BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy210
(915 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05FY3|ATPA_CARRP ATP synthase subunit alpha OS=Carsonella ruddii (strain PV) GN=atpA
PE=3 SV=1
Length = 481
Score = 625 bits (1612), Expect = e-178, Method: Compositional matrix adjust.
Identities = 314/412 (76%), Positives = 358/412 (86%), Gaps = 1/412 (0%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
+++++ LTQG+KC+CT KIFE+PVG +L+GRI+NS+GE +D + I +EKIA
Sbjct: 50 IILNNYNELTQGEKCYCTNKIFEVPVGKQLIGRIINSRGETLDLLPEIKINEFSPIEKIA 109
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288
PG+MDRE+VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTI IDTIINQKNKN+IC
Sbjct: 110 PGVMDRETVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTICIDTIINQKNKNIIC 169
Query: 289 IYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLG 348
+YVCIGQKISSLIN+INKLK +NC++YT++VA+TA+DSAAEQYI+PYTG TI EYFRD G
Sbjct: 170 VYVCIGQKISSLINIINKLKKFNCLEYTIIVASTASDSAAEQYIAPYTGSTISEYFRDKG 229
Query: 349 QDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKK 408
QDCLI+YDDLTKHAWAYRQISLLLRRPPGREA+PGDVFYLHSRLLERSSK+NK+F+ KK
Sbjct: 230 QDCLIVYDDLTKHAWAYRQISLLLRRPPGREAYPGDVFYLHSRLLERSSKVNKFFVNKKS 289
Query: 409 IFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS 468
K G+LTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNS RP+INVGLSVS
Sbjct: 290 NILK-AGSLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSGIRPSINVGLSVS 348
Query: 469 RVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKP 528
RVGGAAQYKI+KKLSGDIRIMLAQYRELE+FSKFSSDLD TK QL GEKI++LMKQ
Sbjct: 349 RVGGAAQYKIIKKLSGDIRIMLAQYRELEAFSKFSSDLDSETKNQLIIGEKITILMKQNI 408
Query: 529 HENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISIN 580
H+ Y I ELI+ILLIIK+ FF IPI Q+E FE II Y R I KN I I+
Sbjct: 409 HDVYDIFELILILLIIKHDFFRLIPINQVEYFENKIINYLRKIKFKNQIEID 460
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 22/340 (6%)
Query: 591 VRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIH 650
V I N N + + T K PVG +GRI+N G+ +D EI + SPI
Sbjct: 47 VNIIILNNYNELTQGEKCYCTNKIFEVPVGKQLIGRIINSRGETLDLLPEIKINEFSPIE 106
Query: 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH 710
+ P ++ N L TGIK ID + P KG + + G GKT ++ I N ++
Sbjct: 107 KIAPGVMDRETVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTICIDTIINQKNKN 166
Query: 711 KGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEF 770
C V++ +G++ + +++K+ N L+ ++ ++ + + TG +I+E F
Sbjct: 167 IIC-VYVCIGQKISSLINIINKLKKFNCLEYTIIVASTASDSAAEQYIAPYTGSTISEYF 225
Query: 771 RNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST----- 825
R+ G+D L+ D++ + A ++S +L R P Y + +L ER S
Sbjct: 226 RDKGQDCLIVYDDLTKHAWAYRQISLLLRRPPGREAYPGDVFYLHSRLLERSSKVNKFFV 285
Query: 826 -------KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLE 878
K G++T+ I D+T P+ + D I L + GI P+I+
Sbjct: 286 NKKSNILKAGSLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSGIRPSINVGL 345
Query: 879 SYSKQLDPYIVGEEHYKV----ANEVKFYLQKYKELKDTS 914
S S+ + G YK+ + +++ L +Y+EL+ S
Sbjct: 346 SVSR-----VGGAAQYKIIKKLSGDIRIMLAQYRELEAFS 380
>sp|Q05FY1|ATPB_CARRP ATP synthase subunit beta OS=Carsonella ruddii (strain PV) GN=atpD
PE=3 SV=1
Length = 447
Score = 613 bits (1580), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/333 (89%), Positives = 316/333 (94%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQIG NIVRTIA G+T G+KR +V+DT KPILTPVG+CTLGRILNVLG+PIDN GE
Sbjct: 39 EVQQQIGNNIVRTIALGSTYGLKRYLLVIDTKKPILTPVGNCTLGRILNVLGNPIDNNGE 98
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I S KK PIH PPKFS+Q+F+NNILETGIKVIDLLCPFL+GGKIGLFGGAGVGKT+NMM
Sbjct: 99 IISNKKKPIHCSPPKFSDQVFSNNILETGIKVIDLLCPFLRGGKIGLFGGAGVGKTINMM 158
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEHKGCSVFIGVGER+REGNDFY+EMKESNVLDKVSLIYGQMNEPSGNRLRVA
Sbjct: 159 ELIRNIAIEHKGCSVFIGVGERTREGNDFYYEMKESNVLDKVSLIYGQMNEPSGNRLRVA 218
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGLSIAEEFR GKDVLLFIDNIYRFTLAGTE+SA+LGR PSAVGYQPTLAEEMGKLQE
Sbjct: 219 LTGLSIAEEFREMGKDVLLFIDNIYRFTLAGTEISALLGRMPSAVGYQPTLAEEMGKLQE 278
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RISSTKNG+ITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY
Sbjct: 279 RISSTKNGSITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 338
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKDT 913
SKQLDPYIVG EHY++AN VKFYLQKYKELKDT
Sbjct: 339 SKQLDPYIVGIEHYEIANSVKFYLQKYKELKDT 371
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 23/318 (7%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGI 245
T+K PVG LGRI+N G IDN + + ++ + P D+ N L TGI
Sbjct: 69 TKKPILTPVGNCTLGRILNVLGNPIDNNGEIISNKKKPIHCSPPKFSDQVFSNNILETGI 128
Query: 246 KSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC-IYVCIGQKISSLINVI 304
K ID + P +G + + G GKT ++ I N ++ C +++ +G++ +
Sbjct: 129 KVIDLLCPFLRGGKIGLFGGAGVGKTINMMELIRNIAIEHKGCSVFIGVGERTREGNDFY 188
Query: 305 NKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364
++K N +D ++ + + + TG +I E FR++G+D L+ D++ + A
Sbjct: 189 YEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFREMGKDVLLFIDNIYRFTLA 248
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
+IS LL R P + L E K+ +++I + NG++T+ I
Sbjct: 249 GTEISALLGRMPSAVGY-------QPTLAEEMGKL------QERISSTKNGSITSVQAIY 295
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T P+ + D I L + PAI+ S S+ + G Y+I
Sbjct: 296 VPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGIEHYEI- 354
Query: 480 KKLSGDIRIMLAQYRELE 497
+ ++ L +Y+EL+
Sbjct: 355 ---ANSVKFYLQKYKELK 369
>sp|Q1QSD0|ATPB_CHRSD ATP synthase subunit beta OS=Chromohalobacter salexigens (strain
DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=atpD PE=3 SV=1
Length = 458
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/356 (69%), Positives = 294/356 (82%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + K + + + + +I +VQQQ+G+ +VR IA G T G+KR VV++G I
Sbjct: 15 VEFPRDAVPKVYDALKVSDTETILEVQQQLGDGVVRAIAMGTTEGLKRGLDVVNSGSAIS 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID GEI ++ PIH P ++ Q +N +LETGIKVIDL+
Sbjct: 75 VPVGKATLGRIMNVLGEPIDEAGEIGEDERMPIHRKAPSYAEQAASNELLETGIKVIDLV 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIA EH G SVF GVGER+REGNDFYHEM+ES
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIATEHSGYSVFAGVGERTREGNDFYHEMQES 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL+IAE+FR+ G+DVLLF+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTIAEKFRDDGRDVLLFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF+HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFSHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+T+VL+R IAELGIYPAIDPL+S S+QLDP VGEEHY A V+ LQ+YKELKD
Sbjct: 315 ATVVLARSIAELGIYPAIDPLDSTSRQLDPLTVGEEHYNTARGVQGVLQRYKELKD 370
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 146/336 (43%), Gaps = 23/336 (6%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
A+ + + L +G + +PVG LGRI+N GE ID + R + +
Sbjct: 51 AIAMGTTEGLKRGLDVVNSGSAISVPVGKATLGRIMNVLGEPIDEAGEIGEDERMPIHRK 110
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNV- 286
AP ++ + NE L TGIK ID + P KG + + G GKT ++ I N ++
Sbjct: 111 APSYAEQAASNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIATEHSG 170
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD 346
++ +G++ + ++++ N +D +V + + TG TI E FRD
Sbjct: 171 YSVFAGVGERTREGNDFYHEMQESNVLDKVSLVYGQMNEPPGNRLRVALTGLTIAEKFRD 230
Query: 347 LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEK 406
G+D L+ D++ ++ A ++S LL R P V Y L E + +
Sbjct: 231 DGRDVLLFVDNIYRYTLAGTEVSALLGR------MPSAVGY-QPTLAEEMGVL------Q 277
Query: 407 KKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLS 466
++I + G++T+ + D+T P S D + L ++ PAI+ S
Sbjct: 278 ERITSTKTGSITSVQAVYVPADDLTDPSPATTFSHLDATVVLARSIAELGIYPAIDPLDS 337
Query: 467 VSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
SR G Y + + G +L +Y+EL+
Sbjct: 338 TSRQLDPLTVGEEHYNTARGVQG----VLQRYKELK 369
>sp|A9NBD0|ATPB_COXBR ATP synthase subunit beta OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=atpD PE=3 SV=1
Length = 461
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/339 (73%), Positives = 292/339 (86%), Gaps = 1/339 (0%)
Query: 574 KNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGD 633
+NN+++ +VQQQ+G+ +VRTIA G+T G+KR+ V +T KPI PVG TLGRI+NVLG+
Sbjct: 37 ENNLTL-EVQQQLGDGVVRTIAMGSTEGLKRDIAVKNTEKPIEVPVGKETLGRIMNVLGE 95
Query: 634 PIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGV 693
PID G INSK+K PIH P F Q +LETGIKV+DLLCPF KGGK+GLFGGAGV
Sbjct: 96 PIDELGPINSKEKLPIHRPAPSFIEQSGTTELLETGIKVVDLLCPFAKGGKVGLFGGAGV 155
Query: 694 GKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPS 753
GKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMKESNVLDKV+L+YGQMNEP
Sbjct: 156 GKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKESNVLDKVALVYGQMNEPP 215
Query: 754 GNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAE 813
GNRLRV LTGL++AE FR+ G+DVLLFIDNI+R+TLAG EVSA+LGR PSAVGYQPTLAE
Sbjct: 216 GNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLAGVEVSALLGRMPSAVGYQPTLAE 275
Query: 814 EMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPA 873
EMG LQERI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSRQIAE GIYPA
Sbjct: 276 EMGALQERITSTKKGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPA 335
Query: 874 IDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
IDPL+S S+QLDP I+GEEHY+VA V+ LQ+Y+ELKD
Sbjct: 336 IDPLDSTSRQLDPLIIGEEHYRVARGVQETLQRYEELKD 374
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 141/318 (44%), Gaps = 23/318 (7%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGI 245
TEK E+PVG E LGRI+N GE ID K + + + AP +++ E L TGI
Sbjct: 73 TEKPIEVPVGKETLGRIMNVLGEPIDELGPINSKEKLPIHRPAPSFIEQSGTTELLETGI 132
Query: 246 KSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVI 304
K +D + P KG + + G GKT ++ I N + ++ +G++ +
Sbjct: 133 KVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFY 192
Query: 305 NKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364
+++K N +D +V + + TG T+ E FRD G+D L+ D++ ++ A
Sbjct: 193 HEMKESNVLDKVALVYGQMNEPPGNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLA 252
