTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLA 281
Query: 817 KLQERISSTKN--GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
L ER K G++T + + +P DD+T P P + + IV++R++ GIYP I
Sbjct: 282 TLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPI 341
Query: 875 DPLESYSKQLDPYIVG----EEHYKVANEVKFYLQKYKELK 911
+ L S S+ ++ I E+H V++++ + ++L+
Sbjct: 342 NVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLR 382
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 147/380 (38%), Gaps = 27/380 (7%)
Query: 130 DPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKI 189
+P N+ +NIK + TV GQ+ +++A V + + L + T +
Sbjct: 22 EPVGYNEIVNIKMGDGTVRRGQV------LDSSADIVVVQVFEGTGGLDKDCGVIFTGET 75
Query: 190 FEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSID 249
++P +LLGRI++ GE D + + + A R + + TGI +ID
Sbjct: 76 LKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTID 135
Query: 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTI----INQKNKNVICIYVCIGQKISSLINVIN 305
+ +GQ+ I IA+ + ++ +G ++
Sbjct: 136 GTNTLVRGQKLPIFSASGLPHAEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMS 195
Query: 306 KLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHAWA 364
+ ++ E+ ++P T EY + G L+I D+T +A A
Sbjct: 196 DFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEA 255
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
RQ+ PGR +PG ++ + L ER+ I G++T PI+
Sbjct: 256 LRQMGAARNEVPGRRGYPGYMYTDLATLYERAG-----------IVKGAKGSVTQIPILS 304
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T IP IT+GQI + L P INV S+SR +G +
Sbjct: 305 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDH 364
Query: 480 KKLSGDIRIMLAQYRELESF 499
K +S + A+ R+L
Sbjct: 365 KAVSDQMYAGYAEGRDLRGL 384
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 147/341 (43%), Gaps = 26/341 (7%)
Query: 589 NIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKG--------E 640
+IV F T G+ ++ V+ TG+ + P LGRIL+ G+P D +
Sbjct: 50 DIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLD 109
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMM 700
IN +P LPPK + ++TGI ID + +
Sbjct: 110 INGAAMNPYARLPPK--------DFIQTGISTIDGTNTLVRGQKLPIFSASGLPANEIAL 161
Query: 701 ELIRNIAI---EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL 757
++ R ++ E VF +G + E F + +++ L++ + ++P+ R+
Sbjct: 162 QIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 221
Query: 758 RVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816
L+ AE G VL+ + +I + A ++ A P GY + ++
Sbjct: 222 VTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLA 281
Query: 817 KLQERISSTKN--GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
L ER K G++T + + +P DD+T P P + + IV++R++ GIYP I
Sbjct: 282 TLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPI 341
Query: 875 DPLESYSKQLDPYIVG----EEHYKVANEVKFYLQKYKELK 911
+ L S S+ ++ I E+H V++++ + ++L+
Sbjct: 342 NVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLR 382
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 147/380 (38%), Gaps = 27/380 (7%)
Query: 130 DPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKI 189
+P N+ +NIK + TV GQ+ +++A V + + L + T +
Sbjct: 22 EPVGYNEIVNIKMGDGTVRRGQV------LDSSADIVVVQVFEGTGGLDKDCGVIFTGET 75
Query: 190 FEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSID 249
++P +LLGRI++ GE D + + + A R + + TGI +ID
Sbjct: 76 LKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTID 135
Query: 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTI----INQKNKNVICIYVCIGQKISSLINVIN 305
+ +GQ+ I IA+ + ++ +G ++
Sbjct: 136 GTNTLVRGQKLPIFSASGLPANEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMS 195
Query: 306 KLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHAWA 364
+ ++ E+ ++P T EY + G L+I D+T +A A
Sbjct: 196 DFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEA 255
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
RQ+ PGR +PG ++ + L ER+ I G++T PI+
Sbjct: 256 LRQMGAARNEVPGRRGYPGYMYTDLATLYERAG-----------IVKGAKGSVTQIPILS 304
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T IP IT+GQI + L P INV S+SR +G +
Sbjct: 305 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDH 364
Query: 480 KKLSGDIRIMLAQYRELESF 499
K +S + A+ R+L
Sbjct: 365 KAVSDQMYAGYAEGRDLRGL 384
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 147/341 (43%), Gaps = 26/341 (7%)
Query: 589 NIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKG--------E 640
+IV F T G+ ++ V+ TG+ + P LGRIL+ G+P D +
Sbjct: 59 DIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLD 118
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMM 700
