Query psy210
Match_columns 915
No_of_seqs 605 out of 4323
Neff 6.7
Searched_HMMs 46136
Date Sat Aug 17 00:16:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03324 alt_F1F0_F1_al alter 100.0 2E-106 4E-111 920.2 41.4 467 97-582 4-478 (497)
2 CHL00059 atpA ATP synthase CF1 100.0 1E-106 3E-111 917.4 38.8 442 122-582 16-457 (485)
3 COG0056 AtpA F0F1-type ATP syn 100.0 2E-106 4E-111 881.6 32.2 456 113-588 27-483 (504)
4 PRK09281 F0F1 ATP synthase sub 100.0 2E-105 4E-110 921.7 39.3 440 124-582 39-478 (502)
5 PRK13343 F0F1 ATP synthase sub 100.0 3E-105 7E-110 914.0 38.4 440 124-582 39-478 (502)
6 PRK07165 F0F1 ATP synthase sub 100.0 4E-104 8E-109 899.3 37.3 445 122-590 11-461 (507)
7 TIGR00962 atpA proton transloc 100.0 8E-104 2E-108 907.9 39.0 439 125-582 39-477 (501)
8 PTZ00185 ATPase alpha subunit; 100.0 4E-103 8E-108 881.1 39.3 448 99-565 27-491 (574)
9 COG1157 FliI Flagellar biosynt 100.0 6.3E-99 1E-103 823.6 27.4 331 579-914 61-391 (441)
10 TIGR01041 ATP_syn_B_arch ATP s 100.0 1.4E-96 3E-101 839.6 38.0 427 121-569 10-451 (458)
11 PRK04196 V-type ATP synthase s 100.0 1.8E-96 4E-101 841.6 38.0 428 122-571 13-455 (460)
12 COG1157 FliI Flagellar biosynt 100.0 1.1E-96 2E-101 806.0 31.9 391 133-544 44-438 (441)
13 CHL00060 atpB ATP synthase CF1 100.0 1.6E-93 3.4E-98 811.9 36.9 420 121-558 24-471 (494)
14 TIGR03305 alt_F1F0_F1_bet alte 100.0 2.2E-93 4.9E-98 807.9 36.5 414 123-557 10-440 (449)
15 TIGR01039 atpD ATP synthase, F 100.0 8.2E-94 1.8E-98 809.8 31.8 337 578-914 39-376 (461)
16 PRK09280 F0F1 ATP synthase sub 100.0 1.2E-93 2.5E-98 811.6 31.8 337 578-914 40-377 (463)
17 TIGR01039 atpD ATP synthase, F 100.0 5.2E-93 1.1E-97 803.2 36.5 416 122-558 11-446 (461)
18 TIGR01040 V-ATPase_V1_B V-type 100.0 3E-93 6.5E-98 801.8 34.3 421 124-567 13-458 (466)
19 TIGR03305 alt_F1F0_F1_bet alte 100.0 1.7E-93 3.7E-98 808.9 31.9 338 577-914 33-371 (449)
20 PRK09280 F0F1 ATP synthase sub 100.0 7.1E-93 1.5E-97 805.2 35.6 417 121-557 11-446 (463)
21 PRK06936 type III secretion sy 100.0 2.4E-92 5.2E-97 797.5 37.6 394 130-544 40-437 (439)
22 PRK12597 F0F1 ATP synthase sub 100.0 1.7E-92 3.7E-97 805.5 36.1 415 121-557 11-445 (461)
23 PRK08972 fliI flagellum-specif 100.0 2.9E-92 6.2E-97 794.0 35.8 394 131-544 43-439 (444)
24 PRK12597 F0F1 ATP synthase sub 100.0 5.6E-93 1.2E-97 809.4 29.9 337 578-914 39-376 (461)
25 PRK08927 fliI flagellum-specif 100.0 6.2E-92 1.4E-96 794.8 36.1 406 121-545 26-436 (442)
26 PRK02118 V-type ATP synthase s 100.0 6.8E-92 1.5E-96 790.7 34.6 409 122-566 14-427 (436)
27 CHL00060 atpB ATP synthase CF1 100.0 3E-92 6.5E-97 801.5 32.1 337 578-914 57-401 (494)
28 TIGR03324 alt_F1F0_F1_al alter 100.0 2E-90 4.3E-95 788.5 31.1 331 581-915 61-397 (497)
29 TIGR01041 ATP_syn_B_arch ATP s 100.0 2.9E-90 6.3E-95 787.8 31.3 333 582-914 40-383 (458)
30 PRK05688 fliI flagellum-specif 100.0 2.3E-89 4.9E-94 775.7 36.5 395 131-544 45-445 (451)
31 PRK04196 V-type ATP synthase s 100.0 8.1E-90 1.8E-94 786.7 32.2 332 582-914 42-385 (460)
32 PTZ00185 ATPase alpha subunit; 100.0 2.2E-89 4.8E-94 770.0 32.6 335 580-915 79-432 (574)
33 TIGR03498 FliI_clade3 flagella 100.0 4.8E-89 1E-93 772.0 35.1 404 122-544 9-417 (418)
34 CHL00059 atpA ATP synthase CF1 100.0 1.6E-89 3.4E-94 777.8 30.7 334 580-915 39-376 (485)
35 PRK06936 type III secretion sy 100.0 1.5E-89 3.2E-94 774.9 29.9 331 579-914 60-390 (439)
36 PRK06820 type III secretion sy 100.0 9.3E-89 2E-93 770.9 36.1 391 129-544 45-438 (440)
37 TIGR03496 FliI_clade1 flagella 100.0 1.1E-88 2.3E-93 769.6 34.9 401 121-541 8-411 (411)
38 PRK09099 type III secretion sy 100.0 1.9E-88 4.1E-93 769.8 36.8 393 131-544 42-438 (441)
39 TIGR01043 ATP_syn_A_arch ATP s 100.0 1E-88 2.2E-93 781.8 34.5 404 123-544 11-522 (578)
40 PRK09281 F0F1 ATP synthase sub 100.0 6.3E-89 1.4E-93 784.5 31.0 333 579-915 59-397 (502)
41 PRK13343 F0F1 ATP synthase sub 100.0 5.2E-89 1.1E-93 780.3 29.6 332 580-915 60-397 (502)
42 PRK07594 type III secretion sy 100.0 2.7E-88 5.7E-93 765.8 34.5 404 115-544 23-430 (433)
43 PRK08972 fliI flagellum-specif 100.0 2.2E-88 4.9E-93 762.5 30.5 332 578-914 59-392 (444)
44 TIGR01040 V-ATPase_V1_B V-type 100.0 2.7E-88 5.8E-93 761.7 30.6 330 582-913 40-391 (466)
45 TIGR00962 atpA proton transloc 100.0 2.6E-88 5.6E-93 779.3 29.2 331 580-914 59-395 (501)
46 PRK07165 F0F1 ATP synthase sub 100.0 7.9E-88 1.7E-92 766.0 30.4 329 580-914 36-372 (507)
47 TIGR03497 FliI_clade2 flagella 100.0 4.1E-87 8.8E-92 757.2 35.9 402 121-544 8-412 (413)
48 PRK08927 fliI flagellum-specif 100.0 1.1E-87 2.4E-92 760.1 30.9 331 579-914 55-388 (442)
49 PRK08472 fliI flagellum-specif 100.0 6.6E-87 1.4E-91 754.7 36.9 402 121-544 27-432 (434)
50 PRK08149 ATP synthase SpaL; Va 100.0 7.5E-87 1.6E-91 753.1 35.9 400 123-544 17-426 (428)
51 PRK04192 V-type ATP synthase s 100.0 4.7E-87 1E-91 769.1 33.8 402 122-543 13-524 (586)
52 TIGR01043 ATP_syn_A_arch ATP s 100.0 7.7E-88 1.7E-92 774.6 27.2 331 579-915 34-472 (578)
53 PRK07960 fliI flagellum-specif 100.0 2.5E-86 5.5E-91 747.9 34.1 395 131-544 45-452 (455)
54 TIGR01042 V-ATPase_V1_A V-type 100.0 6.3E-86 1.4E-90 754.2 33.5 402 125-544 14-527 (591)
55 PRK07196 fliI flagellum-specif 100.0 8.4E-86 1.8E-90 745.7 34.1 402 122-544 27-431 (434)
56 PRK02118 V-type ATP synthase s 100.0 2.7E-86 5.8E-91 745.4 29.5 323 578-914 38-366 (436)
57 PRK05922 type III secretion sy 100.0 2.4E-85 5.2E-90 740.8 36.4 399 122-544 29-430 (434)
58 TIGR01042 V-ATPase_V1_A V-type 100.0 1.5E-86 3.2E-91 759.4 25.1 331 579-915 35-477 (591)
59 PRK04192 V-type ATP synthase s 100.0 7.7E-86 1.7E-90 759.1 27.4 332 579-915 37-475 (586)
60 PRK09099 type III secretion sy 100.0 2.1E-85 4.6E-90 744.8 30.3 331 580-915 62-392 (441)
61 PRK05688 fliI flagellum-specif 100.0 2.2E-85 4.9E-90 743.1 30.3 332 578-914 65-398 (451)
62 PRK06820 type III secretion sy 100.0 5.8E-85 1.3E-89 740.0 30.5 329 580-914 63-391 (440)
63 cd01133 F1-ATPase_beta F1 ATP 100.0 6.5E-85 1.4E-89 698.4 27.4 273 614-886 1-274 (274)
64 TIGR02546 III_secr_ATP type II 100.0 3.2E-84 6.9E-89 738.0 34.7 393 131-544 23-420 (422)
65 PRK06002 fliI flagellum-specif 100.0 5.2E-84 1.1E-88 730.6 35.0 395 131-548 46-444 (450)
66 TIGR03498 FliI_clade3 flagella 100.0 1.2E-84 2.6E-89 736.3 29.0 329 582-914 39-370 (418)
67 TIGR03496 FliI_clade1 flagella 100.0 2.4E-84 5.2E-89 734.2 29.7 331 579-914 35-367 (411)
68 cd01135 V_A-ATPase_B V/A-type 100.0 1.6E-84 3.6E-89 693.1 25.7 270 614-883 1-276 (276)
69 PRK07594 type III secretion sy 100.0 4.1E-84 8.9E-89 731.7 29.2 328 582-914 56-383 (433)
70 TIGR03497 FliI_clade2 flagella 100.0 6.1E-84 1.3E-88 731.3 30.4 332 578-914 34-365 (413)
71 PRK07960 fliI flagellum-specif 100.0 8.4E-84 1.8E-88 727.4 29.8 331 579-914 66-405 (455)
72 PRK08149 ATP synthase SpaL; Va 100.0 1.3E-83 2.8E-88 726.8 29.7 330 580-914 46-379 (428)
73 PRK05922 type III secretion sy 100.0 2.8E-83 6E-88 724.1 30.6 328 580-914 56-383 (434)
74 PRK08472 fliI flagellum-specif 100.0 2.6E-83 5.5E-88 725.5 28.6 330 579-914 55-385 (434)
75 cd01132 F1_ATPase_alpha F1 ATP 100.0 1.5E-83 3.3E-88 686.0 24.1 273 190-471 2-274 (274)
76 TIGR01026 fliI_yscN ATPase Fli 100.0 3.1E-82 6.7E-87 722.6 36.2 401 121-544 32-438 (440)
77 cd01135 V_A-ATPase_B V/A-type 100.0 4.5E-83 9.8E-88 682.0 23.1 270 189-470 1-276 (276)
78 cd01132 F1_ATPase_alpha F1 ATP 100.0 6.9E-82 1.5E-86 673.2 25.4 267 615-883 2-273 (274)
79 COG1156 NtpB Archaeal/vacuolar 100.0 4.6E-82 1E-86 682.6 22.6 416 129-566 23-453 (463)
80 PRK06793 fliI flagellum-specif 100.0 4.8E-80 1E-84 698.5 37.8 388 131-544 39-431 (432)
81 PRK07196 fliI flagellum-specif 100.0 1.1E-80 2.3E-85 704.1 28.4 332 579-915 53-385 (434)
82 COG0055 AtpD F0F1-type ATP syn 100.0 1E-80 2.2E-85 665.6 25.3 338 577-914 40-380 (468)
83 cd01136 ATPase_flagellum-secre 100.0 2.7E-80 5.9E-85 680.2 29.2 323 189-526 1-326 (326)
84 TIGR02546 III_secr_ATP type II 100.0 2.1E-80 4.6E-85 706.6 29.4 332 579-915 41-374 (422)
85 PRK06002 fliI flagellum-specif 100.0 3.2E-80 7E-85 699.7 29.6 327 582-914 65-394 (450)
86 TIGR01026 fliI_yscN ATPase Fli 100.0 9.6E-80 2.1E-84 702.1 30.1 330 580-914 61-391 (440)
87 PRK07721 fliI flagellum-specif 100.0 3.1E-79 6.7E-84 697.6 34.2 393 131-544 36-433 (438)
88 PRK06315 type III secretion sy 100.0 2.8E-79 6.2E-84 693.9 32.4 401 122-544 33-440 (442)
89 cd01133 F1-ATPase_beta F1 ATP 100.0 7.4E-80 1.6E-84 659.4 24.2 271 189-472 1-273 (274)
90 cd01136 ATPase_flagellum-secre 100.0 2.7E-78 5.8E-83 664.5 27.1 298 614-915 1-298 (326)
91 PRK06793 fliI flagellum-specif 100.0 6.8E-78 1.5E-82 680.9 29.1 328 582-914 56-383 (432)
92 COG0056 AtpA F0F1-type ATP syn 100.0 2.9E-78 6.3E-83 660.3 22.8 340 574-915 54-397 (504)
93 KOG1351|consensus 100.0 7.5E-77 1.6E-81 615.1 22.7 423 127-571 38-484 (489)
94 PRK07721 fliI flagellum-specif 100.0 6.6E-76 1.4E-80 670.3 28.8 332 578-914 55-386 (438)
95 PRK06315 type III secretion sy 100.0 6.3E-76 1.4E-80 666.6 26.8 333 578-914 58-393 (442)
96 cd01134 V_A-ATPase_A V/A-type 100.0 3.2E-74 6.9E-79 626.7 21.8 237 643-883 119-369 (369)
97 COG0055 AtpD F0F1-type ATP syn 100.0 3E-71 6.4E-76 592.8 26.7 379 165-556 53-448 (468)
98 cd01134 V_A-ATPase_A V/A-type 100.0 2.1E-71 4.5E-76 604.6 21.3 246 216-470 117-369 (369)
99 PRK14698 V-type ATP synthase s 100.0 1.1E-70 2.3E-75 673.4 30.0 260 278-544 676-956 (1017)
100 KOG1350|consensus 100.0 1E-71 2.3E-76 582.1 16.4 337 578-914 87-430 (521)
101 PRK12608 transcription termina 100.0 1.1E-69 2.4E-74 599.6 24.7 325 565-913 30-358 (380)
102 PRK14698 V-type ATP synthase s 100.0 1.2E-69 2.6E-74 664.2 24.1 205 710-915 681-906 (1017)
103 COG1156 NtpB Archaeal/vacuolar 100.0 2E-67 4.3E-72 569.0 17.7 331 583-914 46-388 (463)
104 PF00006 ATP-synt_ab: ATP synt 100.0 8.3E-66 1.8E-70 537.5 15.9 211 668-881 1-215 (215)
105 PRK09376 rho transcription ter 100.0 1.5E-64 3.3E-69 558.3 24.9 338 545-913 51-394 (416)
106 PRK12678 transcription termina 100.0 1.3E-63 2.9E-68 565.3 24.3 321 565-913 306-641 (672)
107 PRK12608 transcription termina 100.0 4.8E-63 1E-67 546.8 23.5 319 172-526 54-377 (380)
108 KOG1350|consensus 100.0 1E-62 2.2E-67 514.7 19.1 403 131-553 72-495 (521)
109 PF00006 ATP-synt_ab: ATP synt 100.0 5.7E-63 1.2E-67 516.2 17.2 215 243-468 1-215 (215)
110 KOG1351|consensus 100.0 7.3E-63 1.6E-67 511.1 16.9 329 584-913 64-413 (489)
111 KOG1352|consensus 100.0 9.7E-64 2.1E-68 533.5 10.0 343 564-915 42-496 (618)
112 COG1155 NtpA Archaeal/vacuolar 100.0 1.7E-61 3.7E-66 536.3 12.6 332 579-915 35-474 (588)
113 KOG1352|consensus 100.0 2.4E-60 5.3E-65 507.5 13.1 403 125-542 24-544 (618)
114 TIGR00767 rho transcription te 100.0 4.1E-59 8.8E-64 518.1 21.0 338 545-913 51-393 (415)
115 COG1155 NtpA Archaeal/vacuolar 100.0 5.6E-59 1.2E-63 516.2 16.0 390 139-543 25-523 (588)
116 PRK12678 transcription termina 100.0 5.4E-58 1.2E-62 519.7 22.3 297 172-502 328-644 (672)
117 PRK09376 rho transcription ter 100.0 7.3E-57 1.6E-61 497.4 24.4 303 174-502 88-397 (416)
118 COG1158 Rho Transcription term 100.0 4.5E-54 9.7E-59 454.9 15.8 362 512-913 30-398 (422)
119 cd01128 rho_factor Transcripti 100.0 8.8E-51 1.9E-55 434.2 22.3 236 669-913 3-241 (249)
120 TIGR00767 rho transcription te 100.0 1.2E-50 2.5E-55 450.5 22.6 242 240-502 151-396 (415)
121 COG0445 GidA Flavin-dependent 100.0 7.4E-52 1.6E-56 464.3 5.7 259 42-362 258-523 (621)
122 PRK05192 tRNA uridine 5-carbox 100.0 1.1E-49 2.3E-54 466.4 0.5 257 43-361 259-517 (618)
123 cd01128 rho_factor Transcripti 100.0 1.8E-46 3.8E-51 401.0 21.1 238 245-503 4-245 (249)
124 KOG1353|consensus 100.0 6.5E-47 1.4E-51 385.9 9.7 270 163-542 61-338 (340)
125 KOG2311|consensus 100.0 2.7E-45 5.9E-50 401.8 9.8 178 54-256 300-479 (679)
126 TIGR00136 gidA glucose-inhibit 100.0 3.3E-42 7.1E-47 402.7 3.9 220 43-310 257-478 (617)
127 TIGR00137 gid_trmFO tRNA:m(5)U 100.0 1.9E-40 4.1E-45 376.8 6.6 142 58-208 224-385 (433)
128 PF01134 GIDA: Glucose inhibit 100.0 8.3E-40 1.8E-44 366.3 8.9 140 35-174 246-386 (392)
129 COG1158 Rho Transcription term 100.0 5.2E-37 1.1E-41 325.5 18.8 233 246-499 162-398 (422)
130 PRK05335 tRNA (uracil-5-)-meth 100.0 6.5E-37 1.4E-41 345.6 7.5 143 58-209 225-387 (436)
131 KOG1353|consensus 100.0 1.7E-34 3.6E-39 295.2 7.8 254 549-915 37-297 (340)
132 COG1206 Gid NAD(FAD)-utilizing 100.0 2.3E-33 4.9E-38 297.3 2.5 164 30-206 222-388 (439)
133 PRK05880 F0F1 ATP synthase sub 99.2 4.1E-12 9E-17 111.6 1.5 55 4-58 8-62 (81)
134 PRK06876 F0F1 ATP synthase sub 99.2 5.2E-12 1.1E-16 110.4 0.2 61 3-63 6-66 (78)
135 PRK13466 F0F1 ATP synthase sub 99.1 1.3E-11 2.9E-16 104.3 0.2 58 9-66 4-61 (66)
136 PRK13464 F0F1 ATP synthase sub 99.1 2.2E-11 4.7E-16 110.6 0.7 62 4-65 14-75 (101)
137 MTH00222 ATP9 ATP synthase F0 99.1 1.8E-11 3.8E-16 106.7 -0.4 57 3-60 7-63 (77)
138 PRK13467 F0F1 ATP synthase sub 99.1 2.3E-11 4.9E-16 102.7 0.2 52 10-61 5-56 (66)
139 PRK07558 F0F1 ATP synthase sub 99.0 3.7E-11 7.9E-16 104.2 0.3 58 3-61 5-62 (74)
140 PRK08482 F0F1 ATP synthase sub 99.0 3.2E-11 6.9E-16 111.1 -0.0 62 4-65 31-92 (105)
141 PRK07874 F0F1 ATP synthase sub 99.0 4.4E-11 9.6E-16 104.6 0.2 56 8-63 18-73 (80)
142 cd01120 RecA-like_NTPases RecA 99.0 1.6E-08 3.4E-13 100.0 17.2 160 685-863 2-165 (165)
143 TIGR03322 alt_F1F0_F0_C altern 99.0 9.7E-11 2.1E-15 104.4 1.2 58 4-61 9-66 (86)
144 CHL00061 atpH ATP synthase CF0 99.0 1.4E-10 3.1E-15 102.4 1.2 60 4-63 8-67 (81)
145 PRK13471 F0F1 ATP synthase sub 98.9 2E-10 4.4E-15 102.0 0.9 58 4-61 15-72 (85)
146 PRK13468 F0F1 ATP synthase sub 98.9 2.4E-10 5.2E-15 101.2 1.1 59 3-61 7-65 (82)
147 PRK09302 circadian clock prote 98.9 1.8E-07 3.8E-12 111.4 23.2 191 663-879 252-450 (509)
148 PRK07354 F0F1 ATP synthase sub 98.9 7.1E-10 1.5E-14 98.3 1.8 55 4-58 8-62 (81)
149 cd01120 RecA-like_NTPases RecA 98.9 6.2E-08 1.3E-12 95.7 15.6 160 260-450 2-165 (165)
150 PRK07159 F0F1 ATP synthase sub 98.8 7.4E-10 1.6E-14 100.9 0.5 58 4-62 31-88 (100)
151 PF00306 ATP-synt_ab_C: ATP sy 98.8 2.3E-08 5.1E-13 95.0 10.7 87 480-566 1-97 (113)
152 COG0636 AtpE F0F1-type ATP syn 98.7 2.4E-09 5.3E-14 94.6 1.0 58 4-61 8-65 (79)
153 PRK13469 F0F1 ATP synthase sub 98.7 3.5E-09 7.6E-14 93.5 1.1 54 4-58 10-63 (79)
154 TIGR01260 ATP_synt_c ATP synth 98.7 2.1E-09 4.5E-14 89.1 -1.1 44 16-59 1-44 (58)
155 TIGR02655 circ_KaiC circadian 98.6 3E-06 6.6E-11 100.2 22.5 190 662-879 241-440 (484)
156 PF06745 KaiC: KaiC; InterPro 98.0 1.8E-05 3.8E-10 84.1 8.5 179 666-864 1-186 (226)
157 PRK06251 V-type ATP synthase s 97.9 6.2E-06 1.3E-10 76.0 3.5 50 4-57 35-84 (102)
158 PF00137 ATP-synt_C: ATP synth 97.9 4.2E-06 9.2E-11 71.8 2.1 48 4-55 1-48 (66)
159 COG0467 RAD55 RecA-superfamily 97.9 0.00014 3E-09 79.2 14.3 185 664-871 3-201 (260)
160 cd01394 radB RadB. The archaea 97.9 0.00015 3.4E-09 76.4 13.6 179 666-865 1-188 (218)
161 COG0467 RAD55 RecA-superfamily 97.8 0.00017 3.6E-09 78.5 12.2 191 239-464 3-208 (260)
162 PF06745 KaiC: KaiC; InterPro 97.8 4.8E-05 1.1E-09 80.8 7.7 176 241-452 1-187 (226)
163 smart00382 AAA ATPases associa 97.7 6.8E-05 1.5E-09 71.0 6.8 145 681-862 1-145 (148)
164 PRK09302 circadian clock prote 97.6 0.00034 7.4E-09 83.5 11.7 189 237-466 251-450 (509)
165 TIGR02655 circ_KaiC circadian 97.6 0.00057 1.2E-08 81.1 12.8 190 237-466 241-440 (484)
166 PRK06067 flagellar accessory p 97.5 0.0003 6.5E-09 75.2 9.2 63 663-726 4-68 (234)
167 PRK04328 hypothetical protein; 97.5 0.0012 2.6E-08 71.6 13.6 68 664-732 3-72 (249)
168 PRK14893 V-type ATP synthase s 97.5 3.4E-05 7.3E-10 77.5 1.3 59 4-66 10-68 (161)
169 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.0021 4.6E-08 70.1 15.1 176 666-865 4-206 (259)
170 PRK08344 V-type ATP synthase s 97.5 3.7E-05 8E-10 76.9 1.1 52 4-58 89-140 (157)
171 cd01394 radB RadB. The archaea 97.4 0.00045 9.8E-09 72.9 8.8 115 241-364 1-118 (218)
172 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0012 2.7E-08 70.1 12.0 62 666-728 2-65 (229)
173 PRK09621 V-type ATP synthase s 97.4 0.00011 2.3E-09 72.3 3.2 50 4-57 78-127 (141)
174 TIGR02012 tigrfam_recA protein 97.4 0.00032 6.8E-09 78.5 7.2 110 239-363 34-147 (321)
175 PRK09361 radB DNA repair and r 97.4 0.0027 5.8E-08 67.4 14.0 56 663-719 2-59 (225)
176 PRK09354 recA recombinase A; P 97.4 0.00032 6.9E-09 79.1 7.1 111 238-363 38-152 (349)
177 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0037 7.9E-08 67.2 14.7 66 665-731 2-69 (237)
178 PRK06067 flagellar accessory p 97.3 0.00089 1.9E-08 71.6 9.9 71 238-311 4-76 (234)
179 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00091 2E-08 71.3 9.8 118 666-789 1-129 (235)
180 cd00983 recA RecA is a bacter 97.3 0.00031 6.8E-09 78.6 6.1 111 238-363 33-147 (325)
181 cd01122 GP4d_helicase GP4d_hel 97.3 0.0059 1.3E-07 66.6 16.1 69 662-730 9-78 (271)
182 TIGR02012 tigrfam_recA protein 97.3 0.00073 1.6E-08 75.6 8.7 110 664-789 34-147 (321)
183 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.00096 2.1E-08 72.7 9.3 117 241-361 4-143 (259)
184 PRK09354 recA recombinase A; P 97.2 0.00085 1.8E-08 75.7 8.4 117 663-796 38-158 (349)
185 PRK06558 V-type ATP synthase s 97.2 0.00021 4.5E-09 71.8 3.2 42 3-44 91-132 (159)
186 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0013 2.8E-08 70.6 9.6 65 241-305 3-69 (237)
187 cd00983 recA RecA is a bacter 97.2 0.00068 1.5E-08 75.9 7.6 111 663-789 33-147 (325)
188 PRK06271 V-type ATP synthase s 97.2 0.00028 6.1E-09 74.2 3.8 42 3-45 145-186 (213)
189 PRK14893 V-type ATP synthase s 97.2 0.00025 5.5E-09 71.3 3.0 51 4-58 91-141 (161)
190 PRK06271 V-type ATP synthase s 97.2 0.00027 5.9E-09 74.3 3.3 58 6-67 2-59 (213)
191 PRK04328 hypothetical protein; 97.2 0.0019 4.1E-08 70.0 9.9 67 240-306 4-72 (249)
192 TIGR03881 KaiC_arch_4 KaiC dom 97.1 0.004 8.6E-08 66.2 12.2 63 241-303 2-66 (229)
193 PRK09361 radB DNA repair and r 97.1 0.0017 3.7E-08 68.9 9.4 57 238-294 2-60 (225)
194 cd01393 recA_like RecA is a b 97.1 0.0023 5E-08 67.8 10.3 44 666-709 1-46 (226)
195 TIGR02236 recomb_radA DNA repa 97.1 0.0014 3E-08 73.3 8.6 120 665-790 76-207 (310)
196 KOG3025|consensus 97.1 6.8E-05 1.5E-09 69.1 -1.7 54 4-58 68-121 (137)
197 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0017 3.7E-08 69.1 8.7 117 241-363 1-129 (235)
198 cd01393 recA_like RecA is a b 97.0 0.0027 5.9E-08 67.2 9.5 55 241-295 1-63 (226)
199 TIGR02236 recomb_radA DNA repa 97.0 0.0021 4.7E-08 71.7 8.9 119 240-364 76-207 (310)
200 PRK08533 flagellar accessory p 97.0 0.016 3.4E-07 62.1 14.9 64 667-731 7-72 (230)
201 cd01124 KaiC KaiC is a circadi 96.9 0.015 3.2E-07 59.4 13.7 156 685-864 2-165 (187)
202 PRK08533 flagellar accessory p 96.9 0.009 1.9E-07 64.0 12.5 65 241-305 6-72 (230)
203 cd01122 GP4d_helicase GP4d_hel 96.9 0.0059 1.3E-07 66.6 11.2 68 238-305 10-79 (271)
204 PLN03187 meiotic recombination 96.9 0.0045 9.7E-08 70.1 10.4 120 664-790 106-236 (344)
205 smart00382 AAA ATPases associa 96.9 0.0031 6.7E-08 59.5 7.8 99 256-371 1-100 (148)
206 TIGR00416 sms DNA repair prote 96.9 0.0086 1.9E-07 70.5 13.0 56 664-721 74-131 (454)
207 PRK09519 recA DNA recombinatio 96.9 0.0034 7.3E-08 77.4 9.6 119 663-797 38-159 (790)
208 TIGR02237 recomb_radB DNA repa 96.8 0.0077 1.7E-07 63.0 11.0 103 679-790 9-112 (209)
209 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.022 4.7E-07 60.4 14.0 173 669-864 1-179 (224)
210 TIGR02237 recomb_radB DNA repa 96.8 0.0054 1.2E-07 64.2 9.2 102 255-364 10-112 (209)
211 TIGR00416 sms DNA repair prote 96.8 0.0079 1.7E-07 70.8 11.2 106 240-361 75-182 (454)
212 TIGR02238 recomb_DMC1 meiotic 96.7 0.0041 8.8E-08 69.7 8.4 120 238-364 75-206 (313)
213 TIGR02238 recomb_DMC1 meiotic 96.7 0.007 1.5E-07 67.8 10.2 120 664-790 76-206 (313)
214 PRK04301 radA DNA repair and r 96.7 0.0063 1.4E-07 68.3 9.6 120 664-790 82-213 (317)
215 PRK09519 recA DNA recombinatio 96.6 0.0037 8.1E-08 77.1 7.6 109 239-362 39-151 (790)
216 PRK04301 radA DNA repair and r 96.6 0.0092 2E-07 67.0 10.0 119 239-363 82-212 (317)
217 PRK11823 DNA repair protein Ra 96.5 0.023 5E-07 66.8 13.1 107 664-788 60-169 (446)
218 PLN03187 meiotic recombination 96.5 0.011 2.4E-07 67.0 9.5 120 238-364 105-236 (344)
219 PF00154 RecA: recA bacterial 96.5 0.003 6.4E-08 70.7 4.8 120 239-374 32-155 (322)
220 PRK06558 V-type ATP synthase s 96.4 0.0025 5.4E-08 64.1 3.5 42 4-45 16-57 (159)
221 cd01121 Sms Sms (bacterial rad 96.4 0.018 3.9E-07 66.1 10.6 108 239-362 62-171 (372)
222 TIGR03880 KaiC_arch_3 KaiC dom 96.2 0.043 9.3E-07 58.2 12.0 63 244-306 1-65 (224)
223 cd01121 Sms Sms (bacterial rad 96.2 0.017 3.6E-07 66.3 9.3 57 663-721 61-119 (372)
224 PTZ00035 Rad51 protein; Provis 96.2 0.014 3.1E-07 66.1 8.4 120 663-789 97-227 (337)
225 PRK11823 DNA repair protein Ra 96.1 0.02 4.3E-07 67.4 9.4 106 240-362 61-169 (446)
226 cd00009 AAA The AAA+ (ATPases 96.0 0.071 1.5E-06 50.7 11.3 27 681-707 18-44 (151)
227 PF05729 NACHT: NACHT domain 96.0 0.019 4.2E-07 56.8 7.4 87 684-789 2-95 (166)
228 cd01124 KaiC KaiC is a circadi 96.0 0.084 1.8E-06 53.8 12.3 48 260-307 2-49 (187)
229 PTZ00035 Rad51 protein; Provis 96.0 0.016 3.5E-07 65.6 7.6 119 238-363 97-227 (337)
230 PLN03186 DNA repair protein RA 95.9 0.024 5.2E-07 64.3 8.6 119 239-364 103-233 (342)
231 PF00154 RecA: recA bacterial 95.8 0.017 3.7E-07 64.7 6.8 109 663-787 31-143 (322)
232 PRK08344 V-type ATP synthase s 95.8 0.0069 1.5E-07 60.9 3.3 48 4-55 2-49 (157)
233 PLN03186 DNA repair protein RA 95.8 0.031 6.7E-07 63.4 8.7 120 664-790 103-233 (342)
234 TIGR02239 recomb_RAD51 DNA rep 95.7 0.025 5.5E-07 63.5 7.5 119 664-789 76-205 (316)
235 TIGR02239 recomb_RAD51 DNA rep 95.5 0.04 8.6E-07 61.9 8.3 118 239-363 76-205 (316)
236 PF00931 NB-ARC: NB-ARC domain 95.5 0.016 3.5E-07 63.4 5.1 96 680-788 17-114 (287)
237 PF05496 RuvB_N: Holliday junc 95.4 0.027 5.8E-07 59.8 6.2 24 684-707 52-75 (233)
238 PF13481 AAA_25: AAA domain; P 95.4 0.045 9.8E-07 56.3 7.7 54 680-733 30-92 (193)
239 COG2256 MGS1 ATPase related to 95.3 0.036 7.8E-07 62.9 7.0 76 684-796 50-125 (436)
240 KOG2028|consensus 95.3 0.047 1E-06 61.0 7.6 76 685-796 165-243 (554)
241 PRK05973 replicative DNA helic 95.2 0.088 1.9E-06 56.7 9.5 51 679-730 61-111 (237)
242 PF00004 AAA: ATPase family as 95.2 0.083 1.8E-06 50.2 8.3 110 685-838 1-111 (132)
243 PF13173 AAA_14: AAA domain 95.2 0.049 1.1E-06 52.6 6.8 26 682-707 2-27 (128)
244 PF13401 AAA_22: AAA domain; P 94.9 0.028 6.2E-07 53.7 4.2 90 683-788 5-100 (131)
245 COG0468 RecA RecA/RadA recombi 94.9 0.055 1.2E-06 59.5 6.8 113 238-365 39-157 (279)
246 PF08423 Rad51: Rad51; InterP 94.8 0.032 7E-07 60.8 4.9 123 662-791 16-149 (256)
247 cd00544 CobU Adenosylcobinamid 94.8 0.084 1.8E-06 53.9 7.5 87 260-366 2-90 (169)
248 PRK10416 signal recognition pa 94.7 0.4 8.8E-06 54.0 13.2 41 680-721 112-152 (318)
249 PRK00411 cdc6 cell division co 94.7 0.13 2.7E-06 59.3 9.4 98 680-788 53-151 (394)
250 PF13481 AAA_25: AAA domain; P 94.6 0.078 1.7E-06 54.5 6.9 67 242-308 15-93 (193)
251 PRK05973 replicative DNA helic 94.5 0.16 3.4E-06 54.8 9.0 96 253-362 60-160 (237)
252 cd03115 SRP The signal recogni 94.5 0.32 7E-06 49.2 11.0 47 685-732 3-49 (173)
253 PF05496 RuvB_N: Holliday junc 94.5 0.083 1.8E-06 56.2 6.7 70 260-370 53-122 (233)
254 cd00544 CobU Adenosylcobinamid 94.4 0.23 5E-06 50.7 9.6 88 685-793 2-91 (169)