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
++S LL R P V Y L E + +++I + G++T+ +
Sbjct: 253 GVEVSALLGR------MPSAVGY-QPTLAEEMGAL------QERITSTKKGSITSIQAVY 299
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T P + D + L + PAI+ S SR + G Y++
Sbjct: 300 VPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPAIDPLDSTSRQLDPLIIGEEHYRVA 359
Query: 480 KKLSGDIRIMLAQYRELE 497
+ ++ L +Y EL+
Sbjct: 360 R----GVQETLQRYEELK 373
>sp|Q83AF5|ATPB_COXBU ATP synthase subunit beta OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=atpD PE=3 SV=1
Length = 461
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/339 (73%), Positives = 292/339 (86%), Gaps = 1/339 (0%)
Query: 574 KNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGD 633
+NN+++ +VQQQ+G+ +VRTIA G+T G+KR+ V +T KPI PVG TLGRI+NVLG+
Sbjct: 37 ENNLTL-EVQQQLGDGVVRTIAMGSTEGLKRDIAVKNTEKPIEVPVGKETLGRIMNVLGE 95
Query: 634 PIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGV 693
PID G INSK+K PIH P F Q +LETGIKV+DLLCPF KGGK+GLFGGAGV
Sbjct: 96 PIDELGPINSKEKLPIHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGV 155
Query: 694 GKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPS 753
GKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMKESNVLDKV+L+YGQMNEP
Sbjct: 156 GKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKESNVLDKVALVYGQMNEPP 215
Query: 754 GNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAE 813
GNRLRV LTGL++AE FR+ G+DVLLFIDNI+R+TLAG EVSA+LGR PSAVGYQPTLAE
Sbjct: 216 GNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLAGVEVSALLGRMPSAVGYQPTLAE 275
Query: 814 EMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPA 873
EMG LQERI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSRQIAE GIYPA
Sbjct: 276 EMGALQERITSTKKGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPA 335
Query: 874 IDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
IDPL+S S+QLDP I+GEEHY+VA V+ LQ+Y+ELKD
Sbjct: 336 IDPLDSTSRQLDPLIIGEEHYRVARGVQETLQRYEELKD 374
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 141/318 (44%), Gaps = 23/318 (7%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGI 245
TEK E+PVG E LGRI+N GE ID K + + + AP +++ E L TGI
Sbjct: 73 TEKPIEVPVGKETLGRIMNVLGEPIDELGPINSKEKLPIHRPAPSFIEQSGATELLETGI 132
Query: 246 KSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVI 304
K +D + P KG + + G GKT ++ I N + ++ +G++ +
Sbjct: 133 KVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFY 192
Query: 305 NKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364
+++K N +D +V + + TG T+ E FRD G+D L+ D++ ++ A
Sbjct: 193 HEMKESNVLDKVALVYGQMNEPPGNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLA 252
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
++S LL R P V Y L E + +++I + G++T+ +
Sbjct: 253 GVEVSALLGR------MPSAVGY-QPTLAEEMGAL------QERITSTKKGSITSIQAVY 299
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T P + D + L + PAI+ S SR + G Y++
Sbjct: 300 VPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPAIDPLDSTSRQLDPLIIGEEHYRVA 359
Query: 480 KKLSGDIRIMLAQYRELE 497
+ ++ L +Y EL+
Sbjct: 360 R----GVQETLQRYEELK 373
>sp|A9KBF7|ATPB_COXBN ATP synthase subunit beta OS=Coxiella burnetii (strain Dugway
5J108-111) GN=atpD PE=3 SV=1
Length = 461
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/339 (73%), Positives = 292/339 (86%), Gaps = 1/339 (0%)
Query: 574 KNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGD 633
+NN+++ +VQQQ+G+ +VRTIA G+T G+KR+ V +T KPI PVG TLGRI+NVLG+
Sbjct: 37 ENNLTL-EVQQQLGDGVVRTIAMGSTEGLKRDIAVKNTEKPIEVPVGKETLGRIMNVLGE 95
Query: 634 PIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGV 693
PID G INSK+K PIH P F Q +LETGIKV+DLLCPF KGGK+GLFGGAGV
Sbjct: 96 PIDELGPINSKEKLPIHRPAPSFIEQSGATELLETGIKVVDLLCPFAKGGKVGLFGGAGV 155
Query: 694 GKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPS 753
GKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMKESNVLDKV+L+YGQMNEP
Sbjct: 156 GKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKESNVLDKVALVYGQMNEPP 215
Query: 754 GNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAE 813
GNRLRV LTGL++AE FR+ G+DVLLFIDNI+R+TLAG EVSA+LGR PSAVGYQPTLAE
Sbjct: 216 GNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLAGVEVSALLGRMPSAVGYQPTLAE 275
Query: 814 EMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPA 873
EMG LQERI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSRQIAE GIYPA
Sbjct: 276 EMGALQERITSTKKGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPA 335
Query: 874 IDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
IDPL+S S+QLDP I+GEEHY+VA V+ LQ+Y+ELKD
Sbjct: 336 IDPLDSTSRQLDPLIIGEEHYRVARGVQETLQRYEELKD 374
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 141/318 (44%), Gaps = 23/318 (7%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGI 245
TEK E+PVG E LGRI+N GE ID K + + + AP +++ E L TGI
Sbjct: 73 TEKPIEVPVGKETLGRIMNVLGEPIDELGPINSKEKLPIHRPAPSFIEQSGATELLETGI 132
Query: 246 KSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVI 304
K +D + P KG + + G GKT ++ I N + ++ +G++ +
Sbjct: 133 KVVDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFY 192
Query: 305 NKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364
+++K N +D +V + + TG T+ E FRD G+D L+ D++ ++ A
Sbjct: 193 HEMKESNVLDKVALVYGQMNEPPGNRLRVGLTGLTLAEAFRDEGRDVLLFIDNIFRYTLA 252
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
++S LL R P V Y L E + +++I + G++T+ +
Sbjct: 253 GVEVSALLGR------MPSAVGY-QPTLAEEMGAL------QERITSTKKGSITSIQAVY 299
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T P + D + L + PAI+ S SR + G Y++
Sbjct: 300 VPADDLTDPSPATTFAHLDATVVLSRQIAERGIYPAIDPLDSTSRQLDPLIIGEEHYRVA 359
Query: 480 KKLSGDIRIMLAQYRELE 497
+ ++ L +Y EL+
Sbjct: 360 R----GVQETLQRYEELK 373
>sp|Q60CR4|ATPB_METCA ATP synthase subunit beta OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=atpD PE=3 SV=1
Length = 460
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 244/332 (73%), Positives = 285/332 (85%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VR IA G+T+G++R V +TG PI PVG TLGRI+NVLGDPID KG
Sbjct: 40 EVQQQLGDGVVRCIAMGSTDGVRRGVTVTNTGAPISVPVGTETLGRIMNVLGDPIDEKGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I K++ IH P + +Q N +LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGEKERWGIHRKAPSYQDQAAANELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMKESNVLDKVSL+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKESNVLDKVSLVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL+IAE+FR+ G+DVLLFIDNIYR+TLAGTEVSA+LGR PSAVGYQP LAEEMG LQE
Sbjct: 220 LTGLTIAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPNLAEEMGILQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSRQIAELGIYPA+DPL+S
Sbjct: 280 RITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G EHY+ V+ LQ+YKEL+D
Sbjct: 340 SRQLDPLVIGHEHYETTRRVQSTLQRYKELRD 371
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 137/311 (44%), Gaps = 23/311 (7%)
Query: 192 IPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSM 251
+PVG E LGRI+N G+ ID K K R + + AP D+ + NE L TGIK ID +
Sbjct: 76 VPVGTETLGRIMNVLGDPIDEKGPIGEKERWGIHRKAPSYQDQAAANELLETGIKVIDLI 135
Query: 252 IPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVINKLKYY 310
P KG + + G GKT ++ I N + ++ +G++ + +++K
Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKES 195
Query: 311 NCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISL 370
N +D +V + + TG TI E FRD G+D L+ D++ ++ A ++S
Sbjct: 196 NVLDKVSLVYGQMNEPPGNRLRVALTGLTIAEKFRDEGRDVLLFIDNIYRYTLAGTEVSA 255
Query: 371 LLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDV 430
LL R P + ++ L ER I + G++T+ + D+
Sbjct: 256 LLGRMPSAVGYQPNLAEEMGILQER-------------ITSTKTGSITSIQAVYVPADDL 302
Query: 431 TSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIVKKLSGD 485
T P + D + L + PA++ S SR V G Y+ ++
Sbjct: 303 TDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRQLDPLVIGHEHYETTRR---- 358
Query: 486 IRIMLAQYREL 496
++ L +Y+EL
Sbjct: 359 VQSTLQRYKEL 369
>sp|Q9CKW1|ATPB_PASMU ATP synthase subunit beta OS=Pasteurella multocida (strain Pm70)
GN=atpD PE=3 SV=1
Length = 457
Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/356 (69%), Positives = 297/356 (83%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + +N++ + + +VQQQ+G +VR IA G+++G+KR V +T PI
Sbjct: 16 VEFPQDAVPKVYDALNVETGLVL-EVQQQLGGGVVRCIAMGSSDGLKRGLSVTNTNNPIS 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID +GEI +++ IH PP + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIMNVLGEPIDEQGEIGAEENWSIHRAPPSYEEQSNSTELLETGIKVIDLV 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDS 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSRQIA LGIYPA+DPLES S+QLDP +VGEEHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRQIASLGIYPAVDPLESTSRQLDPLVVGEEHYNVARGVQTTLQRYKELKD 370
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 142/327 (43%), Gaps = 23/327 (7%)
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
L +G T +PVG + LGRI+N GE ID + + + ++ + P ++ +
Sbjct: 60 LKRGLSVTNTNNPISVPVGTKTLGRIMNVLGEPIDEQGEIGAEENWSIHRAPPSYEEQSN 119
Query: 237 VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQ 295
E L TGIK ID + P KG + + G GKT ++ I N + ++ +G+
Sbjct: 120 STELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE 179
Query: 296 KISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIY 355
+ + +++K N +D +V + + TG T+ E FRD G+D L
Sbjct: 180 RTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFV 239
Query: 356 DDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNG 415
D++ ++ A ++S LL R P V Y L E + +++I + G
Sbjct: 240 DNIYRYTLAGTEVSALLGR------MPSAVGY-QPTLAEEMGVL------QERITSTKTG 286
Query: 416 TLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----V 470
++T+ + D+T P + D + L + + PA++ S SR V
Sbjct: 287 SITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLESTSRQLDPLV 346
Query: 471 GGAAQYKIVKKLSGDIRIMLAQYRELE 497
G Y + + ++ L +Y+EL+
Sbjct: 347 VGEEHYNVAR----GVQTTLQRYKELK 369
>sp|Q0A4M8|ATPB_ALHEH ATP synthase subunit beta OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=atpD PE=3 SV=1
Length = 458
Score = 523 bits (1347), Expect = e-147, Method: Compositional matrix adjust.