IN +P LPPK + ++TGI ID + +
Sbjct: 119 INGAAMNPYARLPPK--------DFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIAL 170
Query: 701 ELIRNIAI---EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL 757
++ R ++ E VF +G + E F + +++ L++ + ++P+ R+
Sbjct: 171 QIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230
Query: 758 RVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816
L+ AE G VL+ + +I + A ++ A P GY + ++
Sbjct: 231 VTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLA 290
Query: 817 KLQERISSTKN--GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
L ER K G++T + + +P DD+T P P + + IV++R++ GIYP I
Sbjct: 291 TLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPI 350
Query: 875 DPLESYSKQLDPYIVG----EEHYKVANEVKFYLQKYKELK 911
+ L S S+ ++ I E+H V++++ + ++L+
Sbjct: 351 NVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLR 391
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 147/380 (38%), Gaps = 27/380 (7%)
Query: 130 DPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKI 189
+P N+ +NIK + TV GQ+ +++A V + + L + T +
Sbjct: 31 EPVGYNEIVNIKMGDGTVRRGQV------LDSSADIVVVQVFEGTGGLDKDCGVIFTGET 84
Query: 190 FEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSID 249
++P +LLGRI++ GE D + + + A R + + TGI +ID
Sbjct: 85 LKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTID 144
Query: 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTI----INQKNKNVICIYVCIGQKISSLINVIN 305
+ +GQ+ I IA+ + ++ +G ++
Sbjct: 145 GTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMS 204
Query: 306 KLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHAWA 364
+ ++ E+ ++P T EY + G L+I D+T +A A
Sbjct: 205 DFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEA 264
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
RQ+ PGR +PG ++ + L ER+ I G++T PI+
Sbjct: 265 LRQMGAARNEVPGRRGYPGYMYTDLATLYERAG-----------IVKGAKGSVTQIPILS 313
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T IP IT+GQI + L P INV S+SR +G +
Sbjct: 314 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDH 373
Query: 480 KKLSGDIRIMLAQYRELESF 499
K +S + A+ R+L
Sbjct: 374 KAVSDQMYAGYAEGRDLRGL 393
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 147/341 (43%), Gaps = 26/341 (7%)
Query: 589 NIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKG--------E 640
+IV F T G+ ++ V+ TG+ + P LGRIL+ G+P D +
Sbjct: 59 DIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLD 118
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMM 700
IN +P LPPK + ++TGI ID + +
Sbjct: 119 INGAAMNPYARLPPK--------DFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIAL 170
Query: 701 ELIRNIAI---EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL 757
++ R ++ E VF +G + E F + +++ L++ + ++P+ R+
Sbjct: 171 QIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230
Query: 758 RVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816
L+ AE G VL+ + +I + A ++ A P GY + ++
Sbjct: 231 VTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLA 290
Query: 817 KLQERISSTKN--GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
L ER K G++T + + +P DD+T P P + + IV++R++ GIYP I
Sbjct: 291 TLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPI 350
Query: 875 DPLESYSKQLDPYIVG----EEHYKVANEVKFYLQKYKELK 911
+ L S S+ ++ I E+H V++++ + ++L+
Sbjct: 351 NVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLR 391
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/380 (22%), Positives = 147/380 (38%), Gaps = 27/380 (7%)
Query: 130 DPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKI 189
+P N+ +NIK + TV GQ+ +++A V + + L + T +
Sbjct: 31 EPVGYNEIVNIKMGDGTVRRGQV------LDSSADIVVVQVFEGTGGLDKDCGVIFTGET 84
Query: 190 FEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSID 249
++P +LLGRI++ GE D + + + A R + + TGI +ID
Sbjct: 85 LKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTID 144
Query: 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTI----INQKNKNVICIYVCIGQKISSLINVIN 305
+ +GQ+ I IA+ + ++ +G ++
Sbjct: 145 GTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMS 204
Query: 306 KLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHAWA 364
+ ++ E+ ++P T EY + G L+I D+T +A A
Sbjct: 205 DFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEA 264
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
RQ+ PGR +PG ++ + L ER+ I G++T PI+
Sbjct: 265 LRQMGAARNEVPGRRGYPGYMYTDLATLYERAG-----------IVKGAKGSVTQIPILS 313
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T IP IT+GQI + L P INV S+SR +G +
Sbjct: 314 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDH 373