255 cd00984 DnaB_C DnaB helicase C 94.4 0.087 1.9E-06 56.3 6.8 50 679-728 10-59 (242)
256 PRK14974 cell division protein 94.3 0.39 8.5E-06 54.4 12.1 95 680-786 138-233 (336)
257 TIGR00064 ftsY signal recognit 94.2 0.57 1.2E-05 51.6 13.0 47 680-727 70-117 (272)
258 PF08423 Rad51: Rad51; InterP 94.2 0.087 1.9E-06 57.4 6.4 120 238-364 17-148 (256)
259 PF02874 ATP-synt_ab_N: ATP sy 94.1 0.021 4.4E-07 49.1 1.1 37 576-612 33-69 (69)
260 COG1124 DppF ABC-type dipeptid 94.1 0.033 7.2E-07 59.4 2.8 30 677-706 28-57 (252)
261 PF13401 AAA_22: AAA domain; P 94.1 0.18 3.9E-06 48.2 7.8 89 257-361 4-99 (131)
262 PF01637 Arch_ATPase: Archaeal 94.1 0.028 6.2E-07 58.8 2.4 102 680-788 18-131 (234)
263 PF13173 AAA_14: AAA domain 94.1 0.15 3.2E-06 49.3 7.1 83 258-375 3-87 (128)
264 COG1116 TauB ABC-type nitrate/ 94.1 0.034 7.3E-07 59.7 2.8 35 670-704 16-51 (248)
265 PF00308 Bac_DnaA: Bacterial d 94.0 0.29 6.3E-06 52.1 9.6 36 682-717 34-70 (219)
266 COG0468 RecA RecA/RadA recombi 94.0 0.085 1.8E-06 58.1 5.7 114 662-791 38-157 (279)
267 COG2256 MGS1 ATPase related to 93.9 0.16 3.5E-06 57.8 7.8 75 258-368 49-123 (436)
268 PF04665 Pox_A32: Poxvirus A32 93.9 0.19 4.1E-06 54.2 8.0 41 684-726 15-55 (241)
269 TIGR02928 orc1/cdc6 family rep 93.8 0.22 4.8E-06 56.6 8.9 100 680-788 38-142 (365)
270 PRK08181 transposase; Validate 93.7 0.14 2.9E-06 56.4 6.8 47 680-734 104-150 (269)
271 cd00009 AAA The AAA+ (ATPases 93.7 0.29 6.3E-06 46.4 8.4 38 257-295 19-57 (151)
272 PRK09183 transposase/IS protei 93.7 0.19 4.1E-06 54.9 7.8 29 679-707 99-127 (259)
273 PF00448 SRP54: SRP54-type pro 93.6 0.76 1.6E-05 48.1 11.9 90 684-784 3-92 (196)
274 TIGR00959 ffh signal recogniti 93.5 0.8 1.7E-05 53.6 13.0 94 684-787 101-194 (428)
275 cd03222 ABC_RNaseL_inhibitor T 93.5 0.058 1.3E-06 55.5 3.2 37 671-707 14-50 (177)
276 COG1484 DnaC DNA replication p 93.4 0.18 4E-06 54.9 7.1 47 681-735 104-150 (254)
277 COG4619 ABC-type uncharacteriz 93.3 0.056 1.2E-06 54.7 2.6 30 677-706 24-53 (223)
278 PRK10867 signal recognition pa 93.2 0.9 1.9E-05 53.3 12.7 95 683-787 101-195 (433)
279 PF01637 Arch_ATPase: Archaeal 93.1 0.048 1E-06 57.0 2.0 101 255-362 18-131 (234)
280 PF00931 NB-ARC: NB-ARC domain 93.1 0.18 4E-06 55.0 6.6 91 256-362 18-114 (287)
281 cd00820 PEPCK_HprK Phosphoenol 93.0 0.064 1.4E-06 50.6 2.5 28 676-703 9-36 (107)
282 PRK12377 putative replication 93.0 0.28 6E-06 53.3 7.7 26 683-708 102-127 (248)
283 PRK14722 flhF flagellar biosyn 93.0 0.45 9.8E-06 54.6 9.7 42 666-707 120-162 (374)
284 PF13671 AAA_33: AAA domain; P 93.0 0.8 1.7E-05 44.4 10.3 22 685-706 2-23 (143)
285 TIGR00750 lao LAO/AO transport 93.0 0.47 1E-05 52.9 9.6 32 678-709 30-61 (300)
286 PF07088 GvpD: GvpD gas vesicl 92.9 0.62 1.3E-05 53.1 10.3 111 676-791 4-122 (484)
287 PRK13342 recombination factor 92.9 0.28 6E-06 57.2 8.0 25 682-706 36-60 (413)
288 PRK05800 cobU adenosylcobinami 92.9 0.12 2.7E-06 52.7 4.5 89 684-792 3-93 (170)
289 TIGR00665 DnaB replicative DNA 92.9 0.28 6E-06 57.5 8.1 63 239-301 176-240 (434)
290 COG1474 CDC6 Cdc6-related prot 92.8 0.4 8.6E-06 55.1 9.0 97 676-788 33-136 (366)
291 PRK05800 cobU adenosylcobinami 92.8 0.18 3.9E-06 51.5 5.7 89 259-365 3-92 (170)
292 cd01125 repA Hexameric Replica 92.8 0.6 1.3E-05 50.1 10.0 43 682-724 1-53 (239)
293 COG3638 ABC-type phosphate/pho 92.8 0.095 2.1E-06 55.8 3.6 66 668-733 15-83 (258)
294 PF05729 NACHT: NACHT domain 92.8 0.36 7.7E-06 47.7 7.6 88 259-366 2-98 (166)
295 PF03796 DnaB_C: DnaB-like hel 92.7 0.1 2.2E-06 56.7 3.9 55 666-721 2-57 (259)
296 PRK12724 flagellar biosynthesi 92.7 0.35 7.6E-06 56.2 8.3 41 681-721 222-262 (432)
297 PF07088 GvpD: GvpD gas vesicl 92.7 0.58 1.3E-05 53.3 9.6 109 250-363 3-120 (484)
298 PRK05541 adenylylsulfate kinas 92.6 0.71 1.5E-05 46.9 9.7 31 678-708 3-33 (176)
299 cd03282 ABC_MSH4_euk MutS4 hom 92.6 1 2.2E-05 47.5 11.1 35 671-705 18-52 (204)
300 cd03254 ABCC_Glucan_exporter_l 92.6 0.078 1.7E-06 56.3 2.7 31 676-706 23-53 (229)
301 PF01583 APS_kinase: Adenylyls 92.5 0.34 7.4E-06 48.9 7.0 90 681-790 1-90 (156)
302 COG3842 PotA ABC-type spermidi 92.5 0.081 1.8E-06 60.0 2.8 36 669-704 17-53 (352)
303 TIGR00665 DnaB replicative DNA 92.5 0.13 2.9E-06 60.2 4.7 62 665-726 177-239 (434)
304 TIGR01166 cbiO cobalt transpor 92.5 0.086 1.9E-06 54.4 2.7 30 677-706 13-42 (190)
305 cd03260 ABC_PstB_phosphate_tra 92.4 0.11 2.3E-06 55.2 3.5 31 676-706 20-50 (227)
306 COG1066 Sms Predicted ATP-depe 92.3 0.28 6.1E-06 56.1 6.7 105 240-361 74-180 (456)
307 TIGR02881 spore_V_K stage V sp 92.3 0.86 1.9E-05 49.6 10.5 30 678-707 38-67 (261)
308 cd03287 ABC_MSH3_euk MutS3 hom 92.3 0.69 1.5E-05 49.4 9.4 37 670-706 19-55 (222)
309 COG1066 Sms Predicted ATP-depe 92.3 0.28 6E-06 56.1 6.6 54 665-721 74-129 (456)
310 cd03229 ABC_Class3 This class 92.3 0.099 2.1E-06 53.5 2.9 31 676-706 20-50 (178)
311 PRK06921 hypothetical protein; 92.3 0.5 1.1E-05 51.9 8.5 46 672-717 105-152 (266)
312 PRK09621 V-type ATP synthase s 92.2 0.17 3.7E-06 50.0 4.3 45 1-45 1-45 (141)
313 PF13191 AAA_16: AAA ATPase do 92.2 0.43 9.4E-06 48.2 7.6 46 676-722 18-63 (185)
314 COG1116 TauB ABC-type nitrate/ 92.2 0.1 2.2E-06 56.1 3.0 29 252-281 24-52 (248)
315 PRK13540 cytochrome c biogenes 92.2 0.1 2.2E-06 54.4 2.9 32 674-705 19-50 (200)
316 TIGR02211 LolD_lipo_ex lipopro 92.2 0.099 2.1E-06 55.2 2.9 32 675-706 24-55 (221)
317 PF13479 AAA_24: AAA domain 92.2 0.38 8.3E-06 50.8 7.3 22 681-702 2-23 (213)
318 cd03269 ABC_putative_ATPase Th 92.1 0.1 2.2E-06 54.6 2.9 32 675-706 19-50 (210)
319 cd03292 ABC_FtsE_transporter F 92.1 0.1 2.2E-06 54.7 2.9 33 674-706 19-51 (214)
320 PRK06893 DNA replication initi 92.1 0.55 1.2E-05 50.2 8.4 32 685-717 42-73 (229)
321 TIGR03608 L_ocin_972_ABC putat 92.0 0.1 2.2E-06 54.4 2.7 33 674-706 16-48 (206)
322 cd03238 ABC_UvrA The excision 92.0 0.1 2.2E-06 53.7 2.7 27 677-703 16-42 (176)
323 PRK08727 hypothetical protein; 92.0 1.5 3.3E-05 47.0 11.8 93 683-782 42-134 (233)
324 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.0 0.11 2.3E-06 54.8 2.9 30 677-706 25-54 (218)
325 cd03225 ABC_cobalt_CbiO_domain 92.0 0.1 2.2E-06 54.6 2.7 31 676-706 21-51 (211)
326 PF00005 ABC_tran: ABC transpo 92.0 0.096 2.1E-06 50.7 2.3 30 677-706 6-35 (137)
327 COG1703 ArgK Putative periplas 92.0 0.87 1.9E-05 50.3 9.7 39 679-717 48-86 (323)
328 TIGR00960 3a0501s02 Type II (G 92.0 0.11 2.3E-06 54.8 2.8 32 675-706 22-53 (216)
329 cd01125 repA Hexameric Replica 92.0 0.89 1.9E-05 48.8 9.9 50 257-306 1-62 (239)
330 PF13207 AAA_17: AAA domain; P 91.9 0.12 2.6E-06 48.8 2.9 23 684-706 1-23 (121)
331 PRK04296 thymidine kinase; Pro 91.9 0.63 1.4E-05 48.3 8.5 35 257-291 2-36 (190)
332 TIGR02315 ABC_phnC phosphonate 91.9 0.11 2.3E-06 55.8 2.8 31 676-706 22-52 (243)
333 cd03250 ABCC_MRP_domain1 Domai 91.9 0.12 2.5E-06 54.1 2.9 40 674-713 23-62 (204)
334 cd03224 ABC_TM1139_LivF_branch 91.9 0.11 2.3E-06 54.9 2.7 30 677-706 21-50 (222)
335 PRK11124 artP arginine transpo 91.8 0.11 2.5E-06 55.6 2.9 31 675-705 21-51 (242)
336 COG0194 Gmk Guanylate kinase [ 91.8 0.49 1.1E-05 48.9 7.2 86 681-782 3-101 (191)
337 PF04665 Pox_A32: Poxvirus A32 91.8 0.34 7.4E-06 52.3 6.4 43 259-302 15-57 (241)
338 COG0563 Adk Adenylate kinase a 91.8 0.17 3.8E-06 52.1 4.1 93 684-795 2-97 (178)
339 TIGR03410 urea_trans_UrtE urea 91.8 0.11 2.4E-06 55.2 2.7 33 674-706 18-50 (230)
340 cd03265 ABC_DrrA DrrA is the A 91.8 0.11 2.5E-06 54.7 2.8 33 674-706 18-50 (220)
341 cd03258 ABC_MetN_methionine_tr 91.8 0.11 2.4E-06 55.3 2.7 31 677-707 26-56 (233)
342 cd02027 APSK Adenosine 5'-phos 91.7 0.93 2E-05 45.1 9.1 23 685-707 2-24 (149)
343 cd03236 ABC_RNaseL_inhibitor_d 91.7 0.12 2.5E-06 56.4 2.8 36 672-707 16-51 (255)
344 cd03262 ABC_HisP_GlnQ_permease 91.7 0.12 2.6E-06 54.2 2.8 30 677-706 21-50 (213)
345 PRK00411 cdc6 cell division co 91.7 0.99 2.1E-05 51.9 10.6 92 256-362 54-151 (394)
346 cd03296 ABC_CysA_sulfate_impor 91.7 0.12 2.6E-06 55.4 2.9 33 674-706 20-52 (239)
347 cd03256 ABC_PhnC_transporter A 91.7 0.12 2.5E-06 55.3 2.8 30 677-706 22-51 (241)
348 cd03266 ABC_NatA_sodium_export 91.7 0.11 2.5E-06 54.6 2.6 31 676-706 25-55 (218)
349 cd03226 ABC_cobalt_CbiO_domain 91.7 0.12 2.7E-06 53.9 2.8 30 677-706 21-50 (205)
350 cd03261 ABC_Org_Solvent_Resist 91.6 0.12 2.7E-06 55.0 2.9 33 674-706 18-50 (235)
351 cd03298 ABC_ThiQ_thiamine_tran 91.6 0.14 3E-06 53.8 3.1 33 674-706 16-48 (211)
352 cd03219 ABC_Mj1267_LivG_branch 91.6 0.11 2.4E-06 55.4 2.5 30 677-706 21-50 (236)
353 PRK14087 dnaA chromosomal repl 91.6 0.49 1.1E-05 55.8 8.0 35 683-717 142-177 (450)
354 PRK13539 cytochrome c biogenes 91.6 0.12 2.7E-06 54.1 2.8 31 676-706 22-52 (207)
355 PRK08118 topology modulation p 91.6 0.13 2.9E-06 52.2 2.9 25 683-707 2-26 (167)
356 PRK14247 phosphate ABC transpo 91.5 0.12 2.7E-06 55.6 2.8 33 674-706 21-53 (250)
357 TIGR03864 PQQ_ABC_ATP ABC tran 91.5 0.13 2.8E-06 55.0 2.9 30 676-705 21-50 (236)
358 PRK03846 adenylylsulfate kinas 91.5 0.79 1.7E-05 47.7 8.7 28 681-708 23-50 (198)
359 PRK04296 thymidine kinase; Pro 91.5 0.92 2E-05 47.1 9.1 28 682-709 2-29 (190)
360 COG1120 FepC ABC-type cobalami 91.5 0.13 2.8E-06 55.9 2.9 34 674-707 20-53 (258)
361 cd03247 ABCC_cytochrome_bd The 91.5 0.14 2.9E-06 52.4 2.9 34 674-707 20-53 (178)
362 PRK09435 membrane ATPase/prote 91.5 0.95 2.1E-05 51.3 9.8 98 679-780 53-154 (332)
363 PRK11701 phnK phosphonate C-P 91.5 0.12 2.7E-06 56.0 2.7 33 674-706 24-56 (258)
364 cd03246 ABCC_Protease_Secretio 91.5 0.16 3.5E-06 51.7 3.4 31 676-706 22-52 (173)
365 PRK13541 cytochrome c biogenes 91.5 0.15 3.2E-06 53.0 3.2 36 672-707 16-51 (195)
366 KOG0727|consensus 91.5 0.22 4.7E-06 53.3 4.3 62 682-748 189-256 (408)
367 cd03216 ABC_Carb_Monos_I This 91.5 0.14 3E-06 51.7 2.9 30 677-706 21-50 (163)
368 cd03257 ABC_NikE_OppD_transpor 91.4 0.13 2.7E-06 54.5 2.7 31 676-706 25-55 (228)
369 cd03259 ABC_Carb_Solutes_like 91.4 0.13 2.8E-06 54.0 2.8 30 677-706 21-50 (213)
370 PRK14274 phosphate ABC transpo 91.4 0.13 2.9E-06 55.7 2.9 33 674-706 30-62 (259)
371 cd03223 ABCD_peroxisomal_ALDP 91.4 0.14 3E-06 51.9 2.8 34 674-707 19-52 (166)
372 cd03235 ABC_Metallic_Cations A 91.4 0.12 2.7E-06 54.2 2.5 30 677-706 20-49 (213)
373 COG1126 GlnQ ABC-type polar am 91.4 0.13 2.9E-06 54.1 2.7 27 677-703 23-49 (240)
374 TIGR03263 guanyl_kin guanylate 91.4 0.31 6.7E-06 49.5 5.4 24 682-705 1-24 (180)
375 TIGR01978 sufC FeS assembly AT 91.4 0.13 2.9E-06 55.0 2.8 32 674-705 18-49 (243)
376 PRK14250 phosphate ABC transpo 91.3 0.14 3E-06 55.1 2.9 33 674-706 21-53 (241)
377 cd03251 ABCC_MsbA MsbA is an e 91.3 0.14 3.1E-06 54.5 2.9 32 675-706 21-52 (234)
378 PRK14267 phosphate ABC transpo 91.3 0.14 2.9E-06 55.4 2.8 32 675-706 23-54 (253)
379 cd03218 ABC_YhbG The ABC trans 91.3 0.14 3E-06 54.5 2.8 30 677-706 21-50 (232)
380 PRK14240 phosphate transporter 91.3 0.14 3E-06 55.3 2.8 33 673-705 20-52 (250)
381 PRK11248 tauB taurine transpor 91.3 0.14 3.1E-06 55.6 2.9 32 675-706 20-51 (255)
382 PRK13543 cytochrome c biogenes 91.3 0.14 3E-06 54.0 2.8 32 674-705 29-60 (214)
383 cd03230 ABC_DR_subfamily_A Thi 91.2 0.15 3.2E-06 51.9 2.8 32 675-706 19-50 (173)
384 PRK06526 transposase; Provisio 91.2 0.39 8.4E-06 52.4 6.2 28 681-708 97-124 (254)
385 cd03252 ABCC_Hemolysin The ABC 91.2 0.14 3E-06 54.7 2.7 33 674-706 20-52 (237)
386 PRK15177 Vi polysaccharide exp 91.1 0.15 3.2E-06 53.9 2.9 33 675-707 6-38 (213)
387 cd03245 ABCC_bacteriocin_expor 91.1 0.14 3.1E-06 53.9 2.7 30 677-706 25-54 (220)
388 COG3854 SpoIIIAA ncharacterize 91.1 0.23 5E-06 52.7 4.0 42 685-726 140-183 (308)
389 COG3839 MalK ABC-type sugar tr 91.1 0.14 3.1E-06 57.7 2.8 31 674-704 21-51 (338)
390 PRK09493 glnQ glutamine ABC tr 91.1 0.15 3.2E-06 54.6 2.8 33 674-706 19-51 (240)
391 PF00308 Bac_DnaA: Bacterial d 91.1 0.62 1.3E-05 49.6 7.5 34 258-292 35-71 (219)
392 PRK10575 iron-hydroxamate tran 91.1 0.14 3E-06 55.9 2.7 33 674-706 29-61 (265)
393 COG1124 DppF ABC-type dipeptid 91.1 0.21 4.6E-06 53.5 3.9 29 252-281 28-56 (252)
394 cd03231 ABC_CcmA_heme_exporter 91.1 0.15 3.2E-06 53.2 2.7 33 674-706 18-50 (201)
395 PRK14255 phosphate ABC transpo 91.1 0.15 3.2E-06 55.1 2.8 29 676-704 25-53 (252)
396 TIGR02673 FtsE cell division A 91.1 0.15 3.3E-06 53.5 2.8 29 677-705 23-51 (214)
397 cd03295 ABC_OpuCA_Osmoprotecti 91.1 0.15 3.4E-06 54.6 2.9 30 676-705 21-50 (242)
398 PRK10584 putative ABC transpor 91.0 0.15 3.3E-06 54.1 2.8 32 675-706 29-60 (228)
399 TIGR03015 pepcterm_ATPase puta 91.0 0.84 1.8E-05 49.4 8.7 25 683-707 44-68 (269)
400 cd03293 ABC_NrtD_SsuB_transpor 91.0 0.15 3.2E-06 53.9 2.7 31 676-706 24-54 (220)
401 cd03214 ABC_Iron-Siderophores_ 91.0 0.15 3.3E-06 52.2 2.7 33 674-706 17-49 (180)
402 PRK05748 replicative DNA helic 91.0 0.22 4.9E-06 58.6 4.4 63 664-726 184-247 (448)
403 cd03301 ABC_MalK_N The N-termi 91.0 0.15 3.3E-06 53.4 2.8 31 676-706 20-50 (213)
404 PRK14086 dnaA chromosomal repl 91.0 0.49 1.1E-05 57.4 7.3 34 684-717 316-350 (617)
405 cd03215 ABC_Carb_Monos_II This 91.0 0.15 3.3E-06 52.3 2.7 33 675-707 19-51 (182)
406 PRK11629 lolD lipoprotein tran 91.0 0.16 3.4E-06 54.2 2.9 30 676-705 29-58 (233)
407 COG2874 FlaH Predicted ATPases 91.0 1.5 3.2E-05 46.4 9.7 155 681-865 27-192 (235)
408 TIGR03411 urea_trans_UrtD urea 91.0 0.15 3.2E-06 54.7 2.6 31 676-706 22-52 (242)
409 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.9 0.15 3.2E-06 54.5 2.7 32 675-706 22-53 (238)
410 cd03290 ABCC_SUR1_N The SUR do 90.9 0.16 3.4E-06 53.7 2.8 30 677-706 22-51 (218)
411 PF01695 IstB_IS21: IstB-like 90.9 0.39 8.4E-06 49.5 5.6 49 679-735 44-92 (178)
412 COG4987 CydC ABC-type transpor 90.9 0.17 3.7E-06 59.5 3.2 34 676-709 358-391 (573)
413 PRK14957 DNA polymerase III su 90.9 0.71 1.5E-05 55.6 8.5 27 681-707 36-63 (546)
414 cd03248 ABCC_TAP TAP, the Tran 90.9 0.17 3.6E-06 53.7 2.9 30 677-706 35-64 (226)
415 PRK08727 hypothetical protein; 90.9 0.87 1.9E-05 48.9 8.5 37 258-295 42-79 (233)
416 TIGR02770 nickel_nikD nickel i 90.9 0.15 3.3E-06 54.2 2.7 32 676-707 6-37 (230)
417 PRK07261 topology modulation p 90.9 0.16 3.5E-06 51.8 2.7 24 683-706 1-24 (171)
418 PRK10895 lipopolysaccharide AB 90.8 0.17 3.6E-06 54.3 2.9 33 674-706 21-53 (241)
419 PRK10851 sulfate/thiosulfate t 90.8 0.16 3.5E-06 58.0 2.9 33 674-706 20-52 (353)
420 PRK11264 putative amino-acid A 90.8 0.16 3.5E-06 54.7 2.8 32 675-706 22-53 (250)
421 PF13521 AAA_28: AAA domain; P 90.8 0.22 4.8E-06 50.0 3.6 22 684-705 1-22 (163)
422 TIGR00455 apsK adenylylsulfate 90.8 1.6 3.4E-05 44.8 9.9 82 680-781 16-97 (184)
423 PRK11247 ssuB aliphatic sulfon 90.8 0.17 3.6E-06 55.2 2.9 33 674-706 30-62 (257)
424 cd03268 ABC_BcrA_bacitracin_re 90.8 0.17 3.7E-06 52.9 2.8 32 675-706 19-50 (208)
425 cd03263 ABC_subfamily_A The AB 90.8 0.16 3.6E-06 53.4 2.8 32 675-706 21-52 (220)
426 PRK14241 phosphate transporter 90.8 0.16 3.6E-06 55.0 2.8 32 675-706 23-54 (258)
427 KOG0057|consensus 90.7 0.24 5.1E-06 58.5 4.1 31 677-707 373-403 (591)
428 PRK15056 manganese/iron transp 90.7 0.17 3.6E-06 55.5 2.8 32 674-705 25-56 (272)
429 COG1127 Ttg2A ABC-type transpo 90.7 0.19 4.1E-06 53.7 3.1 42 676-717 28-69 (263)
430 COG1126 GlnQ ABC-type polar am 90.7 0.32 7E-06 51.3 4.7 91 252-345 23-121 (240)
431 TIGR03005 ectoine_ehuA ectoine 90.7 0.17 3.7E-06 54.7 2.8 33 674-706 18-50 (252)
432 cd03217 ABC_FeS_Assembly ABC-t 90.7 0.17 3.7E-06 52.8 2.7 32 674-705 18-49 (200)
433 PRK13646 cbiO cobalt transport 90.7 0.16 3.5E-06 56.2 2.7 32 676-707 27-58 (286)
434 PRK11432 fbpC ferric transport 90.7 0.17 3.6E-06 57.8 2.9 31 675-705 25-55 (351)
435 cd01853 Toc34_like Toc34-like 90.7 3.4 7.4E-05 44.9 12.9 25 257-282 31-55 (249)
436 PRK10247 putative ABC transpor 90.7 0.17 3.7E-06 53.8 2.8 32 675-706 26-57 (225)
437 TIGR02323 CP_lyasePhnK phospho 90.7 0.17 3.6E-06 54.7 2.7 33 674-706 21-53 (253)
438 COG1134 TagH ABC-type polysacc 90.7 0.17 3.7E-06 54.2 2.7 32 674-705 45-76 (249)
439 TIGR01618 phage_P_loop phage n 90.7 0.48 1E-05 50.5 6.1 21 683-703 13-33 (220)
440 PRK14273 phosphate ABC transpo 90.6 0.17 3.7E-06 54.7 2.8 30 677-706 28-57 (254)
441 PRK14242 phosphate transporter 90.6 0.17 3.7E-06 54.6 2.8 29 677-705 27-55 (253)
442 TIGR02324 CP_lyasePhnL phospho 90.6 0.18 3.8E-06 53.4 2.8 32 675-706 27-58 (224)
443 PRK11831 putative ABC transpor 90.6 0.18 3.8E-06 55.3 2.8 33 674-706 25-57 (269)
444 TIGR01188 drrA daunorubicin re 90.6 0.18 3.8E-06 56.3 2.9 31 676-706 13-43 (302)
445 PRK14262 phosphate ABC transpo 90.5 0.18 3.9E-06 54.3 2.9 32 674-705 21-52 (250)
446 TIGR01184 ntrCD nitrate transp 90.5 0.18 3.8E-06 53.9 2.8 30 677-706 6-35 (230)
447 PRK10908 cell division protein 90.5 0.18 4E-06 53.3 2.9 31 676-706 22-52 (222)
448 PRK13632 cbiO cobalt transport 90.5 0.18 3.8E-06 55.3 2.8 30 677-706 30-59 (271)
449 PRK10771 thiQ thiamine transpo 90.5 0.18 3.8E-06 53.8 2.8 33 674-706 17-49 (232)
450 cd03213 ABCG_EPDR ABCG transpo 90.5 0.18 3.8E-06 52.4 2.7 32 675-706 28-59 (194)
451 PRK13538 cytochrome c biogenes 90.5 0.18 3.9E-06 52.7 2.7 34 674-707 19-52 (204)
452 PRK13641 cbiO cobalt transport 90.5 0.17 3.6E-06 56.1 2.5 33 674-706 25-57 (287)
453 cd03369 ABCC_NFT1 Domain 2 of 90.5 0.2 4.4E-06 52.3 3.1 32 675-706 27-58 (207)
454 PRK14248 phosphate ABC transpo 90.5 0.18 3.9E-06 55.1 2.8 30 676-705 41-70 (268)
455 PRK09544 znuC high-affinity zi 90.5 0.19 4E-06 54.6 2.9 32 675-706 23-54 (251)
456 TIGR03771 anch_rpt_ABC anchore 90.5 0.18 3.9E-06 53.6 2.7 29 678-706 2-30 (223)
457 PRK11650 ugpC glycerol-3-phosp 90.4 0.18 3.9E-06 57.7 2.8 32 674-705 22-53 (356)
458 PRK14237 phosphate transporter 90.4 0.19 4.1E-06 54.9 2.9 32 675-706 39-70 (267)
459 PRK13548 hmuV hemin importer A 90.4 0.18 4E-06 54.8 2.8 30 677-706 23-52 (258)
460 CHL00181 cbbX CbbX; Provisiona 90.4 2.6 5.6E-05 46.8 11.9 140 679-824 56-210 (287)
461 PRK06649 V-type ATP synthase s 90.4 0.33 7.2E-06 47.9 4.2 42 3-44 78-119 (143)
462 PRK14239 phosphate transporter 90.4 0.19 4E-06 54.3 2.8 32 674-705 23-54 (252)
463 PRK14245 phosphate ABC transpo 90.4 0.19 4.1E-06 54.2 2.9 31 674-704 21-51 (250)
464 PRK10253 iron-enterobactin tra 90.4 0.18 3.9E-06 55.0 2.7 32 675-706 26-57 (265)
465 PRK15093 antimicrobial peptide 90.3 0.19 4.1E-06 56.9 2.9 37 670-706 20-57 (330)
466 TIGR03265 PhnT2 putative 2-ami 90.3 0.19 4.1E-06 57.4 2.9 32 674-705 22-53 (353)
467 PRK13645 cbiO cobalt transport 90.3 0.19 4E-06 55.7 2.8 31 676-706 31-61 (289)
468 PRK13648 cbiO cobalt transport 90.3 0.19 4.2E-06 54.9 2.9 33 674-706 27-59 (269)
469 PRK14243 phosphate transporter 90.3 0.19 4.2E-06 54.8 2.9 32 674-705 28-59 (264)
470 cd03233 ABC_PDR_domain1 The pl 90.3 0.17 3.8E-06 52.8 2.4 33 674-706 25-57 (202)
471 PRK11144 modC molybdate transp 90.3 0.23 5.1E-06 56.6 3.6 33 673-705 15-47 (352)
472 PRK14266 phosphate ABC transpo 90.3 0.2 4.3E-06 54.0 2.9 33 673-705 20-52 (250)
473 PRK14269 phosphate ABC transpo 90.3 0.2 4.3E-06 54.0 2.9 32 674-705 20-51 (246)
474 PF13245 AAA_19: Part of AAA d 90.3 0.37 8.1E-06 42.5 4.1 26 682-707 9-35 (76)
475 PRK13638 cbiO cobalt transport 90.2 0.18 3.9E-06 55.2 2.6 32 675-706 20-51 (271)
476 PRK14238 phosphate transporter 90.2 0.2 4.3E-06 54.9 2.9 32 675-706 43-74 (271)
477 PRK14256 phosphate ABC transpo 90.2 0.2 4.3E-06 54.2 2.8 30 677-706 25-54 (252)
478 PRK13649 cbiO cobalt transport 90.2 0.19 4.2E-06 55.2 2.8 31 676-706 27-57 (280)
479 PRK00889 adenylylsulfate kinas 90.2 1.7 3.8E-05 44.0 9.6 28 681-708 3-30 (175)
480 PRK11889 flhF flagellar biosyn 90.2 3 6.4E-05 48.4 12.2 39 681-720 240-278 (436)
481 COG1136 SalX ABC-type antimicr 90.2 0.2 4.4E-06 53.4 2.8 35 670-704 18-53 (226)
482 cd03267 ABC_NatA_like Similar 90.2 0.2 4.3E-06 53.7 2.7 31 676-706 41-71 (236)
483 TIGR00972 3a0107s01c2 phosphat 90.1 0.2 4.4E-06 53.9 2.8 33 674-706 19-51 (247)
484 COG4181 Predicted ABC-type tra 90.1 0.21 4.4E-06 50.9 2.6 26 678-703 32-57 (228)
485 TIGR02880 cbbX_cfxQ probable R 90.1 2.5 5.3E-05 46.9 11.4 137 682-824 58-209 (284)
486 cd03300 ABC_PotA_N PotA is an 90.1 0.19 4.2E-06 53.6 2.6 33 675-707 19-51 (232)
487 PRK14244 phosphate ABC transpo 90.1 0.21 4.5E-06 54.0 2.9 33 674-706 23-55 (251)
488 TIGR01288 nodI ATP-binding ABC 90.1 0.2 4.3E-06 55.9 2.8 31 676-706 24-54 (303)
489 cd03228 ABCC_MRP_Like The MRP 90.1 0.21 4.6E-06 50.7 2.8 30 677-706 23-52 (171)
490 PRK08084 DNA replication initi 90.1 1 2.2E-05 48.4 8.1 69 681-752 44-142 (235)
491 TIGR00968 3a0106s01 sulfate AB 90.1 0.2 4.4E-06 53.6 2.8 30 677-706 21-50 (237)
492 TIGR02769 nickel_nikE nickel i 90.0 0.2 4.4E-06 54.6 2.7 33 674-706 29-61 (265)
493 cd03115 SRP The signal recogni 90.0 2.7 5.9E-05 42.5 10.9 46 260-305 3-48 (173)
494 PF03796 DnaB_C: DnaB-like hel 90.0 0.27 5.8E-06 53.4 3.7 61 241-301 2-64 (259)
495 cd03253 ABCC_ATM1_transporter 90.0 0.21 4.6E-06 53.2 2.9 33 674-706 19-51 (236)
496 PRK10744 pstB phosphate transp 90.0 0.21 4.5E-06 54.4 2.8 31 676-706 33-63 (260)
497 PF03308 ArgK: ArgK protein; 90.0 0.34 7.4E-06 52.6 4.3 44 674-717 20-64 (266)
498 PRK14261 phosphate ABC transpo 90.0 0.21 4.6E-06 54.0 2.8 29 676-704 26-54 (253)
499 PRK13643 cbiO cobalt transport 90.0 0.2 4.4E-06 55.4 2.7 33 674-706 24-56 (288)
500 PRK14272 phosphate ABC transpo 90.0 0.21 4.6E-06 53.9 2.8 30 677-706 25-54 (252)
No 1
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=1.7e-106 Score=920.20 Aligned_cols=467 Identities=41% Similarity=0.660 Sum_probs=431.7
Q ss_pred CCHHHHHHHHHHhcCccc-eeeecceeEEE-------EeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccch
Q psy210 97 LSLENQKKLIKKITGLNY-SSIIRFAYNIE-------YDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA 168 (915)
Q Consensus 97 l~~~~q~~~~~~ipgl~~-a~~~r~g~~~~-------~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a 168 (915)
.+.+.-..+-+.|..++. .++..+|...+ -.-+....++|.+++. ++ ..|+|.+.++ + .+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~ii~v~gl~~~~~gEl~~i~--~~--~~g~Vi~l~~--~----~v~~ 73 (497)
T TIGR03324 4 VLDKAFQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFP--GG--LLGIAFNVDE--D----EVGV 73 (497)
T ss_pred CHHHHHHHHHHHHHhcCCCcceeEEEEEEEEeceEEEEEccCCCCcCCEEEEC--CC--cEEEEEEEcC--C----eEEE
Confidence 333333334446666643 23444454333 3333456788999984 34 5789999998 3 3588
Q ss_pred hhccccccccCCCcccccCccceeccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceee
Q psy210 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSI 248 (915)
Q Consensus 169 ~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~ai 248 (915)
++++.+.+++.|++|.+||+++++|+|+++||||+|++|+|||+++++....+++++.++|++++|.++++||+|||++|
T Consensus 74 ~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aI 153 (497)
T TIGR03324 74 VLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVI 153 (497)
T ss_pred EEecCCcCCcCCCEEEECCCCCeEECCHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEE
Confidence 89999999999999999999999999999999999999999999998887788999999999999999999999999999
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHH
Q psy210 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAA 328 (915)
Q Consensus 249 D~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~ 328 (915)
|+|+|||||||++|||++|+|||+||++||+||+++|++|||++||||++||.+|++++++.++|+||++|++++|+||.