Identities = 241/332 (72%), Positives = 288/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+++G+KR+ V TGKPI PVG TLGRI++VLG+P+D KG
Sbjct: 40 EVQQQLGDGVVRTIAMGSSDGLKRSEKVSATGKPISVPVGKGTLGRIMDVLGEPVDEKGA 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
+ ++++ IH P F+ Q +LETGIKVIDLLCPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 VETEERWGIHRSAPSFAEQAGGAELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIA EH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIATEHAGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE FR+ G+D+L+FIDNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMGKLQE
Sbjct: 220 LTGLTMAEYFRDEGRDILMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD+T+VL+R IAELGIYPA+DPL+S
Sbjct: 280 RITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLARGIAELGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP +VGEEHY VA V+ LQ+YKEL+D
Sbjct: 340 SRQLDPLVVGEEHYNVARGVQGVLQRYKELRD 371
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 145/327 (44%), Gaps = 23/327 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L + +K T K +PVG LGRI++ GE +D K + R + + AP ++
Sbjct: 60 GLKRSEKVSATGKPISVPVGKGTLGRIMDVLGEPVDEKGAVETEERWGIHRSAPSFAEQA 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNV-ICIYVCIG 294
E L TGIK ID + P KG + + G GKT ++ I N ++ ++ +G
Sbjct: 120 GGAELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIATEHAGYSVFAGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ EYFRD G+D L+
Sbjct: 180 ERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDILMF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P V Y L E K+ +++I +
Sbjct: 240 IDNIYRYTLAGTEVSALLGR------MPSAVGY-QPTLAEEMGKL------QERITSTKT 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + PA++ S SR
Sbjct: 287 GSITSVQAVYVPADDLTDPSPATTFAHLDATVVLARGIAELGIYPAVDPLDSTSRQLDPL 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYREL 496
V G Y + + + G +L +Y+EL
Sbjct: 347 VVGEEHYNVARGVQG----VLQRYKEL 369
>sp|A6W3S8|ATPB2_MARMS ATP synthase subunit beta 2 OS=Marinomonas sp. (strain MWYL1)
GN=atpD2 PE=3 SV=1
Length = 458
Score = 523 bits (1347), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/359 (67%), Positives = 299/359 (83%)
Query: 554 IKQIELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGK 613
+ +E ++ K + + ++ + +VQQQ+G+ IVRTIA G+T+GIKR +V +T K
Sbjct: 13 VMDVEFPRDSVPKVYDALTIEGKQLVLEVQQQLGDGIVRTIAMGSTDGIKRGLVVENTNK 72
Query: 614 PILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVI 673
P+ PVG TLGRI++VLG+PID KG I +++ IH P ++ Q +N +LETGIKVI
Sbjct: 73 PVSVPVGTKTLGRIMDVLGNPIDEKGPIGEEERWSIHRSAPSYAEQSSSNELLETGIKVI 132
Query: 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEM 733
DL+CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEM
Sbjct: 133 DLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEM 192
Query: 734 KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTE 793
+SNV+DKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTE
Sbjct: 193 TDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTE 252
Query: 794 VSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFT 853
VSA+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF+
Sbjct: 253 VSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFS 312
Query: 854 HLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
HLD+T+VLSR IA LGIYPAIDPL+S S+QLDP ++G+EHY VA V+ LQ+YKELKD
Sbjct: 313 HLDATVVLSRDIASLGIYPAIDPLDSTSRQLDPLVIGQEHYDVARGVQMVLQRYKELKD 371
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 23/318 (7%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGI 245
T K +PVG + LGRI++ G ID K + R ++ + AP ++ S NE L TGI
Sbjct: 70 TNKPVSVPVGTKTLGRIMDVLGNPIDEKGPIGEEERWSIHRSAPSYAEQSSSNELLETGI 129
Query: 246 KSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVI 304
K ID + P KG + + G GKT ++ I N + ++ +G++ +
Sbjct: 130 KVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFY 189
Query: 305 NKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364
+++ N +D +V + + TG T+ E FRD G+D L D++ ++ A
Sbjct: 190 HEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLA 249
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
++S LL R P + L E + +++I + G++T+ +
Sbjct: 250 GTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKTGSITSVQAVY 296
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIV 479
D+T P S D + L ++ + PAI+ S SR V G Y +
Sbjct: 297 VPADDLTDPSPATTFSHLDATVVLSRDIASLGIYPAIDPLDSTSRQLDPLVIGQEHYDVA 356
Query: 480 KKLSGDIRIMLAQYRELE 497
+ ++++L +Y+EL+
Sbjct: 357 RG----VQMVLQRYKELK 370
>sp|B8GRB8|ATPB_THISH ATP synthase subunit beta OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=atpD PE=3 SV=1
Length = 459
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 239/332 (71%), Positives = 287/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T+G++R V +TG PI PVG TLGR+++VLG+P+DN G+
Sbjct: 40 EVQQQLGDGVVRTIAMGSTDGMRRGVTVANTGAPISVPVGKGTLGRVMDVLGNPVDNAGD 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
+ ++++ IH P F Q + +LETGIKVIDLLCPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 VQTEERWSIHRPAPSFDEQAGSTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE FR+ G+DVL+FIDNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEFFRDEGRDVLMFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSRQIAELGIYPA+DPL+S
Sbjct: 280 RITSTKKGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G EHY A V+ LQ+YKELKD
Sbjct: 340 SRQLDPQVIGNEHYDTARAVQNTLQRYKELKD 371
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 137/328 (41%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
+ +G T +PVG LGR+++ G +DN + R ++ + AP ++
Sbjct: 60 GMRRGVTVANTGAPISVPVGKGTLGRVMDVLGNPVDNAGDVQTEERWSIHRPAPSFDEQA 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 120 GSTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E+FRD G+D L+
Sbjct: 180 ERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEFFRDEGRDVLMF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + + KK
Sbjct: 240 IDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVLQERITSTKK------ 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + PA++ S SR
Sbjct: 287 GSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRQLDPQ 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + ++ L +Y+EL+
Sbjct: 347 VIGNEHYDTARA----VQNTLQRYKELK 370
>sp|C3K1E6|ATPB_PSEFS ATP synthase subunit beta OS=Pseudomonas fluorescens (strain SBW25)
GN=atpD PE=3 SV=1
Length = 458
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 241/332 (72%), Positives = 287/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR VVDTG I PVG TLGRI++VLG+PID G
Sbjct: 40 EVQQQLGDGVVRTIAMGSTEGLKRGLDVVDTGAAISVPVGKATLGRIMDVLGNPIDEAGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I+++++ IH P F+ Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IDTEERWGIHRPAPSFAEQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKEGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G+EHY A V++ LQ+YKELKD
Sbjct: 340 SRQLDPNVIGQEHYDTARGVQYVLQRYKELKD 371
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 140/329 (42%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G T +PVG LGRI++ G ID + R + + AP ++
Sbjct: 59 EGLKRGLDVVDTGAAISVPVGKATLGRIMDVLGNPIDEAGPIDTEERWGIHRPAPSFAEQ 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 AGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 179 GERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 FVDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
G++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 286 EGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + ++ +L +Y+EL+
Sbjct: 346 NVIGQEHYDTARG----VQYVLQRYKELK 370
>sp|Q87TT4|ATPB_PSESM ATP synthase subunit beta OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=atpD PE=3 SV=1
Length = 459
Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/332 (72%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR V D+G I PVG TLGRI++VLG+PID G
Sbjct: 41 EVQQQLGDGVVRTIAMGSTEGLKRGLEVTDSGAAISVPVGKATLGRIMDVLGNPIDEAGP 100
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I ++++ IH P F+ Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 101 IATEERWGIHRPAPSFAEQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 160
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 161 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 220
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 221 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGTLQE 280
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STKNG+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 281 RITSTKNGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 340
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G+EHY A V++ LQ+YKELKD
Sbjct: 341 SRQLDPNVIGQEHYDTARGVQYVLQRYKELKD 372
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 159/387 (41%), Gaps = 30/387 (7%)
Query: 117 IIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKN 176
II ++E+ + L +K A T L Q G A G +
Sbjct: 9 IIGAVIDVEFPRDSVPSIYNALEVKSAAGTTLEVQQQLGDGVVRTIAMG-------STEG 61
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
L +G + + +PVG LGRI++ G ID + R + + AP ++
Sbjct: 62 LKRGLEVTDSGAAISVPVGKATLGRIMDVLGNPIDEAGPIATEERWGIHRPAPSFAEQAG 121
Query: 237 VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQ 295
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +G+
Sbjct: 122 GNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE 181
Query: 296 KISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIY 355
+ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 182 RTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLLFV 241
Query: 356 DDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNG 415
D++ ++ A ++S LL R P + L E + +++I + NG
Sbjct: 242 DNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGTL------QERITSTKNG 288
Query: 416 TLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----V 470
++T+ + D+T P + D + L ++ + PA++ S SR V
Sbjct: 289 SITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPNV 348
Query: 471 GGAAQYKIVKKLSGDIRIMLAQYRELE 497
G Y + ++ +L +Y+EL+
Sbjct: 349 IGQEHYDTARG----VQYVLQRYKELK 371
>sp|Q88BX4|ATPB_PSEPK ATP synthase subunit beta OS=Pseudomonas putida (strain KT2440)
GN=atpD PE=3 SV=1
Length = 458
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/332 (72%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR VVDTG I PVG TLGRI++VLG+PID G
Sbjct: 40 EVQQQLGDGVVRTIAMGSTEGLKRGLDVVDTGAAISVPVGKATLGRIMDVLGNPIDEAGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P F++Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGEEERRGIHQPAPSFADQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIA+EH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAMEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKEGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G EHY+ A V++ LQ+YKELKD
Sbjct: 340 SRQLDPNVIGNEHYETARGVQYVLQRYKELKD 371
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 141/329 (42%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G T +PVG LGRI++ G ID + R + + AP D+
Sbjct: 59 EGLKRGLDVVDTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERRGIHQPAPSFADQ 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 AGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAMEHSGYSVFAGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 179 GERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 FVDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
G++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 286 EGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y+ + ++ +L +Y+EL+
Sbjct: 346 NVIGNEHYETARG----VQYVLQRYKELK 370
>sp|A5WBA3|ATPB_PSEP1 ATP synthase subunit beta OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=atpD PE=3 SV=1
Length = 458
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/332 (72%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR VVDTG I PVG TLGRI++VLG+PID G
Sbjct: 40 EVQQQLGDGVVRTIAMGSTEGLKRGLDVVDTGAAISVPVGKATLGRIMDVLGNPIDEAGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P F++Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGEEERRGIHQPAPSFADQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIA+EH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAMEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKEGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G EHY+ A V++ LQ+YKELKD
Sbjct: 340 SRQLDPNVIGNEHYETARGVQYVLQRYKELKD 371
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 141/329 (42%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G T +PVG LGRI++ G ID + R + + AP D+
Sbjct: 59 EGLKRGLDVVDTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERRGIHQPAPSFADQ 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 AGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAMEHSGYSVFAGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 179 GERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 FVDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
G++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 286 EGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y+ + ++ +L +Y+EL+
Sbjct: 346 NVIGNEHYETARG----VQYVLQRYKELK 370
>sp|Q4ZL24|ATPB_PSEU2 ATP synthase subunit beta OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=atpD PE=3 SV=1
Length = 459
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/332 (72%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR V D+G I PVG TLGRI++VLG+PID G
Sbjct: 41 EVQQQLGDGVVRTIAMGSTEGLKRGLEVTDSGAAISVPVGKATLGRIMDVLGNPIDEAGP 100
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I ++++ IH P F+ Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 101 IATEERWGIHRPAPSFAEQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 160
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 161 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 220
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 221 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGTLQE 280
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STKNG+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 281 RITSTKNGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 340
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G+EHY A V++ LQ+YKELKD
Sbjct: 341 SRQLDPNVIGQEHYDTARGVQYVLQRYKELKD 372
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 159/387 (41%), Gaps = 30/387 (7%)
Query: 117 IIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKN 176
II ++E+ + L ++ A T L Q G A G +
Sbjct: 9 IIGAVIDVEFPRDSVPSIYNALEVQSAAGTTLEVQQQLGDGVVRTIAMG-------STEG 61
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
L +G + + +PVG LGRI++ G ID + R + + AP ++
Sbjct: 62 LKRGLEVTDSGAAISVPVGKATLGRIMDVLGNPIDEAGPIATEERWGIHRPAPSFAEQAG 121
Query: 237 VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQ 295
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +G+
Sbjct: 122 GNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE 181
Query: 296 KISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIY 355
+ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 182 RTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLLFV 241