Query: 480 KKLSGDIRIMLAQYRELESF 499
K +S + A+ R+L
Sbjct: 374 KAVSDQMYAGYAEGRDLRGL 393
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 124/291 (42%), Gaps = 26/291 (8%)
Query: 190 FEIPVGFELLGRIVNSKGEFIDN-----KKKFLIKNRETVEKIAPGIMDRESVNEPLLTG 244
++ V +++GR+ + G DN +K+L N E + IA R+ +E + TG
Sbjct: 84 LQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIA-----RDYPDEFIQTG 138
Query: 245 IKSIDSMIPIGKGQRELIIGD----RQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSL 300
I +ID + + +GQ+ + + IA + + + ++ IG
Sbjct: 139 ISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEA 198
Query: 301 INVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLT 359
+ + +D E+ +P T EY + G L+I D+T
Sbjct: 199 EFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258
Query: 360 KHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419
+A A R+IS R PGR +PG ++ + L ER+ +I G++T
Sbjct: 259 NYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGL-----------KGSVTQ 307
Query: 420 FPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
PI+ E D T IP IT+GQI L L+ S +P I+V S+SR+
Sbjct: 308 IPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRL 358
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 125/297 (42%), Gaps = 7/297 (2%)
Query: 596 FGNTNGIK-RNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPP 654
F T+GI +N+ V G P+ V + +GR+ + LG P DN EI +K I+
Sbjct: 64 FEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVI 123
Query: 655 KFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKG-- 712
+ + + ++TGI ID L + ++ R +
Sbjct: 124 NPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDD 183
Query: 713 -CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR 771
VF +G E F + +++ +D+ + N+P+ R+ L+ AE
Sbjct: 184 FAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLA 243
Query: 772 -NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKN--G 828
G VL+ + ++ + A E+SA P GY L + L ER + G
Sbjct: 244 YEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGLKG 303
Query: 829 TITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLD 885
++T + + +P DD T P P T + I+L+R++ + GI P ID L S S+ D
Sbjct: 304 SVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKD 360
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 17/294 (5%)
Query: 624 LGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXX 683
LGR N +G PID I +K+ PI LP + ++TGI ID++ +
Sbjct: 89 LGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQ 148
Query: 684 XXXXXXXXXXXXTVNMMELIRNIAI----------EHKGCSVFIGVGERSREGNDFYHEM 733
++ R + E VF +G RE + F E
Sbjct: 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEF 208
Query: 734 KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGT 792
+ + L + L + ++P+ R+ L++AE VL+ + ++ ++ A
Sbjct: 209 ERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALR 268
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQER--ISSTKNGTITSVQAIYVPADDLTDPSPST 850
E+ A P GY + ++ + ER + K G++T + + +P DD T P P
Sbjct: 269 EIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHPIPDL 328
Query: 851 TFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYI----VGEEHYKVANEV 900
T + I LSR++ GIYP IDPL S S+ ++ + E+H +V++++
Sbjct: 329 TGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQL 382
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 150/382 (39%), Gaps = 40/382 (10%)
Query: 105 LIKKITGLNYSS----IIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEE 160
L K+ TG+ Y S + A ++ Y ++IK V GQ+ + E
Sbjct: 4 LKKEYTGITYISGPLLFVENAKDLAY--------GAIVDIKDGTGRVRGGQVIEVS-EEY 54
Query: 161 AAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKN 220
A Q F DL + E + + V E+LGR N G+ ID +
Sbjct: 55 AVIQVFEETTGLDLATTS----VSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEK 110
Query: 221 RETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELI----------IGDRQTGK 270
R + + + R + + TGI +ID M + +GQ+ I I + +
Sbjct: 111 RLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQ 170
Query: 271 TTIAID-TIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXE 329
T+ D + +K + ++ +G L I + + + E
Sbjct: 171 ATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIE 230
Query: 330 QYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYL 388
+ ++P T+ EY + L+I D+T ++ A R+I PGR +PG ++
Sbjct: 231 RILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTD 290
Query: 389 HSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFL 448
+ + ER+ +E KK G++T PI+ + D T IP IT+GQI L
Sbjct: 291 LATIYERAG-----VVEGKK------GSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQL 339