T Consensus 154 D~l~pigrGQR~~Ifg~~g~GKT~Lal~~I~~q~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~ 233 (497)
T TIGR03324 154 DALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPG 233 (497)
T ss_pred eccCCcccCCEEEeecCCCCCHHHHHHHHHHHhcCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhh
Q psy210 329 EQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKK 408 (915)
Q Consensus 329 ~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~ 408 (915)
+|+++||+|||+||||||+|+|||++||||||||+||||||+++||||+++|||||+||+||||+||||++++..|
T Consensus 234 ~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~~~---- 309 (497)
T TIGR03324 234 LQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELG---- 309 (497)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865433
Q ss_pred hccCCCCccceeEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHH
Q psy210 409 IFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRI 488 (915)
Q Consensus 409 ~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~ 488 (915)
+||||+||+|++++||++|||||+++|||||||||||+||++||||||||+.|+||+|+++|.++|+++|+++|.
T Consensus 310 -----~GSITal~~V~~~~dD~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~lr~ 384 (497)
T TIGR03324 310 -----GGSLTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKL 384 (497)
T ss_pred -----CcceeEEEEEEcCCCCCCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCccccCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Q psy210 489 MLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYF 568 (915)
Q Consensus 489 ~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~L 568 (915)
.|++|+|+++|+++|+.+|++++++|+++++|++||+|+.++++++++++..|+++.+|+||++|.+++..|+..+..|+
T Consensus 385 ~la~y~e~e~~~~~G~~ld~~~~~~i~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~~d~~~~~~v~~~~~~~~~~~ 464 (497)
T TIGR03324 385 AYAQFEELETFARFGARLDENTRKTIEHGRRIRACLKQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESAIRAAV 464 (497)
T ss_pred HHHHHHHHHHHHHhhhhcCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccchhhhh
Q psy210 569 RIINLKNNISINKV 582 (915)
Q Consensus 569 r~~~~~lv~~i~ev 582 (915)
++.+++..+.+.+.
T Consensus 465 ~~~~~~~~~~~~~~ 478 (497)
T TIGR03324 465 TSLPADLRERLQSG 478 (497)
T ss_pred HhhhHHHHHHHHhc
Confidence 99999888777654
No 2
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=1.2e-106 Score=917.35 Aligned_cols=442 Identities=47% Similarity=0.733 Sum_probs=423.3
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
..++-.-++...+++.+++. +| ..|+|.+.++ + .+.+++++.+.+++.|++|.+||+++++|+|+++|||
T Consensus 16 ~ii~v~Gl~~~~~ge~~~i~--~~--~~g~vi~~~~--~----~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGR 85 (485)
T CHL00059 16 GIARIYGLDEVMAGELVEFE--DG--TIGIALNLES--N----NVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGR 85 (485)
T ss_pred cEEEEeccccCCcCCEEEEC--CC--CEEEEEEEcC--C----EEEEEEeeCCCCCCCCCEEEECCCcceEEcCHhhcCC
Confidence 45555556677899999985 45 4789999997 3 3578899999999999999999999999999999999
Q ss_pred EeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 202 IVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 202 viD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
|+|++|+|||+++++....+++++.++|++++|.++++||+|||++||+|+|||||||++|||++|+|||+||++||+||
T Consensus 86 Vvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~Lal~~I~~q 165 (485)
T CHL00059 86 VVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQ 165 (485)
T ss_pred EECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHHHHHHHhc
Confidence 99999999999998877778899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhH
Q psy210 282 KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 282 ~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
+++|++|||++||||++||.+|+++++++++|+||++|++++++||.+|+++||+|||+|||||++|+|||++|||||||
T Consensus 166 ~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 166 KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccc
Q psy210 362 AWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISI 441 (915)
Q Consensus 362 a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i 441 (915)
|+||||||+++||||+++|||||+||+||+|+||||++++..| +||||++|+|++++||++|||||+++||
T Consensus 246 A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~~~---------~GSITal~~V~~~~dD~s~pI~~~v~sI 316 (485)
T CHL00059 246 AQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLG---------EGSMTALPIVETQAGDVSAYIPTNVISI 316 (485)
T ss_pred HHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCCCC---------CcceEEEEEEEccCCCCCCcchHhhhhh
Confidence 9999999999999999999999999999999999999875444 7999999999999999999999999999
Q ss_pred cCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHH
Q psy210 442 TDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKIS 521 (915)
Q Consensus 442 ~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~ 521 (915)
|||||||||+||++||||||||+.|+||+|+++|.++|+++|.++|..|++|+|+++|+++++++|++++++|+++++|+
T Consensus 317 tDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~aq~~~~~~~a~~lr~~la~y~e~e~~~~~~~~~d~~~~~~i~~~~~i~ 396 (485)
T CHL00059 317 TDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLR 396 (485)
T ss_pred cceEEEEcHHHHhCCCCCCcCcccchhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhh
Q psy210 522 LLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKV 582 (915)
Q Consensus 522 ~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev 582 (915)
+||+|+.++++++++++.+++++.||+|++++.+++..|+..+++|+++++++.++.+.+.
T Consensus 397 ~~L~Q~~~~~~~~~e~~~~l~a~~~g~l~~~~~~~v~~~~~~l~~~~~~~~~~~~~~i~~~ 457 (485)
T CHL00059 397 ELLKQSQSAPLTVEEQVATIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISST 457 (485)
T ss_pred HHhcCCCCCCCCHHHHHHHHHHhccCCcCccCHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999888777654
No 3
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.7e-106 Score=881.58 Aligned_cols=456 Identities=52% Similarity=0.819 Sum_probs=429.9
Q ss_pred cceeeecce-eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccce
Q psy210 113 NYSSIIRFA-YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFE 191 (915)
Q Consensus 113 ~~a~~~r~g-~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~ 191 (915)
+.-+++..| +..+..=+++..++|.+++. +|. .|-....| .+.+++.++++...++.|++|..||+.+.
T Consensus 27 ~~g~V~sv~DgIa~v~Gl~~~~~~E~~ef~--~~v--~G~alnle------~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~ 96 (504)
T COG0056 27 EVGTVISVGDGIARVSGLENVMAGELVEFP--GGV--KGMALNLE------EDSVGAVILGDYSDIKEGDEVKRTGRILE 96 (504)
T ss_pred ccceEEEEecceEEEecCchhhcCceEEec--CCc--EEEEEecc------ccceeEEEecCCccccCCcEEEeeCceEE
Confidence 334455555 55566666788888988877 333 23333333 24568889999999999999999999999
Q ss_pred eccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChh
Q psy210 192 IPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKT 271 (915)
Q Consensus 192 vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt 271 (915)
+|+++.++|||+|.+|+|+|+++++....+.+++..+|+.++|+++++||+|||++||+|+|||||||++|+||++||||
T Consensus 97 Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKT 176 (504)
T COG0056 97 VPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKT 176 (504)
T ss_pred EecchhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcE
Q psy210 272 TIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDC 351 (915)
Q Consensus 272 ~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~V 351 (915)
++|+++|+||++.+++|||++||||.+.+..+++.|+++|+|+||+||++++++|+.+||++||+|||+|||||++|+||
T Consensus 177 aIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~dv 256 (504)
T COG0056 177 AIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKDV 256 (504)
T ss_pred hhhHHHHHhcccCCcEEEEEEcccchHHHHHHHHHHHHcCCccceEEEEecCCcchhhhhhhhhhhhHHHHHHHhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCC
Q psy210 352 LIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVT 431 (915)
Q Consensus 352 lv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~ 431 (915)
|+||||||+||.|||||||+++||||||+||||+||+||||+|||+++++++| +||||++|+++|.++|++
T Consensus 257 LIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g---------~GSiTALPIIETqagDvS 327 (504)
T COG0056 257 LIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELG---------GGSITALPIIETQAGDVS 327 (504)
T ss_pred EEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccccC---------CCceEeeeeEEeccCcee
Confidence 99999999999999999999999999999999999999999999999999888 899999999999999999
Q ss_pred CccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHH
Q psy210 432 SFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTK 511 (915)
Q Consensus 432 ~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~ 511 (915)
.+||+|++|||||||||+.+||++|+.||||+..||||+|+++|.+.++++++.||..|++|+|++.|++|+++||++++
T Consensus 328 AyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~kamkkvag~lrl~laqYrel~afsqf~sdLd~~T~ 407 (504)
T COG0056 328 AYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIKAMKKVAGSLRLILAQYRELEAFSQFGSDLDKATR 407 (504)
T ss_pred eecccceEEecCCcEEeehhhhhcCCCccccCCceeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhhhhcccc
Q psy210 512 TQLYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKVQQQIGE 588 (915)
Q Consensus 512 ~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~~~l~~ 588 (915)
+.|++++++.++|+|++++|++.++++.++|++.||+|+++|++++..|+..+..|++..++++.+.|.+.. .+++
T Consensus 408 ~~l~~G~r~~ellkQ~~~~p~sv~~qv~ilya~~~G~ld~v~v~~v~~fe~~l~~~~~~~~~~~~~~I~~~~-~l~~ 483 (504)
T COG0056 408 KQLERGKRLTELLKQPQYSPLSVEEQVLILYAGTNGYLDDVPVEKVADFEKELLAYLRSDHKELLEEIRTTK-ELDD 483 (504)
T ss_pred HHHHccHHHHHHhcCCCCCCccHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc-CCCH
Confidence 999999999999999999999999999999999999999999999999999999999999998888887774 3443
No 4
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=1.7e-105 Score=921.73 Aligned_cols=440 Identities=53% Similarity=0.842 Sum_probs=420.5
Q ss_pred EEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEe
Q psy210 124 IEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIV 203 (915)
Q Consensus 124 ~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrvi 203 (915)
++-.-++...+++.+++. +| ..|+|.++++ + -+.+++++.+.+++.|++|.++|+++++|+|+++||||+
T Consensus 39 v~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~--~----~~~~~~~~~~~gi~~g~~V~~~~~~~~v~vg~~llGrv~ 108 (502)
T PRK09281 39 ARVYGLDNVMAGELLEFP--GG--VYGIALNLEE--D----NVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVV 108 (502)
T ss_pred EEEECccccccCCEEEEC--CC--cEEEEEEEcC--C----eEEEEEecCcccccCCCeeeecCCceEEecCHHhcCCEE
Confidence 333444467899999985 45 6899999998 3 347889999999999999999999999999999999999
Q ss_pred CCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcC
Q psy210 204 NSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN 283 (915)
Q Consensus 204 D~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~ 283 (915)
|++|+|||+++++...++++++..||+|++|.++++||+|||++||+|+|||||||++|||++|+|||+||++||+||++
T Consensus 109 d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~lal~~i~~~~~ 188 (502)
T PRK09281 109 NPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG 188 (502)
T ss_pred ccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCCCCchHHHHHHHHHhcC
Confidence 99999999999888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 284 KNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 284 ~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
+|++|||++||||++|+.+|++++++.++++||++|++++|+||.+|+++||+|||+|||||++|+|||+|||||||||+
T Consensus 189 ~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~ 268 (502)
T PRK09281 189 KDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAV 268 (502)
T ss_pred CCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccC
Q psy210 364 AYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITD 443 (915)
Q Consensus 364 A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~d 443 (915)
|+||||+++||||+++|||||||++||+|+||||++++..| +||||++|+|++|+||++|||||+++||||
T Consensus 269 A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~---------~GSITal~~V~~~~dD~s~pI~d~~~sItD 339 (502)
T PRK09281 269 AYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELG---------GGSLTALPIIETQAGDVSAYIPTNVISITD 339 (502)
T ss_pred HHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCC---------CccEEEEEEEECCCCCCCCcchHhhhcccc
Confidence 99999999999999999999999999999999999865333 799999999999999999999999999999
Q ss_pred cEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHHHH
Q psy210 444 GQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLL 523 (915)
Q Consensus 444 gqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~~f 523 (915)
|||||||+||++||||||||+.|+||+|+.++.++|+++|.++|..|++|+|+++|+++|+++|++++++|+++++|++|
T Consensus 340 GqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~~~~~~~a~~lr~~la~y~e~~~l~~~g~~l~~~~~~~l~~~~~i~~f 419 (502)
T PRK09281 340 GQIFLESDLFNAGIRPAINVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLERGQRLVEL 419 (502)
T ss_pred eEEEEcHHHHhCCCCCccCCcccccccCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhh
Q psy210 524 MKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKV 582 (915)
Q Consensus 524 L~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev 582 (915)
|+|+.++++++++++.++|++.||+|+.+|.+++..|+..+++|+++.+++..+.+...
T Consensus 420 L~Q~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~i~~~~~~~~~~l~~~~~~~~~~I~~~ 478 (502)
T PRK09281 420 LKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYLRSNHADLLEEIRET 478 (502)
T ss_pred hCCCCCCCCCHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999888777553
No 5
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=3e-105 Score=913.97 Aligned_cols=440 Identities=47% Similarity=0.771 Sum_probs=421.1
Q ss_pred EEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEe
Q psy210 124 IEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIV 203 (915)
Q Consensus 124 ~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrvi 203 (915)
++.+-+....+++.+++. +| ..|+|.+.++ + .+.+++|+.+.+++.|++|.+||+++++|+|+.+||||+
T Consensus 39 ~~v~gl~~~~~ge~~~i~--~~--~~g~V~~l~~--~----~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVi 108 (502)
T PRK13343 39 AFVSGLPDAALDELLRFE--GG--SRGFAFNLEE--E----LVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVI 108 (502)
T ss_pred EEEeCCCCCCCCCEEEEC--CC--cEEEEEEecC--C----eEEEEEeeCCCCCCCCCEeEecCCcceeecCHHhcCCEE
Confidence 334444566899999983 45 6889999997 3 347889999999999999999999999999999999999
Q ss_pred CCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcC
Q psy210 204 NSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN 283 (915)
Q Consensus 204 D~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~ 283 (915)
|++|+|||+++++....+++++..+|++++|.++++||+||||+||+|+|||||||++|||++|+|||+||++||+||++
T Consensus 109 d~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt~Lal~~i~~~~~ 188 (502)
T PRK13343 109 DPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIINQKD 188 (502)
T ss_pred CCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCCCCCccHHHHHHHHhhcC
Confidence 99999999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 284 KNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 284 ~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
+|++|||++||||++||.+|++++++.++|+||++|++++++||++|+++||+|||+||||||+|+|||++||||||||+
T Consensus 189 ~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~ 268 (502)
T PRK13343 189 SDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAA 268 (502)
T ss_pred CCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEecchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccC
Q psy210 364 AYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITD 443 (915)
Q Consensus 364 A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~d 443 (915)
||||||+++||||+++|||||+||+||||+||||+++...| +||||++|+|++++||++|||||+++||||
T Consensus 269 A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~---------gGSITal~~V~~~~dD~s~pI~~~v~sItD 339 (502)
T PRK13343 269 AYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELG---------GGSLTALPIIETLAGELSAYIPTNLISITD 339 (502)
T ss_pred HHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCC---------CcceEEEEEEEcCCCCCCCcchhhhhcccc
Confidence 99999999999999999999999999999999999865433 799999999999999999999999999999
Q ss_pred cEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHHHH
Q psy210 444 GQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLL 523 (915)
Q Consensus 444 gqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~~f 523 (915)
|||||||+||++||||||||+.|+||+|+++|.++|++++.++|..|++|+|+++|+++|+.+|++++++|+++++|++|
T Consensus 340 GqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~lr~~la~y~e~e~~~~~G~~ld~~~~~~i~~~~~i~~~ 419 (502)
T PRK13343 340 GQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLDYAQFLELEAFTRFGGLLDAGTQKQITRGRRLREL 419 (502)
T ss_pred eEEEECHHHHhCCCCCccCCccchhccCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred hhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhh
Q psy210 524 MKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKV 582 (915)
Q Consensus 524 L~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev 582 (915)
|+|+.++++++++++..|+++.+|+|+++|.+++..|+..+.+|+++++++.++.+.+.
T Consensus 420 L~Q~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 478 (502)
T PRK13343 420 LKQPRFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLLEKLDARFAALSLALESP 478 (502)
T ss_pred hcCCCCCCCCHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999888877664
No 6
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=3.9e-104 Score=899.35 Aligned_cols=445 Identities=36% Similarity=0.540 Sum_probs=416.7
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
+..+-.=.....+++.+++...+ ...|+|.++++ + .+++++++.+.+++.|++|.+||+++++|+|+++|||
T Consensus 11 ~i~~v~Gl~~~~~ge~~~~~~~~--~~~g~V~~~~~--~----~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGR 82 (507)
T PRK07165 11 YIVEVKGEYDYQQNQFFTLKNNP--NVKAFVISATE--D----KAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGK 82 (507)
T ss_pred eEEEEEcccCCCcCCEEEECCCC--eEEEEEEEEeC--C----eEEEEEccCccCCCCCCEEEECCCccEEECCccccCC
Confidence 45555555567899999985332 36899999997 3 3478899999999999999999999999999999999
Q ss_pred EeCCCceeecCCCcccc-----cccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHH
Q psy210 202 IVNSKGEFIDNKKKFLI-----KNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAID 276 (915)
Q Consensus 202 viD~lG~PiD~~~~~~~-----~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~ 276 (915)
|+|++|+|||+++++.. ..+++++.+||+|++|.++++||+|||++||+|+|||||||++|||++|||||+|+++
T Consensus 83 Vvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~lal~ 162 (507)
T PRK07165 83 IIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALN 162 (507)
T ss_pred EECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHHHHH
Confidence 99999999999987665 4567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEec
Q psy210 277 TIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYD 356 (915)
Q Consensus 277 ~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~D 356 (915)
+|+||+++|++|||++||||++|+.+|+++++++++|+||++|++++ +||++|+++||+|||+|||||++ +|||+|||
T Consensus 163 ~I~~q~~~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~ats-d~~~~r~~ap~~a~tiAEyfrd~-~dVLlv~D 240 (507)
T PRK07165 163 TIINQKNTNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPS-TSPYEQYLAPYVAMAHAENISYN-DDVLIVFD 240 (507)
T ss_pred HHHHhcCCCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCC-CCHHHHHHHHHHHHHHHHHHHhc-CceEEEEc
Confidence 99999999999999999999999999999999999999999999998 59999999999999999999999 99999999
Q ss_pred cchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccc
Q psy210 357 DLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPT 436 (915)
Q Consensus 357 dltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~ 436 (915)
||||||+|+||||+++||||+++||||||||.||+||||||++++ +||||++|+|+|++||++|||||
T Consensus 241 dLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~g------------~GSITalpiV~t~~dDis~pIpd 308 (507)
T PRK07165 241 DLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFKN------------RKTITALPILQTVDNDITSLISS 308 (507)
T ss_pred ChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCCC------------CCceEEEEEEECCCCCCCCcchh
Confidence 999999999999999999999999999999999999999999853 68999999999999999999999
Q ss_pred ccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHh
Q psy210 437 NVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYN 516 (915)
Q Consensus 437 ~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~ 516 (915)
+++|||||||||||+||++||||||||+.|+||+|+++|.+.|+++++.+|+.|++|+|+++++++++++|++++++|++
T Consensus 309 nv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~q~~~~~~~a~~~r~~la~Y~e~e~~~~~~~~ld~~~~~~l~~ 388 (507)
T PRK07165 309 NIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSKTITKVAGEISKIYRAYKRQLKLSMLDYDLNKETSDLLFK 388 (507)
T ss_pred hhccccCeEEEEcHHHHhCCCCCCcCCccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccch-hhHHHHHHHHHHHHhhhcccccchhhhhhhccccce
Q psy210 517 GEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPI-KQIELFEINIIKYFRIINLKNNISINKVQQQIGENI 590 (915)
Q Consensus 517 ~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~-~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~~~l~~~~ 590 (915)
+++|++||+|+++++++.++++.+++++.||+|+.+|. +++..|++.+++| +..+++..+.|.+-. .++++.
T Consensus 389 g~~i~~~L~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~-~~~~~~ 461 (507)
T PRK07165 389 GKMIEKMFNQKGFSLYSYRFVLLISKLISWGLLKDVKDEQKALDFIDYLIEN-DPDAKKIFNKIKNNE-DVDDEL 461 (507)
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhhhhhCCcHHHHHHHHHHHHHh-hhhhHHHHHHHHhcC-CCCHHH
Confidence 99999999999999999999999999999999999998 9999999999999 888888777765553 344443
No 7
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=7.8e-104 Score=907.87 Aligned_cols=439 Identities=54% Similarity=0.842 Sum_probs=418.7
Q ss_pred EEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeC
Q psy210 125 EYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVN 204 (915)
Q Consensus 125 ~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD 204 (915)
+-.-+....+++.+++. +| ..|+|.++++ + .+.+++++.+.+++.|++|.+||+++++|+|+++||||+|
T Consensus 39 ~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~--~----~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~llGRV~d 108 (501)
T TIGR00962 39 RVYGLENVMSGELIEFE--GG--VQGIALNLEE--D----SVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVN 108 (501)
T ss_pred EEECCcCCCCCCEEEEC--CC--eEEEEEEecC--C----eEEEEEecCCcCCCCCCeeEecCCccEEecChHhcCCEeC
Confidence 33334467889999984 45 6889999997 3 3478899999999999999999999999999999999999
Q ss_pred CCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCC
Q psy210 205 SKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNK 284 (915)
Q Consensus 205 ~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~ 284 (915)
++|+|||+++++....+++++..+|++++|.++++||+|||++||+|+|||||||++|||++|+|||+||++||+||+++
T Consensus 109 ~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt~Lal~~i~~~~~~ 188 (501)
T TIGR00962 109 ALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIINQKDS 188 (501)
T ss_pred CCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCCCCccHHHHHHHHhhcCC
Confidence 99999999988877777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHH
Q psy210 285 NVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 285 ~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
|++|||++||||++|+.+|++++++.++|+||++|++++|+||.+|+++||+|||+||||||+|+|||++||||||||+|
T Consensus 189 dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~A 268 (501)
T TIGR00962 189 DVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVA 268 (501)
T ss_pred CeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCc
Q psy210 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDG 444 (915)
Q Consensus 365 ~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dg 444 (915)
+||||+++||||+++|||||+||.||+|+||||++++..| +||||++|+|++|+||++|||||+++|||||
T Consensus 269 ~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~~g---------~GSITal~~V~~~~dD~s~pI~~~~~sItDG 339 (501)
T TIGR00962 269 YRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEKG---------GGSLTALPIIETQAGDVSAYIPTNVISITDG 339 (501)
T ss_pred HHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCCCC---------CcceEEEEEEECCCCCCCCcchHhhhhhcce
Confidence 9999999999999999999999999999999999865333 6999999999999999999999999999999
Q ss_pred EEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHHHHh
Q psy210 445 QIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLM 524 (915)
Q Consensus 445 qi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~~fL 524 (915)
||||||+||++||||||||+.|+||+|++++.++|++++.++|..|++|+|+++|+++|+++|++++.+|+++++|++||
T Consensus 340 qIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~~~~~~~a~~lr~~la~y~e~~~l~~~g~~ld~~~~~~l~~~~~i~~fL 419 (501)
T TIGR00962 340 QIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQVAGSLRLELAQYRELEAFSQFASDLDEATKAQLERGKRLVELL 419 (501)
T ss_pred EEEEcHhHHhCCCCCccCCccchhccCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhh
Q psy210 525 KQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKV 582 (915)
Q Consensus 525 ~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev 582 (915)
+|+.++++++++++.+++++.||+|+.++.+++..|+..+.+|+++.+++.++.+.+.
T Consensus 420 ~Q~~~~~~~~~~q~~~l~a~~~G~l~~v~~~~i~~~~~~l~~~l~~~~~~~~~~i~~~ 477 (501)
T TIGR00962 420 KQPQYKPLPVEEQVVILYAGTKGYLDDIPVDKVRKFEQELLDYLDANHPDILEEINTK 477 (501)
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999887777554
No 8
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=3.9e-103 Score=881.15 Aligned_cols=448 Identities=43% Similarity=0.672 Sum_probs=409.6
Q ss_pred HHHHHHHHHHhcCccceeeecceeEEEE--eecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhcccccc
Q psy210 99 LENQKKLIKKITGLNYSSIIRFAYNIEY--DYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKN 176 (915)
Q Consensus 99 ~~~q~~~~~~ipgl~~a~~~r~g~~~~~--~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~g 176 (915)
.+-|+.+|+.+.-.-.+.-+-=|.+..| .=++...++|.++++..++-...|++..+++ +. -+.+++++.+.+
T Consensus 27 ~~~~~~~~~~~~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~--d~---~v~~v~lg~~~g 101 (574)
T PTZ00185 27 APGQKSFFKATEMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEK--DG---RIGIILMDNITE 101 (574)
T ss_pred CCcchhhhhhheeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecC--CC---eEEEEEecCccC
Confidence 3568888887655444433321122222 3444678999999987666667899999997 21 257889999999
Q ss_pred ccCCCcccccCccceeccccccceeEeCCCceeecCC------Cccccc-ccccccccCCCCCcccccCccccccceeee
Q psy210 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNK------KKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSID 249 (915)
Q Consensus 177 l~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~------~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD 249 (915)
++.|++|++||+++++|+|+++||||+|++|+|||++ +++.+. .+++++..||+|++|.++++||+|||++||
T Consensus 102 I~~G~~V~~tg~~~~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID 181 (574)
T PTZ00185 102 VQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVD 181 (574)
T ss_pred CCCCCEEEECCCccEEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeee
Confidence 9999999999999999999999999999999999987 444544 467999999999999999999999999999
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHhhc--------CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEe
Q psy210 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK--------NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAA 321 (915)
Q Consensus 250 ~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~--------~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~ 321 (915)
+|+|||||||++|||++|+|||+||+++|+||+ +.+++|||++||||.+|+.++++.|++.|+|+||++|++
T Consensus 182 ~LiPIGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~A 261 (574)
T PTZ00185 182 TMIPIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAA 261 (574)
T ss_pred ccccccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEE
Confidence 999999999999999999999999999999997 345789999999999999999999999999999999999
Q ss_pred cCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccc
Q psy210 322 TAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINK 401 (915)
Q Consensus 322 ~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~ 401 (915)
++++||.+|+++||+|||+||||||+|+|||++||||||||+|+||||+++||||+++|||||+||+||+|+||||++++
T Consensus 262 tAdep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~ 341 (574)
T PTZ00185 262 TAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSP 341 (574)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHH
Q psy210 402 YFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKK 481 (915)
Q Consensus 402 ~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~ 481 (915)
..| +||||++|+|+||+||++|||||+++|||||||||||+||++|+||||||+.|+||+|+++|.+.|++
T Consensus 342 ~~G---------~GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~aq~~~~k~ 412 (574)
T PTZ00185 342 GKG---------GGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNVAMKA 412 (574)
T ss_pred CCC---------CcceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCccCCHHHHH
Confidence 444 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHH
Q psy210 482 LSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFE 561 (915)
Q Consensus 482 ~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~ 561 (915)
+|+++|..|++|+|++.|++||+++|+ ..|+++++++++|+|++ |+++++++.++|+..+|+||++|++++..++
T Consensus 413 vAg~lr~~LaqY~El~~fa~fgsdld~---~~l~rG~r~~ellkQ~~--p~~~~~qv~~l~a~~~g~ld~~~~~~i~~~~ 487 (574)
T PTZ00185 413 VAGKLKGILAEYRKLAADSVGGSQVQT---VPMIRGARFVALFNQKN--PSFFMNALVSLYACLNGYLDDVKVNYAKLYE 487 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhH---HHHHhhHHHHHHHCCCC--CCCHHHHHHHHHHHhcCCcccCcHHHHHHHH
Confidence 999999999999999999999999999 88999999999999998 9999999999999999999999999999888
Q ss_pred HHHH
Q psy210 562 INII 565 (915)
Q Consensus 562 ~~Li 565 (915)
..+.
T Consensus 488 ~~~~ 491 (574)
T PTZ00185 488 YLLV 491 (574)
T ss_pred Hhcc
Confidence 6544
No 9
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=6.3e-99 Score=823.64 Aligned_cols=331 Identities=36% Similarity=0.583 Sum_probs=322.0
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccc
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSN 658 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~ 658 (915)
.+||+ .|+++.+.++||++..|+..|++|..+++++++++|++|||||+|++|+|+|+++.+....+.|+..+||+|++
T Consensus 61 ~aEVv-gf~~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~ 139 (441)
T COG1157 61 LAEVV-GFNEERVLLMPFEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLK 139 (441)
T ss_pred eEEEE-EEcCCeEEEeccCccccCCCCCEEEecCCccccccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchh
Confidence 56664 89999999999999999999999999999999999999999999999999999888888889999999999999
Q ss_pred cccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 659 QIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 659 r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
|+++.++|.||||+||+|+|||+|||+||||++|+||||||+||+++.+ .|++|++|||||+|||+||+++...+..
T Consensus 140 R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStLLgMiar~t~---aDv~ViaLIGERGREVrEFIE~~Lg~eg 216 (441)
T COG1157 140 RRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNVIALIGERGREVREFIEKDLGEEG 216 (441)
T ss_pred cccccccccccceeeecccccccCceeEEEecCCCcHHHHHHHHhcccc---CCEEEEEEeeccchhHHHHHHHhcchhh
Confidence 9999999999999999999999999999999999999999999999875 5999999999999999999998777777
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l 818 (915)
++|||+|++|||+||.+|.+++++|++|||||||||||||++|||+||||+|+|||+++.||||+++|||||+|+.|++|
T Consensus 217 l~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~L 296 (441)
T COG1157 217 LKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRL 296 (441)
T ss_pred ccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHH
Q psy210 819 QERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVAN 898 (915)
Q Consensus 819 ~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~ 898 (915)
+||+|+..+||||+||||++++||++|||+|++++|+||||||||+||++||||||||++|+||+| +.+++++|++.|+
T Consensus 297 lERaG~~~~GsITafYTVLveGDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm-~~i~~~~h~~~a~ 375 (441)
T COG1157 297 LERAGNGDKGSITAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVM-PQIVSEEHRKAAR 375 (441)
T ss_pred HhhcCCCCCCcEEEEEEEEeecCCCCCchhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHh-hhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6899999999999
Q ss_pred HHHHHHHccHhhhhcc
Q psy210 899 EVKFYLQKYKELKDTS 914 (915)
Q Consensus 899 ~~r~~l~~~~e~~~~~ 914 (915)
++|++|+.|+|+|++.
T Consensus 376 ~~r~lls~y~e~edLi 391 (441)
T COG1157 376 RLRQLLSRYEENEDLI 391 (441)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999985
No 10
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.4e-96 Score=839.63 Aligned_cols=427 Identities=23% Similarity=0.322 Sum_probs=397.1
Q ss_pred eeEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCc-ccccCccceeccccccc
Q psy210 121 AYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQK-CFCTEKIFEIPVGFELL 199 (915)
Q Consensus 121 g~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~-V~~tg~~~~vpvg~~lL 199 (915)
|..++-.-..+..+++.++++..++....|+|.++++ + .+.+++|+.+.+++.|+. |.+|++++++|+|+++|
T Consensus 10 g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~~--~----~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~~lL 83 (458)
T TIGR01041 10 GPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSE--G----LAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSEDML 83 (458)
T ss_pred ccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEEC--C----EEEEEEecCCcCcCCCCcEEEECCCceEEEcChhhc
Confidence 3555555555778999999864467667899999998 3 347889999999998886 99999999999999999
Q ss_pred eeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHH
Q psy210 200 GRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTII 279 (915)
Q Consensus 200 GrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~ 279 (915)
|||+|++|+|||+++++.+..++++++.+|+|+.|.++++||+|||++||+|+|||+|||++|||++|+|||+| +.||+
T Consensus 84 GRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L-~~~ia 162 (458)
T TIGR01041 84 GRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNEL-AAQIA 162 (458)
T ss_pred cCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHHH-HHHHH
Confidence 99999999999999888777789999999999999999999999999999999999999999999999999999 67799
Q ss_pred hhcCC-----CeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHH-hcCCcEEE
Q psy210 280 NQKNK-----NVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLI 353 (915)
Q Consensus 280 ~~~~~-----~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r-~~g~~Vlv 353 (915)
+|++. +++|||++||||++|+.+|++++++.++|+|||+|++|||+||.+|+++||+|||+||||| ++|+|||+
T Consensus 163 ~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLl 242 (458)
T TIGR01041 163 RQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLV 242 (458)
T ss_pred HhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHccCCcEEE
Confidence 98754 4579999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred EeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCc
Q psy210 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSF 433 (915)
Q Consensus 354 ~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~p 433 (915)
++|||||||+|+||||+++||||+++|||||+|+.||+|+||||++++ ++||||+||+|++|+||++||
T Consensus 243 i~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~~-----------~~GSITai~tV~~~gdD~~dP 311 (458)
T TIGR01041 243 ILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKG-----------KKGSITQMPILTMPGDDITHP 311 (458)
T ss_pred EEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCCC-----------CCcceEEEEEEEcCCCCCCCc
Confidence 999999999999999999999999999999999999999999999752 279999999999999999999
Q ss_pred cccccccccCcEEEeehhhhhcCCCCeeeecCCccccccc-----cccHHHHHHHHHHHHHHHhhHHHHhhhhc-c-CCC
Q psy210 434 IPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGA-----AQYKIVKKLSGDIRIMLAQYRELESFSKF-S-SDL 506 (915)
Q Consensus 434 i~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~-----~~~~~~~~~a~~lr~~la~~~e~e~l~~l-G-~~l 506 (915)
|||+++|||||||+|||+||++||||||||+.|+||+|.. .+.++|++++.+++..|+++++++++.++ | +.+
T Consensus 312 I~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~~~~~~~~a~~l~~~y~~~~~L~~i~~~~G~d~l 391 (458)
T TIGR01041 312 IPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVGEEAL 391 (458)
T ss_pred hHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 9999999999999999999999999999999999999876 78899999999999999999999999998 7 589
Q ss_pred CHHHHHHHHhHHHH-HHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHh
Q psy210 507 DIVTKTQLYNGEKI-SLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569 (915)
Q Consensus 507 d~~~~~~L~~~~~i-~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr 569 (915)
++++.+.+.++++| ++||+|+.+++.+++++++.+| ++|+.+|.+++..+++.+++...