Query: 356 DDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNG 415
D++ ++ A ++S LL R P + L E + +++I + NG
Sbjct: 242 DNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGTL------QERITSTKNG 288
Query: 416 TLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----V 470
++T+ + D+T P + D + L ++ + PA++ S SR V
Sbjct: 289 SITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPNV 348
Query: 471 GGAAQYKIVKKLSGDIRIMLAQYRELE 497
G Y + ++ +L +Y+EL+
Sbjct: 349 IGQEHYDTARG----VQYVLQRYKELK 371
>sp|C1D5G2|ATPB_LARHH ATP synthase subunit beta OS=Laribacter hongkongensis (strain
HLHK9) GN=atpD PE=3 SV=1
Length = 458
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/356 (67%), Positives = 295/356 (82%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E +I + + + +++ +VQQQ+G+ +VR IA G+++G+KR V +TG I
Sbjct: 16 VEFPRDSIPRVYDALKVESTGLTLEVQQQLGDGVVRCIAMGSSDGLKRGLPVTNTGAAIS 75
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI++VLG PID G + ++++ PIH PKF ++ +LETGIKVIDLL
Sbjct: 76 VPVGTATLGRIMDVLGTPIDELGPVATEERMPIHRAAPKFDELSASSELLETGIKVIDLL 135
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMKES
Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFTGVGERTREGNDFYHEMKES 195
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKV+L+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVLLF+DNIYR+TLAGTEVSA
Sbjct: 196 NVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSA 255
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMGK QER++STK G+ITS+QA+YVPADDLTDPSP+TTF HLD
Sbjct: 256 LLGRMPSAVGYQPTLAEEMGKFQERVASTKTGSITSIQAVYVPADDLTDPSPATTFAHLD 315
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+T+VLSR IA LGIYPA+DPL+S S+QLDP +VG+EHY VA V+ LQKYKEL+D
Sbjct: 316 ATVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGDEHYSVARGVQMTLQKYKELRD 371
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 141/327 (43%), Gaps = 23/327 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G T +PVG LGRI++ G ID + R + + AP +
Sbjct: 60 GLKRGLPVTNTGAAISVPVGTATLGRIMDVLGTPIDELGPVATEERMPIHRAAPKFDELS 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ +E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 120 ASSELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFTGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E FRD G+D L+
Sbjct: 180 ERTREGNDFYHEMKESNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P V Y L E K ++++ +
Sbjct: 240 VDNIYRYTLAGTEVSALLGR------MPSAVGY-QPTLAEEMGKF------QERVASTKT 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 287 GSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPL 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYREL 496
V G Y + + +++ L +Y+EL
Sbjct: 347 VVGDEHYSVARG----VQMTLQKYKEL 369
>sp|A1WZT1|ATPB_HALHL ATP synthase subunit beta OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=atpD PE=3 SV=1
Length = 458
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/332 (72%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+++G+ R+ V +TG PI PVG TLGRI++VLG+P+D GE
Sbjct: 40 EVQQQLGDGVVRTIAMGSSDGLTRSEKVSNTGNPISVPVGQGTLGRIMDVLGEPVDEAGE 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
+ + ++ IH P + Q +LETGIKVIDLLCPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 VKTDERWSIHRNAPSYEEQSGGQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIA+EH G SVF GVGER+REGNDFYHEMK+SNVLDKVSL+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAVEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE FR+ G+DVL+FIDNIYR+TLAG EVSA+LGR PSAVGYQPTLAEEMGKLQE
Sbjct: 220 LTGLTMAEYFRDEGRDVLMFIDNIYRYTLAGQEVSALLGRMPSAVGYQPTLAEEMGKLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITSVQA+YVPADDLTDP+P+TTF HLD+TIVLSRQIAELGIYPA+DPL+S
Sbjct: 280 RITSTKTGSITSVQAVYVPADDLTDPAPATTFAHLDATIVLSRQIAELGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G+EHY VA V+ LQ+YKELKD
Sbjct: 340 SRQLDPLVIGQEHYDVARGVQGVLQRYKELKD 371
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 145/328 (44%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
LT+ +K T +PVG LGRI++ GE +D + R ++ + AP ++
Sbjct: 60 GLTRSEKVSNTGNPISVPVGQGTLGRIMDVLGEPVDEAGEVKTDERWSIHRNAPSYEEQS 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 120 GGQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFAGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ EYFRD G+D L+
Sbjct: 180 ERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDVLMF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A +++S LL R P + L E K+ +++I +
Sbjct: 240 IDNIYRYTLAGQEVSALLGRMPSAVGY-------QPTLAEEMGKL------QERITSTKT 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D I L + PA++ S SR
Sbjct: 287 GSITSVQAVYVPADDLTDPAPATTFAHLDATIVLSRQIAELGIYPAVDPLDSTSRQLDPL 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G +L +Y+EL+
Sbjct: 347 VIGQEHYDVARGVQG----VLQRYKELK 370
>sp|Q5WSG8|ATPB_LEGPL ATP synthase subunit beta OS=Legionella pneumophila (strain Lens)
GN=atpD PE=3 SV=1
Length = 458
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/356 (68%), Positives = 294/356 (82%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E ++ K + L ++ + +VQQQ+G+ +VRTIA G T+G+KR +TG PI
Sbjct: 16 VEFPRDSVPKVNDALKLVDSDLVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQ 75
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI++VLG P+D+ G I++++ IH P + Q + +LETGIKVIDLL
Sbjct: 76 VPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLL 135
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDS 195
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVLLFIDNIYR+TLAG EVSA
Sbjct: 196 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGVEVSA 255
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD
Sbjct: 256 LLGRMPSAVGYQPTLAEEMGMLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLD 315
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+T+VLSRQIAELGIYPA+DPL+S S+QLDP IVG+EHY A V+ LQ+YKELKD
Sbjct: 316 ATVVLSRQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYDTARRVQQTLQRYKELKD 371
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 142/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI++ G +D+ + + + AP ++
Sbjct: 60 GLKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQA 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 120 GSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E FRD G+D L+
Sbjct: 180 ERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P V Y + + + + +++I +
Sbjct: 240 IDNIYRYTLAGVEVSALLGR------MPSAVGY-------QPTLAEEMGMLQERITSTKT 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + PA++ S SR
Sbjct: 287 GSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRQLDPL 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
+ G Y ++ ++ L +Y+EL+
Sbjct: 347 IVGQEHYDTARR----VQQTLQRYKELK 370
>sp|Q5ZRA1|ATPB_LEGPH ATP synthase subunit beta OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=atpD PE=3 SV=1
Length = 458
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/356 (68%), Positives = 294/356 (82%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E ++ K + L ++ + +VQQQ+G+ +VRTIA G T+G+KR +TG PI
Sbjct: 16 VEFPRDSVPKVNDALKLVDSDLVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQ 75
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI++VLG P+D+ G I++++ IH P + Q + +LETGIKVIDLL
Sbjct: 76 VPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLL 135
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDS 195
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVLLFIDNIYR+TLAG EVSA
Sbjct: 196 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGVEVSA 255
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD
Sbjct: 256 LLGRMPSAVGYQPTLAEEMGMLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLD 315
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+T+VLSRQIAELGIYPA+DPL+S S+QLDP IVG+EHY A V+ LQ+YKELKD
Sbjct: 316 ATVVLSRQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYDTARRVQQTLQRYKELKD 371
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 142/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI++ G +D+ + + + AP ++
Sbjct: 60 GLKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQA 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 120 GSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E FRD G+D L+
Sbjct: 180 ERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P V Y + + + + +++I +
Sbjct: 240 IDNIYRYTLAGVEVSALLGR------MPSAVGY-------QPTLAEEMGMLQERITSTKT 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + PA++ S SR
Sbjct: 287 GSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRQLDPL 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
+ G Y ++ ++ L +Y+EL+
Sbjct: 347 IVGQEHYDTARR----VQQTLQRYKELK 370
>sp|A5III3|ATPB_LEGPC ATP synthase subunit beta OS=Legionella pneumophila (strain Corby)
GN=atpD PE=3 SV=1
Length = 458
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/356 (68%), Positives = 294/356 (82%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E ++ K + L ++ + +VQQQ+G+ +VRTIA G T+G+KR +TG PI
Sbjct: 16 VEFPRDSVPKVNDALKLVDSDLVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQ 75
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI++VLG P+D+ G I++++ IH P + Q + +LETGIKVIDLL
Sbjct: 76 VPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLL 135
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDS 195
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVLLFIDNIYR+TLAG EVSA
Sbjct: 196 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGVEVSA 255
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD
Sbjct: 256 LLGRMPSAVGYQPTLAEEMGMLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLD 315
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+T+VLSRQIAELGIYPA+DPL+S S+QLDP IVG+EHY A V+ LQ+YKELKD
Sbjct: 316 ATVVLSRQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYDTARRVQQTLQRYKELKD 371
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 142/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI++ G +D+ + + + AP ++
Sbjct: 60 GLKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQA 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 120 GSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E FRD G+D L+
Sbjct: 180 ERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P V Y + + + + +++I +
Sbjct: 240 IDNIYRYTLAGVEVSALLGR------MPSAVGY-------QPTLAEEMGMLQERITSTKT 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + PA++ S SR
Sbjct: 287 GSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRQLDPL 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
+ G Y ++ ++ L +Y+EL+
Sbjct: 347 IVGQEHYDTARR----VQQTLQRYKELK 370
>sp|Q5X0P3|ATPB_LEGPA ATP synthase subunit beta OS=Legionella pneumophila (strain Paris)
GN=atpD PE=3 SV=1
Length = 458
Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/356 (68%), Positives = 294/356 (82%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E ++ K + L ++ + +VQQQ+G+ +VRTIA G T+G+KR +TG PI
Sbjct: 16 VEFPRDSVPKVNDALKLVDSDLVFEVQQQLGDGVVRTIAMGTTDGLKRGLKAENTGHPIQ 75
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI++VLG P+D+ G I++++ IH P + Q + +LETGIKVIDLL
Sbjct: 76 VPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQAGSQELLETGIKVIDLL 135
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDS 195
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVLLFIDNIYR+TLAG EVSA
Sbjct: 196 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGVEVSA 255
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD
Sbjct: 256 LLGRMPSAVGYQPTLAEEMGMLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFAHLD 315
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+T+VLSRQIAELGIYPA+DPL+S S+QLDP IVG+EHY A V+ LQ+YKELKD
Sbjct: 316 ATVVLSRQIAELGIYPAVDPLDSTSRQLDPLIVGQEHYDTARRVQQTLQRYKELKD 371
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 142/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI++ G +D+ + + + AP ++
Sbjct: 60 GLKRGLKAENTGHPIQVPVGKKTLGRIMDVLGRPVDDAGPIDAEETWAIHRKAPSYEEQA 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 120 GSQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E FRD G+D L+
Sbjct: 180 ERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P V Y + + + + +++I +
Sbjct: 240 IDNIYRYTLAGVEVSALLGR------MPSAVGY-------QPTLAEEMGMLQERITSTKT 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + PA++ S SR
Sbjct: 287 GSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRQLDPL 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
+ G Y ++ ++ L +Y+EL+
Sbjct: 347 IVGQEHYDTARR----VQQTLQRYKELK 370
>sp|Q48BG5|ATPB_PSE14 ATP synthase subunit beta OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=atpD PE=3 SV=1
Length = 459
Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/332 (72%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR V D+G I PVG TLGRI++VLG+PID G
Sbjct: 41 EVQQQLGDGVVRTIAMGSTEGLKRGLEVTDSGAAISVPVGKATLGRIMDVLGNPIDEAGP 100
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I ++++ IH P F+ Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 101 IATEERWGIHRPAPSFAEQAGGNDLLETGIKVIDLVCPFTKGGKVGLFGGAGVGKTVNMM 160
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 161 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 220
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 221 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGTLQE 280
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STKNG+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 281 RITSTKNGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 340
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G+EHY A V++ LQ+YKELKD
Sbjct: 341 SRQLDPNVIGQEHYDTARGVQYVLQRYKELKD 372
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 159/387 (41%), Gaps = 30/387 (7%)
Query: 117 IIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKN 176
II ++E+ + L ++ A T L Q G A G +
Sbjct: 9 IIGAVIDVEFPRDSVPSIYNALEVQSAAGTTLEVQQQLGDGVVRTIAMG-------STEG 61
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
L +G + + +PVG LGRI++ G ID + R + + AP ++
Sbjct: 62 LKRGLEVTDSGAAISVPVGKATLGRIMDVLGNPIDEAGPIATEERWGIHRPAPSFAEQAG 121
Query: 237 VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQ 295
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +G+
Sbjct: 122 GNDLLETGIKVIDLVCPFTKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGE 181
Query: 296 KISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIY 355
+ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 182 RTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLLFV 241
Query: 356 DDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNG 415
D++ ++ A ++S LL R P + L E + +++I + NG
Sbjct: 242 DNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGTL------QERITSTKNG 288
Query: 416 TLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----V 470
++T+ + D+T P + D + L ++ + PA++ S SR V
Sbjct: 289 SITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPNV 348
Query: 471 GGAAQYKIVKKLSGDIRIMLAQYRELE 497
G Y + ++ +L +Y+EL+
Sbjct: 349 IGQEHYDTARG----VQYVLQRYKELK 371
>sp|A4VS62|ATPB_PSEU5 ATP synthase subunit beta OS=Pseudomonas stutzeri (strain A1501)
GN=atpD PE=3 SV=1
Length = 458
Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust.