Query: 449 DTNLFNSNYRPAINVGLSVSRV 470
L P I+ S+SR+
Sbjct: 340 SRELHRKGIYPPIDPLPSLSRL 361
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 17/294 (5%)
Query: 624 LGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXX 683
LGR N +G PID I +K+ PI LP + ++TGI ID++ +
Sbjct: 89 LGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQ 148
Query: 684 XXXXXXXXXXXXTVNMMELIRNIAI----------EHKGCSVFIGVGERSREGNDFYHEM 733
++ R + E VF +G RE + F E
Sbjct: 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEF 208
Query: 734 KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGT 792
+ + L + L + ++P+ R+ L++AE VL+ + ++ + A
Sbjct: 209 ERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYCEALR 268
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQER--ISSTKNGTITSVQAIYVPADDLTDPSPST 850
E+ A P GY + ++ + ER + K G++T + + +P DD T P P
Sbjct: 269 EIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHPIPDL 328
Query: 851 TFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYI----VGEEHYKVANEV 900
T + I LSR++ GIYP IDPL S S+ ++ + E+H +V++++
Sbjct: 329 TGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQL 382
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/382 (23%), Positives = 149/382 (39%), Gaps = 40/382 (10%)
Query: 105 LIKKITGLNYSS----IIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEE 160
L K+ TG+ Y S + A ++ Y ++IK V GQ+ + E
Sbjct: 4 LKKEYTGITYISGPLLFVENAKDLAY--------GAIVDIKDGTGRVRGGQVIEVS-EEY 54
Query: 161 AAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKN 220
A Q F DL + E + + V E+LGR N G+ ID +
Sbjct: 55 AVIQVFEETTGLDLATTS----VSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEK 110
Query: 221 RETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELI----------IGDRQTGK 270
R + + + R + + TGI +ID M + +GQ+ I I + +
Sbjct: 111 RLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQ 170
Query: 271 TTIAID-TIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYXXXXXXXXXXXXXE 329
T+ D + +K + ++ +G L I + + + E
Sbjct: 171 ATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIE 230
Query: 330 QYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYL 388
+ ++P T+ EY + L+I D+T + A R+I PGR +PG ++
Sbjct: 231 RILTPRMALTVAEYLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTD 290
Query: 389 HSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFL 448
+ + ER+ +E KK G++T PI+ + D T IP IT+GQI L
Sbjct: 291 LATIYERAG-----VVEGKK------GSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQL 339
Query: 449 DTNLFNSNYRPAINVGLSVSRV 470
L P I+ S+SR+
Sbjct: 340 SRELHRKGIYPPIDPLPSLSRL 361
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 133/321 (41%), Gaps = 38/321 (11%)
Query: 616 LTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDL 675
+ P G+ T+ + VL ++ E+ P+ P ++ N TG++++D+
Sbjct: 160 VKPAGEYTVEEPVVVL----EDGTELKMYHTWPVRRARP-VQRKLDPNTPFLTGMRILDV 214
Query: 676 LCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE 735
L P TV L + + V++G GER E D E E
Sbjct: 215 LFPVAMGGTAAIPGPFGSGKTVTQQSLAK---WSNADVVVYVGCGERGNEMTDVLVEFPE 271
Query: 736 -------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788
++ + LI N P R G++IAE FR+ G V L D+ R+
Sbjct: 272 LTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWA 331
Query: 789 LAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST-----KNGTITSVQAIYVPADDL 843
A E+S+ L P+ GY P LA + ER + G +T V A+ P D+
Sbjct: 332 EALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDM 391
Query: 844 TDPSPSTT------FTHLDSTIVLSRQIAELGIYPAIDPLESYS---KQLDPYI---VGE 891
++P +T F LD+++ R +PAI+ SYS LDP+ V E
Sbjct: 392 SEPVTQSTLRIVGAFWRLDASLAFRRH------FPAINWNGSYSLFTSALDPWYRENVAE 445
Query: 892 EHYKVANEVKFYLQKYKELKD 912
++ ++ + + LQ+ L++
Sbjct: 446 DYPELRDAISELLQREAGLQE 466
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 98/235 (41%), Gaps = 23/235 (9%)
Query: 238 NEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKI 297
N P LTG++ +D + P+ G I G +GKT + ++ N +V+ +YV G++
Sbjct: 202 NTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKT-VTQQSLAKWSNADVV-VYVGCGERG 259
Query: 298 SSLINVINKLKYYN-------CMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQD 350
+ + +V+ + M + S Y G TI EYFRD G
Sbjct: 260 NEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFS 319
Query: 351 CLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLL---ERSSKINKYFLEKK 407
++ D ++ A A R+IS L P E +P YL +RL ER+ K+
Sbjct: 320 VALMADSTSRWAEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAGKVIT------ 370
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAIN 462