T Consensus 392 ~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~~~~ 451 (458)
T TIGR01041 392 SERDRKYLKFADLFERRFVRQGRNENRSIEETLDIGW----ELLSILPESELKRIDEEYIEKYH 451 (458)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH----HHHhhCCHHHHHHHHHHHHHHhc
Confidence 99999999999995 8999999999999999999999 77899999999999999876443
No 11
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.8e-96 Score=841.60 Aligned_cols=428 Identities=22% Similarity=0.314 Sum_probs=396.9
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhcccccccc-CCCcccccCccceeccccccce
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLT-QGQKCFCTEKIFEIPVGFELLG 200 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~-~G~~V~~tg~~~~vpvg~~lLG 200 (915)
..++-.-..+..+++.+++...++....|+|.++++ + .+.+++|+++.+++ .|++|.+||+++++|+|+++||
T Consensus 13 ~~v~v~g~~~~~~ge~~~i~~~~~~~~~geVi~~~~--~----~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg~~lLG 86 (460)
T PRK04196 13 PLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSE--D----KAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVSEDMLG 86 (460)
T ss_pred cEEEEeccCCCCCCCEEEEEcCCCCEEEEEEEEEeC--C----eEEEEEccCCCCCCCCCCEEEeCCCccEEEcCccccc
Confidence 455555555678999999854456667899999998 3 34788999999999 8999999999999999999999
Q ss_pred eEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 201 RIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 201 rviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
||+|++|+|||+++++.+..+++++..+|+|++|.++++||+||||+||.|+|||+|||++|||++|+|||+| +.+|++
T Consensus 87 RVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L-~~~ia~ 165 (460)
T PRK04196 87 RIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNEL-AAQIAR 165 (460)
T ss_pred CEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccHH-HHHHHH
Confidence 9999999999999888777778999999999999999999999999999999999999999999999999999 677998
Q ss_pred hcCC-----CeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHH-hcCCcEEEE
Q psy210 281 QKNK-----NVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLII 354 (915)
Q Consensus 281 ~~~~-----~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r-~~g~~Vlv~ 354 (915)
|++. +++|||++||||++||.+|++++++.++|+|||+|++|||+||.+|+++||+|||+||||| |+|+|||++
T Consensus 166 ~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli 245 (460)
T PRK04196 166 QAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGMHVLVI 245 (460)
T ss_pred hhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 8644 5679999999999999999999999999999999999999999999999999999999999 799999999
Q ss_pred eccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcc
Q psy210 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFI 434 (915)
Q Consensus 355 ~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi 434 (915)
+|||||||+|+||||+++||||+++|||||+|+.||+||||||++++ ++||||+||+|++|+||++|||
T Consensus 246 ~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~-----------~~GSITai~~V~~~gdD~~dpI 314 (460)
T PRK04196 246 LTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKG-----------KKGSITQIPILTMPDDDITHPI 314 (460)
T ss_pred EcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCC-----------CCeeeEEEEEEEcCCCCCCCch
Confidence 99999999999999999999999999999999999999999999752 2799999999999999999999
Q ss_pred ccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccc-----cHHHHHHHHHHHHHHHhhHHHHhhhhc-c-CCCC
Q psy210 435 PTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ-----YKIVKKLSGDIRIMLAQYRELESFSKF-S-SDLD 507 (915)
Q Consensus 435 ~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~-----~~~~~~~a~~lr~~la~~~e~e~l~~l-G-~~ld 507 (915)
||+++|||||||+|||+||++||||||||+.|+||+|.... .++|++++.+++..|++|++++++.++ | +.++
T Consensus 315 ~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~~~~~~~~~a~~l~~~y~~~~~l~~~~~~~G~~~l~ 394 (460)
T PRK04196 315 PDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHKDVANQLYAAYARGKDLRELAAIVGEEALS 394 (460)
T ss_pred hhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 99999999999999999999999999999999999986544 499999999999999999999999998 6 6899
Q ss_pred HHHHHHHHhHHHHH-HHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhh
Q psy210 508 IVTKTQLYNGEKIS-LLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRII 571 (915)
Q Consensus 508 ~~~~~~L~~~~~i~-~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~ 571 (915)
+++.+.+.+++++. +||+|+.+++.+++++++.+| ++|+.+|.+++..|+..+++..+.+
T Consensus 395 d~~~~~~~~~~~~~~~fL~Q~~~~~~~~~~~~~~l~----~~l~~~~~~~l~~~~~~l~~~~~~~ 455 (460)
T PRK04196 395 ERDRKYLKFADAFEREFVNQGFDENRSIEETLDLGW----ELLSILPESELKRIKDEYIEKYHPK 455 (460)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHH----HHHhhCCHHHHHHHHHHHHHHhccc
Confidence 99999999999985 899999999999999999999 7899999999999999988654433
No 12
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-96 Score=805.97 Aligned_cols=391 Identities=29% Similarity=0.399 Sum_probs=371.7
Q ss_pred hcccccccccCCCceE-eeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceeec
Q psy210 133 CLNQTLNIKFANNTVL-SGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFID 211 (915)
Q Consensus 133 ~L~~~le~~~~~g~~~-aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD 211 (915)
.+++.+++....+-.. .++|.|+++ +.+...+|+...++..|++|..+++++.+++++.+||||+|++|+|||
T Consensus 44 ~iGelc~i~~~~~~~~~~aEVvgf~~------~~~~L~p~~~~~gv~~g~~V~~~~~~~~v~~g~~lLGRVld~~G~plD 117 (441)
T COG1157 44 RIGELCKIERSRGSEKVLAEVVGFNE------ERVLLMPFEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLD 117 (441)
T ss_pred cccceEEEEecCCCCceeEEEEEEcC------CeEEEeccCccccCCCCCEEEecCCccccccChhhhhhhhccCCCcCc
Confidence 5778887776543322 789999987 344778999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEE
Q psy210 212 NKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYV 291 (915)
Q Consensus 212 ~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~ 291 (915)
+++......+.++..+||||+.|..+++||.||||+||+|+|||+|||+|||+++|+||||| |.||+++..+|+ +|.+
T Consensus 118 g~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKStL-LgMiar~t~aDv-~Via 195 (441)
T COG1157 118 GGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTL-LGMIARNTEADV-NVIA 195 (441)
T ss_pred CCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcHHHH-HHHHhccccCCE-EEEE
Confidence 98888788889999999999999999999999999999999999999999999999999999 999999999998 6899
Q ss_pred eeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhh
Q psy210 292 CIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLL 371 (915)
Q Consensus 292 ~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~ 371 (915)
+||||+|||+||+++......++|+|+|++|||+||.+|..++++|++|||||||||+|||++|||+||||+|+|||+++
T Consensus 196 LIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA 275 (441)
T COG1157 196 LIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLA 275 (441)
T ss_pred EeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHh
Confidence 99999999999999877777799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEeehh
Q psy210 372 LRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTN 451 (915)
Q Consensus 372 ~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~ 451 (915)
.||||.++||||+||+.+++|+||||+.. +||||+||||++++||++|||+|++++|+||||||||+
T Consensus 276 ~GEpP~~kGYppSVF~~LP~LlERaG~~~-------------~GsITafYTVLveGDD~~dPiaD~~RsILDGHIvLsR~ 342 (441)
T COG1157 276 AGEPPATKGYPPSVFSELPRLLERAGNGD-------------KGSITAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRA 342 (441)
T ss_pred cCCCCccCCCCchHHHHhHHHHhhcCCCC-------------CCcEEEEEEEEeecCCCCCchhhhhhhhccceEEeeHh
Confidence 99999999999999999999999999862 69999999999999999999999999999999999999
Q ss_pred hhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHHhHHHHHHHhhcCC
Q psy210 452 LFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLYNGEKISLLMKQKP 528 (915)
Q Consensus 452 la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~~~~~i~~fL~Q~~ 528 (915)
||++|||||||++.|+||+|+++.+++|++.|.++|++|+.|+|+++|+++| .+.|++.|+++++.+.|++||+|+.
T Consensus 343 LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~~~r~lls~y~e~edLi~iGaY~~G~D~~~D~Ai~~~p~i~~fL~Q~~ 422 (441)
T COG1157 343 LAEAGHYPAIDVLASISRVMPQIVSEEHRKAARRLRQLLSRYEENEDLIRIGAYQKGSDPELDKAIKLYPKIEQFLKQGI 422 (441)
T ss_pred HHhcCCCCCcchHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHHhhHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999 3999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHH
Q psy210 529 HENYSIVELIIILLII 544 (915)
Q Consensus 529 ~e~~s~ee~l~~L~ai 544 (915)
.|..++++++..|..+
T Consensus 423 ~e~~~~~~t~~~L~~~ 438 (441)
T COG1157 423 DEKSSFEETLEQLEAI 438 (441)
T ss_pred cccCCHHHHHHHHHHH
Confidence 9999999999998854
No 13
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=1.6e-93 Score=811.89 Aligned_cols=420 Identities=20% Similarity=0.266 Sum_probs=379.5
Q ss_pred eeEEEEeecC--hhhcccccccccCC--C--ceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecc
Q psy210 121 AYNIEYDYFD--PRCLNQTLNIKFAN--N--TVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPV 194 (915)
Q Consensus 121 g~~~~~~~~~--p~~L~~~le~~~~~--g--~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpv 194 (915)
|-.++..+.+ ...+++.+++.... + ....++|.|..+ + +.+.+.+++.+.+++.|++|.++++++++|+
T Consensus 24 G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~--~---~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpv 98 (494)
T CHL00060 24 GPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLG--N---NRVRAVAMSATDGLMRGMEVIDTGAPLSVPV 98 (494)
T ss_pred ccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeC--C---CeEEEEeccCccCCCCCCEEEeCCCcceeec
Confidence 3444555542 22348888884323 3 136779999886 1 2357888999999999999999999999999
Q ss_pred ccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHH
Q psy210 195 GFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIA 274 (915)
Q Consensus 195 g~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~ 274 (915)
++++||||+|++|+|||+++++...++++++..||+|++|.++++||+|||++||.|+|||||||++|||++|+|||+|+
T Consensus 99 g~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~GvGKs~L~ 178 (494)
T CHL00060 99 GGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLI 178 (494)
T ss_pred chhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCCChhHHH
Confidence 99999999999999999998877777789999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHhhcCC-CeEEEEEeeccchhhHHHHHHHHhccCC-------cceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHh
Q psy210 275 IDTIINQKNK-NVICIYVCIGQKISSLINVINKLKYYNC-------MDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD 346 (915)
Q Consensus 275 l~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~~l~~~~~-------~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~ 346 (915)
.+++.|+++. +.+|||++||||+||+.+|++++.+.++ ++|+++|++++|+||.+|+++||+|+|+|||||+
T Consensus 179 ~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~A~tiAEyfrd 258 (494)
T CHL00060 179 MELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRD 258 (494)
T ss_pred HHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666665533 3459999999999999999999998665 4588999999999999999999999999999999
Q ss_pred cCC-cEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEe
Q psy210 347 LGQ-DCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIET 425 (915)
Q Consensus 347 ~g~-~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~ 425 (915)
+|+ |||+++|||||||+|+||||+++||||+++|||||||+.||+|+||||+.+ +||||+||+|++
T Consensus 259 ~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~~-------------~GSITai~tVl~ 325 (494)
T CHL00060 259 VNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK-------------EGSITSIQAVYV 325 (494)
T ss_pred cCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCCC-------------CCCeeEEEEEEC
Confidence 886 999999999999999999999999999999999999999999999999752 699999999999
Q ss_pred cCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccc-ccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc-
Q psy210 426 LEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV-GGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS- 503 (915)
Q Consensus 426 ~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~-~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG- 503 (915)
|+||++|||||+++|||||||||||+||++||||||||+.|+||+ +.....++|++++.++|+.|++|+|++++++++
T Consensus 326 ~gdD~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~v~~~h~~~a~~~r~~la~y~e~e~li~~~g 405 (494)
T CHL00060 326 PADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILG 405 (494)
T ss_pred CCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhcccccCCHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999 778788999999999999999999999998865
Q ss_pred -CCCCHHHHHHHHhHHHHHHHhhcC----------CCCCccHHHHHHHHHHHhcccccccchhhHH
Q psy210 504 -SDLDIVTKTQLYNGEKISLLMKQK----------PHENYSIVELIIILLIIKNRFFFKIPIKQIE 558 (915)
Q Consensus 504 -~~ld~~~~~~L~~~~~i~~fL~Q~----------~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~ 558 (915)
..++++++++++++++|++||+|+ ..+..++++++..+..+.+|.+++++.++..
T Consensus 406 ~~~ls~~~~~~i~~~~~i~~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~ 471 (494)
T CHL00060 406 LDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFY 471 (494)
T ss_pred cccCCHHHHHHHHhHHHHHHHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHhh
Confidence 388899999999999999999999 5599999999999999999999999877653
No 14
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=2.2e-93 Score=807.92 Aligned_cols=414 Identities=20% Similarity=0.267 Sum_probs=376.3
Q ss_pred EEEEeecC-hhhcccccccccCCCceEeeEeec-cchhHHHhhcccchhhccccccccCCCcccccCccceeccccccce
Q psy210 123 NIEYDYFD-PRCLNQTLNIKFANNTVLSGQING-TTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLG 200 (915)
Q Consensus 123 ~~~~~~~~-p~~L~~~le~~~~~g~~~aGQI~G-t~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLG 200 (915)
-++..|-+ ...+++.|.++. +-...++|.+ +++ +.+.+++++.+.|++.|++|.+|++++++|+|+++||
T Consensus 10 vvdv~f~~~~p~i~~~l~~~~--~~~~~~EVv~~l~~------~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~lLG 81 (449)
T TIGR03305 10 IVDVRFDGELPAIHSVLRAGR--EGEVVVEVLSQLDA------HHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLS 81 (449)
T ss_pred EEEEEeCCCCcchhheEEecC--CCcEEEeeeeEecC------CeEEEEEccCcccCCCCCEEEecCCceEEEcChhhcC
Confidence 44455533 334445666654 3345558887 665 2357889999999999999999999999999999999
Q ss_pred eEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 201 RIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 201 rviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
||+|++|+|||+++++.+..+++++.+||||++|.++++||+|||++||.|+|||||||++|||++|+|||+|+.+++.|
T Consensus 82 RVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~~~ 161 (449)
T TIGR03305 82 RMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHN 161 (449)
T ss_pred CEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHHHH
Confidence 99999999999998877777889999999999999999999999999999999999999999999999999996665666
Q ss_pred hc-CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHh-cCCcEEEEeccc
Q psy210 281 QK-NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD-LGQDCLIIYDDL 358 (915)
Q Consensus 281 ~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~-~g~~Vlv~~Ddl 358 (915)
++ ..+..|||++||||++|+.+|++++++.++++||++|++++|+||.+|++++|+|||+|||||+ +|+|||+++|||
T Consensus 162 ~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 162 MVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCh
Confidence 53 2234589999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccccc
Q psy210 359 TKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNV 438 (915)
Q Consensus 359 tr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~ 438 (915)
||||+|+||||+++||||+++|||||+|+.||+|+||||+.+ +||||+||+|++|+||++|||||++
T Consensus 242 TR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~~-------------~GSIT~i~~V~~~~dD~~dPi~d~~ 308 (449)
T TIGR03305 242 FRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATTS-------------DGAITSIQAVYVPADDFTDPAAVHT 308 (449)
T ss_pred HHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCCC-------------CcCeeEEEEEEccCCCCCCchhHhh
Confidence 999999999999999999999999999999999999999741 7999999999999999999999999
Q ss_pred ccccCcEEEeehhhhhcCCCCeeeecCCccccc-cccccHHHHHHHHHHHHHHHhhHHHHhhhhcc--CCCCHHHHHHHH
Q psy210 439 ISITDGQIFLDTNLFNSNYRPAINVGLSVSRVG-GAAQYKIVKKLSGDIRIMLAQYRELESFSKFS--SDLDIVTKTQLY 515 (915)
Q Consensus 439 ~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~-~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG--~~ld~~~~~~L~ 515 (915)
+|||||||||||+||++||||||||+.|+||+| ...+.++|++++.++|+.|++|+|++++++++ .+++++++++++
T Consensus 309 ~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~~~~l~~y~e~~~li~~~g~~~l~~~~~~~i~ 388 (449)
T TIGR03305 309 FSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRRVVN 388 (449)
T ss_pred hhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHH
Confidence 999999999999999999999999999999999 55567999999999999999999999998874 488888899999
Q ss_pred hHHHHHHHhhcCCCCC----------ccHHHHHHHHHHHhcccccccchhhH
Q psy210 516 NGEKISLLMKQKPHEN----------YSIVELIIILLIIKNRFFFKIPIKQI 557 (915)
Q Consensus 516 ~~~~i~~fL~Q~~~e~----------~s~ee~l~~L~ai~~G~Ld~vp~~ev 557 (915)
++++|++||+|+.++. ++++++++..|.+..|-+++.|..+.
T Consensus 389 ~~~~i~~fL~Q~~~~~e~~t~~~g~~v~l~~tl~~~~~il~g~~~~~~~~~~ 440 (449)
T TIGR03305 389 RARRLERFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILNDEFQDYPERDL 440 (449)
T ss_pred HHHHHHHHhCCCCcccccccCCCCceeEHHHHHHHHHHHhcCCcccCCHHHh
Confidence 9999999999999988 89999999999999999999886543
No 15
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=8.2e-94 Score=809.79 Aligned_cols=337 Identities=69% Similarity=1.076 Sum_probs=328.6
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
.+.||+.+|+++.+++++|+++.||+.|+.|..+++++++|+|+++||||+|++|+|+|+.+++....+||++..+|+++
T Consensus 39 ~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~vg~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~ 118 (461)
T TIGR01039 39 LTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFE 118 (461)
T ss_pred EEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEcChhhcCCEEccCCcccCCCCCCCCCcccccccCCCChh
Confidence 56688877999999999999999999999999999999999999999999999999999988877667899999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|.+++++|+||||+||+|+|||||||+||||++|+|||+|++|+++|+++++++++||++||||+|||+||++++++++
T Consensus 119 ~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~ 198 (461)
T TIGR01039 119 EQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESG 198 (461)
T ss_pred HcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998877889999999999999999999999999
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHH-CCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~-~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~ 816 (915)
+++|||+|+||||+||.+|++++|+|+++|||||| +|+||||+|||+||||+|+||||+++||||+++||||++|+.|+
T Consensus 199 ~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~ 278 (461)
T TIGR01039 199 VIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 278 (461)
T ss_pred CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHH
Confidence 99999999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHH
Q psy210 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKV 896 (915)
Q Consensus 817 ~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~ 896 (915)
+|+||+|+.++||||+||||++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+|++.+++++|+++
T Consensus 279 ~L~ERag~~~~GSITai~tVl~~gdD~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~h~~~ 358 (461)
T TIGR01039 279 ELQERITSTKTGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGEEHYDV 358 (461)
T ss_pred HHHHhcCCCCCCceeEEEEEEccCCCCCCccHHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCCccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999778999999999
Q ss_pred HHHHHHHHHccHhhhhcc
Q psy210 897 ANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 897 ~~~~r~~l~~~~e~~~~~ 914 (915)
++++|++|++|+|+++|.
T Consensus 359 a~~~r~~la~y~e~~~li 376 (461)
T TIGR01039 359 ARGVQQILQRYKELQDII 376 (461)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 999999999999999975
No 16
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=1.2e-93 Score=811.61 Aligned_cols=337 Identities=69% Similarity=1.092 Sum_probs=328.8
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
...||+.+|+++.+++++|+++.||+.|+.|..+++++++|+|+++||||+|++|+|||+.+++...++||++.++|+++
T Consensus 40 ~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~ 119 (463)
T PRK09280 40 LVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFE 119 (463)
T ss_pred EEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEcChhhcCCEEeeeccccCCCCCcCccceecccCCCCChH
Confidence 55688877999999999999999999999999999999999999999999999999999998887778899999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|.+++++|.||||+||+|+|||||||+||||++|+|||+|++|+++|+++++++++||++||||+|||+||++++.+.+
T Consensus 120 ~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~ 199 (463)
T PRK09280 120 ELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESG 199 (463)
T ss_pred HhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999877889999999999999999999999999
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHH-CCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~-~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~ 816 (915)
.++|||+|++|||+||.+|++++|+|+++|||||| +||||||+|||+||||+|+||||+++||||+++||||++|+.|+
T Consensus 200 ~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~ 279 (463)
T PRK09280 200 VLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 279 (463)
T ss_pred CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHH
Q psy210 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKV 896 (915)
Q Consensus 817 ~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~ 896 (915)
+|+||+|+.++||||+||||++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+|++.+++++|+++
T Consensus 280 ~L~ERag~~~~GSITai~tVl~~gdD~~dPI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~~ 359 (463)
T PRK09280 280 QLQERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVGEEHYDV 359 (463)
T ss_pred HHHHHhcCCCCCceeEEEEEECcCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999778899999999
Q ss_pred HHHHHHHHHccHhhhhcc
Q psy210 897 ANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 897 ~~~~r~~l~~~~e~~~~~ 914 (915)
++++|++|++|+|+|++.
T Consensus 360 a~~~r~~la~y~e~e~li 377 (463)
T PRK09280 360 AREVQQILQRYKELQDII 377 (463)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999974
No 17
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=5.2e-93 Score=803.22 Aligned_cols=416 Identities=22% Similarity=0.305 Sum_probs=378.0
Q ss_pred eEEEEeecChhhccccc---ccccCCCceEeeEeec-cchhHHHhhcccchhhccccccccCCCcccccCccceeccccc
Q psy210 122 YNIEYDYFDPRCLNQTL---NIKFANNTVLSGQING-TTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFE 197 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~l---e~~~~~g~~~aGQI~G-t~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~ 197 (915)
-.++-.+.. ..+++.+ ++....+....++|.+ +++ +.+.+++++.+.+++.|++|.++++++++|++++
T Consensus 11 ~~ie~~~~~-~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~------~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~vg~~ 83 (461)
T TIGR01039 11 PVVDVEFEQ-GELPRIYNALKVQNRAESELTLEVAQHLGD------DTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKE 83 (461)
T ss_pred eEEEEEECC-CCCcchheEEEEecCCCceEEEEeeeeeCC------CeEEEEEccCcccCCCCCEEEeCCCceEEEcChh
Confidence 444544432 3456655 6633234235668888 776 3457889999999999999999999999999999
Q ss_pred cceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHH
Q psy210 198 LLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDT 277 (915)
Q Consensus 198 lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~ 277 (915)
+||||+|++|+|||+++++....+||++.++|+|++|.++++||+||||+||.|+|||+|||++|||++|+|||+| +.+
T Consensus 84 lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L-~~~ 162 (461)
T TIGR01039 84 TLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL-IQE 162 (461)
T ss_pred hcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHH-HHH
Confidence 9999999999999999887777789999999999999999999999999999999999999999999999999999 455
Q ss_pred HHh-h-cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHh-cCCcEEEE
Q psy210 278 IIN-Q-KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD-LGQDCLII 354 (915)
Q Consensus 278 i~~-~-~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~-~g~~Vlv~ 354 (915)
+++ + ++.+.+|||++||||+|||.||++++++.++++||++|++++|+||.+|+++||+|+|+|||||+ +|+|||++
T Consensus 163 ~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd~~G~~VLll 242 (461)
T TIGR01039 163 LINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLF 242 (461)
T ss_pred HHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEE
Confidence 544 3 23345689999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred eccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcc
Q psy210 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFI 434 (915)
Q Consensus 355 ~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi 434 (915)
+|||||||+|+||||+++||||+++||||++|+.||+|+||||+.+ +||||+||+|++|+||++|||
T Consensus 243 ~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~-------------~GSITai~tVl~~gdD~~dPi 309 (461)
T TIGR01039 243 IDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITSTK-------------TGSITSVQAVYVPADDLTDPA 309 (461)
T ss_pred ecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCC-------------CCceeEEEEEEccCCCCCCcc
Confidence 9999999999999999999999999999999999999999999741 799999999999999999999
Q ss_pred ccccccccCcEEEeehhhhhcCCCCeeeecCCccccc-cccccHHHHHHHHHHHHHHHhhHHHHhhhhcc--CCCCHHHH
Q psy210 435 PTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVG-GAAQYKIVKKLSGDIRIMLAQYRELESFSKFS--SDLDIVTK 511 (915)
Q Consensus 435 ~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~-~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG--~~ld~~~~ 511 (915)
||++++|+||||+|||+||++||||||||+.|+||+| +..+.++|++++.++|+.|++|+|++++++++ ..+++.++
T Consensus 310 ~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~h~~~a~~~r~~la~y~e~~~li~i~g~~~lsd~~~ 389 (461)
T TIGR01039 310 PATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSEEDK 389 (461)
T ss_pred HHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCCccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCccCCHHHH
Confidence 9999999999999999999999999999999999999 77778999999999999999999999999875 36888899
Q ss_pred HHHHhHHHHHHHhhcCC----------CCCccHHHHHHHHHHHhcccccccchhhHH
Q psy210 512 TQLYNGEKISLLMKQKP----------HENYSIVELIIILLIIKNRFFFKIPIKQIE 558 (915)
Q Consensus 512 ~~L~~~~~i~~fL~Q~~----------~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~ 558 (915)
++++++++|++||+|+. .++.++++++..|..+..|-++++|.++..
T Consensus 390 ~~l~~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~ 446 (461)
T TIGR01039 390 LTVERARRIQRFLSQPFFVAEVFTGQPGKYVPLKDTIRGFKEILEGKYDHLPEQAFY 446 (461)
T ss_pred HHHHhHHHHHHHhCCCCchhccccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHh
Confidence 99999999999999999 899999999999999999999999877653
No 18
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=3e-93 Score=801.79 Aligned_cols=421 Identities=24% Similarity=0.341 Sum_probs=375.3
Q ss_pred EEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccC-CCcccccCccceeccccccceeE
Q psy210 124 IEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQ-GQKCFCTEKIFEIPVGFELLGRI 202 (915)
Q Consensus 124 ~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~-G~~V~~tg~~~~vpvg~~lLGrv 202 (915)
++-.-+....+++.++++..+|....|||.|+++ + -+.+++|+.+.|++. |++|.++++++++|+|+++||||
T Consensus 13 i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~--~----~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~~lLGRV 86 (466)
T TIGR01040 13 VILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSG--N----KAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSEDMLGRV 86 (466)
T ss_pred EEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeC--C----eEEEEEcCCCCCcccCCCEEEECCCccEEEcCcccccCE
Confidence 3333333467889999864467667889999998 3 347889999999997 99999999999999999999999
Q ss_pred eCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 203 VNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 203 iD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+|++|+|||+++++.+..+++++.++|||+.|..+++||+|||++||+|+|||+|||+||||++|+|||+| +.||++|+
T Consensus 87 id~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~L-~~~i~~~~ 165 (466)
T TIGR01040 87 FNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEI-AAQICRQA 165 (466)
T ss_pred ECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHHH-HHHHHHhh
Confidence 99999999999888777778999999999999999999999999999999999999999999999999999 67888876
Q ss_pred C--------------CCeEEEEEeeccchhhHHH-HHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHH-h
Q psy210 283 N--------------KNVICIYVCIGQKISSLIN-VINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-D 346 (915)
Q Consensus 283 ~--------------~~~~~V~~~iGer~~ev~~-~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r-~ 346 (915)
+ .+++|||++|||| +|+.+ +.+.|.+.++++||++|++++|+||.+|+++||+|||+||||| +
T Consensus 166 ~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~~ 244 (466)
T TIGR01040 166 GLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQ 244 (466)
T ss_pred ccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHhhhHHHHHHHHHh
Confidence 4 3457999999999 55555 5557999999999999999999999999999999999999999 7
Q ss_pred cCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEec
Q psy210 347 LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426 (915)
Q Consensus 347 ~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~ 426 (915)
+|+|||+++|||||||+|+||||+++||||+++|||||||+.||+|+||||++++ ++||||+||+|++|
T Consensus 245 ~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~~-----------~~GSITai~tV~~~ 313 (466)
T TIGR01040 245 CEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEG-----------RNGSITQIPILTMP 313 (466)
T ss_pred cCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCCC-----------CCcceEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999998742 26999999999999
Q ss_pred CCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccccccccc-----HHHHHHHHHHHHHHHhhHHHHhhhh
Q psy210 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQY-----KIVKKLSGDIRIMLAQYRELESFSK 501 (915)
Q Consensus 427 ~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~-----~~~~~~a~~lr~~la~~~e~e~l~~ 501 (915)
+||++|||||+++|||||||||||+||++||||||||+.|+||+|+.++. ++|.+++.++...|++++++.++..
T Consensus 314 ~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~~~~~~h~~~a~~l~~~y~~~~~L~~ig~ 393 (466)
T TIGR01040 314 NDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKA 393 (466)
T ss_pred CCCCCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877 7999999886555555555555544
Q ss_pred c-c-CCCCHHHHHHHHhHHHH-HHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Q psy210 502 F-S-SDLDIVTKTQLYNGEKI-SLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKY 567 (915)
Q Consensus 502 l-G-~~ld~~~~~~L~~~~~i-~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~ 567 (915)
+ | +.+++++.+.+.+++.| ++||+|+.+++.++++++...| ++|..+|.+++.++...+++.
T Consensus 394 y~G~d~l~d~a~~~l~~~~~i~~~FL~Q~~~~~~~~~~~l~~~w----~ll~~~~~~~~~r~~~~~~~~ 458 (466)
T TIGR01040 394 VVGEEALSSEDLLYLEFLDKFEKNFIAQGPYENRTIFESLDIAW----QLLRIFPKEMLKRIPAKILEE 458 (466)
T ss_pred hcCCCcCCHHHHHHHHHHHHHHHHHhccCcCCCcCHHHHHHHHH----HHHHhCCHHHhccCCHHHHHH
Confidence 3 3 26777777777799999 7899999999999999999999 678888999998888887763
No 19
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=1.7e-93 Score=808.86 Aligned_cols=338 Identities=50% Similarity=0.855 Sum_probs=329.1
Q ss_pred chhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCc
Q psy210 577 ISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKF 656 (915)
Q Consensus 577 ~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~ 656 (915)
+.+.||+.+|+++.+++++|+++.||+.|+.|..+|+++++|||+++||||+|++|+|+|+++++...+++|+++.+|++
T Consensus 33 ~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~lLGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~ 112 (449)
T TIGR03305 33 EVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTL 112 (449)
T ss_pred cEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhhcCCEEccCccccCCCCCCCCccccchhcCCCCc
Confidence 45678988899999999999999999999999999999999999999999999999999999887777788999999999
Q ss_pred cccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhc
Q psy210 657 SNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736 (915)
Q Consensus 657 ~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~ 736 (915)
++|.+++++|+||||+||+|+|||||||+||||++|+|||+|+.|+++|++++|++++||++||||+||++||++++++.
T Consensus 113 ~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~ 192 (449)
T TIGR03305 113 TRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEA 192 (449)
T ss_pred hhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999877789999999999999999999999999
Q ss_pred CccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHH-CCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHH
Q psy210 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815 (915)
Q Consensus 737 ~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~-~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l 815 (915)
++|+||++|++|||+||.+|++++++|+|+|||||| +|+|||+++||+||||+|+||||+++||||+++||||++|+.|
T Consensus 193 ~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l 272 (449)
T TIGR03305 193 GVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTEL 272 (449)
T ss_pred cccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHh
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHH
Q psy210 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895 (915)
Q Consensus 816 ~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~ 895 (915)
++|+||+|+.++||||+||||++|+||++|||+|++++||||||||||+||++||||||||+.|+||+|++.+++++|++
T Consensus 273 ~~L~ERag~~~~GSIT~i~~V~~~~dD~~dPi~d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~ 352 (449)
T TIGR03305 273 AELEERIATTSDGAITSIQAVYVPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYD 352 (449)
T ss_pred HHHHHhhcCCCCcCeeEEEEEEccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCcccCCHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999977889999999
Q ss_pred HHHHHHHHHHccHhhhhcc
Q psy210 896 VANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 896 ~~~~~r~~l~~~~e~~~~~ 914 (915)
+++++|++|++|+|++++.
T Consensus 353 ~a~~~~~~l~~y~e~~~li 371 (449)
T TIGR03305 353 LAREVRQTLAQYEELKDII 371 (449)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999963
No 20
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=7.1e-93 Score=805.24 Aligned_cols=417 Identities=22% Similarity=0.297 Sum_probs=380.0
Q ss_pred eeEEEEeec--ChhhcccccccccCCCceEeeEeec-cchhHHHhhcccchhhccccccccCCCcccccCccceeccccc
Q psy210 121 AYNIEYDYF--DPRCLNQTLNIKFANNTVLSGQING-TTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFE 197 (915)
Q Consensus 121 g~~~~~~~~--~p~~L~~~le~~~~~g~~~aGQI~G-t~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~ 197 (915)
|-.++-.+. .+..+++.+.+....+....++|.+ .++ + .+.+++++.+.+++.|++|.++++++++|++++
T Consensus 11 g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~--~----~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~ 84 (463)
T PRK09280 11 GPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGD--G----VVRTIAMGSTDGLVRGMEVIDTGAPISVPVGKA 84 (463)
T ss_pred ccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecC--C----eEEEEEecCccCCCCCCEEEeCCCceEEEcChh
Confidence 344555554 2448899998831212236679998 765 2 346789999999999999999999999999999
Q ss_pred cceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHH
Q psy210 198 LLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDT 277 (915)
Q Consensus 198 lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~ 277 (915)
+|||++|++|+|||+++++....+||++.++|+|++|..+++||.||||+||.|+|||+|||++|||++|+|||+| +.+
T Consensus 85 lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~L-l~~ 163 (463)
T PRK09280 85 TLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL-IQE 163 (463)
T ss_pred hcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHH-HHH
Confidence 9999999999999999888777789999999999999999999999999999999999999999999999999999 555
Q ss_pred HHh-hc-CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHh-cCCcEEEE
Q psy210 278 IIN-QK-NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD-LGQDCLII 354 (915)
Q Consensus 278 i~~-~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~-~g~~Vlv~ 354 (915)
|++ ++ +.+.+|||++||||++||.+|++++.+.++++||++|++|+|+||.+|++++|+|+|+|||||+ +|+|||++
T Consensus 164 i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll 243 (463)
T PRK09280 164 LINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLF 243 (463)
T ss_pred HHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 554 42 3345589999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred eccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcc
Q psy210 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFI 434 (915)
Q Consensus 355 ~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi 434 (915)
+|||||||+|+||||+++||||+++|||||+|+.||+|+||||+.. +||||+||+|++|+||++|||
T Consensus 244 ~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~~-------------~GSITai~tVl~~gdD~~dPI 310 (463)
T PRK09280 244 IDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK-------------KGSITSVQAVYVPADDLTDPA 310 (463)
T ss_pred ecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCCC-------------CCceeEEEEEECcCCCCCCcc
Confidence 9999999999999999999999999999999999999999999741 799999999999999999999
Q ss_pred ccccccccCcEEEeehhhhhcCCCCeeeecCCccccc-cccccHHHHHHHHHHHHHHHhhHHHHhhhhcc--CCCCHHHH
Q psy210 435 PTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVG-GAAQYKIVKKLSGDIRIMLAQYRELESFSKFS--SDLDIVTK 511 (915)
Q Consensus 435 ~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~-~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG--~~ld~~~~ 511 (915)
+|++++|+||||+|||+||++||||||||+.|+||+| ...+.++|++++.++|+.|++|+|++++++++ ..+++.++
T Consensus 311 ~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~i~gy~~~sd~~d 390 (463)
T PRK09280 311 PATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDK 390 (463)
T ss_pred hHhhhhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCccCCHHHH
Confidence 9999999999999999999999999999999999999 45667999999999999999999999999875 36777799
Q ss_pred HHHHhHHHHHHHhhcCC----------CCCccHHHHHHHHHHHhcccccccchhhH
Q psy210 512 TQLYNGEKISLLMKQKP----------HENYSIVELIIILLIIKNRFFFKIPIKQI 557 (915)
Q Consensus 512 ~~L~~~~~i~~fL~Q~~----------~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev 557 (915)
++++++++|++||+|+. .+..++++++..|..+.+|-++++|..+.