Identities = 242/332 (72%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ IVRTIA G+T G+KR VV+TG I PVG TLGRI++VLG+PID G
Sbjct: 40 EVQQQLGDGIVRTIAMGSTEGLKRGLDVVNTGTGISVPVGKQTLGRIMDVLGNPIDEAGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P +S Q N +LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGEEERWTIHRAAPSYSEQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIA+EH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAMEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G+DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STKNG+ITSVQA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKNGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G+EHY A V++ LQ+YKELKD
Sbjct: 340 SRQLDPLVIGQEHYDTARGVQYVLQRYKELKD 371
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 144/329 (43%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G T +PVG + LGRI++ G ID + R T+ + AP ++
Sbjct: 59 EGLKRGLDVVNTGTGISVPVGKQTLGRIMDVLGNPIDEAGPIGEEERWTIHRAAPSYSEQ 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
NE L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 AGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAMEHSGYSVFAGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ E FRD G+D L+
Sbjct: 179 GERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 FVDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
NG++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 286 NGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + ++ +L +Y+EL+
Sbjct: 346 LVIGQEHYDTARG----VQYVLQRYKELK 370
>sp|B0KRA8|ATPB_PSEPG ATP synthase subunit beta OS=Pseudomonas putida (strain GB-1)
GN=atpD PE=3 SV=1
Length = 458
Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/332 (72%), Positives = 285/332 (85%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR VVDTG I PVG TLGRI++VLG+PID G
Sbjct: 40 EVQQQLGDGVVRTIAMGSTEGLKRGLDVVDTGAAISVPVGKATLGRIMDVLGNPIDEAGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P F++Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGEEERRGIHQPAPSFADQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIA+EH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAMEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKEGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G EHY A V++ LQ+YKELKD
Sbjct: 340 SRQLDPNVIGNEHYDTARGVQYVLQRYKELKD 371
Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 140/329 (42%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G T +PVG LGRI++ G ID + R + + AP D+
Sbjct: 59 EGLKRGLDVVDTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERRGIHQPAPSFADQ 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 AGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAMEHSGYSVFAGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 179 GERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 FVDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
G++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 286 EGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + ++ +L +Y+EL+
Sbjct: 346 NVIGNEHYDTARG----VQYVLQRYKELK 370
>sp|Q1I2I7|ATPB_PSEE4 ATP synthase subunit beta OS=Pseudomonas entomophila (strain L48)
GN=atpD PE=3 SV=1
Length = 458
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/332 (72%), Positives = 285/332 (85%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR VVDT I PVG TLGRI++VLG+PID G
Sbjct: 40 EVQQQLGDGVVRTIAMGSTEGLKRGLDVVDTKAAISVPVGKATLGRIMDVLGNPIDEAGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P F+ Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGEEERRGIHRKAPSFAEQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKEGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G EHY+ A +V++ LQ+YKELKD
Sbjct: 340 SRQLDPNVIGNEHYETARQVQYVLQRYKELKD 371
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 143/329 (43%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G T+ +PVG LGRI++ G ID + R + + AP ++
Sbjct: 59 EGLKRGLDVVDTKAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERRGIHRKAPSFAEQ 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 AGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 179 GERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 FVDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
G++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 286 EGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y+ ++ ++ +L +Y+EL+
Sbjct: 346 NVIGNEHYETARQ----VQYVLQRYKELK 370
>sp|Q0VKX4|ATPB_ALCBS ATP synthase subunit beta OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=atpD PE=3 SV=1
Length = 460
Score = 518 bits (1335), Expect = e-146, Method: Compositional matrix adjust.
Identities = 242/356 (67%), Positives = 292/356 (82%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + K + +++ + +VQQQ+G+ +VRTIA G+T G+KR V D G+PI
Sbjct: 16 VEFPREAVPKVYDALSVDGTETTLEVQQQLGDGVVRTIAMGSTEGLKRGLGVTDNGEPIQ 75
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI++VLG PID G I +++ PIH P +++Q N +LETGIKVIDL+
Sbjct: 76 VPVGTKTLGRIMDVLGRPIDEAGPIGEEERMPIHRAAPTYADQAATNELLETGIKVIDLV 135
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFAGVGERTREGNDFYHEMKDS 195
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 196 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 255
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 256 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 315
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+ LSR IA GIYPAIDPL+S S+QLDP ++G+EHY +A V+ LQ++KELKD
Sbjct: 316 STVSLSRDIASKGIYPAIDPLDSTSRQLDPLVIGQEHYDIARGVQTVLQRFKELKD 371
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 139/313 (44%), Gaps = 23/313 (7%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDS 250
++PVG + LGRI++ G ID + R + + AP D+ + NE L TGIK ID
Sbjct: 75 QVPVGTKTLGRIMDVLGRPIDEAGPIGEEERMPIHRAAPTYADQAATNELLETGIKVIDL 134
Query: 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVINKLKY 309
+ P KG + + G GKT ++ I N + ++ +G++ + +++K
Sbjct: 135 VCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFAGVGERTREGNDFYHEMKD 194
Query: 310 YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQIS 369
N +D +V + + TG T+ E FRD G+D L D++ ++ A ++S
Sbjct: 195 SNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVS 254
Query: 370 LLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGD 429
LL R P + L E + +++I + G++T+ + D
Sbjct: 255 ALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKTGSITSVQAVYVPADD 301
Query: 430 VTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIVKKLSG 484
+T P + D + L ++ + PAI+ S SR V G Y I +
Sbjct: 302 LTDPSPATTFAHLDSTVSLSRDIASKGIYPAIDPLDSTSRQLDPLVIGQEHYDIARG--- 358
Query: 485 DIRIMLAQYRELE 497
++ +L +++EL+
Sbjct: 359 -VQTVLQRFKELK 370
>sp|A4Y187|ATPB_PSEMY ATP synthase subunit beta OS=Pseudomonas mendocina (strain ymp)
GN=atpD PE=3 SV=1
Length = 458
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 239/332 (71%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR V TGK I PVG TLGRI++VLG+PID G
Sbjct: 40 EVQQQLGDGVVRTIAMGSTEGLKRGLDVNSTGKAISVPVGKATLGRIMDVLGNPIDEAGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P ++ Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGEEEQWEIHRAAPSYAEQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G+DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKKGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G+EHY+ A V++ LQ+YKELKD
Sbjct: 340 SRQLDPNVIGQEHYETARGVQYVLQRYKELKD 371
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 143/329 (43%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G T K +PVG LGRI++ G ID + + + + AP ++
Sbjct: 59 EGLKRGLDVNSTGKAISVPVGKATLGRIMDVLGNPIDEAGPIGEEEQWEIHRAAPSYAEQ 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 AGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ E FRD G+D L+
Sbjct: 179 GERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 FVDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
G++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 286 KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y+ + ++ +L +Y+EL+
Sbjct: 346 NVIGQEHYETARG----VQYVLQRYKELK 370
>sp|B1JFU1|ATPB_PSEPW ATP synthase subunit beta OS=Pseudomonas putida (strain W619)
GN=atpD PE=3 SV=1
Length = 458
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 239/332 (71%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR V+D+G I PVG TLGRI++VLG+PID G
Sbjct: 40 EVQQQLGDGVVRTIAMGSTEGLKRGLNVIDSGAAISVPVGKATLGRIMDVLGNPIDEAGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P F++Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGEEERWGIHRDAPSFADQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKEGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G EHY+ A V++ LQ+YKELKD
Sbjct: 340 SRQLDPNVIGNEHYETARGVQYVLQRYKELKD 371
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 141/329 (42%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G + +PVG LGRI++ G ID + R + + AP D+
Sbjct: 59 EGLKRGLNVIDSGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHRDAPSFADQ 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 AGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 179 GERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 FVDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
G++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 286 EGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y+ + ++ +L +Y+EL+
Sbjct: 346 NVIGNEHYETARG----VQYVLQRYKELK 370
>sp|Q0I5X3|ATPB_HAES1 ATP synthase subunit beta OS=Haemophilus somnus (strain 129Pt)
GN=atpD PE=3 SV=1
Length = 457
Score = 518 bits (1333), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/356 (68%), Positives = 296/356 (83%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + + +++ +++ +VQQQ+G +VR IA G+++G+KR V +TG PI
Sbjct: 16 VEFPQNAVPKVYDALKVESGLTL-EVQQQLGGGVVRCIALGSSDGLKRGLKVENTGNPIS 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID KGEI +++ IH P + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIMNVLGEPIDEKGEIGAEETWAIHRAAPSYEEQSNSTELLETGIKVIDLI 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEM ES
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTES 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSR IA LGIYPA+DPL+S S+QLDP +VG+EHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRNIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQGILQRYKELKD 370
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 143/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T +PVG + LGRI+N GE ID K + + + + AP ++
Sbjct: 59 GLKRGLKVENTGNPISVPVGTKTLGRIMNVLGEPIDEKGEIGAEETWAIHRAAPSYEEQS 118
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 119 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 178
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D +V + + TG T+ E FRD G+D L
Sbjct: 179 ERTREGNDFYHEMTESNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 238
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 285
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L N+ + PA++ S SR
Sbjct: 286 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDSTSRQLDPL 345
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G +L +Y+EL+
Sbjct: 346 VVGQEHYDVARGVQG----ILQRYKELK 369
>sp|A0KQX8|ATPB_AERHH ATP synthase subunit beta OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=atpD PE=3 SV=1
Length = 462
Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/332 (72%), Positives = 286/332 (86%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQIG +VR I G+++G++R VV++GK I PVG TLGRI+NVLGDPID KG
Sbjct: 44 EVQQQIGGGVVRCITMGSSDGLRRGLEVVNSGKSIQVPVGVSTLGRIMNVLGDPIDEKGP 103
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P + +Q +N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 104 IGEEERWSIHRAAPSYEDQSNSNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 163
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEM ESNVLDKVSL+YGQMNEP GNRLRVA
Sbjct: 164 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMMESNVLDKVSLVYGQMNEPPGNRLRVA 223
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 224 LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 283
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD+T+VLSRQIA LGIYPA+DPL+S
Sbjct: 284 RITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAALGIYPAVDPLDST 343
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP +VG+EHY+ A V+ LQ+YKELKD
Sbjct: 344 SRQLDPLVVGKEHYETARGVQTVLQRYKELKD 375
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 144/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G + + K ++PVG LGRI+N G+ ID K + R ++ + AP D+
Sbjct: 64 GLRRGLEVVNSGKSIQVPVGVSTLGRIMNVLGDPIDEKGPIGEEERWSIHRAAPSYEDQS 123
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 124 NSNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 183
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D +V + + TG T+ E FRD G+D L
Sbjct: 184 ERTREGNDFYHEMMESNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 243
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 244 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 290
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + PA++ S SR
Sbjct: 291 GSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIAALGIYPAVDPLDSTSRQLDPL 350
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y+ + ++ +L +Y+EL+
Sbjct: 351 VVGKEHYETARG----VQTVLQRYKELK 374
>sp|A5EXL4|ATPB_DICNV ATP synthase subunit beta OS=Dichelobacter nodosus (strain
VCS1703A) GN=atpD PE=3 SV=1
Length = 463
Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust.