G +T + GD++ + + + I LD +L + PAIN
Sbjct: 371 --LGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAIN 423
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 133/321 (41%), Gaps = 38/321 (11%)
Query: 616 LTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDL 675
+ P G+ T+ + VL ++ E+ P+ P ++ N TG++++D+
Sbjct: 160 VKPAGEYTVEEPVVVL----EDGTELKMYHTWPVRRARP-VQRKLDPNTPFLTGMRILDV 214
Query: 676 LCPFLXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE 735
L P +V L + + V++G GER E D E E
Sbjct: 215 LFPVAMGGTAAIPGPFGSGKSVTQQSLAK---WSNADVVVYVGSGERGNEMTDVLVEFPE 271
Query: 736 -------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788
++ + LI N P R G++IAE FR+ G V L D+ R+
Sbjct: 272 LTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWA 331
Query: 789 LAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST-----KNGTITSVQAIYVPADDL 843
A E+S+ L P+ GY P LA + ER + G +T V A+ P D+
Sbjct: 332 EALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDM 391
Query: 844 TDPSPSTT------FTHLDSTIVLSRQIAELGIYPAIDPLESYS---KQLDPYI---VGE 891
++P +T F LD+++ R +PAI+ SYS LDP+ V E
Sbjct: 392 SEPVTQSTLRIVGAFWRLDASLAFRRH------FPAINWNGSYSLFTSALDPWYRENVAE 445
Query: 892 EHYKVANEVKFYLQKYKELKD 912
++ ++ + + LQ+ L++
Sbjct: 446 DYPELRDAISELLQREAGLQE 466
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 23/235 (9%)
Query: 238 NEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKI 297
N P LTG++ +D + P+ G I G +GK+ + ++ N +V+ +YV G++
Sbjct: 202 NTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKS-VTQQSLAKWSNADVV-VYVGSGERG 259
Query: 298 SSLINVINKLKYYN-------CMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQD 350
+ + +V+ + M + S Y G TI EYFRD G
Sbjct: 260 NEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFS 319
Query: 351 CLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLL---ERSSKINKYFLEKK 407
++ D ++ A A R+IS L P E +P YL +RL ER+ K+
Sbjct: 320 VALMADSTSRWAEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAGKVIT------ 370
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAIN 462
G +T + GD++ + + + I LD +L + PAIN
Sbjct: 371 --LGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAIN 423
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 123/291 (42%), Gaps = 26/291 (8%)
Query: 190 FEIPVGFELLGRIVNSKGEFIDN-----KKKFLIKNRETVEKIAPGIMDRESVNEPLLTG 244
++ V + +GR+ + G DN +K+L N E + IA R+ +E + TG
Sbjct: 84 LQLGVSEDXIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIA-----RDYPDEFIQTG 138
Query: 245 IKSIDSMIPIGKGQRELIIGD----RQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSL 300
I +ID + + +GQ+ + + IA + + + ++ IG
Sbjct: 139 ISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEA 198
Query: 301 INVINKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLT 359
+ +D E+ +P T EY + G L+I D T
Sbjct: 199 EFFXEDFRQTGAIDRSVXFXNLANDPAIERIATPRXALTAAEYLAYEKGXHVLVIXTDXT 258
Query: 360 KHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419
+A A R+IS R PGR +PG ++ + L ER+ +I G++T
Sbjct: 259 NYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRGL-----------KGSVTQ 307
Query: 420 FPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
PI+ E D T IP IT+GQI L L+ S +P I+V S+SR+
Sbjct: 308 IPILTXPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRL 358
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 125/308 (40%), Gaps = 7/308 (2%)
Query: 585 QIGENIVRTIAFGNTNGIK-RNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINS 643
++ E+ F T+GI +N+ V G P+ V + +GR+ + LG P DN EI
Sbjct: 53 EVQEDKAXVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRPKDNGPEILP 112
Query: 644 KKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELI 703
+K I+ + + + ++TGI ID L + ++
Sbjct: 113 EKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIA 172
Query: 704 RNIAIEHKG---CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
R + VF +G E F + +++ +D+ N+P+ R+
Sbjct: 173 RQATVLDSSDDFAVVFAAIGITFEEAEFFXEDFRQTGAIDRSVXFXNLANDPAIERIATP 232
Query: 761 LTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819
L+ AE G VL+ + + A E+SA P GY L + L
Sbjct: 233 RXALTAAEYLAYEKGXHVLVIXTDXTNYAEALREISAARREVPGRRGYPGYLYTNLATLF 292
Query: 820 ERISSTKN--GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPL 877
ER + G++T + + P DD T P P T + I+L+R++ + GI P ID L
Sbjct: 293 ERAGRIRGLKGSVTQIPILTXPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVL 352
Query: 878 ESYSKQLD 885
S S+ D
Sbjct: 353 PSLSRLKD 360