T Consensus 391 ~ai~~~~~i~~fL~Q~~~~~~~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~ 446 (463)
T PRK09280 391 LTVARARKIQRFLSQPFFVAEQFTGSPGKYVPLKDTIRGFKEILEGEYDHLPEQAF 446 (463)
T ss_pred HHHHhhHHHHHhccCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 99999999999999999 99999999999999999999999987654
No 21
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.4e-92 Score=797.53 Aligned_cols=394 Identities=26% Similarity=0.365 Sum_probs=373.6
Q ss_pred ChhhcccccccccC-CCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCce
Q psy210 130 DPRCLNQTLNIKFA-NNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGE 208 (915)
Q Consensus 130 ~p~~L~~~le~~~~-~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~ 208 (915)
....+++.+++... .+.-..|+|.|+++ +. +.+++++.+.+++.|++|.+||+++++|+|+++||||+|++|+
T Consensus 40 ~~~~~ge~~~i~~~~~~~~~~~eVv~~~~--~~----~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~lLGRV~d~~G~ 113 (439)
T PRK06936 40 PGVRIGELCYLRNPDNSLSLQAEVIGFAQ--HQ----ALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQ 113 (439)
T ss_pred CCCCCCCEEEEecCCCCcceEEEEEEEEC--Ce----EEEEecCCCCCCCCCCEEEeCCCceEEEeCccccCCEECCCCC
Confidence 35689999998643 23247889999998 33 3788999999999999999999999999999999999999999
Q ss_pred eecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEE
Q psy210 209 FIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288 (915)
Q Consensus 209 PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~ 288 (915)
|||+++++....+++++.++|||++|..+++||+|||++||.++|+++|||++|||++|+|||+| +.+|+++.++++ |
T Consensus 114 plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStL-l~~Ia~~~~~dv-~ 191 (439)
T PRK06936 114 PFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTL-LASLIRSAEVDV-T 191 (439)
T ss_pred ccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChHHH-HHHHhcCCCCCE-E
Confidence 99999888777778999999999999999999999999999999999999999999999999999 899999999997 8
Q ss_pred EEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHH
Q psy210 289 IYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368 (915)
Q Consensus 289 V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~rei 368 (915)
||++||||+||+.+|++...+...++||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++|||||||+|+|||
T Consensus 192 V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REi 271 (439)
T PRK06936 192 VLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREI 271 (439)
T ss_pred EEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHH
Confidence 99999999999999998866666699999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEe
Q psy210 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFL 448 (915)
Q Consensus 369 s~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~L 448 (915)
|+++||||+++||||++|+.||+|+||||+.+ +||||+||+|++|+||++|||||+++||+||||+|
T Consensus 272 sl~~gepP~~~gyp~svfs~l~~l~ERaG~~~-------------~GSIT~i~tVl~~gdD~~dpI~d~~~silDGhIvL 338 (439)
T PRK06936 272 GLAAGEPPTRRGYPPSVFAALPRLMERAGQSD-------------KGSITALYTVLVEGDDMTEPVADETRSILDGHIIL 338 (439)
T ss_pred HHhcCCCCccccCCccHHHHHHHHHHhhccCC-------------CcceeeeEEEEccCCCCCcchHHHhhhhcceEEEE
Confidence 99999999999999999999999999999741 79999999999999999999999999999999999
Q ss_pred ehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHHHhHHHHHHHhh
Q psy210 449 DTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQLYNGEKISLLMK 525 (915)
Q Consensus 449 sr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L~~~~~i~~fL~ 525 (915)
||+||++||||||||+.|+||+|+.++.++|++++.++|+.|++|+|+++++++|. ++|+++|+++.++++|++||+
T Consensus 339 sr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~iG~y~~g~d~~~d~ai~~~~~i~~fL~ 418 (439)
T PRK06936 339 SRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELLAKYEEVELLLQIGEYQKGQDKEADQAIERIGAIRGFLR 418 (439)
T ss_pred CHHHHhCCCCCccCCcccccccchhhCCHHHHHHHHHHHHHHHcchHHHHHHHhcCccCCCCHHHHHHHHhHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999995 899999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHH
Q psy210 526 QKPHENYSIVELIIILLII 544 (915)
Q Consensus 526 Q~~~e~~s~ee~l~~L~ai 544 (915)
|+.+++.++++++..|..+
T Consensus 419 Q~~~~~~~~~~~~~~l~~~ 437 (439)
T PRK06936 419 QGTHELSHFNETLNLLETL 437 (439)
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999854
No 22
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=1.7e-92 Score=805.55 Aligned_cols=415 Identities=21% Similarity=0.279 Sum_probs=382.8
Q ss_pred eeEEEEeecCh--hhcccccccccCCCceEeeEeecc-chhHHHhhcccchhhccccccccCCCcccccCccceeccccc
Q psy210 121 AYNIEYDYFDP--RCLNQTLNIKFANNTVLSGQINGT-TGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFE 197 (915)
Q Consensus 121 g~~~~~~~~~p--~~L~~~le~~~~~g~~~aGQI~Gt-~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~ 197 (915)
|..++...... ..+++.+.++..++. ..++|.+. .+ + -+.+++++.+.+++.|++|.+|++++++|+|++
T Consensus 11 g~vi~v~g~~~~~~~ige~~~i~~~~~~-~~~eVv~~l~~--~----~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~ 83 (461)
T PRK12597 11 GDVVDVEFEEGALPPINQALTVHDDGGP-TLLEVKQHLDE--T----TVRAIALGSTSGLARGDEVRNTGGPIEVPVGEA 83 (461)
T ss_pred CcEEEEEECCCCCcCccCEEEEecCCCc-EEEEEEEEcCC--C----eEEEEEecCccCCCCCCEEEeCCCceEEEcChh
Confidence 45666666643 789999998643444 67799998 54 2 246788999999999999999999999999999
Q ss_pred cceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHH
Q psy210 198 LLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDT 277 (915)
Q Consensus 198 lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~ 277 (915)
+||||+|++|+|||+.+++....+++++.++|||++|.++++||+||||+||.|+|||+|||+||||++|+|||+| +.+
T Consensus 84 llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~L-l~~ 162 (461)
T PRK12597 84 VLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVL-MME 162 (461)
T ss_pred hcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHH-HHH
Confidence 9999999999999999887776789999999999999999999999999999999999999999999999999999 556
Q ss_pred HHhhc---CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhc-CCcEEE
Q psy210 278 IINQK---NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL-GQDCLI 353 (915)
Q Consensus 278 i~~~~---~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~-g~~Vlv 353 (915)
|+++. +++ +|||++||||+|||.+|++++++.++++||++|++++|+||.+|++++|+|+|+|||||++ |+|||+
T Consensus 163 ~~~~~~~~~~d-v~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl 241 (461)
T PRK12597 163 LIFNISKQHSG-SSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRDEEKEDVLL 241 (461)
T ss_pred HHHHHHhhCCC-EEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 55542 255 4899999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred EeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCc
Q psy210 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSF 433 (915)
Q Consensus 354 ~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~p 433 (915)
++|||||||+|+||||+++||||+++||||++|+.+++|+||||+. ++||||+||+|++|+||++||
T Consensus 242 ~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~-------------~~GSIT~i~tVl~~~dD~~dP 308 (461)
T PRK12597 242 FIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIAST-------------KNGSITSIQAVYVPADDLTDP 308 (461)
T ss_pred EeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCC-------------CCccccEEEEEEecCCCCCCc
Confidence 9999999999999999999999999999999999999999999863 179999999999999999999
Q ss_pred cccccccccCcEEEeehhhhhcCCCCeeeecCCccccc-cccccHHHHHHHHHHHHHHHhhHHHHhhhhcc--CCCCHHH
Q psy210 434 IPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVG-GAAQYKIVKKLSGDIRIMLAQYRELESFSKFS--SDLDIVT 510 (915)
Q Consensus 434 i~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~-~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG--~~ld~~~ 510 (915)
|||++++|+||||+|||+||++||||||||+.|+||++ .....++|++++.++|+.|++|+|++++++++ ..+|+++
T Consensus 309 I~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~r~~la~y~e~e~li~i~gy~~l~~~~ 388 (461)
T PRK12597 309 AAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSAED 388 (461)
T ss_pred cHHHHHhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHHhhhhHHHHHHHcCCccCCHHH
Confidence 99999999999999999999999999999999999999 66778999999999999999999999999965 3799999
Q ss_pred HHHHHhHHHHHHHhhcCC----------CCCccHHHHHHHHHHHhcccccccchhhH
Q psy210 511 KTQLYNGEKISLLMKQKP----------HENYSIVELIIILLIIKNRFFFKIPIKQI 557 (915)
Q Consensus 511 ~~~L~~~~~i~~fL~Q~~----------~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev 557 (915)
+++++++++|++||+|+. .++.++++++..++.+.+|-++.+|..+.
T Consensus 389 d~~i~~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~ 445 (461)
T PRK12597 389 KIIVKRARQLQRFLTQPFFVTEAFTGEPGVSVPLEETLDSCERILNGEYDDWSEESF 445 (461)
T ss_pred HHHHHhHHHHHHHhCCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 999999999999999999 78999999999999999999999987654
No 23
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.9e-92 Score=794.02 Aligned_cols=394 Identities=24% Similarity=0.346 Sum_probs=372.5
Q ss_pred hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceee
Q psy210 131 PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFI 210 (915)
Q Consensus 131 p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~Pi 210 (915)
+..+++.+.+...++. ..+||.|++| + .+.+++++.+.+++.|++|.++|+++++|+|+++||||+|++|+||
T Consensus 43 ~~~ige~~~i~~~~~~-~~~EVv~~~~--~----~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRVid~~G~pl 115 (444)
T PRK08972 43 RAPVGSLCSIETMAGE-LEAEVVGFDG--D----LLYLMPIEELRGVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPL 115 (444)
T ss_pred CCCCCCEEEEecCCCc-EEEEEEEecC--C----EEEEEECCCcCCCCCCCEEEECCCccEEEcChhhcCCeECCCCCCc
Confidence 3678999988432343 6779999998 2 3478899999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEE
Q psy210 211 DNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIY 290 (915)
Q Consensus 211 D~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~ 290 (915)
|+++++....+++++.++|||++|.++++||+|||++||.++|+++|||++|||++|+||||| +.+|+++...++ +|+
T Consensus 116 D~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTL-L~~I~~~~~~dv-~Vi 193 (444)
T PRK08972 116 DGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVL-LGMMTRGTTADV-IVV 193 (444)
T ss_pred CCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhHH-HHHhccCCCCCE-EEE
Confidence 999888777788999999999999999999999999999999999999999999999999999 799998888887 456
Q ss_pred EeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHh
Q psy210 291 VCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISL 370 (915)
Q Consensus 291 ~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~ 370 (915)
++||||++||.+|++++.+.+.++|||+|++|+|+||.+|+++||+|+|+||||||+|+|||+++|||||||+|+||||+
T Consensus 194 ~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIsl 273 (444)
T PRK08972 194 GLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIAL 273 (444)
T ss_pred EEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHHH
Confidence 99999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEeeh
Q psy210 371 LLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDT 450 (915)
Q Consensus 371 ~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr 450 (915)
++||||+++||||++|+.||+|+||||+... ++||||+||+|++|+||++|||||+++||+||||||||
T Consensus 274 ~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~-----------~~GSITai~tVl~~gdD~~dpI~d~~~silDGhIvLsr 342 (444)
T PRK08972 274 AVGEPPATKGYPPSVFAKLPALVERAGNGGP-----------GQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSR 342 (444)
T ss_pred hcCCCCccccCCchHHHHhHHHHHHhcCCCC-----------CCceeeeEEEEEEeCCCCCcchHHhhhhhcceEEEEcH
Confidence 9999999999999999999999999998632 27999999999999999999999999999999999999
Q ss_pred hhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHHhHHHHHHHhhcC
Q psy210 451 NLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLYNGEKISLLMKQK 527 (915)
Q Consensus 451 ~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~~~~~i~~fL~Q~ 527 (915)
+||++||||||||+.|+||+|+.++.++|+++|.++|+.|++|+|+++++++| .++|+++|++|+++++|++||+|+
T Consensus 343 ~La~~g~yPAIDvl~S~SR~~~~i~~~~h~~~a~~~r~~ls~y~~~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fl~Q~ 422 (444)
T PRK08972 343 ELADSGHYPAIDIEASISRVMPMVISEEHLEAMRRVKQVYSLYQQNRDLISIGAYKQGSDPRIDNAIRLQPAMNAFLQQT 422 (444)
T ss_pred HHHhCCCCCeeCCccccccCchhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHhhHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999987 599999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHH
Q psy210 528 PHENYSIVELIIILLII 544 (915)
Q Consensus 528 ~~e~~s~ee~l~~L~ai 544 (915)
.+++.++++++..|..+
T Consensus 423 ~~~~~~~~~~~~~l~~~ 439 (444)
T PRK08972 423 MKEAVPYDMSVNMLKQL 439 (444)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999854
No 24
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=5.6e-93 Score=809.45 Aligned_cols=337 Identities=62% Similarity=0.993 Sum_probs=327.7
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
...||+..++++.+++++++++.||+.|+.|..+++++++|+|+++||||+|++|+|||+.+++...++||++..+||++
T Consensus 39 ~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~ 118 (461)
T PRK12597 39 TLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLA 118 (461)
T ss_pred EEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcChhhcCCEEeeccccccCCCCCCCcceeeccCCCcChh
Confidence 44577755599999999999999999999999999999999999999999999999999998877777899999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|.+++++|+||||+||+|+|||||||+||||++|+|||+|+.|+++|++++|+|++||++||||+|||+||++++++++
T Consensus 119 ~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~ 198 (461)
T PRK12597 119 EQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESG 198 (461)
T ss_pred hcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC-CCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~ 816 (915)
+++||++|++|||+||.+|++++|+|+++||||||+ |+||||++||+||||+|+||||+++||||+++||||++|++|+
T Consensus 199 ~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~ 278 (461)
T PRK12597 199 VLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVA 278 (461)
T ss_pred CcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHH
Q psy210 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKV 896 (915)
Q Consensus 817 ~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~ 896 (915)
+|+||+++.++||||+||||++|+||++|||+|++++||||||+|||+||++||||||||++|+||+|++.+++++|+++
T Consensus 279 ~l~ERag~~~~GSIT~i~tVl~~~dD~~dPI~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~ 358 (461)
T PRK12597 279 ELQERIASTKNGSITSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVGERHYDA 358 (461)
T ss_pred HHHHhhcCCCCccccEEEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999778999999999
Q ss_pred HHHHHHHHHccHhhhhcc
Q psy210 897 ANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 897 ~~~~r~~l~~~~e~~~~~ 914 (915)
++++|++|++|+|+|+|.
T Consensus 359 a~~~r~~la~y~e~e~li 376 (461)
T PRK12597 359 AIEVKRILQRYKELEDVI 376 (461)
T ss_pred HHHHHHHHHhhhhHHHHH
Confidence 999999999999999975
No 25
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.2e-92 Score=794.78 Aligned_cols=406 Identities=23% Similarity=0.301 Sum_probs=378.6
Q ss_pred eeEEEEeecC-hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccc
Q psy210 121 AYNIEYDYFD-PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELL 199 (915)
Q Consensus 121 g~~~~~~~~~-p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lL 199 (915)
|..++..... ...+++.++++..++....|||.+.++ + .+.+++++.+.|++.|++|.++++++++|+++++|
T Consensus 26 g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~--~----~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~ll 99 (442)
T PRK08927 26 GLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRG--D----RALLMPFGPLEGVRRGCRAVIANAAAAVRPSRAWL 99 (442)
T ss_pred ccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcC--C----eEEEEEccCccCCCCCCEEEeCCCccEEECChhhC
Confidence 4566666663 458999999976455347889999998 3 24788999999999999999999999999999999
Q ss_pred eeEeCCCceeecCCCccccc-ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHH
Q psy210 200 GRIVNSKGEFIDNKKKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTI 278 (915)
Q Consensus 200 GrviD~lG~PiD~~~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i 278 (915)
|||+|++|+|||+++++... .+++++.+||||++|..+++||+||||+||.|+|+++|||++|||++|+|||+| +++|
T Consensus 100 GRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTtL-L~~I 178 (442)
T PRK08927 100 GRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVL-LSML 178 (442)
T ss_pred CCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHHHH-HHHH
Confidence 99999999999999877664 578999999999999999999999999999999999999999999999999999 7999
Q ss_pred HhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccc
Q psy210 279 INQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDL 358 (915)
Q Consensus 279 ~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddl 358 (915)
+++.+.++ +||++||||+||+.+|+++..+...++|||+|++++|+||.+|+++||+|+|+||||||+|+|||+++|||
T Consensus 179 ~~~~~~d~-~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 179 ARNADADV-SVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HhccCCCE-EEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 99988887 56899999999999999865555559999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccccc
Q psy210 359 TKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNV 438 (915)
Q Consensus 359 tr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~ 438 (915)
||||+|+||||+++||||+++||||++|+.||+|+||||+... ++||||+||+|++|+||++|||||++
T Consensus 258 Tr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~-----------~~GSIT~i~tVlv~gdD~~dpi~d~~ 326 (442)
T PRK08927 258 TRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPI-----------GEGTITGLFTVLVDGDDHNEPVADAV 326 (442)
T ss_pred HHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCCC-----------CCeeeeeeeeeEccCCCCCCchhhhh
Confidence 9999999999999999999999999999999999999998632 27999999999999999999999999
Q ss_pred ccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHHH
Q psy210 439 ISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQLY 515 (915)
Q Consensus 439 ~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L~ 515 (915)
++|+||||+|||+||++||||||||+.|+||+|++++.++|++++..+|++|++|+|+++++++|. +.|+++|++++
T Consensus 327 ~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~edli~lg~y~~g~d~~~d~ai~ 406 (442)
T PRK08927 327 RGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRRARQLMATYADMEELIRLGAYRAGSDPEVDEAIR 406 (442)
T ss_pred hccccEEEEEcHHHHhCCCCCccCCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999984 99999999999
Q ss_pred hHHHHHHHhhcCCCCCccHHHHHHHHHHHh
Q psy210 516 NGEKISLLMKQKPHENYSIVELIIILLIIK 545 (915)
Q Consensus 516 ~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~ 545 (915)
++++|++||+|+.+++.++++++..||.+.
T Consensus 407 ~~~~i~~fL~Q~~~e~~~~~~~~~~l~~l~ 436 (442)
T PRK08927 407 LNPALEAFLRQGKDEATSLAEGYARLAQIL 436 (442)
T ss_pred ccHHHHHhcCCCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999754
No 26
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=6.8e-92 Score=790.73 Aligned_cols=409 Identities=18% Similarity=0.202 Sum_probs=379.7
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
-.++..+ ....+++.+++...++ ...|||.++++ + -+.+++|+.+.|++.|++|.+||+++++|+|+++|||
T Consensus 14 ~~v~v~~-~~~~~ge~~~i~~~~~-~~~geVi~~~~--~----~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg~~lLGR 85 (436)
T PRK02118 14 NVITVEA-EGVGYGELATVERKDG-SSLAQVIRLDG--D----KVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGR 85 (436)
T ss_pred cEEEEEe-CCCCCCCEEEEEcCCC-CEEEEEEEEcC--C----EEEEEEecCCcCCCCCCEEEeCCCceEEEcCccccCC
Confidence 3444555 2357889998865455 47889999987 3 3578899999999999999999999999999999999
Q ss_pred EeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 202 IVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 202 viD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
|+|++|+|||+++++.. ..++++++||||++|.++++||+|||++||.|+|||||||+||||++|+|||+| +.+|++|
T Consensus 86 V~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L-~~~ia~~ 163 (436)
T PRK02118 86 RFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNAL-LARIALQ 163 (436)
T ss_pred EEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHH-HHHHHHh
Confidence 99999999999877654 348999999999999999999999999999999999999999999999999999 8999999
Q ss_pred cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcC-CcEEEEeccchh
Q psy210 282 KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLG-QDCLIIYDDLTK 360 (915)
Q Consensus 282 ~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g-~~Vlv~~Ddltr 360 (915)
++.++ +||++||||.+|+.+|++++++.++++||++|++++|+||.+|+++|++|+|+|||||++| +|||+++|||||
T Consensus 164 ~~~~v-~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd~g~~~VLli~DdlTr 242 (436)
T PRK02118 164 AEADI-IILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTN 242 (436)
T ss_pred hCCCe-EEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEeccCchH
Confidence 99897 7899999999999999999999999999999999999999999999999999999999987 999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccccccc
Q psy210 361 HAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVIS 440 (915)
Q Consensus 361 ~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~ 440 (915)
||+|+||||+++||||+++|||||||+.+++|+||||++++ +||||++|+|++|+||++|||||+++|
T Consensus 243 ~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~~------------~GSITai~~V~~p~DD~tdPi~d~~~s 310 (436)
T PRK02118 243 FADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFED------------GGSITIIAVTTMPGDDVTHPVPDNTGY 310 (436)
T ss_pred HHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCC------------CeeEEEEEEEEcCCCCcCccHHHHHHH
Confidence 99999999999999999999999999999999999998742 699999999999999999999999999
Q ss_pred ccCcEEEeehhhhhcCCCCeeeecCCcccccccccc----HHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHh
Q psy210 441 ITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQY----KIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYN 516 (915)
Q Consensus 441 i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~----~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~ 516 (915)
||||||||||+| |||+.|+||+|+.++. ++|+++|.++|+.|++|+|+++++++|.+|+++|++++++
T Consensus 311 ilDGqIvLsR~l--------ID~l~S~SRl~~~v~g~~t~~~h~~~a~~l~~~~a~y~e~~dli~iG~eLs~~d~~~l~~ 382 (436)
T PRK02118 311 ITEGQFYLRRGR--------IDPFGSLSRLKQLVIGKKTREDHGDLMNAMIRLYADSREAKEKMAMGFKLSNWDEKLLKF 382 (436)
T ss_pred hcCcEEEecccc--------ccCccccccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHH
Confidence 999999999999 9999999999987766 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Q psy210 517 GEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIK 566 (915)
Q Consensus 517 ~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~ 566 (915)
+++|++||-|.+ +.++++++++..| .+|+.+|.+++..+..++++
T Consensus 383 ~~~~e~~~~~~g-~~~~~~etl~~~~----~~l~~~~~~~~~~~~~~~~~ 427 (436)
T PRK02118 383 SELFESRLMDLE-VNIPLEEALDLGW----KILAQCFHPEEVGIKEQLID 427 (436)
T ss_pred HHHHHHHhhcCC-CcccHHHHHHHHH----HHHHHCCHHHHhcCCHHHHH
Confidence 999987555544 8899999999999 56899999999999988775
No 27
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=3e-92 Score=801.46 Aligned_cols=337 Identities=64% Similarity=1.004 Sum_probs=321.4
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
...||+...+.+.+++++|++++||+.|++|..+++++++|+|+++||||+|++|+|||+++++...+++|++..+|+++
T Consensus 57 ~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~ 136 (494)
T CHL00060 57 VTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFI 136 (494)
T ss_pred EEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCCCcceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCch
Confidence 34577655555999999999999999999999999999999999999999999999999998877777889999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|.+++++|+||||+||+|+|||||||+||||++|+|||+|+.|+++|+++.++|++||++||||+|||+||++++++.+
T Consensus 137 ~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~ 216 (494)
T CHL00060 137 QLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESG 216 (494)
T ss_pred hcccccceeecCceeeeccCCcccCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999987666799999999999999999999998855
Q ss_pred c-------cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCC-cEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcc
Q psy210 738 V-------LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGK-DVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP 809 (915)
Q Consensus 738 ~-------~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~-~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~ 809 (915)
+ ++||++|++|||+||.+|+++||+|+++||||||+|+ ||||+|||+||||+|+||||+++||||+++||||
T Consensus 217 ~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPp 296 (494)
T CHL00060 217 VINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQP 296 (494)
T ss_pred ccccCcccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCC
Confidence 4 5589999999999999999999999999999999976 9999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCC
Q psy210 810 TLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIV 889 (915)
Q Consensus 810 ~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~ 889 (915)
|+|+.|++|+||+|+.++||||+||||++++||++|||+|++++||||||||||+||++||||||||+.|+||++.+.++
T Consensus 297 svfs~l~~LlERaG~~~~GSITai~tVl~~gdD~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~v 376 (494)
T CHL00060 297 TLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIV 376 (494)
T ss_pred CHHHHhHHHHHhccCCCCCCeeEEEEEECCCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhcccccC
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999557899
Q ss_pred CHHHHHHHHHHHHHHHccHhhhhcc
Q psy210 890 GEEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 890 ~~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
+++|+++++++|++|++|+|+|++.
T Consensus 377 ~~~h~~~a~~~r~~la~y~e~e~li 401 (494)
T CHL00060 377 GEEHYETAQRVKQTLQRYKELQDII 401 (494)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999974
No 28
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=2e-90 Score=788.48 Aligned_cols=331 Identities=25% Similarity=0.404 Sum_probs=317.4
Q ss_pred hhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccc
Q psy210 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQI 660 (915)
Q Consensus 581 ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~ 660 (915)
..+.+|+++.+.+++|+++.||+.|+.|..||+++++|||+++||||+|++|+|+|+++++...++||++.++|++++|.
T Consensus 61 g~Vi~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~ 140 (497)
T TIGR03324 61 GIAFNVDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRA 140 (497)
T ss_pred EEEEEEcCCeEEEEEecCCcCCcCCCEEEECCCCCeEECCHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccC
Confidence 35579999999999999999999999999999999999999999999999999999999887778899999999999999
Q ss_pred cccccccccceeeecccccccCCeeeeccCCCCChhhH-HHHHHHHHHhcCCcE-EEEEEecCCCchHHHHHHHhhhcCc
Q psy210 661 FNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVN-MMELIRNIAIEHKGC-SVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 661 ~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~L-l~~i~~~~~~~~~~~-~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
++++|++||||+||+|+|||||||+||||++|+|||+| +.+|+++. +.|+ |||++||||++||.+|+++++++++
T Consensus 141 ~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~Lal~~I~~q~---~~dv~~V~~~IGeR~rev~e~i~~l~~~~~ 217 (497)
T TIGR03324 141 PVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQK---GRNVLCIYCAIGQRASAVAKVVANLREHGA 217 (497)
T ss_pred CCCchhhcCCEEEeccCCcccCCEEEeecCCCCCHHHHHHHHHHHhc---CCCcEEEEEEeccCcHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999 45666653 2465 9999999999999999999999999
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l 818 (915)
|+||++|++|+|+||.+|+++||+|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|
T Consensus 218 l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srL 297 (497)
T TIGR03324 218 MDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRL 297 (497)
T ss_pred cceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC--C--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHH
Q psy210 819 QERISS--T--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHY 894 (915)
Q Consensus 819 ~ERag~--~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~ 894 (915)
+||+|+ . ++||||+||+|++++||++|||||++++||||||||||+||++||||||||+.|+||+|. .++.++|+
T Consensus 298 lERag~~~~~~~~GSITal~~V~~~~dD~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~-~~~~~~~~ 376 (497)
T TIGR03324 298 LERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGG-KAQLAAYR 376 (497)
T ss_pred HHhhhhccCCCCCcceeEEEEEEcCCCCCCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCc-cccCHHHH
Confidence 999997 3 589999999999999999999999999999999999999999999999999999999994 77899999
Q ss_pred HHHHHHHHHHHccHhhhhccC
Q psy210 895 KVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 895 ~~~~~~r~~l~~~~e~~~~~~ 915 (915)
+++.++|+.|++|+|++++++
T Consensus 377 ~~a~~lr~~la~y~e~e~~~~ 397 (497)
T TIGR03324 377 AVAGDLKLAYAQFEELETFAR 397 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999863
No 29
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=2.9e-90 Score=787.80 Aligned_cols=333 Identities=26% Similarity=0.418 Sum_probs=317.9
Q ss_pred hhhccccceeeeccccCccCcccCCe-EEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccc
Q psy210 582 VQQQIGENIVRTIAFGNTNGIKRNTI-VVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQI 660 (915)
Q Consensus 582 v~~~l~~~~v~l~~~~~~~gl~~G~~-V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~ 660 (915)
.+..|+++.+.+++|+++.||+.|+. |..||+++++|+|+++||||+|++|+|||+++++....++|+++.+|++++|.
T Consensus 40 eVv~~~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~ 119 (458)
T TIGR01041 40 QVLDSSEGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYARE 119 (458)
T ss_pred EEEEEECCEEEEEEecCCcCcCCCCcEEEECCCceEEEcChhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcC
Confidence 44689999999999999999999997 99999999999999999999999999999988887777899999999999999
Q ss_pred cccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhc---CCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 661 FNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE---HKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 661 ~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~---~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+++++++||||+||+|+|||||||+||||++|+|||+|+.||+++...+ +..+|||++||||+|||+||++++++++
T Consensus 120 ~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~ 199 (458)
T TIGR01041 120 YPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETG 199 (458)
T ss_pred CCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999987542 2238999999999999999999999999
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHH-HCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~-~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~ 816 (915)
+|+|||+|++|||+||.+|+++||+|+|+||||| |+|+|||+++||+||||+|+||||+++||||+++|||||+|+.|+
T Consensus 200 ~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~ 279 (458)
T TIGR01041 200 ALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLA 279 (458)
T ss_pred CcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhH
Confidence 9999999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCC----CCCC
Q psy210 817 KLQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDP----YIVG 890 (915)
Q Consensus 817 ~l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~----~~~~ 890 (915)
+|+||||+. ++||||+||||++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+|+. .+++
T Consensus 280 ~LlERaG~~~~~~GSITai~tV~~~gdD~~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~~ 359 (458)
T TIGR01041 280 TIYERAGRVKGKKGSITQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTR 359 (458)
T ss_pred HHHHhcccCCCCCcceEEEEEEEcCCCCCCCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccccC
Confidence 999999986 6899999999999999999999999999999999999999999999999999999999964 2688
Q ss_pred HHHHHHHHHHHHHHHccHhhhhcc
Q psy210 891 EEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 891 ~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
++|++++++++..|+++++|+++.
T Consensus 360 ~~~~~~a~~l~~~y~~~~~L~~i~ 383 (458)
T TIGR01041 360 EDHKDVSDQLYAAYAEGRDLRGLV 383 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 30
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.3e-89 Score=775.67 Aligned_cols=395 Identities=22% Similarity=0.354 Sum_probs=373.6
Q ss_pred hhhcccccccccCCCc---eEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCc
Q psy210 131 PRCLNQTLNIKFANNT---VLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKG 207 (915)
Q Consensus 131 p~~L~~~le~~~~~g~---~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG 207 (915)
+..+++.+.+...++. ...|+|.+.++ + .+.+++++.+.+++.|++|.++++++++|+|+++||||+|++|
T Consensus 45 ~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~--~----~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRV~d~~G 118 (451)
T PRK05688 45 RAAVGSRCLVINDDSYHPVQVEAEVMGFSG--D----KVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAG 118 (451)
T ss_pred CCCCCCEEEEecCCCccccceEEEEEEEcC--C----EEEEEEccCccCCCCCCEEEECCCccEEEecccccCCEEeccC
Confidence 4789999998443441 36779999987 3 3588899999999999999999999999999999999999999
Q ss_pred eeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeE
Q psy210 208 EFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287 (915)
Q Consensus 208 ~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~ 287 (915)
+|||+++++....+++++.+||||+.|.++++||+|||++||.|+|+++|||++|||++|+|||+| +++|+++.+.++
T Consensus 119 ~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTL-l~~I~g~~~~dv- 196 (451)
T PRK05688 119 RALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVL-LGMMTRFTEADI- 196 (451)
T ss_pred ceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCE-
Confidence 999999888777778999999999999999999999999999999999999999999999999999 799998887776
Q ss_pred EEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHH
Q psy210 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQ 367 (915)
Q Consensus 288 ~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~re 367 (915)
+|+++||+|++|+.+|++.+.+.+.++|+|+|++++|+||.+|++++++|+|+||||||+|+|||++||||||||+|+||
T Consensus 197 ~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~RE 276 (451)
T PRK05688 197 IVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQRE 276 (451)
T ss_pred EEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEE
Q psy210 368 ISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIF 447 (915)
Q Consensus 368 is~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~ 447 (915)
||+++||||+++|||||+|+.||+|+||||+.++ ++||||+||+|++|+||++|||||+++||+|||||
T Consensus 277 isl~~gepP~~~GYp~svfs~l~~l~ERag~~~~-----------~~GSITai~tVl~~gdD~~dpI~d~~~silDGhIv 345 (451)
T PRK05688 277 IALAIGEPPATKGYPPSVFAKLPKLVERAGNAEP-----------GGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIV 345 (451)
T ss_pred HHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCC-----------CCceeeEEEEEEecCCCCCCchHHHHHhhccEEEE
Confidence 9999999999999999999999999999998632 16999999999999999999999999999999999
Q ss_pred eehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHHhHHHHHHHh
Q psy210 448 LDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLYNGEKISLLM 524 (915)
Q Consensus 448 Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~~~~~i~~fL 524 (915)
|||+||++||||||||+.|+||+|+.++.++|++++.++|++|++|+++++++++| .++|+++|+++++++++++||
T Consensus 346 Lsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~~~~dli~~g~y~~g~d~~~d~ai~~~~~i~~fL 425 (451)
T PRK05688 346 LSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPHLVQFL 425 (451)
T ss_pred EcHHHHhCCCCCccCCccccCccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987 499999999999999999999
Q ss_pred hcCCCCCccHHHHHHHHHHH
Q psy210 525 KQKPHENYSIVELIIILLII 544 (915)
Q Consensus 525 ~Q~~~e~~s~ee~l~~L~ai 544 (915)
+|+.+|+.++++++..|..+
T Consensus 426 ~Q~~~e~~~~~~~~~~l~~~ 445 (451)
T PRK05688 426 RQGLRENVSLAQSREQLAAI 445 (451)
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999864
No 31
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=8.1e-90 Score=786.72 Aligned_cols=332 Identities=29% Similarity=0.458 Sum_probs=318.4
Q ss_pred hhhccccceeeeccccCccCcc-cCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccc
Q psy210 582 VQQQIGENIVRTIAFGNTNGIK-RNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQI 660 (915)
Q Consensus 582 v~~~l~~~~v~l~~~~~~~gl~-~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~ 660 (915)
.+..|+++.+.+++|+++.||+ .|++|..||+++++|+|+++||||+|++|+|+|+++++....++|+++.+|++++|.
T Consensus 42 eVi~~~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~ 121 (460)
T PRK04196 42 QVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVARE 121 (460)
T ss_pred EEEEEeCCeEEEEEccCCCCCCCCCCEEEeCCCccEEEcCcccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcC
Confidence 4468999999999999999999 899999999999999999999999999999999998887777889999999999999
Q ss_pred cccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcC---CcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 661 FNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH---KGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 661 ~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~---~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+++++++||||+||+|+|||||||+||||++|+|||+|+.||+++...++ ..+|||++||||+|||+||++++++.+
T Consensus 122 ~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~ 201 (460)
T PRK04196 122 YPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETG 201 (460)
T ss_pred CCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999875421 238999999999999999999999999
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHH-HCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~-~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~ 816 (915)
+|+|||+|++|||+||.+|+++||+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.|+
T Consensus 202 ~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~ 281 (460)
T PRK04196 202 ALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLA 281 (460)
T ss_pred CcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhH
Confidence 9999999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCC----
Q psy210 817 KLQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVG---- 890 (915)
Q Consensus 817 ~l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~---- 890 (915)
+|+||||+. ++||||+||||++++||++|||+|++++||||||+|||+||++||||||||+.|+||+|+ .+++
T Consensus 282 ~LlERaG~~~~~~GSITai~~V~~~gdD~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~-~~~~~~~~ 360 (460)
T PRK04196 282 TIYERAGRIKGKKGSITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMK-DGIGEGKT 360 (460)
T ss_pred HHHHHhhcCCCCCeeeEEEEEEEcCCCCCCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhcc-ccCCcccC
Confidence 999999986 689999999999999999999999999999999999999999999999999999999995 5678
Q ss_pred -HHHHHHHHHHHHHHHccHhhhhcc
Q psy210 891 -EEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 891 -~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
++|++++++++..|++|+|++++.