Identities = 238/343 (69%), Positives = 291/343 (84%), Gaps = 1/343 (0%)
Query: 570 IINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILN 629
+++ + N++ +VQQ +G+ +VRTIA G+++G++R ++ +TG I PVG TLGRI+N
Sbjct: 30 LVSQEANVTF-EVQQLLGDGVVRTIAMGSSDGLRRGMVIENTGDAIKVPVGKATLGRIMN 88
Query: 630 VLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFG 689
VLG+P+D+ G IN++ K IH P + + +LETGIKVIDLLCPF KGGK+GLFG
Sbjct: 89 VLGEPVDHGGAINAEDKWSIHRAAPAYDELSNSTELLETGIKVIDLLCPFAKGGKVGLFG 148
Query: 690 GAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQM 749
GAGVGKTVNMMELIRNIA+EH G SVF GVGER+REGNDFY+EMKES+VLDKVSL+YGQM
Sbjct: 149 GAGVGKTVNMMELIRNIAVEHSGYSVFAGVGERTREGNDFYYEMKESDVLDKVSLVYGQM 208
Query: 750 NEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP 809
NEP+GNR RVALTGL++AE FR G+DVL F+DNIYR+TLAGTEVSA+LGR PSAVGYQP
Sbjct: 209 NEPAGNRFRVALTGLTMAEYFREEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQP 268
Query: 810 TLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELG 869
TLAEEMGKLQERI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLDST+VLSRQIAELG
Sbjct: 269 TLAEEMGKLQERIASTKKGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIAELG 328
Query: 870 IYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
IYPA+DPL+S S+QLDP +VGEEHY A V+ LQ+YKEL+D
Sbjct: 329 IYPAVDPLDSTSRQLDPLVVGEEHYSTARRVQGVLQRYKELRD 371
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 144 NNTVLSGQINGTTGYEEAAAQGFV-AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRI 202
N+ ++S + N T ++ G V + + L +G T ++PVG LGRI
Sbjct: 27 NDALVSQEANVTFEVQQLLGDGVVRTIAMGSSDGLRRGMVIENTGDAIKVPVGKATLGRI 86
Query: 203 VNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELI 262
+N GE +D+ +++ ++ + AP + + E L TGIK ID + P KG + +
Sbjct: 87 MNVLGEPVDHGGAINAEDKWSIHRAAPAYDELSNSTELLETGIKVIDLLCPFAKGGKVGL 146
Query: 263 IGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAA 321
G GKT ++ I N + ++ +G++ + ++K + +D +V
Sbjct: 147 FGGAGVGKTVNMMELIRNIAVEHSGYSVFAGVGERTREGNDFYYEMKESDVLDKVSLVYG 206
Query: 322 TAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAF 381
+ A ++ TG T+ EYFR+ G+D L D++ ++ A ++S LL R P +
Sbjct: 207 QMNEPAGNRFRVALTGLTMAEYFREEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGY 266
Query: 382 PGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISI 441
L E K+ +++I + G++T+ + D+T P +
Sbjct: 267 -------QPTLAEEMGKL------QERIASTKKGSITSIQAVYVPADDLTDPSPATTFAH 313
Query: 442 TDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIVKKLSGDIRIMLAQYREL 496
D + L + PA++ S SR V G Y +++ G +L +Y+EL
Sbjct: 314 LDSTVVLSRQIAELGIYPAVDPLDSTSRQLDPLVVGEEHYSTARRVQG----VLQRYKEL 369
>sp|A6VL57|ATPB_ACTSZ ATP synthase subunit beta OS=Actinobacillus succinogenes (strain
ATCC 55618 / 130Z) GN=atpD PE=3 SV=1
Length = 458
Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/332 (73%), Positives = 283/332 (85%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G +VR IA G ++G+KR V +TG PI PVG TLGRI+NVLG+PID KGE
Sbjct: 40 EVQQQLGGGVVRCIALGTSDGLKRGLAVKNTGNPISVPVGTKTLGRIMNVLGEPIDQKGE 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P + +Q + +LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGAEETWAIHREAPSYEDQSNSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEM ESNVLDKVSL+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIEHSGFSVFAGVGERTREGNDFYHEMTESNVLDKVSLVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLDST+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP +VG+EHY VA V+ LQ+YKELKD
Sbjct: 340 SRQLDPQVVGQEHYDVARGVQGILQRYKELKD 371
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 148/346 (42%), Gaps = 29/346 (8%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G T +PVG + LGRI+N GE ID K + + + + AP D+
Sbjct: 60 GLKRGLAVKNTGNPISVPVGTKTLGRIMNVLGEPIDQKGEIGAEETWAIHREAPSYEDQS 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 120 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFAGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D +V + + TG T+ E FRD G+D L
Sbjct: 180 ERTREGNDFYHEMTESNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 240 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L N+ + PA++ S SR
Sbjct: 287 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDSTSRQLDPQ 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE------SFSKFSSDLDIV 509
V G Y + + + G +L +Y+EL+ S + S D +V
Sbjct: 347 VVGQEHYDVARGVQG----ILQRYKELKDIIAILSMDELSEDDKLV 388
>sp|B2VCA4|ATPB_ERWT9 ATP synthase subunit beta OS=Erwinia tasmaniensis (strain DSM 17950
/ Et1/99) GN=atpD PE=3 SV=1
Length = 460
Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/358 (67%), Positives = 296/358 (82%), Gaps = 2/358 (0%)
Query: 557 IELFEINIIKYFRIINLKNNIS--INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKP 614
+E + + + + + +KN + + +VQQQ+G +VRTIA G+++G+KR VD P
Sbjct: 16 VEFPQDAVPQVYSALEVKNGDARLVLEVQQQLGGGVVRTIAMGSSDGLKRGLETVDLQHP 75
Query: 615 ILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVID 674
I PVG TLGRI+NVLG+PID KG+I +++ IH P + +Q + ++LETGIKVID
Sbjct: 76 IEVPVGTATLGRIMNVLGEPIDMKGDIGEEERWAIHRSAPSYEDQSNSQDLLETGIKVID 135
Query: 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMK 734
L+CPF KGGK+GLFGGAGVGKTVNMMELIRNIA EH G SVF GVGER+REGNDFYHEM
Sbjct: 136 LMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAAEHSGFSVFAGVGERTREGNDFYHEMT 195
Query: 735 ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEV 794
+SNV+DKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVLLFIDNIYR+TLAGTEV
Sbjct: 196 DSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEV 255
Query: 795 SAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTH 854
SA+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF H
Sbjct: 256 SALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAH 315
Query: 855 LDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
LD+T+VLSRQIA LGIYPA+DPL+S S+QLDP +VG+EHY A V+ LQ+Y+ELKD
Sbjct: 316 LDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSLLQRYQELKD 373
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 142/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G + + E+PVG LGRI+N GE ID K + R + + AP D+
Sbjct: 62 GLKRGLETVDLQHPIEVPVGTATLGRIMNVLGEPIDMKGDIGEEERWAIHRSAPSYEDQS 121
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ + L TGIK ID M P KG + + G GKT ++ I N + ++ +G
Sbjct: 122 NSQDLLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAAEHSGFSVFAGVG 181
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D +V + + TG T+ E FRD G+D L+
Sbjct: 182 ERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLF 241
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 242 IDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 288
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + + PA++ S SR
Sbjct: 289 GSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPL 348
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + ++ +L +Y+EL+
Sbjct: 349 VVGQEHYDTARG----VQSLLQRYQELK 372
>sp|B0UWG5|ATPB_HAES2 ATP synthase subunit beta OS=Haemophilus somnus (strain 2336)
GN=atpD PE=3 SV=1
Length = 457
Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/356 (68%), Positives = 296/356 (83%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + + +++ +++ +VQQQ+G +VR IA G+++G+KR V +TG PI
Sbjct: 16 VEFPQNAVPKVYDALKVESGLTL-EVQQQLGGGVVRCIALGSSDGLKRGLKVENTGNPIS 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID KGEI +++ IH P + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIMNVLGEPIDEKGEIGAEEYWAIHRAAPSYEEQSNSTELLETGIKVIDLI 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEM ES
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTES 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSR IA LGIYPA+DPL+S S+QLDP +VG+EHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRNIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQGILQRYKELKD 370
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 143/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T +PVG + LGRI+N GE ID K + + + + AP ++
Sbjct: 59 GLKRGLKVENTGNPISVPVGTKTLGRIMNVLGEPIDEKGEIGAEEYWAIHRAAPSYEEQS 118
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 119 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 178
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D +V + + TG T+ E FRD G+D L
Sbjct: 179 ERTREGNDFYHEMTESNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 238
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 285
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L N+ + PA++ S SR
Sbjct: 286 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDSTSRQLDPL 345
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G +L +Y+EL+
Sbjct: 346 VVGQEHYDVARGVQG----ILQRYKELK 369
>sp|A1AXU2|ATPB_RUTMC ATP synthase subunit beta OS=Ruthia magnifica subsp. Calyptogena
magnifica GN=atpD PE=3 SV=1
Length = 459
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/332 (73%), Positives = 280/332 (84%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G + G+KR V +TG PI PVG TLGRI+NVLG+PIDN G+
Sbjct: 40 EVQQQLGDYVVRTIAMGGSEGLKRGLKVTNTGGPIKVPVGVKTLGRIMNVLGEPIDNAGD 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I + IH P + +LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGQEVSWAIHRSAPAYHELAPAAELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMKESNVLDKVSL+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIEHSGYSVFSGVGERTREGNDFYHEMKESNVLDKVSLVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE FR+ G DVLLFIDNIYR+TLAGTEVSA+LGR PSAVGYQPTLA EMG LQE
Sbjct: 220 LTGLTMAEYFRDEGHDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGALQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSRQ+AELGIYPA+DPL+S
Sbjct: 280 RITSTKKGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQVAELGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP IVGEEHY VA V+ LQ+YKELKD
Sbjct: 340 SRQLDPLIVGEEHYNVARGVQSVLQRYKELKD 371
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G K T ++PVG + LGRI+N GE IDN + + + AP +
Sbjct: 59 EGLKRGLKVTNTGGPIKVPVGVKTLGRIMNVLGEPIDNAGDIGQEVSWAIHRSAPAYHEL 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
E L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 APAAELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFSGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ EYFRD G D L+
Sbjct: 179 GERTREGNDFYHEMKESNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRDEGHDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + + L ER I +
Sbjct: 239 FIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGALQER-------------ITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
G++T+ + D+T P + D + L + PA++ S SR
Sbjct: 286 KGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQVAELGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
+ G Y + + ++ +L +Y+EL+
Sbjct: 346 LIVGEEHYNVARG----VQSVLQRYKELK 370
>sp|B8D6S7|ATPB_BUCAT ATP synthase subunit beta OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=atpD PE=3 SV=1
Length = 465
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/363 (69%), Positives = 295/363 (81%), Gaps = 7/363 (1%)
Query: 557 IELFEINIIKYFRIINLKNNIS--INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKP 614
+E + ++ K + + +KN I +VQQQ+G +VRTIA G++NG+KR IV D G
Sbjct: 16 VEFNQDSVPKIYNALEVKNKQYKLILEVQQQLGSGVVRTIAMGSSNGLKRGLIVTDLGHY 75
Query: 615 ILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS-----PIHTLPPKFSNQIFNNNILETG 669
I PVG+ TLGRI+NVLG+ IDNKG + + + IH PP + +Q ILETG
Sbjct: 76 IKVPVGEATLGRIINVLGETIDNKGALKNNQSDKIEYWEIHRSPPSYRDQASCREILETG 135
Query: 670 IKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDF 729
IKVIDL+CPF KGGK+GLFGGAGVGKTVNMMELIRNIA+EH G SVF GVGER+REGNDF
Sbjct: 136 IKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFTGVGERTREGNDF 195
Query: 730 YHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789
YHEM +S VLDKVSL+YGQMNEP GNRLRVA TGL+IAE+FR+ GKDVLLFIDNIYR+TL
Sbjct: 196 YHEMNDSQVLDKVSLVYGQMNEPPGNRLRVAFTGLTIAEKFRDEGKDVLLFIDNIYRYTL 255
Query: 790 AGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPS 849
AGTEVSA+LGR PSAVGYQPTLAEEMG LQERI+STKNG+ITSVQA+YVPADDLTDPSP+
Sbjct: 256 AGTEVSALLGRMPSAVGYQPTLAEEMGLLQERITSTKNGSITSVQAVYVPADDLTDPSPA 315
Query: 850 TTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKE 909
TTF HLDST+ LSRQIA LGIYPAIDPL S S+QLDPYIVG+EHY+ A V+ LQ+Y+E
Sbjct: 316 TTFAHLDSTVTLSRQIASLGIYPAIDPLNSTSRQLDPYIVGDEHYETALGVQSILQRYQE 375
Query: 910 LKD 912
LKD
Sbjct: 376 LKD 378
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 23/287 (8%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRET-------VEKIAPGIMDRESVNEPLLT 243
++PVG LGRI+N GE IDNK +KN ++ + + P D+ S E L T
Sbjct: 77 KVPVGEATLGRIINVLGETIDNKGA--LKNNQSDKIEYWEIHRSPPSYRDQASCREILET 134
Query: 244 GIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLIN 302
GIK ID + P KG + + G GKT ++ I N + ++ +G++ +
Sbjct: 135 GIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFTGVGERTREGND 194
Query: 303 VINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362
+++ +D +V + + +TG TI E FRD G+D L+ D++ ++
Sbjct: 195 FYHEMNDSQVLDKVSLVYGQMNEPPGNRLRVAFTGLTIAEKFRDEGKDVLLFIDNIYRYT 254
Query: 363 WAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPI 422
A ++S LL R P + + + + L +++I + NG++T+
Sbjct: 255 LAGTEVSALLGRMPSAVGY-------------QPTLAEEMGLLQERITSTKNGSITSVQA 301
Query: 423 IETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR 469
+ D+T P + D + L + + PAI+ S SR
Sbjct: 302 VYVPADDLTDPSPATTFAHLDSTVTLSRQIASLGIYPAIDPLNSTSR 348
>sp|P57124|ATPB_BUCAI ATP synthase subunit beta OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=atpD PE=3 SV=1
Length = 465
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/363 (69%), Positives = 295/363 (81%), Gaps = 7/363 (1%)
Query: 557 IELFEINIIKYFRIINLKNNIS--INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKP 614