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPFGSAKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 147/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G + KT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPFGSAKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPAGSGKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G +GKT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPAGSGKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHWPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G +GKT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPFGSGKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHWPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGAFGSGKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G +GKT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGAFGSGKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPAPFGSGKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 147/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I +GKT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPAPFGSGKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPFASGKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G +GKT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPFASGKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G +GKT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPFGSGKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPFGSGATVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 147/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G +G T+ + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPFGSG-ATVTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPFGAGKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G GKT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPFGAGKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G +GKT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPFGSGKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 127/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
TV +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 148/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G +GKT + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPFGSGKT-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 126/318 (39%), Gaps = 34/318 (10%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
GD T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LXXXXXXXXXXXXXXXTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE---- 735
V +L + ++IG GER E D E +
Sbjct: 225 AKGGTAAIPGPFGSGKAVTQHQLAK---WSDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 736 ---SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGT 792
++++ LI N P R TG++IAE FR+ G DV L D+ R+ A
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTD 845
E+S L P GY LA ++ + ER S + G+++ + A+ P D ++
Sbjct: 342 EISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSE 401
Query: 846 PSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS-----------KQLDPYIVGEEHY 894
P T + L +A +PAI+ L SYS K +DP E
Sbjct: 402 PVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDP-----EWK 456
Query: 895 KVANEVKFYLQKYKELKD 912
+ ++ LQK EL++
Sbjct: 457 AMRDKAMALLQKESELQE 474
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 147/347 (42%), Gaps = 27/347 (7%)
Query: 197 ELLGRIVNSKGEFIDNK--KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP 253
E++ ++ GE + K +++ ++ R EK+ P + PL+TG + ID+ P
Sbjct: 172 EVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEV--------PLITGQRVIDTFFP 223
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN---KLKYY 310
KG I G +GK + + + V+ IY+ G++ + + +V+ KLK
Sbjct: 224 QAKGGTAAIPGPFGSGKA-VTQHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 311 NC----MDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M+ + S YTG TI EYFRD+G D ++ D ++ A A R
Sbjct: 282 KTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALR 341
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+IS L PG E +P YL S+L E + + + G+++ +
Sbjct: 342 EISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGS---DYRVGSVSVIGAVSPP 395
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
GD + + N + + LD +L + PAIN S S A + K + +
Sbjct: 396 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEW 455
Query: 487 RIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENY 532
+ M + L+ S+ + IV L E+ LL+ + E+Y
Sbjct: 456 KAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDY 502
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 23/234 (9%)
Query: 240 PLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISS 299
P +TG + ID+ P+ KG + G GKT + I + + + +YV G++ +