T Consensus 361 ~~~~~~~a~~l~~~y~~~~~l~~~~ 385 (460)
T PRK04196 361 REDHKDVANQLYAAYARGKDLRELA 385 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875
No 32
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=2.2e-89 Score=769.96 Aligned_cols=335 Identities=21% Similarity=0.319 Sum_probs=315.7
Q ss_pred hhhhhccccc-eeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCC------CCCCCC-CCCccCC
Q psy210 580 NKVQQQIGEN-IVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNK------GEINSK-KKSPIHT 651 (915)
Q Consensus 580 ~ev~~~l~~~-~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~------~~~~~~-~~~pi~~ 651 (915)
..++.+++++ .+.+++|+++.||+.|+.|+.||+++++|||+++||||+|++|+|||++ +++... .++|++.
T Consensus 79 ~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~ 158 (574)
T PTZ00185 79 AGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDA 158 (574)
T ss_pred EEEEEEecCCCeEEEEEecCccCCCCCCEEEECCCccEEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccC
Confidence 4677899999 6999999999999999999999999999999999999999999999987 444444 4679999
Q ss_pred CCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHH-HHHHHHHHh------cCCcEEEEEEecCCCc
Q psy210 652 LPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNM-MELIRNIAI------EHKGCSVFIGVGERSR 724 (915)
Q Consensus 652 ~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll-~~i~~~~~~------~~~~~~v~~~iGer~~ 724 (915)
.+|++++|.++++|++||||+||+|+|||||||+||||++|+|||+|+ .+|+++... ++.++|||++||||++
T Consensus 159 ~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~r 238 (574)
T PTZ00185 159 GAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCS 238 (574)
T ss_pred CCcChhhcCCCCCcCcCCceeeeccccccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchH
Confidence 999999999999999999999999999999999999999999999995 555554311 2458999999999999
Q ss_pred hHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCC
Q psy210 725 EGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSA 804 (915)
Q Consensus 725 ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~ 804 (915)
||.+++++|+++|+|+||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||++
T Consensus 239 EV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLllgrpPgR 318 (574)
T PTZ00185 239 NVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGR 318 (574)
T ss_pred HHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHhcC----CCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCc
Q psy210 805 VGYQPTLAEEMGKLQERISS----TKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880 (915)
Q Consensus 805 ~gyp~~l~~~l~~l~ERag~----~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~ 880 (915)
+||||++|+.|++|+||||+ .++||||+||+|++++||++|||||+++|||||||+|||+||++|+||||||+.|+
T Consensus 319 egYPgdVF~lhsrLlERAg~l~~~~G~GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~Sv 398 (574)
T PTZ00185 319 EAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSV 398 (574)
T ss_pred CCcCccHHHHhHHHHHhcccccCCCCCcceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccc
Confidence 99999999999999999998 34799999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 881 SR~~~~~~~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
||+++ .++.+.|+++|.++|..|++|+|++.++|
T Consensus 399 SRvg~-~aq~~~~k~vAg~lr~~LaqY~El~~fa~ 432 (574)
T PTZ00185 399 SRVGS-SAQNVAMKAVAGKLKGILAEYRKLAADSV 432 (574)
T ss_pred cccCC-ccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99995 67889999999999999999999999875
No 33
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=4.8e-89 Score=772.05 Aligned_cols=404 Identities=27% Similarity=0.376 Sum_probs=374.6
Q ss_pred eEEEEeecCh-hhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccce
Q psy210 122 YNIEYDYFDP-RCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLG 200 (915)
Q Consensus 122 ~~~~~~~~~p-~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLG 200 (915)
..++..-... ..+++.+++...++....|+|.++++ +. +.+++++.+.+++.|++|.+|++++++|+++++||
T Consensus 9 ~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~--~~----v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~lLG 82 (418)
T TIGR03498 9 LLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNG--DR----VLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLG 82 (418)
T ss_pred cEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcC--Ce----EEEEEccCCcCCCCCCEEEECCCccEEEeChhhcC
Confidence 4444444443 27999999965456457889999997 33 47889999999999999999999999999999999
Q ss_pred eEeCCCceeecCCCccccc-ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHH
Q psy210 201 RIVNSKGEFIDNKKKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTII 279 (915)
Q Consensus 201 rviD~lG~PiD~~~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~ 279 (915)
||+|++|+|||+++++... .+++++..||+|++|.++++||+||+++||.++|+++|||++|||++|+|||+| +++|+
T Consensus 83 RViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtL-l~~I~ 161 (418)
T TIGR03498 83 RVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTL-LSMLA 161 (418)
T ss_pred CEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHH-HHHHh
Confidence 9999999999998877555 458999999999999999999999999999999999999999999999999999 78999
Q ss_pred hhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccch
Q psy210 280 NQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLT 359 (915)
Q Consensus 280 ~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddlt 359 (915)
++...+. .+++++|+|++|+.+|+++..+.+.++||++|++++|+||.+|+++||+|||+|||||++|+|||+++||||
T Consensus 162 ~~~~~~~-gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 162 RNTDADV-VVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred CCCCCCE-EEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 8877776 578999999999999999876666799999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccc
Q psy210 360 KHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVI 439 (915)
Q Consensus 360 r~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~ 439 (915)
|||+|+||||+++||||+++||||++|+.||+|+||||+... ++||||+||+|++|+||++|||||+++
T Consensus 241 r~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~~-----------~~GSIT~~~tVl~~gdd~~dpi~d~~~ 309 (418)
T TIGR03498 241 RFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAE-----------GKGSITGIFTVLVDGDDHNEPVADAVR 309 (418)
T ss_pred HHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCCC-----------CCcceeeeEEEeccCCCCCCcchhhhh
Confidence 999999999999999999999999999999999999998521 279999999999999999999999999
Q ss_pred cccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHHHh
Q psy210 440 SITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQLYN 516 (915)
Q Consensus 440 ~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L~~ 516 (915)
|||||||+|||+||++||||||||+.|+||+|+.++.++|++++.++|++|++|+|+++++++|. ++|+++|+++++
T Consensus 310 si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~~~~~g~y~~g~d~~~d~ai~~ 389 (418)
T TIGR03498 310 GILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDEAIRL 389 (418)
T ss_pred eeeeeEEEECHHHHhCCCCCccCCcccccccchhhcCHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999984 899999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 517 GEKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 517 ~~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
+++|++||+|+.+++.++++++..|..+
T Consensus 390 ~~~i~~fl~Q~~~~~~~~~~~~~~l~~~ 417 (418)
T TIGR03498 390 VPKIYEFLTQGPDEPTSLQDPFADLAAI 417 (418)
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHhh
Confidence 9999999999999999999999988753
No 34
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=1.6e-89 Score=777.79 Aligned_cols=334 Identities=24% Similarity=0.348 Sum_probs=317.0
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
...+.+++++.+.+++|+++.||+.|++|+.||+++++|+|+++||||+|++|+|+|+++++....++|++.++|++++|
T Consensus 39 ~g~vi~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R 118 (485)
T CHL00059 39 IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISR 118 (485)
T ss_pred EEEEEEEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcCHhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhc
Confidence 34668999999999999999999999999999999999999999999999999999999888777788999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCcc
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVL 739 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~ 739 (915)
.++++||+||||+||+|+|||||||+||||++|+|||+|+.+++.|++ ++..+|||++||||++||++|+++++++++|
T Consensus 119 ~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~Lal~~I~~q~-~~dv~cV~~~IGer~rev~e~~~~l~~~~~l 197 (485)
T CHL00059 119 RSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQK-GQNVICVYVAIGQKASSVAQVVTTLQERGAM 197 (485)
T ss_pred cCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHHHHHHHhcc-cCCeEEEEEEecCCchHHHHHHHHhhcccch
Confidence 999999999999999999999999999999999999999444444443 2223569999999999999999999999999
Q ss_pred ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHH
Q psy210 740 DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819 (915)
Q Consensus 740 ~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ 819 (915)
+||++|++|+|+||.+|+++||+|+++|||||++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+
T Consensus 198 ~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLl 277 (485)
T CHL00059 198 EYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 277 (485)
T ss_pred hceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHH
Q psy210 820 ERISST----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895 (915)
Q Consensus 820 ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~ 895 (915)
||+|+. ++||||+||+|++++||++|||||++++||||||+|||+||++||||||||+.|+||+| +.++.++|++
T Consensus 278 ERag~~~~~~~~GSITal~~V~~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg-~~aq~~~~~~ 356 (485)
T CHL00059 278 ERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVG-SAAQIKAMKQ 356 (485)
T ss_pred HhhhcccCCCCCcceEEEEEEEccCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCcccchhcCC-chhhcHHHHH
Confidence 999976 58999999999999999999999999999999999999999999999999999999999 4788899999
Q ss_pred HHHHHHHHHHccHhhhhccC
Q psy210 896 VANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 896 ~~~~~r~~l~~~~e~~~~~~ 915 (915)
++.++|..|++|+|++++++
T Consensus 357 ~a~~lr~~la~y~e~e~~~~ 376 (485)
T CHL00059 357 VAGKLKLELAQFAELEAFAQ 376 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864
No 35
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.5e-89 Score=774.87 Aligned_cols=331 Identities=32% Similarity=0.483 Sum_probs=318.8
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccc
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSN 658 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~ 658 (915)
..|+ ..|.++.+.+++|++++||+.|++|+.||+++++|+|++|||||+|++|+|+|+++++....++|+++.+|+|++
T Consensus 60 ~~eV-v~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~ 138 (439)
T PRK06936 60 QAEV-IGFAQHQALLTPLGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMS 138 (439)
T ss_pred EEEE-EEEECCeEEEEecCCCCCCCCCCEEEeCCCceEEEeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHH
Confidence 3455 589999999999999999999999999999999999999999999999999999988877778899999999999
Q ss_pred cccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 659 QIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 659 r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
|.+++++++|||++||.++|+++|||++|||++|+|||+|+.+|+++.. ++++||++||||+|||+||+++..+++.
T Consensus 139 R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~---~dv~V~~liGERgrEv~ef~~~~l~~~~ 215 (439)
T PRK06936 139 RRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAE---VDVTVLALIGERGREVREFIESDLGEEG 215 (439)
T ss_pred ccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCCC---CCEEEEEEEccCcHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999998754 5899999999999999999987666666
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l 818 (915)
|+|||+|++|||+||.+|++++|+|+++||||||+|||||+++||+||||+|+||||+++||||+++||||++|+.|++|
T Consensus 216 l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l 295 (439)
T PRK06936 216 LRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRL 295 (439)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHH
Q psy210 819 QERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVAN 898 (915)
Q Consensus 819 ~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~ 898 (915)
+||+|+.++||||+||||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+ .+++++|+++++
T Consensus 296 ~ERaG~~~~GSIT~i~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~-~~~~~~~~~~a~ 374 (439)
T PRK06936 296 MERAGQSDKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMN-QIVSKEHKTWAG 374 (439)
T ss_pred HHhhccCCCcceeeeEEEEccCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccch-hhCCHHHHHHHH
Confidence 9999998999999999999999999999999999999999999999999999999999999999995 889999999999
Q ss_pred HHHHHHHccHhhhhcc
Q psy210 899 EVKFYLQKYKELKDTS 914 (915)
Q Consensus 899 ~~r~~l~~~~e~~~~~ 914 (915)
++|++|++|+|+|++.
T Consensus 375 ~~r~~la~y~e~e~li 390 (439)
T PRK06936 375 RLRELLAKYEEVELLL 390 (439)
T ss_pred HHHHHHHcchHHHHHH
Confidence 9999999999999986
No 36
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=9.3e-89 Score=770.91 Aligned_cols=391 Identities=26% Similarity=0.361 Sum_probs=372.7
Q ss_pred cChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCce
Q psy210 129 FDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGE 208 (915)
Q Consensus 129 ~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~ 208 (915)
.....+++.+++.. ++ ..|+|.++++ +. +.+++++.+.+++.|++|.++|+++++++++++||||+|++|+
T Consensus 45 ~~~~~~ge~~~i~~-~~--~~~eVv~~~~--~~----~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~~llGrv~d~~G~ 115 (440)
T PRK06820 45 LPGVAQGELCRIEP-QG--MLAEVVSIEQ--EM----ALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGA 115 (440)
T ss_pred ECCCCcCCEEEEec-CC--eEEEEEEEeC--Ce----EEEEEccCccCCCCCCEEEECCCCcEEEechhhcCCEECccCC
Confidence 45678999999854 45 6789999998 32 4788999999999999999999999999999999999999999
Q ss_pred eecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEE
Q psy210 209 FIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288 (915)
Q Consensus 209 PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~ 288 (915)
|||++++. ...+++++..+|||+.|.++++||.|||++||.|+|+++|||++|||++|+|||+| +++|+++.+.++ +
T Consensus 116 pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStL-l~~I~~~~~~dv-~ 192 (440)
T PRK06820 116 PIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTL-LGMLCADSAADV-M 192 (440)
T ss_pred ccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChHHH-HHHHhccCCCCE-E
Confidence 99998765 45677999999999999999999999999999999999999999999999999999 789999988887 6
Q ss_pred EEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHH
Q psy210 289 IYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368 (915)
Q Consensus 289 V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~rei 368 (915)
||++||||++|+.+|++.+.+.+.+.++++|++++|+||.+|++++|+|+|+||||||+|+|||+++|||||||+|+|||
T Consensus 193 V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REi 272 (440)
T PRK06820 193 VLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREI 272 (440)
T ss_pred EEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEe
Q psy210 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFL 448 (915)
Q Consensus 369 s~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~L 448 (915)
|+++||||+++||||++|+.||+|+||||+.. +||||+||+|++|+||++|||||++++|+||||+|
T Consensus 273 sl~~gepP~~~GYP~~vf~~l~~L~ERag~~~-------------~GSIT~i~tVl~~gdD~~dpI~d~~~~ilDg~ivL 339 (440)
T PRK06820 273 GLAAGEPPAAGSFPPSVFANLPRLLERTGNSD-------------RGSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVL 339 (440)
T ss_pred HHhcCCCCccccCCccHHHHHHHHHHhhccCC-------------CcceeEEEEEEccCCCCCCcchhhhccccceEEEE
Confidence 99999999999999999999999999999852 79999999999999999999999999999999999
Q ss_pred ehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHHHhHHHHHHHhh
Q psy210 449 DTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQLYNGEKISLLMK 525 (915)
Q Consensus 449 sr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L~~~~~i~~fL~ 525 (915)
||+||++||||||||+.|+||+++.++.++|++++..+|++|++|+|+++|+++|+ ++|+++|+++.+++++++||+
T Consensus 340 sr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~G~y~~g~d~~~d~~i~~~~~i~~fL~ 419 (440)
T PRK06820 340 SRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEIELLVRVGEYQAGEDLQADEALQRYPAICAFLQ 419 (440)
T ss_pred CHHHHhCCCCCccCCcccccccchhhCCHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCCCHHHHHHHHhhHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999995 899999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHH
Q psy210 526 QKPHENYSIVELIIILLII 544 (915)
Q Consensus 526 Q~~~e~~s~ee~l~~L~ai 544 (915)
|+.+|+++++++++.||.+
T Consensus 420 Q~~~e~~~~~~~~~~l~~~ 438 (440)
T PRK06820 420 QDHSETAHLETTLEHLAQV 438 (440)
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999965
No 37
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.1e-88 Score=769.62 Aligned_cols=401 Identities=25% Similarity=0.385 Sum_probs=377.2
Q ss_pred eeEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccce
Q psy210 121 AYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLG 200 (915)
Q Consensus 121 g~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLG 200 (915)
|..++-... ...+++.++++..+|....|+|.++++ + -+.+++++.+.+++.|+.|.+||+++++|+++.+||
T Consensus 8 g~~v~v~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~--~----~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llG 80 (411)
T TIGR03496 8 GLVLEAVGL-RAPVGSRCEIESSDGDPIEAEVVGFRG--D----RVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLG 80 (411)
T ss_pred CcEEEEEeC-CCCcCCEEEEEcCCCCeEEEEEEEecC--C----EEEEEEccCccCCCCCCEEEECCCccEEEcchhhcC
Confidence 345555555 568899999864456567889999987 3 347889999999999999999999999999999999
Q ss_pred eEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 201 RIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 201 rviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
||+|++|+|||+.+++....+|+++.+||||++|..+++++.||+++||.++|+++|||++|||++|+|||+| +++|++
T Consensus 81 rVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtL-l~~I~~ 159 (411)
T TIGR03496 81 RVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTL-LGMMAR 159 (411)
T ss_pred CEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHH-HHHHhc
Confidence 9999999999999887777789999999999999999999999999999999999999999999999999999 799999
Q ss_pred hcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchh
Q psy210 281 QKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTK 360 (915)
Q Consensus 281 ~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr 360 (915)
+...++ +||++||+|++|+.+|++++.+.++++||++|++|+|+||.+|+++||+|||+|||||++|+|||+++|||||
T Consensus 160 ~~~~~~-~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 160 YTEADV-VVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred CCCCCE-EEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 888886 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccccccc
Q psy210 361 HAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVIS 440 (915)
Q Consensus 361 ~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~ 440 (915)
||+|+||||+++||||+++||||++|+.||+|+||||+++. ++||||+||+|++|+||++|||||++++
T Consensus 239 ~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~-----------~~GSIT~~~tv~~~~dd~~dpi~~~~~~ 307 (411)
T TIGR03496 239 FAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEE-----------GKGSITAFYTVLVEGDDQQDPIADAARA 307 (411)
T ss_pred HHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccCC-----------CCcceeEEEEEEccCCCCCCcchhhhcc
Confidence 99999999999999999999999999999999999999732 2799999999999999999999999999
Q ss_pred ccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHHhH
Q psy210 441 ITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLYNG 517 (915)
Q Consensus 441 i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~~~ 517 (915)
|+||||+|||+||++||||||||+.|+||+++.++.++|++++.++|++|++|+|+++++++| .++|+++|++++++
T Consensus 308 i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~l~~~g~y~~g~d~~~d~~i~~~ 387 (411)
T TIGR03496 308 ILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQAIALY 387 (411)
T ss_pred cccEEEEEchhHHhCCCCCccCCCcccccchhhhCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 48999999999999
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHH
Q psy210 518 EKISLLMKQKPHENYSIVELIIIL 541 (915)
Q Consensus 518 ~~i~~fL~Q~~~e~~s~ee~l~~L 541 (915)
++|++||+|+.+++.+++++++.|
T Consensus 388 ~~i~~fl~Q~~~~~~~~~~~~~~l 411 (411)
T TIGR03496 388 PRIEAFLQQGMRERASFEESLEAL 411 (411)
T ss_pred HHHHHHhCCCCCCCCCHHHHHhhC
Confidence 999999999999999999998653
No 38
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.9e-88 Score=769.76 Aligned_cols=393 Identities=27% Similarity=0.385 Sum_probs=373.7
Q ss_pred hhhcccccccccCCCce-EeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCcee
Q psy210 131 PRCLNQTLNIKFANNTV-LSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEF 209 (915)
Q Consensus 131 p~~L~~~le~~~~~g~~-~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~P 209 (915)
...+++.+++...+|.. ..|+|.++++ + .+.+++|+.+.+++.|++|.+||+++++|+|+++||||+|++|+|
T Consensus 42 ~~~~ge~~~i~~~~g~~~~~~eVv~~~~--~----~~~l~~~~~t~gi~~g~~V~~tg~~~~v~vg~~lLGrV~d~~G~p 115 (441)
T PRK09099 42 DVTLGELCELRQRDGTLLQRAEVVGFSR--D----VALLSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEP 115 (441)
T ss_pred CCCCCCEEEEecCCCCeeeEEEEEEEEC--C----EEEEEEccCCcCCCCCCEEEeCCCccEEEeccccccCEEcccCCc
Confidence 37899999985445553 6789999998 3 347889999999999999999999999999999999999999999
Q ss_pred ecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEE
Q psy210 210 IDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICI 289 (915)
Q Consensus 210 iD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V 289 (915)
||+++++....+++++..||||++|..+++||+||+++||.++|+++|||++|||++|+|||+| +++|+.+...+. +|
T Consensus 116 iD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtL-l~~ia~~~~~d~-~v 193 (441)
T PRK09099 116 IDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTL-MGMFARGTQCDV-NV 193 (441)
T ss_pred cCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHHHH-HHHHhCCCCCCe-EE
Confidence 9999887766778999999999999999999999999999999999999999999999999999 799998877776 78
Q ss_pred EEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHH
Q psy210 290 YVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQIS 369 (915)
Q Consensus 290 ~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis 369 (915)
|++||||++|+.+|++.+.+.+.++|+++|++++|+||.+|++++|+|+|+||||||+|+|||+++|||||||+|+||||
T Consensus 194 i~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REis 273 (441)
T PRK09099 194 IALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIG 273 (441)
T ss_pred EEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEee
Q psy210 370 LLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLD 449 (915)
Q Consensus 370 ~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Ls 449 (915)
+++||||+++||||++|+.||+|+||||..+ +||||+||+|++++||++|||||++++|+||||+||
T Consensus 274 l~~gepP~~~gyP~~vf~~l~~l~ERag~~~-------------~GSIT~i~tVl~~~dd~~dpI~d~~~~i~DG~ivLs 340 (441)
T PRK09099 274 LAAGEPPARRGFPPSVFAELPRLLERAGMGE-------------TGSITALYTVLAEDESGSDPIAEEVRGILDGHMILS 340 (441)
T ss_pred HhcCCCCccccCCccHHHHhHHHHHhhcCCC-------------CcchheeEEEEecCCCcCCcchhhhheecceEEEEc
Confidence 9999999999999999999999999999531 799999999999999999999999999999999999
Q ss_pred hhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHHhHHHHHHHhhc
Q psy210 450 TNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLYNGEKISLLMKQ 526 (915)
Q Consensus 450 r~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~~~~~i~~fL~Q 526 (915)
|+||++||||||||+.|+||+|+.++.++|++++.++|+.|++|+|+++++++| .++|++.+++++++++|++||+|
T Consensus 341 r~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~lr~~la~y~e~e~li~iG~y~~g~d~~~d~~i~~~~~i~~fL~Q 420 (441)
T PRK09099 341 REIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGSDPVADEAIAKIDAIRDFLSQ 420 (441)
T ss_pred HHHHhCCCCCccCCccccCccchhcCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999998 49999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHH
Q psy210 527 KPHENYSIVELIIILLII 544 (915)
Q Consensus 527 ~~~e~~s~ee~l~~L~ai 544 (915)
+.+++.++++++..|..+
T Consensus 421 ~~~~~~~~~~t~~~l~~~ 438 (441)
T PRK09099 421 RTDEYSDPDATLAALAEL 438 (441)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 999999999999998864
No 39
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1e-88 Score=781.82 Aligned_cols=404 Identities=23% Similarity=0.287 Sum_probs=365.8
Q ss_pred EEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeE
Q psy210 123 NIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRI 202 (915)
Q Consensus 123 ~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrv 202 (915)
.++-...+...+++.+++. +..+.|+|.+++| + ...+++++++.|++.|++|.+||+++++++|+++||||
T Consensus 11 vv~a~g~~~~~~gE~v~v~---~~~l~gEVi~~~~--d----~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpglLGrV 81 (578)
T TIGR01043 11 LVVADGMKGAQMYEVVKVG---EEGLIGEIIRIEG--D----KAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGSI 81 (578)
T ss_pred EEEEecCCCCCcCCEEEEC---CCcEEEEEEEEcC--C----eEEEEECCCCCCCCCCCEEEECCCccEEEcCHHHhcce
Confidence 3444444446788888884 2236899999998 3 33788999999999999999999999999999999999
Q ss_pred eCCCceeecCCCc----c----------cc--------------------------------------------------
Q psy210 203 VNSKGEFIDNKKK----F----------LI-------------------------------------------------- 218 (915)
Q Consensus 203 iD~lG~PiD~~~~----~----------~~-------------------------------------------------- 218 (915)
+|++|+|||+.++ . ..
T Consensus 82 ~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~~ 161 (578)
T TIGR01043 82 YDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIAE 161 (578)
T ss_pred eccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceEEEecc
Confidence 9999999998631 1 10
Q ss_pred -----------------------cccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHH
Q psy210 219 -----------------------KNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAI 275 (915)
Q Consensus 219 -----------------------~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l 275 (915)
.++||+.. |+++++|.++++||.||||+||+|+|||||||++|||++|||||+| +
T Consensus 162 ~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT~l-~ 239 (578)
T TIGR01043 162 EGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVT-Q 239 (578)
T ss_pred CCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCHHHH-H
Confidence 12568866 7789999999999999999999999999999999999999999999 8
Q ss_pred HHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhc-------cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcC
Q psy210 276 DTIINQKNKNVICIYVCIGQKISSLINVINKLKY-------YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLG 348 (915)
Q Consensus 276 ~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g 348 (915)
++|+++.++|+ |||++||||++|+++|++++.+ .++|+|||+|+||||+|+++|++++|+|+|+||||||+|
T Consensus 240 ~~lak~~~adi-vVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfRD~G 318 (578)
T TIGR01043 240 HQLAKWSDADI-VVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMG 318 (578)
T ss_pred HHHHhcCCCCE-EEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999998886 8999999999999999999954 668999999999999999999999999999999999999
Q ss_pred CcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCC
Q psy210 349 QDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEG 428 (915)
Q Consensus 349 ~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~ 428 (915)
+|||+++||+||||+|+||||+++||||+++|||+|+|+.++++|||||+++...| .+++||||++++|++|+|
T Consensus 319 ~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~------~~r~GSIT~i~aVs~~gg 392 (578)
T TIGR01043 319 YDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGG------EERVGSVTVIGAVSPPGG 392 (578)
T ss_pred CCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCC------CCCCccEeEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999864222 134799999999999999
Q ss_pred CCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccccccc-------ccHHHHHHHHHHHHHHHhhHHHHhhhh
Q psy210 429 DVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA-------QYKIVKKLSGDIRIMLAQYRELESFSK 501 (915)
Q Consensus 429 d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~-------~~~~~~~~a~~lr~~la~~~e~e~l~~ 501 (915)
|++|||++++++|+||||+|||+||++||||||||+.|+||++... ..++|.+++.+++.+|++|+|++++++
T Consensus 393 D~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~ 472 (578)
T TIGR01043 393 DFSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQ 472 (578)
T ss_pred CCCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999887 789999999999999999999999999
Q ss_pred c-cC-CCCHHHHHHHHhHHHHH-HHhhcCCCCCc----cHHHHHHHHHHH
Q psy210 502 F-SS-DLDIVTKTQLYNGEKIS-LLMKQKPHENY----SIVELIIILLII 544 (915)
Q Consensus 502 l-G~-~ld~~~~~~L~~~~~i~-~fL~Q~~~e~~----s~ee~l~~L~ai 544 (915)
+ |. .+++.++..+++++.++ .||+|+.++++ ++++++..|..+
T Consensus 473 lvG~d~L~~~d~~il~~a~~i~e~FLqQ~~~~~~d~~~~~~k~~~~L~~i 522 (578)
T TIGR01043 473 LVGPDALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAI 522 (578)
T ss_pred ccCCCCCCHHHHHHHHHhHHHHHhhCCCCCCCCccCCCCHHHHHHHHHHH
Confidence 9 75 59999999999999985 89999997777 999999988874
No 40
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=6.3e-89 Score=784.53 Aligned_cols=333 Identities=25% Similarity=0.413 Sum_probs=317.6
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccc
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSN 658 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~ 658 (915)
+...+.+++++.+.+++|+++.||+.|+.|..+|+++++|+|+++||||+|++|+|+|+++++...+++|++..+|++++
T Consensus 59 ~~g~Vi~~~~~~~~~~~~~~~~gi~~g~~V~~~~~~~~v~vg~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~ 138 (502)
T PRK09281 59 VYGIALNLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVID 138 (502)
T ss_pred cEEEEEEEcCCeEEEEEecCcccccCCCeeeecCCceEEecCHHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccc
Confidence 34466799999999999999999999999999999999999999999999999999999988888888999999999999
Q ss_pred cccccccccccceeeecccccccCCeeeeccCCCCChhhH-HHHHHHHHHhcCCcE-EEEEEecCCCchHHHHHHHhhhc
Q psy210 659 QIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVN-MMELIRNIAIEHKGC-SVFIGVGERSREGNDFYHEMKES 736 (915)
Q Consensus 659 r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~L-l~~i~~~~~~~~~~~-~v~~~iGer~~ev~e~~~~~~~~ 736 (915)
|.+++++++||||+||+|+|||||||++|||++|+|||+| +.+|++ ++ +.|+ |||++||||++|++||+++++++
T Consensus 139 R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~lal~~i~~-~~--~~dv~~V~~~IGer~~ev~e~~~~~~~~ 215 (502)
T PRK09281 139 RKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QK--GKDVICIYVAIGQKASTVAQVVRKLEEH 215 (502)
T ss_pred cCCccceeecCCeeeecccccccCcEEEeecCCCCCchHHHHHHHHH-hc--CCCeEEEEEEecCChHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999 555554 43 2455 79999999999999999999999
Q ss_pred CccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHH
Q psy210 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816 (915)
Q Consensus 737 ~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~ 816 (915)
++|+||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|+
T Consensus 216 ~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s 295 (502)
T PRK09281 216 GAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHS 295 (502)
T ss_pred CCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHH
Q psy210 817 KLQERISST----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEE 892 (915)
Q Consensus 817 ~l~ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~ 892 (915)
+|+||+|+. ++||||+||+|++|+||++|||||++++||||||||||+||++||||||||+.|+||+|+ .++.++
T Consensus 296 ~LlERag~~~~~~~~GSITal~~V~~~~dD~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~-~~~~~~ 374 (502)
T PRK09281 296 RLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGG-AAQIKA 374 (502)
T ss_pred HHHHHhhhccCCCCCccEEEEEEEECCCCCCCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCC-ccCCHH
Confidence 999999975 689999999999999999999999999999999999999999999999999999999995 677899
Q ss_pred HHHHHHHHHHHHHccHhhhhccC
Q psy210 893 HYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 893 ~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
|+++++++|++|++|+|++++++
T Consensus 375 ~~~~a~~lr~~la~y~e~~~l~~ 397 (502)
T PRK09281 375 MKKVAGTLRLDLAQYRELEAFAQ 397 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999863
No 41
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=5.2e-89 Score=780.32 Aligned_cols=332 Identities=25% Similarity=0.409 Sum_probs=318.1
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
...+.+|+++.+.+++|+++.||+.|+.|+.||+++++|+|+++||||+|++|+|||+++++...+++|++..+|++++|
T Consensus 60 ~g~V~~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R 139 (502)
T PRK13343 60 RGFAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIER 139 (502)
T ss_pred EEEEEEecCCeEEEEEeeCCCCCCCCCEeEecCCcceeecCHHhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhc
Confidence 44668999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhH-HHHHHHHHHhcCCcE-EEEEEecCCCchHHHHHHHhhhcC
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVN-MMELIRNIAIEHKGC-SVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~L-l~~i~~~~~~~~~~~-~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
.++++|++||||+||+|+|||||||++|||++|+|||+| +.+|+++ + +.|+ |||++||||++||+||++++++++
T Consensus 140 ~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt~Lal~~i~~~-~--~~dv~~V~~~IGer~rev~e~~~~l~~~~ 216 (502)
T PRK13343 140 DFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIINQ-K--DSDVICVYVAIGQKASAVARVIETLREHG 216 (502)
T ss_pred CCCCcccccCCceeccccccccCCEEEeeCCCCCCccHHHHHHHHhh-c--CCCEEEEEEEeccChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999 5666654 3 2465 699999999999999999999999
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~ 817 (915)
+|+||+||++|+|+||.+|+++||+|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++
T Consensus 217 ~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~sr 296 (502)
T PRK13343 217 ALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSR 296 (502)
T ss_pred ccceeEEEEecccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHH
Q psy210 818 LQERISST----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEH 893 (915)
Q Consensus 818 l~ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~ 893 (915)
|+||||+. ++||||+||+|++++||++|||||++++||||||+|||+||++||||||||+.|+||+|. .++.++|
T Consensus 297 LlERAg~~~~~~~gGSITal~~V~~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~-~~~~~~~ 375 (502)
T PRK13343 297 LLERAAKLSPELGGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGG-KAQHPAI 375 (502)
T ss_pred HHHhhccCCCCCCCcceEEEEEEEcCCCCCCCcchhhhhcccceEEEECHHHHhCCCCCccCCccchhccCc-cccCHHH
Confidence 99999975 689999999999999999999999999999999999999999999999999999999994 6789999
Q ss_pred HHHHHHHHHHHHccHhhhhccC
Q psy210 894 YKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 894 ~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
++++.++|..|++|+|+|++++
T Consensus 376 ~~~a~~lr~~la~y~e~e~~~~ 397 (502)
T PRK13343 376 RKESGRLRLDYAQFLELEAFTR 397 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999863
No 42
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=2.7e-88 Score=765.85 Aligned_cols=404 Identities=26% Similarity=0.345 Sum_probs=377.1
Q ss_pred eeeecc-eeEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceec
Q psy210 115 SSIIRF-AYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIP 193 (915)
Q Consensus 115 a~~~r~-g~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vp 193 (915)
-++.+. |-.++-. .....+++.+++.. .+ ..|||.++++ +. +.+++|+.+.+++.|++|.+||+++++|
T Consensus 23 G~v~~v~g~~~~~~-~~~~~~ge~~~i~~-~~--~~~eVv~~~~--~~----~~l~~~~~~~gi~~g~~V~~tg~~~~v~ 92 (433)
T PRK07594 23 GRIQDVSATLLNAW-LPGVFMGELCCIKP-GE--ELAEVVGING--SK----ALLSPFTSTIGLHCGQQVMALRRRHQVP 92 (433)
T ss_pred eEEEEEECCEEEEE-ECCcCCCCEEEEec-CC--eEEEEEEEcC--Ce----EEEEEccCCcCCCCCCEEEeCCCccEEE
Confidence 344444 3334443 45678999999854 45 5789999998 33 4788999999999999999999999999
Q ss_pred cccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHH
Q psy210 194 VGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTI 273 (915)
Q Consensus 194 vg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l 273 (915)
+++.+||||+|++|+|||++++. ...+++++..+|||++|..+++|+.||+++||.++|+++|||++|||++|+|||+|
T Consensus 93 vg~~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTL 171 (433)
T PRK07594 93 VGEALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL 171 (433)
T ss_pred eChhhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHH
Confidence 99999999999999999998763 44567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEE
Q psy210 274 AIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353 (915)
Q Consensus 274 ~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv 353 (915)
+++|+++...+. +||++||||++|+.+|++.+.+.+.++++++|++++|+|+.+|++++|+|+|+||||||+|+|||+
T Consensus 172 -L~~I~~~~~~d~-~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl 249 (433)
T PRK07594 172 -LAMLCNAPDADS-NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVL 249 (433)
T ss_pred -HHHhcCCCCCCE-EEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 799999888887 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCc
Q psy210 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSF 433 (915)
Q Consensus 354 ~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~p 433 (915)
++|||||||+|+||||+++||||+++||||++|+.||+|+||||.. . +||||+||+|++|+||++||
T Consensus 250 ~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~-----~--------~GSIT~~~tVl~~gdD~~dp 316 (433)
T PRK07594 250 LADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-----E--------KGSITAFYTVLVEGDDMNEP 316 (433)
T ss_pred EEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCC-----C--------CcchheeeeeeecCCCCCCc
Confidence 9999999999999999999999999999999999999999999953 1 79999999999999999999
Q ss_pred cccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHH
Q psy210 434 IPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVT 510 (915)
Q Consensus 434 i~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~ 510 (915)
|||+++||+||||||||+||++||||||||+.|+||+|+.++.++|+++|.++|+.|++|+|+|+|+++|. ++|+++
T Consensus 317 i~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~~~~~~~~h~~~a~~~r~~la~y~e~e~li~~G~y~~g~d~~~ 396 (433)
T PRK07594 317 LADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGVDTDT 396 (433)
T ss_pred hHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccchhhCCHHHHHHHHHHHHHHHcchHHHHHHHhcCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 999999
Q ss_pred HHHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 511 KTQLYNGEKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 511 ~~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
|++|+++++|++||+|+..|+.++++++..|..+
T Consensus 397 d~ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~ 430 (433)
T PRK07594 397 DKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI 430 (433)
T ss_pred HHHHHhhHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999998854
No 43
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.2e-88 Score=762.48 Aligned_cols=332 Identities=29% Similarity=0.469 Sum_probs=318.8
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
...|| ..|.++.+.+++|+++.||+.|++|..+|+++++|+|+++||||+|++|+|+|+.+++...++||++..+|+|+
T Consensus 59 ~~~EV-v~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~ 137 (444)
T PRK08972 59 LEAEV-VGFDGDLLYLMPIEELRGVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPL 137 (444)
T ss_pred EEEEE-EEecCCEEEEEECCCcCCCCCCCEEEECCCccEEEcChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChh
Confidence 34466 48999999999999999999999999999999999999999999999999999998887777899999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|.+++++++|||++||.++|+++|||++|||++|+|||||+.+|+++. +++++||++||||+|||+||++++.+++
T Consensus 138 ~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~ 214 (444)
T PRK08972 138 SRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGT---TADVIVVGLVGERGREVKEFIEEILGEE 214 (444)
T ss_pred hcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhHHHHHhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999998754 3589999999999999999999988888
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~ 817 (915)
.++|||+|++|||+||.+|++++|+|+++||||||+|+|||++|||+||||+|+||||+++||||+++||||++|+.|++
T Consensus 215 ~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~ 294 (444)
T PRK08972 215 GRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPA 294 (444)
T ss_pred CcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHH
Q psy210 818 LQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895 (915)
Q Consensus 818 l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~ 895 (915)
|+||||+. ++||||+||||++++||++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++++|++
T Consensus 295 L~ERAg~~~~~~GSITai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~-~~i~~~~h~~ 373 (444)
T PRK08972 295 LVERAGNGGPGQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVM-PMVISEEHLE 373 (444)
T ss_pred HHHHhcCCCCCCceeeeEEEEEEeCCCCCcchHHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCc-hhcCcHHHHH
Confidence 99999975 47999999999999999999999999999999999999999999999999999999999 5789999999
Q ss_pred HHHHHHHHHHccHhhhhcc
Q psy210 896 VANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 896 ~~~~~r~~l~~~~e~~~~~ 914 (915)
+++++|++|++|+|+|+|.