+E + ++ K + + +KN I +VQQQ+G +VRTIA G++NG+KR IV D G
Sbjct: 16 VEFNQDSVPKIYNALEVKNKQYKLILEVQQQLGSGVVRTIAMGSSNGLKRGLIVTDLGHY 75
Query: 615 ILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS-----PIHTLPPKFSNQIFNNNILETG 669
I PVG+ TLGRI+NVLG+ IDNKG + + + IH PP + +Q ILETG
Sbjct: 76 IKVPVGEATLGRIINVLGETIDNKGALKNNQSDKIEYWEIHRSPPSYRDQASCREILETG 135
Query: 670 IKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDF 729
IKVIDL+CPF KGGK+GLFGGAGVGKTVNMMELIRNIA+EH G SVF GVGER+REGNDF
Sbjct: 136 IKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFTGVGERTREGNDF 195
Query: 730 YHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789
YHEM +S VLDKVSL+YGQMNEP GNRLRVA TGL+IAE+FR+ GKDVLLFIDNIYR+TL
Sbjct: 196 YHEMNDSQVLDKVSLVYGQMNEPPGNRLRVAFTGLTIAEKFRDEGKDVLLFIDNIYRYTL 255
Query: 790 AGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPS 849
AGTEVSA+LGR PSAVGYQPTLAEEMG LQERI+STKNG+ITSVQA+YVPADDLTDPSP+
Sbjct: 256 AGTEVSALLGRMPSAVGYQPTLAEEMGLLQERITSTKNGSITSVQAVYVPADDLTDPSPA 315
Query: 850 TTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKE 909
TTF HLDST+ LSRQIA LGIYPAIDPL S S+QLDPYIVG+EHY+ A V+ LQ+Y+E
Sbjct: 316 TTFAHLDSTVTLSRQIASLGIYPAIDPLNSTSRQLDPYIVGDEHYETALGVQSILQRYQE 375
Query: 910 LKD 912
LKD
Sbjct: 376 LKD 378
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 23/287 (8%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRET-------VEKIAPGIMDRESVNEPLLT 243
++PVG LGRI+N GE IDNK +KN ++ + + P D+ S E L T
Sbjct: 77 KVPVGEATLGRIINVLGETIDNKGA--LKNNQSDKIEYWEIHRSPPSYRDQASCREILET 134
Query: 244 GIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLIN 302
GIK ID + P KG + + G GKT ++ I N + ++ +G++ +
Sbjct: 135 GIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFTGVGERTREGND 194
Query: 303 VINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362
+++ +D +V + + +TG TI E FRD G+D L+ D++ ++
Sbjct: 195 FYHEMNDSQVLDKVSLVYGQMNEPPGNRLRVAFTGLTIAEKFRDEGKDVLLFIDNIYRYT 254
Query: 363 WAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPI 422
A ++S LL R P + + + + L +++I + NG++T+
Sbjct: 255 LAGTEVSALLGRMPSAVGY-------------QPTLAEEMGLLQERITSTKNGSITSVQA 301
Query: 423 IETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR 469
+ D+T P + D + L + + PAI+ S SR
Sbjct: 302 VYVPADDLTDPSPATTFAHLDSTVTLSRQIASLGIYPAIDPLNSTSR 348
>sp|B8D8H3|ATPB_BUCA5 ATP synthase subunit beta OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=atpD PE=3 SV=1
Length = 465
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/363 (69%), Positives = 295/363 (81%), Gaps = 7/363 (1%)
Query: 557 IELFEINIIKYFRIINLKNNIS--INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKP 614
+E + ++ K + + +KN I +VQQQ+G +VRTIA G++NG+KR IV D G
Sbjct: 16 VEFNQDSVPKIYNALEVKNKQYKLILEVQQQLGSGVVRTIAMGSSNGLKRGLIVTDLGHY 75
Query: 615 ILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS-----PIHTLPPKFSNQIFNNNILETG 669
I PVG+ TLGRI+NVLG+ IDNKG + + + IH PP + +Q ILETG
Sbjct: 76 IKVPVGEATLGRIINVLGETIDNKGALKNNQSDKIEYWEIHRSPPSYRDQASCREILETG 135
Query: 670 IKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDF 729
IKVIDL+CPF KGGK+GLFGGAGVGKTVNMMELIRNIA+EH G SVF GVGER+REGNDF
Sbjct: 136 IKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFTGVGERTREGNDF 195
Query: 730 YHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789
YHEM +S VLDKVSL+YGQMNEP GNRLRVA TGL+IAE+FR+ GKDVLLFIDNIYR+TL
Sbjct: 196 YHEMNDSQVLDKVSLVYGQMNEPPGNRLRVAFTGLTIAEKFRDEGKDVLLFIDNIYRYTL 255
Query: 790 AGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPS 849
AGTEVSA+LGR PSAVGYQPTLAEEMG LQERI+STKNG+ITSVQA+YVPADDLTDPSP+
Sbjct: 256 AGTEVSALLGRMPSAVGYQPTLAEEMGLLQERITSTKNGSITSVQAVYVPADDLTDPSPA 315
Query: 850 TTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKE 909
TTF HLDST+ LSRQIA LGIYPAIDPL S S+QLDPYIVG+EHY+ A V+ LQ+Y+E
Sbjct: 316 TTFAHLDSTVTLSRQIASLGIYPAIDPLNSTSRQLDPYIVGDEHYETALGVQSILQRYQE 375
Query: 910 LKD 912
LKD
Sbjct: 376 LKD 378
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 23/287 (8%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRET-------VEKIAPGIMDRESVNEPLLT 243
++PVG LGRI+N GE IDNK +KN ++ + + P D+ S E L T
Sbjct: 77 KVPVGEATLGRIINVLGETIDNKGA--LKNNQSDKIEYWEIHRSPPSYRDQASCREILET 134
Query: 244 GIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLIN 302
GIK ID + P KG + + G GKT ++ I N + ++ +G++ +
Sbjct: 135 GIKVIDLICPFSKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFTGVGERTREGND 194
Query: 303 VINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362
+++ +D +V + + +TG TI E FRD G+D L+ D++ ++
Sbjct: 195 FYHEMNDSQVLDKVSLVYGQMNEPPGNRLRVAFTGLTIAEKFRDEGKDVLLFIDNIYRYT 254
Query: 363 WAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPI 422
A ++S LL R P + + + + L +++I + NG++T+
Sbjct: 255 LAGTEVSALLGRMPSAVGY-------------QPTLAEEMGLLQERITSTKNGSITSVQA 301
Query: 423 IETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR 469
+ D+T P + D + L + + PAI+ S SR
Sbjct: 302 VYVPADDLTDPSPATTFAHLDSTVTLSRQIASLGIYPAIDPLNSTSR 348
>sp|A5CVI6|ATPB_VESOH ATP synthase subunit beta OS=Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA) GN=atpD PE=3 SV=1
Length = 459
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/332 (73%), Positives = 281/332 (84%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G++IVR IA G + G+KR V +TG+PI PVG TLGRI+NVLG+PIDN GE
Sbjct: 40 EVQQQLGDHIVRAIAMGGSEGLKRGLGVTNTGEPIKVPVGVKTLGRIMNVLGEPIDNAGE 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I + IH P + +LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGQEVDWTIHRSAPDYDELAPTTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAI H G SVF GVGER+REGNDFYHEMKESNVL+KVSL+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIAHSGYSVFAGVGERTREGNDFYHEMKESNVLNKVSLVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE FR+ G+DVLLFIDNIYR+TLAGTEVSA+LGR PSAVGYQPTLA EMG LQE
Sbjct: 220 LTGLTMAEYFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGALQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSRQ+AELGIYPA+DPL+S
Sbjct: 280 RITSTKKGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQVAELGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP IVGEEHY VA V+ LQ+YKELKD
Sbjct: 340 SRQLDPLIVGEEHYNVARGVQGVLQRYKELKD 371
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 146/336 (43%), Gaps = 23/336 (6%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
A+ + + L +G T + ++PVG + LGRI+N GE IDN + + T+ +
Sbjct: 52 AIAMGGSEGLKRGLGVTNTGEPIKVPVGVKTLGRIMNVLGEPIDNAGEIGQEVDWTIHRS 111
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNV 286
AP + E L TGIK ID + P KG + + G GKT ++ I N +
Sbjct: 112 APDYDELAPTTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIAHSG 171
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD 346
++ +G++ + +++K N ++ +V + + TG T+ EYFRD
Sbjct: 172 YSVFAGVGERTREGNDFYHEMKESNVLNKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRD 231
Query: 347 LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEK 406
G+D L+ D++ ++ A ++S LL R P + + L ER
Sbjct: 232 EGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGALQER----------- 280
Query: 407 KKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLS 466
I + G++T+ + D+T P + D + L + PA++ S
Sbjct: 281 --ITSTKKGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRQVAELGIYPAVDPLDS 338
Query: 467 VSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
SR + G Y + + + G +L +Y+EL+
Sbjct: 339 TSRQLDPLIVGEEHYNVARGVQG----VLQRYKELK 370
>sp|A5UA11|ATPB_HAEIE ATP synthase subunit beta OS=Haemophilus influenzae (strain PittEE)
GN=atpD PE=3 SV=1
Length = 457
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/356 (68%), Positives = 295/356 (82%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + + +++ +++ +VQQQ+G +VR IA G ++G+KR V +T PI
Sbjct: 16 VEFPQDAVPKVYDALKVESGLTL-EVQQQLGGGVVRCIALGTSDGLKRGLKVENTNNPIQ 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID +G I +++ IH P + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSNSTELLETGIKVIDLI 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDS 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSRQIA LGIYPA+DPL+S S+QLDP +VG+EHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQGILQRYKELKD 370
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI+N GE ID + + R + + AP ++
Sbjct: 59 GLKRGLKVENTNNPIQVPVGTKTLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQS 118
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 119 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 178
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E FRD G+D L
Sbjct: 179 ERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 238
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 285
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + + PA++ S SR
Sbjct: 286 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPL 345
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G +L +Y+EL+
Sbjct: 346 VVGQEHYDVARGVQG----ILQRYKELK 369
>sp|P43715|ATPB_HAEIN ATP synthase subunit beta OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=atpD PE=3 SV=2
Length = 457
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/356 (68%), Positives = 295/356 (82%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + + +++ +++ +VQQQ+G +VR IA G ++G+KR V +T PI
Sbjct: 16 VEFPQDAVPKVYDALKVESGLTL-EVQQQLGGGVVRCIALGTSDGLKRGLKVENTNNPIQ 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID +G I +++ IH P + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSNSTELLETGIKVIDLI 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDS 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSRQIA LGIYPA+DPL+S S+QLDP +VG+EHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQGILQRYKELKD 370
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI+N GE ID + + R + + AP ++
Sbjct: 59 GLKRGLKVENTNNPIQVPVGTKTLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQS 118
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 119 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 178
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E FRD G+D L
Sbjct: 179 ERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 238
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 285
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + + PA++ S SR
Sbjct: 286 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPL 345
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G +L +Y+EL+
Sbjct: 346 VVGQEHYDVARGVQG----ILQRYKELK 369
>sp|Q4QN64|ATPB_HAEI8 ATP synthase subunit beta OS=Haemophilus influenzae (strain
86-028NP) GN=atpD PE=3 SV=1
Length = 457
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/356 (68%), Positives = 295/356 (82%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + + +++ +++ +VQQQ+G +VR IA G ++G+KR V +T PI
Sbjct: 16 VEFPQDAVPKVYDALKVESGLTL-EVQQQLGGGVVRCIALGTSDGLKRGLKVENTNNPIQ 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID +G I +++ IH P + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSNSTELLETGIKVIDLI 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDS 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSRQIA LGIYPA+DPL+S S+QLDP +VG+EHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQGILQRYKELKD 370
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI+N GE ID + + R + + AP ++
Sbjct: 59 GLKRGLKVENTNNPIQVPVGTKTLGRIMNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQS 118
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 119 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 178
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E FRD G+D L
Sbjct: 179 ERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 238
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 285
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + + PA++ S SR
Sbjct: 286 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPL 345
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G +L +Y+EL+
Sbjct: 346 VVGQEHYDVARGVQG----ILQRYKELK 369
>sp|B0BRX2|ATPB_ACTPJ ATP synthase subunit beta OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=atpD PE=3 SV=1
Length = 457
Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/356 (68%), Positives = 293/356 (82%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + + +++ +++ +VQQQ+G +VR IA G ++G+KR V +TG PI
Sbjct: 16 VEFPQDAVPKVYDALKVESGLTL-EVQQQLGGGLVRCIALGTSDGLKRGLKVENTGNPIQ 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID KG I + + IH P + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIMNVLGEPIDEKGPIGEEARWDIHRAAPSYEEQSNSTELLETGIKVIDLI 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEM +S
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDS 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSR IA LGIYPA+DPL+S S+QLDP +VGEEHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRNIASLGIYPAVDPLDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKD 370
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 143/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI+N GE ID K + R + + AP ++
Sbjct: 59 GLKRGLKVENTGNPIQVPVGTKTLGRIMNVLGEPIDEKGPIGEEARWDIHRAAPSYEEQS 118
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 119 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 178
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D +V + + TG T+ E FRD G+D L
Sbjct: 179 ERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 238
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 285
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L N+ + PA++ S SR
Sbjct: 286 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDSTSRQLDPL 345
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G L +Y+EL+
Sbjct: 346 VVGEEHYNVARGVQG----TLQRYKELK 369
>sp|Q65Q07|ATPB_MANSM ATP synthase subunit beta OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=atpD PE=3 SV=1