Sbjct: 215 PXITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQ--IAKWSDVDLVVYVGCGERGNE 272
Query: 300 LINVINKLKYY-------NCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCL 352
+V+N+ + + + S YTG TI EYFRD G D
Sbjct: 273 XTDVVNEFPELIDPNTGESLXERTVLIANTSNXPVAAREASIYTGITIAEYFRDXGYDVA 332
Query: 353 IIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIF-- 410
I D ++ A A R+ S L PG E +P YL SRL E Y+ ++
Sbjct: 333 IXADSTSRWAEALREXSGRLEEXPGDEGYPA---YLGSRLAE-------YYERSGRVIAL 382
Query: 411 --NKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAIN 462
++ G++TA + GD++ + N + + LD++L + P+IN
Sbjct: 383 GSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSIN 436
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 109/263 (41%), Gaps = 32/263 (12%)
Query: 640 EINSKKKSPIHTLPPKFSNQIFNNNILE-TGIKVIDLLCPFLXXXXXXXXXXXXXXXTVN 698
E+ +K P+ P Q N ++ TG +VID P TV
Sbjct: 191 ELTXXQKWPVRRGRP--IKQKLNPDVPXITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVV 248
Query: 699 MMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE-------SNVLDKVSLIYGQMNE 751
++ + ++ V++G GER E D +E E ++ ++ LI N
Sbjct: 249 QHQIAKWSDVD---LVVYVGCGERGNEXTDVVNEFPELIDPNTGESLXERTVLIANTSNX 305
Query: 752 PSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTL 811
P R TG++IAE FR+ G DV + D+ R+ A E S L P GY L
Sbjct: 306 PVAAREASIYTGITIAEYFRDXGYDVAIXADSTSRWAEALREXSGRLEEXPGDEGYPAYL 365
Query: 812 AEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTDPSPSTT------FTHLDST 858
+ + ER S + G+IT++ A+ D+++P T F LDS+
Sbjct: 366 GSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSS 425
Query: 859 IVLSRQIAELGIYPAIDPLESYS 881
+ R +P+I+ ++SYS
Sbjct: 426 LAQKRH------FPSINWIQSYS 442
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Glutathione
Length = 443
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 85 SRELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFAYNIEYDYFD-PRCLNQTLNIKFA 143
R L G T L QK+LI+ I GL + I+R+ Y + PR L +TL + A
Sbjct: 269 GRXWSLVGFQTGLKWPEQKRLIQXIPGLENAEIVRYGVXHRNTYLNAPRLLGETLEFREA 328
Query: 144 NNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNL 177
+G + G GY E+AA GF+A L K L
Sbjct: 329 EGLYAAGVLAGVEGYLESAATGFLAGLNAARKAL 362
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Tetrahydrofolate
Length = 443
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 85 SRELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFAYNIEYDYFD-PRCLNQTLNIKFA 143
R L G T L QK+LI+ I GL + I+R+ Y + PR L +TL + A
Sbjct: 269 GRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGETLEFREA 328
Query: 144 NNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNL 177
+G + G GY E+AA GF+A L K L
Sbjct: 329 EGLYAAGVLAGVEGYLESAATGFLAGLNAARKAL 362
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 105/265 (39%), Gaps = 20/265 (7%)
Query: 642 NSKKKSPIHTLPPKFSNQIF-----NNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXT 696
N++ K L P +N N + + +V+DL P T
Sbjct: 148 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT 207
Query: 697 VNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNR 756
+ + + ++IA H C + + + + E E+ E L K ++ +EP+
Sbjct: 208 MLLQNIAQSIAYNHPDCVLMVLLIDERPE------EVTEMQRLVKGEVVASTFDEPASRH 261
Query: 757 LRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816
++VA + A+ KDV++ +D+I R A V G+ + G A +
Sbjct: 262 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVD---ANALH 317
Query: 817 KLQERISSTKN----GTITSVQAIYVPADDLTDPSPSTTFTHL-DSTIVLSRQIAELGIY 871
+ + + +N G++T + + D F + + LSR+IAE ++
Sbjct: 318 RPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVF 377
Query: 872 PAIDPLESYSKQLDPYIVGEEHYKV 896
PAID S +++ + EE K+
Sbjct: 378 PAIDYNRSGTRKEELLTTQEELQKM 402
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 105/265 (39%), Gaps = 20/265 (7%)
Query: 642 NSKKKSPIHTLPPKFSNQIF-----NNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXT 696
N++ K L P +N N + + +V+DL P T
Sbjct: 126 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT 185
Query: 697 VNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNR 756
+ + + ++IA H C + + + + E E+ E L K ++ +EP+
Sbjct: 186 MLLQNIAQSIAYNHPDCVLMVLLIDERPE------EVTEMQRLVKGEVVASTFDEPASRH 239
Query: 757 LRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816
++VA + A+ KDV++ +D+I R A V G+ + G A +
Sbjct: 240 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVD---ANALH 295
Query: 817 KLQERISSTKN----GTITSVQAIYVPADDLTDPSPSTTFTHL-DSTIVLSRQIAELGIY 871
+ + + +N G++T + + D F + + LSR+IAE ++
Sbjct: 296 RPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVF 355