T Consensus 374 ~a~~~r~~ls~y~~~e~li 392 (444)
T PRK08972 374 AMRRVKQVYSLYQQNRDLI 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874
No 44
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=2.7e-88 Score=761.70 Aligned_cols=330 Identities=26% Similarity=0.427 Sum_probs=308.9
Q ss_pred hhhccccceeeeccccCccCccc-CCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccc
Q psy210 582 VQQQIGENIVRTIAFGNTNGIKR-NTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQI 660 (915)
Q Consensus 582 v~~~l~~~~v~l~~~~~~~gl~~-G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~ 660 (915)
.+..|+++.+.+++|++++||+. |+.|..+++++++|||+++||||+|++|+|+|+.+++....++|++..+|++++|.
T Consensus 40 eVi~~~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~ 119 (466)
T TIGR01040 40 QVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARI 119 (466)
T ss_pred EEEEEeCCeEEEEEcCCCCCcccCCCEEEECCCccEEEcCcccccCEECccccccCCCCCCCCCceeeccCCCCChhHcC
Confidence 44699999999999999999997 99999999999999999999999999999999998877777789999999999999
Q ss_pred cccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcC---Cc---------EEEEEEecCCCchHHH
Q psy210 661 FNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH---KG---------CSVFIGVGERSREGND 728 (915)
Q Consensus 661 ~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~---~~---------~~v~~~iGer~~ev~e 728 (915)
+++++|+||||+||+|+|||||||+||||++|+|||+|+.||+++....+ +| +|||++|||| +|+.+
T Consensus 120 ~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~e 198 (466)
T TIGR01040 120 YPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METAR 198 (466)
T ss_pred CCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHH
Confidence 99999999999999999999999999999999999999999999864211 23 8999999999 88888
Q ss_pred HHH-HhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHH-HCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCC
Q psy210 729 FYH-EMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVG 806 (915)
Q Consensus 729 ~~~-~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~-~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~g 806 (915)
|+. ++.++++++|||+|++|||+||.+|+++||+|+|+||||| ++|+||||++||+||||+|+||||+++||||+++|
T Consensus 199 fi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~G 278 (466)
T TIGR01040 199 FFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRG 278 (466)
T ss_pred HHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcC
Confidence 766 6888899999999999999999999999999999999999 68999999999999999999999999999999999
Q ss_pred CcchhhHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCccccc
Q psy210 807 YQPTLAEEMGKLQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQL 884 (915)
Q Consensus 807 yp~~l~~~l~~l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~ 884 (915)
|||++|++|++|+||+|+. ++||||+||||++|+||++|||+|++++||||||||||+||++||||||||+.|+||+|
T Consensus 279 YP~svfs~l~~L~ERaG~~~~~~GSITai~tV~~~~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~ 358 (466)
T TIGR01040 279 FPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLM 358 (466)
T ss_pred cCchHHHHHHHHhhccccCCCCCcceEEEEEEECCCCCCCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhcc
Confidence 9999999999999999986 57999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-----HHHHHHHHHHHHHHHccHhhhhc
Q psy210 885 DPYIVG-----EEHYKVANEVKFYLQKYKELKDT 913 (915)
Q Consensus 885 ~~~~~~-----~~~~~~~~~~r~~l~~~~e~~~~ 913 (915)
+ .+++ ++|+++++++.+.|++++++.++
T Consensus 359 ~-~v~~~~~~~~~h~~~a~~l~~~y~~~~~L~~i 391 (466)
T TIGR01040 359 K-SAIGEGMTRKDHSDVSNQLYACYAIGKDVQAM 391 (466)
T ss_pred c-cccccCcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 6677 89999999977777777776664
No 45
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=2.6e-88 Score=779.32 Aligned_cols=331 Identities=26% Similarity=0.432 Sum_probs=316.3
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
..++.+++++.+.+++|+++.||+.|+.|..+|+++++|+|+++||||+|++|+|+|+++++....++|++..+|++++|
T Consensus 59 ~g~Vi~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R 138 (501)
T TIGR00962 59 QGIALNLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMER 138 (501)
T ss_pred EEEEEEecCCeEEEEEecCCcCCCCCCeeEecCCccEEecChHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhc
Confidence 44667999999999999999999999999999999999999999999999999999999888777788999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhH-HHHHHHHHHhcCCcE-EEEEEecCCCchHHHHHHHhhhcC
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVN-MMELIRNIAIEHKGC-SVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~L-l~~i~~~~~~~~~~~-~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
.++++||+||||+||+|+|||||||+||||++|+|||+| +.+|+++ + +.|+ |||++||||++||+||++++++.+
T Consensus 139 ~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt~Lal~~i~~~-~--~~dv~~V~~~IGer~rev~e~~~~~~~~~ 215 (501)
T TIGR00962 139 KSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIINQ-K--DSDVYCVYVAIGQKASTVAQVVRKLEEHG 215 (501)
T ss_pred CCcCceeccCCceeeccCCcccCCEEEeecCCCCCccHHHHHHHHhh-c--CCCeEEEEEEccCChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999 5666654 3 2466 699999999999999999999999
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~ 817 (915)
+|+||++|++|+|+||.+|+++||+|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++
T Consensus 216 ~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~sr 295 (501)
T TIGR00962 216 AMDYTIVVAATASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSR 295 (501)
T ss_pred ccceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHH
Q psy210 818 LQERISST----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEH 893 (915)
Q Consensus 818 l~ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~ 893 (915)
|+||+|+. ++||||++|+|++++||++|||||++++||||||+|||+||++||||||||+.|+||+|+ .++.++|
T Consensus 296 LlERag~~~~~~g~GSITal~~V~~~~dD~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~-~~~~~~~ 374 (501)
T TIGR00962 296 LLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGG-AAQIKAM 374 (501)
T ss_pred HHHHHhhccCCCCCcceEEEEEEECCCCCCCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCc-cccCHHH
Confidence 99999974 379999999999999999999999999999999999999999999999999999999995 6788999
Q ss_pred HHHHHHHHHHHHccHhhhhcc
Q psy210 894 YKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 894 ~~~~~~~r~~l~~~~e~~~~~ 914 (915)
++++.++|.+|++|+|+++++
T Consensus 375 ~~~a~~lr~~la~y~e~~~l~ 395 (501)
T TIGR00962 375 KQVAGSLRLELAQYRELEAFS 395 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 46
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=7.9e-88 Score=765.98 Aligned_cols=329 Identities=21% Similarity=0.256 Sum_probs=312.4
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCC-----CCCCccCCCCC
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINS-----KKKSPIHTLPP 654 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~-----~~~~pi~~~~p 654 (915)
...+.+++++.+.+++|+++.||+.|++|+.||+++++|||+++||||+|++|+|+|+++++.. ...+|++..+|
T Consensus 36 ~g~V~~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap 115 (507)
T PRK07165 36 KAFVISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAH 115 (507)
T ss_pred EEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccccCCEECCCCcccCCCCCCCcccccccccccccCCCC
Confidence 3466799999999999999999999999999999999999999999999999999999987654 45679999999
Q ss_pred CccccccccccccccceeeecccccccCCeeeeccCCCCChhhH-HHHHHHHHHhcCCc-EEEEEEecCCCchHHHHHHH
Q psy210 655 KFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVN-MMELIRNIAIEHKG-CSVFIGVGERSREGNDFYHE 732 (915)
Q Consensus 655 ~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~L-l~~i~~~~~~~~~~-~~v~~~iGer~~ev~e~~~~ 732 (915)
++++|.++++|++||||+||+|+|||||||+||||++|||||+| +.+|++ ++ + .| +|||++||||++||++|+++
T Consensus 116 ~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~lal~~I~~-q~-~-~dv~~V~~~IGer~~ev~~~~~~ 192 (507)
T PRK07165 116 GLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNTIIN-QK-N-TNVKCIYVAIGQKRENLSRIYET 192 (507)
T ss_pred CchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHHHHHHHHH-hc-C-CCeEEEEEEccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 556554 43 2 35 47999999999999999999
Q ss_pred hhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhh
Q psy210 733 MKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLA 812 (915)
Q Consensus 733 ~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~ 812 (915)
++++++|+||++|++|+| ||.+|+++||+|+|+|||||++ +|||+++||+||||+|+||||+++||||+++||||++|
T Consensus 193 l~~~gal~~tvvV~atsd-~~~~r~~ap~~a~tiAEyfrd~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF 270 (507)
T PRK07165 193 LKEHDALKNTIIIDAPST-SPYEQYLAPYVAMAHAENISYN-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMF 270 (507)
T ss_pred hhhcCceeeeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhc-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHH
Confidence 999999999999999985 9999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-CCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCH
Q psy210 813 EEMGKLQERISSTK-NGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGE 891 (915)
Q Consensus 813 ~~l~~l~ERag~~~-~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~ 891 (915)
+.|++|+||||+.. +||||++|+|++++||++|||||+++|||||||||||+||++||||||||+.|+||+|+ .++++
T Consensus 271 ~~~srLlERAg~~~g~GSITalpiV~t~~dDis~pIpdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~-~~q~~ 349 (507)
T PRK07165 271 FAHSKLLERAGKFKNRKTITALPILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGS-SVQSK 349 (507)
T ss_pred HHhHHHHHhccCCCCCCceEEEEEEECCCCCCCCcchhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccc-cccCH
Confidence 99999999999875 79999999999999999999999999999999999999999999999999999999995 78999
Q ss_pred HHHHHHHHHHHHHHccHhhhhcc
Q psy210 892 EHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 892 ~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
.|++++..+|.+|++|+|+++++
T Consensus 350 ~~~~~a~~~r~~la~Y~e~e~~~ 372 (507)
T PRK07165 350 TITKVAGEISKIYRAYKRQLKLS 372 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 47
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=4.1e-87 Score=757.21 Aligned_cols=402 Identities=28% Similarity=0.412 Sum_probs=374.9
Q ss_pred eeEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccce
Q psy210 121 AYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLG 200 (915)
Q Consensus 121 g~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLG 200 (915)
|..++..+. +..+++.+.++..++....|+|.+.++ + .+.+++++.+.+++.|++|.++|+++++|+++++||
T Consensus 8 G~~i~v~~~-~~~ige~~~i~~~~~~~~~~eVi~~~~--~----~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~lLG 80 (413)
T TIGR03497 8 GLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKE--E----NVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLG 80 (413)
T ss_pred CCEEEEEeC-CCCcCCEEEEEeCCCCeEEEEEEEEcC--C----eEEEEEccCccCCCCCCEEEEcCCeeEEEcchhhcC
Confidence 455666655 467888888864334447889999997 3 358889999999999999999999999999999999
Q ss_pred eEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 201 RIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 201 rviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
||+|++|+|||+++++....+++++..||+|++|..+++++.||+++||.++|+++|||++|||++|+|||+| +++|++
T Consensus 81 RVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtL-l~~i~~ 159 (413)
T TIGR03497 81 RVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTL-LGMIAR 159 (413)
T ss_pred CEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHH-HHHHhC
Confidence 9999999999998887777788999999999999999999999999999999999999999999999999999 799999
Q ss_pred hcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchh
Q psy210 281 QKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTK 360 (915)
Q Consensus 281 ~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr 360 (915)
+.+.+. .++++||||++|+.+|+++..+...++|+++|++++|+||.+|+++|++|||+|||||++|+|||+++|||||
T Consensus 160 ~~~~~~-gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 160 NAKADI-NVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred CCCCCe-EEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence 888776 5789999999999999998555556999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccccccc
Q psy210 361 HAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVIS 440 (915)
Q Consensus 361 ~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~ 440 (915)
||+|+||||+++||||+++||||++|+.||+|+||||+. + +||||+||+|++|+||++|||||+++|
T Consensus 239 ~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~----~---------~GSIT~~~tVl~~gdD~~dpi~~~~~s 305 (413)
T TIGR03497 239 FAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNS----Q---------KGSITGFYTVLVDGDDMNEPIADAVRG 305 (413)
T ss_pred HHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcCC----C---------CcceeEEEEEEccCCCCCCcchhhccc
Confidence 999999999999999999999999999999999999982 1 799999999999999999999999999
Q ss_pred ccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHHhH
Q psy210 441 ITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLYNG 517 (915)
Q Consensus 441 i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~~~ 517 (915)
|+||||+|||+||++||||||||+.|+||+++.++.++|++++.++|+.|++|+|+++++++| .+.|++++++++++
T Consensus 306 i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~~~~g~d~~~~~~i~~~ 385 (413)
T TIGR03497 306 ILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYI 385 (413)
T ss_pred cccEEEEECHHHHhCCCCCccCCccccccCccccCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 37899999999999
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 518 EKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 518 ~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
+++++||+|+.+|++++++++..|..+
T Consensus 386 ~~i~~fl~Q~~~~~~~~~~~~~~l~~~ 412 (413)
T TIGR03497 386 EKINSFLKQGIDEKFTFEETVQLLKTL 412 (413)
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999988753
No 48
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.1e-87 Score=760.15 Aligned_cols=331 Identities=30% Similarity=0.494 Sum_probs=315.4
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCC-CCCccCCCCCCcc
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSK-KKSPIHTLPPKFS 657 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~-~~~pi~~~~p~~~ 657 (915)
..+| ..++++.+++++|+++.||+.|++|+.+|+++++|+|+++||||+|++|+|||+++++... .++|+++.+|+++
T Consensus 55 ~~eV-v~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~ 133 (442)
T PRK08927 55 PCEV-VGFRGDRALLMPFGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAH 133 (442)
T ss_pred EEEE-EEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEECChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChH
Confidence 3455 5889999999999999999999999999999999999999999999999999999877654 5789999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|.+++++++||||+||+|+|+++|||++|||++|+|||+|+.+|+++.. ++++||++||||+|||+||+++..++.
T Consensus 134 ~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~---~d~~v~~~iGER~rEv~ef~~~~l~~~ 210 (442)
T PRK08927 134 SRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD---ADVSVIGLIGERGREVQEFLQDDLGPE 210 (442)
T ss_pred HcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCEEEEEEEecCcHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999998753 578899999999999999998665555
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~ 817 (915)
.++|||+|++|||+||.+|++++++|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|++|++
T Consensus 211 ~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~ 290 (442)
T PRK08927 211 GLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPR 290 (442)
T ss_pred CceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHH
Q psy210 818 LQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895 (915)
Q Consensus 818 l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~ 895 (915)
|+||+|+. ++||||+||||++|+||++|||+|++++|+||||||||+||++||||||||+.|+||+| +.+++++|++
T Consensus 291 l~ERaG~~~~~~GSIT~i~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~-~~~~~~~~~~ 369 (442)
T PRK08927 291 LLERAGPGPIGEGTITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTM-PGCNDPEENP 369 (442)
T ss_pred HHHHhcCCCCCCeeeeeeeeeEccCCCCCCchhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccc-cccCCHHHHH
Confidence 99999984 58999999999999999999999999999999999999999999999999999999999 6889999999
Q ss_pred HHHHHHHHHHccHhhhhcc
Q psy210 896 VANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 896 ~~~~~r~~l~~~~e~~~~~ 914 (915)
.++++|++|++|+|+|++.
T Consensus 370 ~a~~~r~~l~~y~e~edli 388 (442)
T PRK08927 370 LVRRARQLMATYADMEELI 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985
No 49
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.6e-87 Score=754.69 Aligned_cols=402 Identities=27% Similarity=0.363 Sum_probs=374.1
Q ss_pred eeEEEEeecChhhcccccccccCC-CceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccc
Q psy210 121 AYNIEYDYFDPRCLNQTLNIKFAN-NTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELL 199 (915)
Q Consensus 121 g~~~~~~~~~p~~L~~~le~~~~~-g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lL 199 (915)
|..++.+-+. ..+++.+++...+ +-...|+|.++++ + .+.+++++.+.+++.|++|.++++++++|+++++|
T Consensus 27 g~~v~~~g~~-~~~ge~~~i~~~~~~~~~~~eVv~~~~--~----~~~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~ll 99 (434)
T PRK08472 27 PTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVIEK--E----QFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLL 99 (434)
T ss_pred ccEEEEEecC-CCCCCEEEEecCCCCCceEEEEEEEeC--C----eEEEEEccCCCCCCCCCEEEeCCCceEEEcChhhc
Confidence 3444554444 5899999995432 1236789999998 3 34788999999999999999999999999999999
Q ss_pred eeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHH
Q psy210 200 GRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTII 279 (915)
Q Consensus 200 GrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~ 279 (915)
|||+|++|+|||+++++....+++++.+||||++|..+++++.||+++||.++|+++|||++|+|++|+|||+| +++|+
T Consensus 100 GRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStL-l~~i~ 178 (434)
T PRK08472 100 GRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMIV 178 (434)
T ss_pred CCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCHHHH-HHHHh
Confidence 99999999999999887766778999999999999999999999999999999999999999999999999999 79999
Q ss_pred hhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccch
Q psy210 280 NQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLT 359 (915)
Q Consensus 280 ~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddlt 359 (915)
++.+.++ +||+++|+|++|+.+|++... .+.++++++|++++|+||.+|++++++|+++||||||+|+|||+++||||
T Consensus 179 ~~~~~~v-~vi~~iGergrev~e~~~~~l-~~~l~~tvvV~atsddsp~~R~~~~~~a~~iAEyFrd~G~~Vll~~DslT 256 (434)
T PRK08472 179 KGCLAPI-KVVALIGERGREIPEFIEKNL-GGDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVT 256 (434)
T ss_pred hccCCCE-EEEEeeCccchhHHHHHHHHh-cCcccceEEEEECCCCCHHHhhHHHHHHHHHHHHHHHcCCCEEEecccch
Confidence 9888876 789999999999999998654 44589999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccc
Q psy210 360 KHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVI 439 (915)
Q Consensus 360 r~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~ 439 (915)
|||+|+||||+++||||+++||||++|+.||+|+||||+.++ +||||+||+|++|+||++|||||+++
T Consensus 257 r~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~g------------~GSIT~~~tVlv~gdD~~dpi~d~~~ 324 (434)
T PRK08472 257 RFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEEG------------KGSITAFFTVLVEGDDMSDPIADQSR 324 (434)
T ss_pred HHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCCC------------CceeeEeEEEEecCCCCCCCchHHhh
Confidence 999999999999999999999999999999999999999742 69999999999999999999999999
Q ss_pred cccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHHHh
Q psy210 440 SITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQLYN 516 (915)
Q Consensus 440 ~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L~~ 516 (915)
+|+||||+|||+||++||||||||+.|+||+|+.++.++|++++.++|+.|++|+|+|+|+++|. ++|+++|+++++
T Consensus 325 ~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~d~~~d~ai~~ 404 (434)
T PRK08472 325 SILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGNDKELDEAISK 404 (434)
T ss_pred hhcceEEEEcHHHHhCCCCCccCCccccCccchhcCCHHHHHHHHHHHHHHHhchhHHHHHHhhCccCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999994 999999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 517 GEKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 517 ~~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
+++|++||+|+.++++++++++..|..+
T Consensus 405 ~~~i~~fL~Q~~~~~~~~~~~~~~l~~~ 432 (434)
T PRK08472 405 KEFMEQFLKQNPNELFPFEQTFEQLEEI 432 (434)
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999988754
No 50
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=7.5e-87 Score=753.05 Aligned_cols=400 Identities=26% Similarity=0.386 Sum_probs=371.8
Q ss_pred EEEEeecChhhcccccccccC--CCc-eEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccc
Q psy210 123 NIEYDYFDPRCLNQTLNIKFA--NNT-VLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELL 199 (915)
Q Consensus 123 ~~~~~~~~p~~L~~~le~~~~--~g~-~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lL 199 (915)
.++.+ .....+++.++++.. .+. .--+||.|.++ + .+.+++++.+.|++.|++|.++++++++|+|+++|
T Consensus 17 ~i~~~-~~~~~~ge~~~i~~~~~~~~~~~~~evv~~~~--~----~~~l~~~~~~~gi~~g~~v~~~~~~~~v~vg~~ll 89 (428)
T PRK08149 17 IIEAE-LPDVAIGEICEIRAGWHSNEVIARAQVVGFQR--E----RTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALL 89 (428)
T ss_pred EEEEE-ECCCCcCCEEEEeecCCCCceeeEEEEEEeeC--c----EEEEEECCCccCCCCCCEEEEcCCcCEEEeChhhc
Confidence 34444 336789999999532 232 22379999987 3 34778999999999999999999999999999999
Q ss_pred eeEeCCCceeecCCC--ccc--ccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHH
Q psy210 200 GRIVNSKGEFIDNKK--KFL--IKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAI 275 (915)
Q Consensus 200 GrviD~lG~PiD~~~--~~~--~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l 275 (915)
|||+|++|+|+|+++ +.. +..+++++.+||||++|..+++||.||+++||.++|+++|||++|||++|+||||| +
T Consensus 90 Grv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG~GKTTL-l 168 (428)
T PRK08149 90 GAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSL-M 168 (428)
T ss_pred CCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCCCCChhHH-H
Confidence 999999999999986 322 24678999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEe
Q psy210 276 DTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIY 355 (915)
Q Consensus 276 ~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~ 355 (915)
++|+++.+.++ +||++||+|++|+.+|++++.+.+.++|+++|++++|+||.+|++++|+|+|+|||||++|+|||+++
T Consensus 169 ~~i~~~~~~dv-~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~fr~~G~~Vll~~ 247 (428)
T PRK08149 169 NMLIEHSEADV-FVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFI 247 (428)
T ss_pred HHHhcCCCCCe-EEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEEc
Confidence 99999998887 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccc
Q psy210 356 DDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIP 435 (915)
Q Consensus 356 Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~ 435 (915)
|||||||+|+||||+++||||+++||||++|+.||+|+||||+.+ +||||+||+|++|+||++||||
T Consensus 248 DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~~-------------~GSIT~~~tVl~~~dD~~dpi~ 314 (428)
T PRK08149 248 DSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATL-------------AGSITAFYTVLLESEEEPDPIG 314 (428)
T ss_pred cchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCCC-------------CCCceEEEEEEecCCCCCCCch
Confidence 999999999999999999999999999999999999999999873 6999999999999999999999
Q ss_pred cccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHH
Q psy210 436 TNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKT 512 (915)
Q Consensus 436 ~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~ 512 (915)
|++++|+||||+|||+||++||||||||+.|+||+|++++.++|++++.++|+.|++|+|+++++++|+ +.|++.|+
T Consensus 315 d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~~~~~d~ 394 (428)
T PRK08149 315 DEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYRRGENADNDR 394 (428)
T ss_pred hhhheeccEEEEEcHHHHhCCCCCcccCccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999993 78999999
Q ss_pred HHHhHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 513 QLYNGEKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 513 ~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
+++++++|++||+|+.+|+.++++++..|..+
T Consensus 395 ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~ 426 (428)
T PRK08149 395 AMDKRPALEAFLKQDVAEKSSFSDTLERLNEF 426 (428)
T ss_pred HHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 51
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=4.7e-87 Score=769.12 Aligned_cols=402 Identities=23% Similarity=0.303 Sum_probs=365.1
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
-.+.-.......+++.+.+. +..+.|+|.+++| +.+ .+++|+++.|++.|++|.+||+++++++|+++|||
T Consensus 13 pvv~~~~~~~~~~~E~v~v~---~~~l~gEVi~~~~--d~a----~iqv~e~T~Gl~~G~~V~~tg~plsv~lGpglLGr 83 (586)
T PRK04192 13 PLVVAEGMGGARMYEVVRVG---EEGLIGEIIRIEG--DKA----TIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLGS 83 (586)
T ss_pred cEEEEEeCCCCCccCEEEEC---CCcEEEEEEEEeC--Cce----EEEEecCCcCCCCCCEEEeCCCccEEEcCHHhcCC
Confidence 34445555546788888873 2347899999999 433 78899999999999999999999999999999999
Q ss_pred EeCCCceeecCCCc----c----------c--------------------------------------------------
Q psy210 202 IVNSKGEFIDNKKK----F----------L-------------------------------------------------- 217 (915)
Q Consensus 202 viD~lG~PiD~~~~----~----------~-------------------------------------------------- 217 (915)
++|++|+|||+.+. . .
T Consensus 84 v~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i~ 163 (586)
T PRK04192 84 IFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEIV 163 (586)
T ss_pred eecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEEc
Confidence 99999999997641 0 0
Q ss_pred -------------------------ccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhH
Q psy210 218 -------------------------IKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTT 272 (915)
Q Consensus 218 -------------------------~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~ 272 (915)
..++||+..++|. .+|.++++||.||||+||+|+||+||||++|+|++|+|||+
T Consensus 164 ~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GKTv 242 (586)
T PRK04192 164 SEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTV 242 (586)
T ss_pred cCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCCCCHHH
Confidence 0145799988887 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhc-------cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHH
Q psy210 273 IAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKY-------YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR 345 (915)
Q Consensus 273 l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r 345 (915)
| +++|++|+++|+ |||++||||++|+.+|+++|.+ .++|+||++|+||||+|+++|++++|+|+|+|||||
T Consensus 243 l-~~~iak~a~adi-vVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAEYfR 320 (586)
T PRK04192 243 T-QHQLAKWADADI-VIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIYTGITIAEYYR 320 (586)
T ss_pred H-HHHHHhcCCCCE-EEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9 799999999996 8999999999999999999875 458999999999999999999999999999999999
Q ss_pred hcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEe
Q psy210 346 DLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIET 425 (915)
Q Consensus 346 ~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~ 425 (915)
|+|+|||+++||+||||+|+||||+++||||+++|||+|+|+.+|++|||||+++...| ++||||++++|++
T Consensus 321 d~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~--------~~GSIT~i~aVs~ 392 (586)
T PRK04192 321 DMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGG--------EEGSVTIIGAVSP 392 (586)
T ss_pred HCCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccCCC--------CCcceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999865333 2799999999999
Q ss_pred cCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccccccccc-------HHHHHHHHHHHHHHHhhHHHHh
Q psy210 426 LEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQY-------KIVKKLSGDIRIMLAQYRELES 498 (915)
Q Consensus 426 ~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~-------~~~~~~a~~lr~~la~~~e~e~ 498 (915)
|+||++|||++++++|+||||+|||+||++||||||||+.|+||++..... ++|.+++.+++++|++|+|+++
T Consensus 393 pggD~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~el~e 472 (586)
T PRK04192 393 PGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQE 472 (586)
T ss_pred CCCCCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcccchhhcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988755 9999999999999999999999
Q ss_pred hhhc-cC-CCCHHHHHHHHhHHHHH-HHhhcCCCCCc----cHHHHHHHHHH
Q psy210 499 FSKF-SS-DLDIVTKTQLYNGEKIS-LLMKQKPHENY----SIVELIIILLI 543 (915)
Q Consensus 499 l~~l-G~-~ld~~~~~~L~~~~~i~-~fL~Q~~~e~~----s~ee~l~~L~a 543 (915)
++++ |. +|+++++..|++++.|+ .||+|+.++++ ++++++..|..
T Consensus 473 iv~lvG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~~~d~~~~l~k~~~~l~~ 524 (586)
T PRK04192 473 IVRLVGPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLKL 524 (586)
T ss_pred HHHHhCcccCCHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHHHHH
Confidence 9996 74 79999999999999997 69999999998 67766665554
No 52
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=7.7e-88 Score=774.58 Aligned_cols=331 Identities=30% Similarity=0.460 Sum_probs=310.6
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCC----C----------CC-
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE----I----------NS- 643 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~----~----------~~- 643 (915)
+.|| ..++++.+.+++|++|.||++|++|+.||+++++++|+++||||+|++|||+|+.+. . ..
T Consensus 34 ~gEV-i~~~~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpglLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~ 112 (578)
T TIGR01043 34 IGEI-IRIEGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRD 112 (578)
T ss_pred EEEE-EEEcCCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHHHhcceeccCCccccCcccccccccccCccCCCcCcc
Confidence 3445 689999999999999999999999999999999999999999999999999997621 1 11
Q ss_pred ------------------------------------------------------------------------CCCCccCC
Q psy210 644 ------------------------------------------------------------------------KKKSPIHT 651 (915)
Q Consensus 644 ------------------------------------------------------------------------~~~~pi~~ 651 (915)
.++||+..
T Consensus 113 ~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~ 192 (578)
T TIGR01043 113 KKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI 192 (578)
T ss_pred cccccccccccCccccCCceEEEEecccceeeeeecCCCCcceEEEeccCCCceeeeeEEEEecCCceeeeeeeeccccc
Confidence 12679977
Q ss_pred CCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHH
Q psy210 652 LPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYH 731 (915)
Q Consensus 652 ~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~ 731 (915)
|+++.+|.++++||.||||+||+|+|||||||++|||++|||||+|++|++++. ++|++||++||||++|++||++
T Consensus 193 -p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT~l~~~lak~~---~adivVyvg~GERG~E~~e~le 268 (578)
T TIGR01043 193 -PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQHQLAKWS---DADIVVYIGCGERGNEMTDVLE 268 (578)
T ss_pred -CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCHHHHHHHHHhcC---CCCEEEEEEeccChHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999974 4699999999999999999999
Q ss_pred Hhhh-------cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCC
Q psy210 732 EMKE-------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSA 804 (915)
Q Consensus 732 ~~~~-------~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~ 804 (915)
++.+ .++|+|||+|+||||+|+.+|++++|+|+|+||||||+|+||++|+||+||||+|+||||+++||||++
T Consensus 269 ~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfRD~G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~ 348 (578)
T TIGR01043 269 EFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGE 348 (578)
T ss_pred HhHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChhHHHHHHHHHHHhcCCCCCC
Confidence 9943 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHhcCCC-------CCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCC
Q psy210 805 VGYQPTLAEEMGKLQERISSTK-------NGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPL 877 (915)
Q Consensus 805 ~gyp~~l~~~l~~l~ERag~~~-------~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~ 877 (915)
+|||||||++|++||||||+.. +||||+|++|++|+||++|||+++|++|+||||+|||+||++||||||||+
T Consensus 349 eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~~ggD~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l 428 (578)
T TIGR01043 349 EGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWL 428 (578)
T ss_pred CCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEECCCCCCCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcc
Confidence 9999999999999999999642 699999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCC-------CCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 878 ESYSKQLDPYI-------VGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 878 ~S~SR~~~~~~-------~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
.|+||+|+ .+ ++++|.+++++++++|++|+|+++|++
T Consensus 429 ~S~Sr~~~-~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~ 472 (578)
T TIGR01043 429 QSYSLYVD-LVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQ 472 (578)
T ss_pred cchhhhcc-ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999995 45 799999999999999999999999874
No 53
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.5e-86 Score=747.86 Aligned_cols=395 Identities=22% Similarity=0.313 Sum_probs=371.6
Q ss_pred hhhcccccccccCCCc---eEeeEeeccchhHHHhhcccchhhccccccccCCCccccc-------Cccceeccccccce
Q psy210 131 PRCLNQTLNIKFANNT---VLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCT-------EKIFEIPVGFELLG 200 (915)
Q Consensus 131 p~~L~~~le~~~~~g~---~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~t-------g~~~~vpvg~~lLG 200 (915)
...+++.+.+....+. ...+||.|+++ + .+.+++++.+.|+..|++|.++ ++++++|+++++||
T Consensus 45 ~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~--~----~~~l~~~~~~~gi~~g~~v~~~~~~~~~~~~~~~v~vg~~llG 118 (455)
T PRK07960 45 QLPLGATCVIERQNGSETHEVESEVVGFNG--Q----RLFLMPLEEVEGILPGARVYARNISGEGLQSGKQLPLGPALLG 118 (455)
T ss_pred CCCCCCEEEEEeCCCccccceeeeEEEecC--C----EEEEEECCCccCCCCCCEEEECCcccccCCCceEEECCccccc
Confidence 4568888887432341 25569999998 3 3478899999999999999998 99999999999999
Q ss_pred eEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 201 RIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 201 rviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
||+|++|+|||+++++....+++++.+||||++|..+++|++||||+||.|+|+++|||++|||++|+|||+| +++|++
T Consensus 119 Rvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTL-L~~Ia~ 197 (455)
T PRK07960 119 RVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVL-LGMMAR 197 (455)
T ss_pred CEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEEEECCCCCCccHH-HHHHhC
Confidence 9999999999999887777778999999999999999999999999999999999999999999999999999 899999
Q ss_pred hcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchh
Q psy210 281 QKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTK 360 (915)
Q Consensus 281 ~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr 360 (915)
+.+.++ +|+++||+|++|+.+|++++.+.+.++++++|.+++|+||.+|++++++|+|+||||||+|+|||+++|||||
T Consensus 198 ~~~~d~-iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr 276 (455)
T PRK07960 198 YTQADV-IVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR 276 (455)
T ss_pred CCCCCE-EEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecchhH
Confidence 988887 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccccccc
Q psy210 361 HAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVIS 440 (915)
Q Consensus 361 ~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~ 440 (915)
||+|+||||+++||||+++||||++|+.||+|+||||+... ++||||+||+|++|+||++|||||++++
T Consensus 277 ~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~-----------~~GSIT~i~tVlv~~dD~~dpi~d~~~~ 345 (455)
T PRK07960 277 YAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIS-----------GGGSITAFYTVLTEGDDQQDPIADSARA 345 (455)
T ss_pred HHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCC-----------CCeeeeeEEEEEEcCCCCCcchHHHhhh
Confidence 99999999999999999999999999999999999998632 2799999999999999999999999999
Q ss_pred ccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHHhH
Q psy210 441 ITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLYNG 517 (915)
Q Consensus 441 i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~~~ 517 (915)
|+||||||||+||++||||||||+.|+||++..+..++|.+.+..+|+.|+.|+++++++++| .|.|++.|+++.+.