Length = 458
Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/356 (68%), Positives = 292/356 (82%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E E + K + + + +VQQQ+G IVR IA G+++G+KR V +TGKPI
Sbjct: 16 VEFPENAVPKVYDALKVAEGGLTLEVQQQLGGGIVRCIAMGSSDGLKRGLSVSNTGKPIS 75
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+P+D +G I ++++ IH P + Q + +LETGIKVIDL+
Sbjct: 76 VPVGTKTLGRIMNVLGEPVDEQGPIGAEEEWAIHREAPSYEEQSNSTELLETGIKVIDLI 135
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEM +S
Sbjct: 136 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFAGVGERTREGNDFYHEMTDS 195
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 196 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 255
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 256 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 315
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSR IA LGIYPA+DPL+S S+QLDP +VG+EHY VA V+ LQ+YKELKD
Sbjct: 316 STVVLSRNIASLGIYPAVDPLDSTSRQLDPQVVGQEHYDVARGVQGILQRYKELKD 371
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 143/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G T K +PVG + LGRI+N GE +D + + + + AP ++
Sbjct: 60 GLKRGLSVSNTGKPISVPVGTKTLGRIMNVLGEPVDEQGPIGAEEEWAIHREAPSYEEQS 119
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 120 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGFSVFAGVG 179
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D +V + + TG T+ E FRD G+D L
Sbjct: 180 ERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 239
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P V Y L E + +++I +
Sbjct: 240 VDNIYRYTLAGTEVSALLGR------MPSAVGY-QPTLAEEMGVL------QERITSTKT 286
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L N+ + PA++ S SR
Sbjct: 287 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDSTSRQLDPQ 346
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G +L +Y+EL+
Sbjct: 347 VVGQEHYDVARGVQG----ILQRYKELK 370
>sp|C5BF40|ATPB_EDWI9 ATP synthase subunit beta OS=Edwardsiella ictaluri (strain 93-146)
GN=atpD PE=3 SV=1
Length = 460
Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/361 (67%), Positives = 294/361 (81%), Gaps = 2/361 (0%)
Query: 554 IKQIELFEINIIKYFRIINLKNNIS--INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDT 611
+ +E + + K + + +K + + +VQQQ+G +VR IA G+++G++R V D
Sbjct: 13 VVDVEFPQDAVPKVYNALEVKGGATKLVLEVQQQLGGGVVRCIAMGSSDGLRRGLDVEDQ 72
Query: 612 GKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIK 671
PI PVG TLGRI+NVLGDP+D KGEI +++ IH P + + + +LETGIK
Sbjct: 73 NHPIEVPVGKATLGRIMNVLGDPVDMKGEIGEEERWAIHRAAPSYEDLSNSQELLETGIK 132
Query: 672 VIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYH 731
VIDL+CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYH
Sbjct: 133 VIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYH 192
Query: 732 EMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAG 791
EM +SNVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVLLFIDNIYR+TLAG
Sbjct: 193 EMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAG 252
Query: 792 TEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTT 851
TEVSA+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TT
Sbjct: 253 TEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATT 312
Query: 852 FTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELK 911
F HLD+T+VLSRQIA LGIYPA+DPL+S S+QLDP +VG+EHY A V+ LQ+Y+ELK
Sbjct: 313 FAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELK 372
Query: 912 D 912
D
Sbjct: 373 D 373
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 137/314 (43%), Gaps = 23/314 (7%)
Query: 190 FEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSID 249
E+PVG LGRI+N G+ +D K + + R + + AP D + E L TGIK ID
Sbjct: 76 IEVPVGKATLGRIMNVLGDPVDMKGEIGEEERWAIHRAAPSYEDLSNSQELLETGIKVID 135
Query: 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVINKLK 308
+ P KG + + G GKT ++ I N + ++ +G++ + +++
Sbjct: 136 LICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMT 195
Query: 309 YYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368
N +D +V + + TG T+ E FRD G+D L+ D++ ++ A ++
Sbjct: 196 DSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEV 255
Query: 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEG 428
S LL R P + L E + +++I + G++T+ +
Sbjct: 256 SALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKTGSITSVQAVYVPAD 302
Query: 429 DVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIVKKLS 483
D+T P + D + L + + PA++ S SR V G Y +
Sbjct: 303 DLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARG-- 360
Query: 484 GDIRIMLAQYRELE 497
++ +L +Y+EL+
Sbjct: 361 --VQSILQRYQELK 372
>sp|B3H2P3|ATPB_ACTP7 ATP synthase subunit beta OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=atpD PE=3 SV=1
Length = 457
Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/356 (68%), Positives = 293/356 (82%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + + +++ +++ +VQQQ+G +VR IA G ++G+KR V +TG PI
Sbjct: 16 VEFPQDAVPKVYDALKVESGLTL-EVQQQLGGGLVRCIALGTSDGLKRGLKVENTGNPIQ 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID KG I + + IH P + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIMNVLGEPIDEKGPIGEEARWDIHRAAPSYEEQSNSTELLETGIKVIDLI 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEM +S
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDS 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSR IA LGIYPA+DPL+S S+QLDP +VGEEHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRNIASLGIYPAVDPLDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKD 370
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 143/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI+N GE ID K + R + + AP ++
Sbjct: 59 GLKRGLKVENTGNPIQVPVGTKTLGRIMNVLGEPIDEKGPIGEEARWDIHRAAPSYEEQS 118
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 119 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 178
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D +V + + TG T+ E FRD G+D L
Sbjct: 179 ERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 238
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 285
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L N+ + PA++ S SR
Sbjct: 286 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDSTSRQLDPL 345
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G L +Y+EL+
Sbjct: 346 VVGEEHYNVARGVQG----TLQRYKELK 369
>sp|A3N2U4|ATPB_ACTP2 ATP synthase subunit beta OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=atpD PE=3 SV=1
Length = 457
Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/356 (68%), Positives = 293/356 (82%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + + +++ +++ +VQQQ+G +VR IA G ++G+KR V +TG PI
Sbjct: 16 VEFPQDAVPKVYDALKVESGLTL-EVQQQLGGGLVRCIALGTSDGLKRGLKVENTGNPIQ 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID KG I + + IH P + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIMNVLGEPIDEKGPIGEEARWDIHRAAPSYEEQSNSTELLETGIKVIDLI 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEM +S
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDS 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSR IA LGIYPA+DPL+S S+QLDP +VGEEHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRNIASLGIYPAVDPLDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKD 370
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 143/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRI+N GE ID K + R + + AP ++
Sbjct: 59 GLKRGLKVENTGNPIQVPVGTKTLGRIMNVLGEPIDEKGPIGEEARWDIHRAAPSYEEQS 118
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 119 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 178
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++ N +D +V + + TG T+ E FRD G+D L
Sbjct: 179 ERTREGNDFYHEMTDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 238
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 285
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L N+ + PA++ S SR
Sbjct: 286 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDPLDSTSRQLDPL 345
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G L +Y+EL+
Sbjct: 346 VVGEEHYNVARGVQG----TLQRYKELK 369
>sp|A5UGY9|ATPB_HAEIG ATP synthase subunit beta OS=Haemophilus influenzae (strain PittGG)
GN=atpD PE=3 SV=1
Length = 457
Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/356 (68%), Positives = 295/356 (82%), Gaps = 1/356 (0%)
Query: 557 IELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPIL 616
+E + + K + + +++ +++ +VQQQ+G +VR IA G ++G+KR V +T PI
Sbjct: 16 VEFPQDAVPKVYDALKVESGLTL-EVQQQLGGGVVRCIALGTSDGLKRGLKVENTNNPIQ 74
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PVG TLGRI+NVLG+PID +G I +++ IH P + Q + +LETGIKVIDL+
Sbjct: 75 VPVGTKTLGRIVNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQSNSTELLETGIKVIDLI 134
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
CPF KGGK+GLFGGAGVGKTVNMMELIRNIAIEH G SVF GVGER+REGNDFYHEMK+S
Sbjct: 135 CPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDS 194
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
NVLDKVSL+YGQMNEP GNRLRVALTGL++AE+FR+ G+DVL F+DNIYR+TLAGTEVSA
Sbjct: 195 NVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSA 254
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
+LGR PSAVGYQPTLAEEMG LQERI+STK G+ITSVQA+YVPADDLTDPSP+TTF HLD
Sbjct: 255 LLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLD 314
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
ST+VLSRQIA LGIYPA+DPL+S S+QLDP +VG+EHY VA V+ LQ+YKELKD
Sbjct: 315 STVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVARGVQGILQRYKELKD 370
Score = 100 bits (248), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 23/328 (7%)
Query: 176 NLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRE 235
L +G K T ++PVG + LGRIVN GE ID + + R + + AP ++
Sbjct: 59 GLKRGLKVENTNNPIQVPVGTKTLGRIVNVLGEPIDEQGAIGEEERWAIHRSAPSYEEQS 118
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK ID + P KG + + G GKT ++ I N + ++ +G
Sbjct: 119 NSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 178
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + +++K N +D +V + + TG T+ E FRD G+D L
Sbjct: 179 ERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFF 238
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 VDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTKT 285
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D + L + + PA++ S SR
Sbjct: 286 GSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRQIASLGIYPAVDPLDSTSRQLDPL 345
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + G +L +Y+EL+
Sbjct: 346 VVGQEHYDVARGVQG----ILQRYKELK 369
>sp|Q4K3A9|ATPB_PSEF5 ATP synthase subunit beta OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=atpD PE=1 SV=1
Length = 458
Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust.
Identities = 239/332 (71%), Positives = 284/332 (85%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+VQQQ+G+ +VRTIA G+T G+KR V +TG I PVG TLGRI++VLG+PID G
Sbjct: 40 EVQQQLGDGVVRTIAMGSTEGLKRGLDVNNTGAAISVPVGKATLGRIMDVLGNPIDEAGP 99
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
I +++ IH P F+ Q N++LETGIKVIDL+CPF KGGK+GLFGGAGVGKTVNMM
Sbjct: 100 IGEEERWGIHRPAPSFAEQAGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMM 159
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELIRNIAIEH G SVF GVGER+REGNDFYHEMK+SNVLDKV+L+YGQMNEP GNRLRVA
Sbjct: 160 ELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVA 219
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
LTGL++AE+FR+ G DVLLF+DNIYR+TLAGTEVSA+LGR PSAVGYQPTLAEEMG LQE
Sbjct: 220 LTGLTMAEKFRDEGNDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQE 279
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITS+QA+YVPADDLTDPSP+TTF HLD+T+VLSR IA LGIYPA+DPL+S
Sbjct: 280 RITSTKQGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDST 339
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+QLDP ++G EHY+ A V++ LQ+YKELKD
Sbjct: 340 SRQLDPNVIGNEHYETARGVQYVLQRYKELKD 371
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 141/329 (42%), Gaps = 23/329 (6%)
Query: 175 KNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ L +G T +PVG LGRI++ G ID + R + + AP ++
Sbjct: 59 EGLKRGLDVNNTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHRPAPSFAEQ 118
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCI 293
N+ L TGIK ID + P KG + + G GKT ++ I N + ++ +
Sbjct: 119 AGGNDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGV 178
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
G++ + +++K N +D +V + + TG T+ E FRD G D L+
Sbjct: 179 GERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGNDVLL 238
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
D++ ++ A ++S LL R P + L E + +++I +
Sbjct: 239 FVDNIYRYTLAGTEVSALLGRMPSAVGY-------QPTLAEEMGVL------QERITSTK 285
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR---- 469
G++T+ + D+T P + D + L ++ + PA++ S SR
Sbjct: 286 QGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDP 345
Query: 470 -VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y+ + ++ +L +Y+EL+
Sbjct: 346 NVIGNEHYETARG----VQYVLQRYKELK 370
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,565,119
Number of Sequences: 539616
Number of extensions: 15031556
Number of successful extensions: 56910
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3507
Number of HSP's successfully gapped in prelim test: 298
Number of HSP's that attempted gapping in prelim test: 42796
Number of HSP's gapped (non-prelim): 6670
length of query: 915
length of database: 191,569,459
effective HSP length: 127
effective length of query: 788
effective length of database: 123,038,227
effective search space: 96954122876
effective search space used: 96954122876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)