Query: 872 PAIDPLESYSKQLDPYIVGEEHYKV 896
PAID S +++ + EE K+
Sbjct: 356 PAIDYNRSGTRKEELLTTQEELQKM 380
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 101/254 (39%), Gaps = 16/254 (6%)
Query: 647 SPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNI 706
+P+H + + N + + +V+DL P T + + ++I
Sbjct: 137 TPLHA-NSRLRXERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTXLLQNIAQSI 195
Query: 707 AIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSI 766
A H C + + + + E E+ E L K ++ +EP+ ++VA +
Sbjct: 196 AYNHPDCVLXVLLIDERPE------EVTEXQRLVKGEVVASTFDEPASRHVQVAEXVIEK 249
Query: 767 AEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTK 826
A+ KDV++ +D+I R A V G+ + G A + + + + +
Sbjct: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVD---ANALHRPKRFFGAAR 305
Query: 827 N----GTITSVQAIYVPADDLTDPSPSTTFTHL-DSTIVLSRQIAELGIYPAIDPLESYS 881
N G++T + + D F + + LSR+IAE ++PAID S +
Sbjct: 306 NVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXELHLSRKIAEKRVFPAIDYNRSGT 365
Query: 882 KQLDPYIVGEEHYK 895
++ + EE K
Sbjct: 366 RKEELLTTQEELQK 379
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 101/254 (39%), Gaps = 16/254 (6%)
Query: 647 SPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNI 706
+P+H + + N + + +V+DL P T + + ++I
Sbjct: 140 TPLHA-NSRLRXERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTXLLQNIAQSI 198
Query: 707 AIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSI 766
A H C + + + + E E+ E L K ++ +EP+ ++VA +
Sbjct: 199 AYNHPDCVLXVLLIDERPE------EVTEXQRLVKGEVVASTFDEPASRHVQVAEXVIEK 252
Query: 767 AEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTK 826
A+ KDV++ +D+I R A V G+ + G A + + + + +
Sbjct: 253 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVD---ANALHRPKRFFGAAR 308
Query: 827 N----GTITSVQAIYVPADDLTDPSPSTTFTHL-DSTIVLSRQIAELGIYPAIDPLESYS 881
N G++T + + D F + + LSR+IAE ++PAID S +
Sbjct: 309 NVEEGGSLTIIATALIDTGSKXDEVIYEEFKGTGNXELHLSRKIAEKRVFPAIDYNRSGT 368
Query: 882 KQLDPYIVGEEHYK 895
++ + EE K
Sbjct: 369 RKEELLTTQEELQK 382
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 101/269 (37%), Gaps = 31/269 (11%)
Query: 239 EPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTI--AIDTIINQKNKNVICIYVCIGQK 296
+P + + ID PIGKGQR +I+ + GKTTI I I + + + I I + I ++
Sbjct: 157 DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDER 216
Query: 297 ISSLINV---INKLKYYNCMDYXXXXXXXXXXXXXEQYISPYTGCTIGEYFRDLGQDCLI 353
+ ++ N + D E + + + D +I
Sbjct: 217 PEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLE----------MAKRLVEFNYDVVI 266
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPG--DVFYLHSRLLERSSKINKYFLEKKKIFN 411
+ D LT+ A Y + PP + G D L+ K ++F +
Sbjct: 267 LLDSLTRLARVYNIVV-----PPSGKLLTGGVDPAALY--------KPKRFFGAARNTRE 313
Query: 412 KNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVG 471
+ T+ A ++ET + I + ++ L L N PAIN+ LS +R
Sbjct: 314 GGSLTIIATALVET-GSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRRE 372
Query: 472 GAAQYKIVKKLSGDIRIMLAQYRELESFS 500
+ K +R ML+ E E +
Sbjct: 373 ELLLDEETLKKVWLLRRMLSAMTEEEGLT 401
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 94/243 (38%), Gaps = 25/243 (10%)
Query: 652 LPPKFSNQIFNNNILETGIKV-----IDLLCPFLXXXXXXXXXXXXXXXTVNMMELIRNI 706
L P + + F ILET K+ IDL P T + E+ I
Sbjct: 143 LTPDYPRERF---ILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199
Query: 707 AIEHKGC-SVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLS 765
A H + + + ER E D ++ES +I + P +++VA L
Sbjct: 200 AENHPDTIRIILLIDERPEEVTD----IREST---NAIVIAAPFDMPPDKQVKVAELTLE 252
Query: 766 IAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST 825
+A+ DV++ +D++ R V G+ + G P + + +T
Sbjct: 253 MAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTG-GVDPAALYKPKRFFGAARNT 311
Query: 826 KNG-TITSVQAIYVPADDLTDPSPSTTFTHLDST----IVLSRQIAELGIYPAIDPLESY 880
+ G ++T + V D F T +VLSRQ+A I+PAI+ L S
Sbjct: 312 REGGSLTIIATALVETGSKMD---EVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSG 368
Query: 881 SKQ 883
+++
Sbjct: 369 TRR 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,582,693
Number of Sequences: 62578
Number of extensions: 1005118
Number of successful extensions: 2945
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2526
Number of HSP's gapped (non-prelim): 190
length of query: 915
length of database: 14,973,337
effective HSP length: 108
effective length of query: 807
effective length of database: 8,214,913
effective search space: 6629434791
effective search space used: 6629434791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)