T Consensus 346 i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~~~~~~~~~~~~~r~~l~~Y~~~~dli~ig~y~~G~d~~~D~ai~~~ 425 (455)
T PRK07960 346 ILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALW 425 (455)
T ss_pred hcceEEEECHHHHhCCCCCccCcCcccCcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999999999999999999998 39999999999999
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 518 EKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 518 ~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
+.|++||+|+.+|..++++++..|..+
T Consensus 426 ~~i~~fl~Q~~~e~~~~~~~~~~l~~~ 452 (455)
T PRK07960 426 PQLEAFLQQGIFERADWEDSLQALERI 452 (455)
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHHh
Confidence 999999999999999999999998854
No 54
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=6.3e-86 Score=754.24 Aligned_cols=402 Identities=21% Similarity=0.283 Sum_probs=359.0
Q ss_pred EEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeC
Q psy210 125 EYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVN 204 (915)
Q Consensus 125 ~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD 204 (915)
+-+-.....+++.+++. .. .+.|+|.+++| +. ..+++++++.|++.|++|..||+++++++|+++||+|+|
T Consensus 14 ~a~g~~~~~~gE~v~v~-~~--~l~gEVI~l~~--d~----a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpglLG~V~D 84 (591)
T TIGR01042 14 VAENMAGAAMYELVRVG-HD--ELVGEIIRLEG--DK----ATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILGNIFD 84 (591)
T ss_pred EEecCCCCCcCCEEEEC-CC--ceEEEEEEEcC--Ce----EEEEEccCccCCCCCCEEEeCCCccEEEcCHHHhhcccC
Confidence 33333345788888873 22 36899999998 33 378999999999999999999999999999999999999
Q ss_pred CCceeecCCC----c-----------ccc---------------------------------------------------
Q psy210 205 SKGEFIDNKK----K-----------FLI--------------------------------------------------- 218 (915)
Q Consensus 205 ~lG~PiD~~~----~-----------~~~--------------------------------------------------- 218 (915)
++|+|||+.+ + +..
T Consensus 85 gigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i~~ 164 (591)
T TIGR01042 85 GIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYIAP 164 (591)
T ss_pred cCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEEcc
Confidence 9999999753 1 100
Q ss_pred ------------------------cccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHH
Q psy210 219 ------------------------KNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIA 274 (915)
Q Consensus 219 ------------------------~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~ 274 (915)
.++||+.. ||++++|.++++||.||+|+||+|+|||+|||++|||++|||||+|
T Consensus 165 ~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~GKT~l- 242 (591)
T TIGR01042 165 AGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVI- 242 (591)
T ss_pred CCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCCcCHHHH-
Confidence 02688887 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEEeeccchhhHHHHHHHH---------hccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHH
Q psy210 275 IDTIINQKNKNVICIYVCIGQKISSLINVINKL---------KYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR 345 (915)
Q Consensus 275 l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l---------~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r 345 (915)
+++|++++++|+ |||++||||++|+++|+++| ++..+|+||++|+||||+|+.+|++++|+|+|+|||||
T Consensus 243 ~~~lak~s~aDv-iVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEYfR 321 (591)
T TIGR01042 243 SQSLSKYSNSDA-IVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFR 321 (591)
T ss_pred HHHHHhccCcCE-EEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 788999999998 89999999999999999997 34577999999999999999999999999999999999
Q ss_pred hcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEe
Q psy210 346 DLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIET 425 (915)
Q Consensus 346 ~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~ 425 (915)
|+|+|||+++||+||||+|+||||+++||||+++|||+|+|+.+|+||||||+++. +|+ .+++||||++++|++
T Consensus 322 D~G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~-~~~-----~~~~GSIT~i~aVs~ 395 (591)
T TIGR01042 322 DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKC-LGS-----PEREGSVSIVGAVSP 395 (591)
T ss_pred hcCCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCcc-CCC-----CCCCccEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999864 332 234799999999999
Q ss_pred cCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccc------cHHHHHHHHHHHHHHHhhHHHHhh
Q psy210 426 LEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ------YKIVKKLSGDIRIMLAQYRELESF 499 (915)
Q Consensus 426 ~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~------~~~~~~~a~~lr~~la~~~e~e~l 499 (915)
|+||++|||++++++|+||||+|||+||++||||||||+.|+||++.... +++|.+++.++|.+|++|+|++++
T Consensus 396 ~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~~l~~~~~~~~~~~~~~~~~~~~lL~~~~el~ei 475 (591)
T TIGR01042 396 PGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEI 475 (591)
T ss_pred CCCCCCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887 899999999999999999999999
Q ss_pred hhcc--CCCCHHHHHHHHhHHHH-HHHhhcC----CCCCccHHHHHHHHHHH
Q psy210 500 SKFS--SDLDIVTKTQLYNGEKI-SLLMKQK----PHENYSIVELIIILLII 544 (915)
Q Consensus 500 ~~lG--~~ld~~~~~~L~~~~~i-~~fL~Q~----~~e~~s~ee~l~~L~ai 544 (915)
++++ +.+++.++..+.++..+ ++||+|+ ..+..++++++..|..+
T Consensus 476 v~l~g~~~l~~~d~~i~~~a~~i~e~FLqQ~a~~~~d~~~~~~kt~~~L~~i 527 (591)
T TIGR01042 476 VQLVGKDALAETDKITLEVAKLIKEDFLQQNGYTPYDRFCPFYKTVGMMRNM 527 (591)
T ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHH
Confidence 9997 35655555555555555 6899999 67778999999887764
No 55
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.4e-86 Score=745.68 Aligned_cols=402 Identities=23% Similarity=0.300 Sum_probs=374.7
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
-.++-... ...+++.++++..++..+.|||.|++| + -+.+++|+.+.+++.|++|.++++++++|+++++|||
T Consensus 27 ~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~--~----~~~l~~~~~~~gi~~g~~v~~~~~~~~v~vg~~llGr 99 (434)
T PRK07196 27 LLLESVGC-RLAIGQRCRIESVDETFIEAQVVGFDR--D----ITYLMPFKHPGGVLGGARVFPSEQDGELLIGDSWLGR 99 (434)
T ss_pred CEEEEecC-CCCcCCEEEEEeCCCceEEEEEEEecC--C----EEEEEECCCccCCCCCCEEEECCCccEEEcCccccCC
Confidence 34444444 368999999965456458889999998 3 3478899999999999999999999999999999999
Q ss_pred EeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 202 IVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 202 viD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
|+|++|+|||+++++.+...++++.++|||++|.++++||+||+++||.++|+++|||++|||++|+||||| +++|+++
T Consensus 100 v~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTL-l~~I~g~ 178 (434)
T PRK07196 100 VINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVL-LGMITRY 178 (434)
T ss_pred eeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCccHH-HHHHhcc
Confidence 999999999999887666677899999999999999999999999999999999999999999999999999 7999998
Q ss_pred cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhH
Q psy210 282 KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 282 ~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
.+.++ +|+++||++++|+.+|.++......+.|++++++++++|+.+|+.+++.++++||||+++|+|||+++||||||
T Consensus 179 ~~~dv-~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 179 TQADV-VVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred cCCCe-EEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 88886 56799999999999999875444558899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccc
Q psy210 362 AWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISI 441 (915)
Q Consensus 362 a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i 441 (915)
|+|+||||+++||||+++||||++|+.|++|+||||+.++ +||||+||+|++|+||++|||||+++||
T Consensus 258 a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~------------~GSIT~~~tVl~~~dD~~dpi~d~~~~i 325 (434)
T PRK07196 258 AMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSG------------NGTMTAIYTVLAEGDDQQDPIVDCARAV 325 (434)
T ss_pred HhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCCC------------CEEeeeeeEEEccCCCCCCchhHhhhhh
Confidence 9999999999999999999999999999999999998742 6999999999999999999999999999
Q ss_pred cCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHHHhHH
Q psy210 442 TDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQLYNGE 518 (915)
Q Consensus 442 ~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L~~~~ 518 (915)
+||||||||+||++||||||||+.|+||+|+.++.++|+++|.++|+.|++|+|+++|+++|. ++|+++|+++++++
T Consensus 326 lDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai~~~~ 405 (434)
T PRK07196 326 LDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADPMADQAVHYYP 405 (434)
T ss_pred cceEEEEcHHHHhCCCCCccCCccccCccchhccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 519 KISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 519 ~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
++++||+|+.+|+.++++++..|..+
T Consensus 406 ~i~~fL~Q~~~e~~~~~~~~~~l~~~ 431 (434)
T PRK07196 406 AITQFLRQEVGHPALFSASVEQLTGM 431 (434)
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999854
No 56
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=2.7e-86 Score=745.44 Aligned_cols=323 Identities=25% Similarity=0.380 Sum_probs=310.1
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
...+| .+++++.+++++|+++.||+.|++|.++|+++++|||+++||||+|++|+|+|+++++.. +.+|+++.||||+
T Consensus 38 ~~geV-i~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg~~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~ 115 (436)
T PRK02118 38 SLAQV-IRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPV 115 (436)
T ss_pred EEEEE-EEEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcCccccCCEEccCCcccCCCCCCCc-ceeecCCCCCChH
Confidence 34566 699999999999999999999999999999999999999999999999999998877754 4589999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|.+++++++||||+||+|+|+|||||+||||++|+|||+|+.+|+++.. .+++||++||||.||+.||++++++++
T Consensus 116 ~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~~ia~~~~---~~v~Vfa~iGeR~rE~~ef~~~~~~~~ 192 (436)
T PRK02118 116 KRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARIALQAE---ADIIILGGMGLTFDDYLFFKDTFENAG 192 (436)
T ss_pred HcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHHHHHHHhhC---CCeEEEEEeccchhHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999998753 489999999999999999999999999
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCC-CcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSG-KDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g-~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~ 816 (915)
+++|||+|++|||+||.+|+++|++|+|+||||||+| +|||+++||+||||+|+||||+++||+|+++||||++|++|+
T Consensus 193 ~l~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~ 272 (436)
T PRK02118 193 ALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLA 272 (436)
T ss_pred CcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCC----H
Q psy210 817 KLQERISST-KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVG----E 891 (915)
Q Consensus 817 ~l~ERag~~-~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~----~ 891 (915)
+||||+|+. ++||||+||+|++|+||++|||||++++||||||||||+| |||+.|+||+| +.+++ +
T Consensus 273 ~l~ERag~~~~~GSITai~~V~~p~DD~tdPi~d~~~silDGqIvLsR~l--------ID~l~S~SRl~-~~v~g~~t~~ 343 (436)
T PRK02118 273 SRYEKAVDFEDGGSITIIAVTTMPGDDVTHPVPDNTGYITEGQFYLRRGR--------IDPFGSLSRLK-QLVIGKKTRE 343 (436)
T ss_pred HHHHhcCCCCCCeeEEEEEEEEcCCCCcCccHHHHHHHhcCcEEEecccc--------ccCcccccccc-ccccCccccH
Confidence 999999985 5899999999999999999999999999999999999999 99999999999 78999 6
Q ss_pred HHHHHHHHHHHHHHccHhhhhcc
Q psy210 892 EHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 892 ~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
+|+++|+++|++|++|+|+++|+
T Consensus 344 ~h~~~a~~l~~~~a~y~e~~dli 366 (436)
T PRK02118 344 DHGDLMNAMIRLYADSREAKEKM 366 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 57
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=2.4e-85 Score=740.83 Aligned_cols=399 Identities=21% Similarity=0.309 Sum_probs=372.1
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
..++-.-.. ..+++.+++...++....|+|.++++ + .+.+++++.+.+++.|++|.++++++++|+++++|||
T Consensus 29 ~~i~~~g~~-~~~ge~~~i~~~~~~~~~~eVv~~~~--~----~~~l~~~~~~~gi~~G~~V~~~~~~~~v~vg~~llGr 101 (434)
T PRK05922 29 NLLEAQGLS-ACLGELCQISLSKSPPILAEVIGFHN--R----TTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDHLLGR 101 (434)
T ss_pred cEEEEEeCC-CCCCCEEEEecCCCCeeEEEEEEEeC--C----eEEEEEccCCCCCCCCCEEEeCCCCcEEEcChhhcCC
Confidence 444444443 45899999864323336889999998 3 3488899999999999999999999999999999999
Q ss_pred EeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 202 IVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 202 viD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
++|++|+|||+++++....++|++.+||+|++|..+++||+||||+||.|+|+++|||++|||++|+|||+| +.+|+++
T Consensus 102 v~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTL-L~~Ia~~ 180 (434)
T PRK05922 102 VLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSL-LSTIAKG 180 (434)
T ss_pred EeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHHH-HHHHhcc
Confidence 999999999999887777778999999999999999999999999999999999999999999999999999 8999999
Q ss_pred cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhH
Q psy210 282 KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 282 ~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
.+.++ ++|++||+|++|+.+|++++.+...+++|++|++++|+||.+|++++++|+|+||||||+|+|||+++||||||
T Consensus 181 ~~~d~-gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 181 SKSTI-NVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred CCCCc-eEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 87775 78999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccc
Q psy210 362 AWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISI 441 (915)
Q Consensus 362 a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i 441 (915)
|+|+||||+++||||+++||||++|+.||+|+||||+.+ +||||+||+|++++| +.|||+|+++||
T Consensus 260 A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~~-------------~GSIT~~~tVl~~~~-~~dpi~d~~rsi 325 (434)
T PRK05922 260 IAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNND-------------KGSITALYAILHYPN-HPDIFTDYLKSL 325 (434)
T ss_pred HHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCCC-------------CcceeEEEEEEecCC-CCCccccchhhh
Confidence 999999999999999999999999999999999999831 799999999999988 789999999999
Q ss_pred cCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHHhHH
Q psy210 442 TDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLYNGE 518 (915)
Q Consensus 442 ~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~~~~ 518 (915)
+||||||||+|++++ |||||++.|+||+|+.+++++|++++.++|+.|++|+|+|+|+++| .+.|++.|+++++.+
T Consensus 326 lDGhIvLsr~la~~~-~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~edli~~G~y~~g~d~~~d~a~~~~~ 404 (434)
T PRK05922 326 LDGHFFLTPQGKALA-SPPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYVPGQDAHLDRAVKLLP 404 (434)
T ss_pred cCcEEEEcHHHHhCC-CCCcCCccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCHHHHHHHHhHH
Confidence 999999999999887 9999999999999999999999999999999999999999999998 389999999999999
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 519 KISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 519 ~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
.|++||+|+..+..++++++..|..+
T Consensus 405 ~i~~fl~Q~~~~~~~~~~~~~~l~~~ 430 (434)
T PRK05922 405 SIKQFLSQPLSSYCALHNTLKQLEAL 430 (434)
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999988854
No 58
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.5e-86 Score=759.42 Aligned_cols=331 Identities=25% Similarity=0.443 Sum_probs=310.1
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCC----C-----------CCC
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKG----E-----------INS 643 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~----~-----------~~~ 643 (915)
+.|+ ..|+++.+.+++|+++.||++|++|..||+++++++|+++||||+|++|||||+.+ . +..
T Consensus 35 ~gEV-I~l~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpglLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~ 113 (591)
T TIGR01042 35 VGEI-IRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDR 113 (591)
T ss_pred EEEE-EEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHHHhhcccCcCCCchHHHHhhccCccccCCCCCCCCCc
Confidence 3345 58999999999999999999999999999999999999999999999999999753 1 110
Q ss_pred ---------------------------------------------------------------------------CCCCc
Q psy210 644 ---------------------------------------------------------------------------KKKSP 648 (915)
Q Consensus 644 ---------------------------------------------------------------------------~~~~p 648 (915)
.++||
T Consensus 114 ~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wP 193 (591)
T TIGR01042 114 DKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWP 193 (591)
T ss_pred cccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEEccCCCceeeeEEEEEeeCCceeeeccceeee
Confidence 12689
Q ss_pred cCCCCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHH
Q psy210 649 IHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGND 728 (915)
Q Consensus 649 i~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e 728 (915)
+.. ||++.+|.++++||.||+|+||+|+|||||||++|||++|||||+|++||+++. ++|++||++||||++|++|
T Consensus 194 vr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~GKT~l~~~lak~s---~aDviVyvg~GERG~Em~e 269 (591)
T TIGR01042 194 VRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYS---NSDAIVYVGCGERGNEMAE 269 (591)
T ss_pred ccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCCcCHHHHHHHHHhcc---CcCEEEEEEEeechHHHHH
Confidence 987 889999999999999999999999999999999999999999999999999875 3689999999999999999
Q ss_pred HHHHh---------hhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcC
Q psy210 729 FYHEM---------KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLG 799 (915)
Q Consensus 729 ~~~~~---------~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~g 799 (915)
|+++| ++++.|+|||+|+||||+|+.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++|
T Consensus 270 vle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEYfRD~G~~Vll~~DS~tR~AeAlREIsl~lg 349 (591)
T TIGR01042 270 VLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLA 349 (591)
T ss_pred HHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHhccC
Confidence 99997 445789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhHHHHHHHHHhcCC-------CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCc
Q psy210 800 RTPSAVGYQPTLAEEMGKLQERISST-------KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYP 872 (915)
Q Consensus 800 e~p~~~gyp~~l~~~l~~l~ERag~~-------~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~P 872 (915)
|||+++|||+|||+.|++||||||+. ++||||+|++|++|+||++|||++++++|+|+||+|||+||++||||
T Consensus 350 E~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i~aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ghyP 429 (591)
T TIGR01042 350 EMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFP 429 (591)
T ss_pred CCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEEEEEECCCCCCCCchHHHHHHHhcceeeeCHHHHhCCCCC
Confidence 99999999999999999999999974 37999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccCCCCC------CHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 873 AIDPLESYSKQLDPYIV------GEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 873 AIdv~~S~SR~~~~~~~------~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
||||+.|+||+|+ .+. +++|.++++++|++|++|+|+++|++
T Consensus 430 AId~l~S~Sr~~~-~l~~~~~~~~~~~~~~~~~~~~lL~~~~el~eiv~ 477 (591)
T TIGR01042 430 SVNWLISYSKYMR-ALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQ 477 (591)
T ss_pred CcCCchhhhhhhh-hcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999994 555 79999999999999999999999863
No 59
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=7.7e-86 Score=759.06 Aligned_cols=332 Identities=29% Similarity=0.449 Sum_probs=310.2
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCC--------------CC--
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE--------------IN-- 642 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~--------------~~-- 642 (915)
+.|| ..++++.+.+++|++|+||++|++|.+||+++++++|+++||||+|++|+|||+.+. +.
T Consensus 37 ~gEV-i~~~~d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGpglLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~ 115 (586)
T PRK04192 37 IGEI-IRIEGDKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDRE 115 (586)
T ss_pred EEEE-EEEeCCceEEEEecCCcCCCCCCEEEeCCCccEEEcCHHhcCCeecCCCCcccccchhcccccccCCCCCCCCcc
Confidence 4455 589999999999999999999999999999999999999999999999999997641 11
Q ss_pred -------------------------------------------------------------------------CCCCCcc
Q psy210 643 -------------------------------------------------------------------------SKKKSPI 649 (915)
Q Consensus 643 -------------------------------------------------------------------------~~~~~pi 649 (915)
..++||+
T Consensus 116 ~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPv 195 (586)
T PRK04192 116 KKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPV 195 (586)
T ss_pred cccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEEccCCCceeeeEEEEEEccCCceeeecccccccc
Confidence 1155899
Q ss_pred CCCCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHH
Q psy210 650 HTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDF 729 (915)
Q Consensus 650 ~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~ 729 (915)
+.++|. .+|.++++||.||||+||+|+||+||||++|||++|+|||+|+++|+++. +.|++||++||||++|++||
T Consensus 196 r~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GKTvl~~~iak~a---~adivVyvg~GERg~E~~e~ 271 (586)
T PRK04192 196 RRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLAKWA---DADIVIYVGCGERGNEMTEV 271 (586)
T ss_pred ccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCCCCHHHHHHHHHhcC---CCCEEEEEEcCcChHHHHHH
Confidence 988776 99999999999999999999999999999999999999999999999985 36899999999999999999
Q ss_pred HHHhhh-------cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCC
Q psy210 730 YHEMKE-------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTP 802 (915)
Q Consensus 730 ~~~~~~-------~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p 802 (915)
+++|.+ .++|+|||+|+||||+|+.+|++++|+|+|+||||||+|+|||+|+||+||||+|+||||+++||+|
T Consensus 272 l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAEYfRd~G~~Vllm~DStSR~AeAlREIS~~l~E~P 351 (586)
T PRK04192 272 LEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMP 351 (586)
T ss_pred HHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHHHHHhcCCCC
Confidence 999875 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHhcCC-----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCC
Q psy210 803 SAVGYQPTLAEEMGKLQERISST-----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPL 877 (915)
Q Consensus 803 ~~~gyp~~l~~~l~~l~ERag~~-----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~ 877 (915)
+++|||+|||++|++||||||+. ++||||++++|++|+||++|||+++|++|+||||+|||+||++||||||||+
T Consensus 352 ~~eGYP~yL~S~La~~yERAG~v~~~~~~~GSIT~i~aVs~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l 431 (586)
T PRK04192 352 GEEGYPAYLASRLAEFYERAGRVKTLGGEEGSVTIIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWL 431 (586)
T ss_pred ccCCcCccHHHHHHHHHHhhcccccCCCCCcceEEEEEEECCCCCCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCc
Confidence 99999999999999999999975 4799999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCC------CCCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 878 ESYSKQLDPY------IVGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 878 ~S~SR~~~~~------~~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
.|+||+|+.. .++++|.+++++++++|++|+|+++|++
T Consensus 432 ~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~el~eiv~ 475 (586)
T PRK04192 432 TSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQEIVR 475 (586)
T ss_pred cchhhhhhcccchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999642 2358999999999999999999999864
No 60
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.1e-85 Score=744.80 Aligned_cols=331 Identities=30% Similarity=0.511 Sum_probs=319.9
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
.|| ..|+++.+.+++|+++.||+.|++|..+|+++++|+|++|||||+|++|+|+|+.+++...+++|++..||+|++|
T Consensus 62 ~eV-v~~~~~~~~l~~~~~t~gi~~g~~V~~tg~~~~v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R 140 (441)
T PRK09099 62 AEV-VGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSR 140 (441)
T ss_pred EEE-EEEECCEEEEEEccCCcCCCCCCEEEeCCCccEEEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhc
Confidence 344 6899999999999999999999999999999999999999999999999999998887777788999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCcc
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVL 739 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~ 739 (915)
++++++++||+++||.++|+++|||++|||++|+|||+|+.+++++.. ++++||++||||++|+++|++.+.+.+.+
T Consensus 141 ~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l 217 (441)
T PRK09099 141 RMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGERGREVREFIELILGEDGM 217 (441)
T ss_pred CCcccccCCCceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccChHHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999999999999999988653 57899999999999999999999999999
Q ss_pred ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHH
Q psy210 740 DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819 (915)
Q Consensus 740 ~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ 819 (915)
+||++|++|||+||.+|++++|+|+++||||||+|||||+++||+||||+|+||||+++||||+++||||++|+.|++|+
T Consensus 218 ~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ 297 (441)
T PRK09099 218 ARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLL 297 (441)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHH
Q psy210 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANE 899 (915)
Q Consensus 820 ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~ 899 (915)
||+|..++||||+||||++++||++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++++|++++++
T Consensus 298 ERag~~~~GSIT~i~tVl~~~dd~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~ 376 (441)
T PRK09099 298 ERAGMGETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVM-PQVVPREHVQAAGR 376 (441)
T ss_pred HhhcCCCCcchheeEEEEecCCCcCCcchhhhheecceEEEEcHHHHhCCCCCccCCccccCccc-hhcCCHHHHHHHHH
Confidence 99998889999999999999999999999999999999999999999999999999999999999 57899999999999
Q ss_pred HHHHHHccHhhhhccC
Q psy210 900 VKFYLQKYKELKDTST 915 (915)
Q Consensus 900 ~r~~l~~~~e~~~~~~ 915 (915)
+|++|++|+|+|++++
T Consensus 377 lr~~la~y~e~e~li~ 392 (441)
T PRK09099 377 LRQLLAKHREVETLLQ 392 (441)
T ss_pred HHHHHHhhHHHHHHHH
Confidence 9999999999999864
No 61
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.2e-85 Score=743.08 Aligned_cols=332 Identities=31% Similarity=0.468 Sum_probs=319.1
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
.+.||+ .|+++.+.+++|+++.||+.|+.|+.+|+++++|+|++|||||+|++|+|+|+++++...+++|++..||+|+
T Consensus 65 ~~~eVv-~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~ 143 (451)
T PRK05688 65 VEAEVM-GFSGDKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPL 143 (451)
T ss_pred eEEEEE-EEcCCEEEEEEccCccCCCCCCEEEECCCccEEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHH
Confidence 345664 7999999999999999999999999999999999999999999999999999998887777789999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|.+++++++|||++||.++|+++|||++|||++|+|||+|+.+|++.. +++++|+++||+|++|+++|++.+.+.+
T Consensus 144 ~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~~---~~dv~V~g~Ig~rg~ev~~~~~~~~~~~ 220 (451)
T PRK05688 144 NRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFT---EADIIVVGLIGERGREVKEFIEHILGEE 220 (451)
T ss_pred HcccccCCcccceeeecceEEecCCcEEEEECCCCCCHHHHHHHHhCCC---CCCEEEEEEeCcCcHhHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999888653 3578899999999999999999999999
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~ 817 (915)
.++|||+|++|||+||.+|++++++|+++||||||+|+|||++|||+||||+|+||||+++||||+++||||++|+.|++
T Consensus 221 ~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~ 300 (451)
T PRK05688 221 GLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPK 300 (451)
T ss_pred CccEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC--CCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHH
Q psy210 818 LQERISSTK--NGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895 (915)
Q Consensus 818 l~ERag~~~--~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~ 895 (915)
|+||+|+.+ +||||+||||++++||++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++++|++
T Consensus 301 l~ERag~~~~~~GSITai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~ 379 (451)
T PRK05688 301 LVERAGNAEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVM-PQVVDPEHLR 379 (451)
T ss_pred HHHHhcCCCCCCceeeEEEEEEecCCCCCCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccc-hhhCCHHHHH
Confidence 999999875 8999999999999999999999999999999999999999999999999999999999 5889999999
Q ss_pred HHHHHHHHHHccHhhhhcc
Q psy210 896 VANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 896 ~~~~~r~~l~~~~e~~~~~ 914 (915)
+++++|++|++|+++|++.
T Consensus 380 ~a~~~r~~la~y~~~~dli 398 (451)
T PRK05688 380 RAQRFKQLWSRYQQSRDLI 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988874
No 62
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=5.8e-85 Score=739.97 Aligned_cols=329 Identities=29% Similarity=0.465 Sum_probs=317.4
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
.+| ..|+++.+.+++|+++.||+.|++|+.+|+++++|+|+++||||+|++|+|+|+++++ ..+++|+++.+|+|++|
T Consensus 63 ~eV-v~~~~~~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R 140 (440)
T PRK06820 63 AEV-VSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTR 140 (440)
T ss_pred EEE-EEEeCCeEEEEEccCccCCCCCCEEEECCCCcEEEechhhcCCEECccCCccCCCCCC-CcccccccCCCCChhhc
Confidence 445 5899999999999999999999999999999999999999999999999999998766 45678999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCcc
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVL 739 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~ 739 (915)
+++++++.|||++||.|+|+++|||++|||++|+|||+|+.+|+++. +++++||++||||++|+++|++++...+.+
T Consensus 141 ~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl~~I~~~~---~~dv~V~~~iGergrEv~ef~e~~l~~~~~ 217 (440)
T PRK06820 141 QPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCADS---AADVMVLALIGERGREVREFLEQVLTPEAR 217 (440)
T ss_pred CCchhhccCCCceecceEEecCCCEEEEECCCCCChHHHHHHHhccC---CCCEEEEEEEccChHHHHHHHHHhhccCCc
Confidence 99999999999999999999999999999999999999999888754 468999999999999999999999999999
Q ss_pred ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHH
Q psy210 740 DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819 (915)
Q Consensus 740 ~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ 819 (915)
+|+++|+++||+||.+|++++++|+++||||||+|+|||++|||+||||+|+||||+++||||+++||||++|+.|++|+
T Consensus 218 ~rtvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ 297 (440)
T PRK06820 218 ARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLL 297 (440)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHH
Q psy210 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANE 899 (915)
Q Consensus 820 ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~ 899 (915)
||+|+.++||||+||||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+| +.+++++|++.+++
T Consensus 298 ERag~~~~GSIT~i~tVl~~gdD~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~-~~~~~~~~~~~a~~ 376 (440)
T PRK06820 298 ERTGNSDRGSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIM-PQIVSAGQLAMAQK 376 (440)
T ss_pred HhhccCCCcceeEEEEEEccCCCCCCcchhhhccccceEEEECHHHHhCCCCCccCCcccccccc-hhhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 58899999999999
Q ss_pred HHHHHHccHhhhhcc
Q psy210 900 VKFYLQKYKELKDTS 914 (915)
Q Consensus 900 ~r~~l~~~~e~~~~~ 914 (915)
+|++|++|+|+|+|+
T Consensus 377 ~r~~l~~y~e~~~li 391 (440)
T PRK06820 377 LRRMLACYQEIELLV 391 (440)
T ss_pred HHHHHHhhhHHHHHH
Confidence 999999999999985
No 63
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=6.5e-85 Score=698.35 Aligned_cols=273 Identities=73% Similarity=1.140 Sum_probs=266.9
Q ss_pred cccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccccccccccccceeeecccccccCCeeeeccCCCC
Q psy210 614 PILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGV 693 (915)
Q Consensus 614 ~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~ 693 (915)
++++|||+++||||+|++|+|+|+++++...++||+++.+|++++|.+++++|+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 46899999999999999999999998877778899999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC
Q psy210 694 GKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS 773 (915)
Q Consensus 694 GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~ 773 (915)
|||+|++++++++++++.++|||++||||++||+||+++++++++++||++|++|+|+||.+|++++|+|+++||||||+
T Consensus 81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~ 160 (274)
T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDE 160 (274)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccc
Q psy210 774 -GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTF 852 (915)
Q Consensus 774 -g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~ 852 (915)
|+|||+++||+||||+|+||||+++||+|+++||||++|++|++|+||+|+.++||||+|+||++++||++|||+|+++
T Consensus 161 ~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~~~~GSiT~~~~v~~~~dD~~dpi~~~~~ 240 (274)
T cd01133 161 EGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPADDLTDPAPATTF 240 (274)
T ss_pred cCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcCCCCcccceEEEEEecCCCCCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcEEEeeHHHHhcCCCccccCCCCcccccCC
Q psy210 853 THLDSTIVLSRQIAELGIYPAIDPLESYSKQLDP 886 (915)
Q Consensus 853 ~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~ 886 (915)
+||||||+|||+||++||||||||++|+||+|++
T Consensus 241 ~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~ 274 (274)
T cd01133 241 AHLDATTVLSRAIAELGIYPAVDPLDSTSRILDP 274 (274)
T ss_pred HhcceEEEEcHHHHhCCCCCCcCCccchhcccCc
Confidence 9999999999999999999999999999999963
No 64
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=3.2e-84 Score=737.96 Aligned_cols=393 Identities=28% Similarity=0.415 Sum_probs=373.0
Q ss_pred hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceee
Q psy210 131 PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFI 210 (915)
Q Consensus 131 p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~Pi 210 (915)
...+++.+++....+....|+|.+.++ +. +.+++|+.+.+++.|++|.+||+++++|+|+++||||+|++|+||
T Consensus 23 ~~~~ge~~~i~~~~~~~~~~eVi~~~~--~~----~~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrViD~~G~pl 96 (422)
T TIGR02546 23 GARVGELCLIRRRDPSQLLAEVVGFTG--DE----ALLSPLGELHGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPL 96 (422)
T ss_pred CCCCCCEEEEeeCCCCeEEEEEEEEcC--Cc----EEEEEccCccCCCCCCEEEECCCCceEEeChhhccCEeCCCCCcc
Confidence 466889988863334447899999998 43 378899999999999999999999999999999999999999999
Q ss_pred cCCCcccccc--cccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEE
Q psy210 211 DNKKKFLIKN--RETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288 (915)
Q Consensus 211 D~~~~~~~~~--~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~ 288 (915)
|+++++.... ++|++.+||||++|.++++||.||++++|.++|+++|||++|+|++|+|||+| +++|+++...+. +
T Consensus 97 D~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKStL-l~~I~~~~~~~~-~ 174 (422)
T TIGR02546 97 DGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTL-LGMIARGASADV-N 174 (422)
T ss_pred cCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHHH-HHHHhCCCCCCE-E
Confidence 9998776653 68999999999999999999999999999999999999999999999999999 899999988886 8
Q ss_pred EEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHH
Q psy210 289 IYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368 (915)
Q Consensus 289 V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~rei 368 (915)
+|++||+|++|+.+|++.+...+.++++++|++++++|+.+|++++++|+++|||||++|+|||+++||+||||+|+|||
T Consensus 175 vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei 254 (422)
T TIGR02546 175 VIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREI 254 (422)
T ss_pred EEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCchHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEe
Q psy210 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFL 448 (915)
Q Consensus 369 s~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~L 448 (915)
|+++||||+++||||++|+.||+|+||||+. ++||||+||+|++++||++|||||+++||+||||+|
T Consensus 255 ~l~~ge~P~~~gyp~~~f~~l~~l~ERag~~-------------~~GSIT~~~tv~~~~dd~~~pi~~~~~~i~dg~i~L 321 (422)
T TIGR02546 255 GLAAGEPPARGGYPPSVFSSLPRLLERAGNG-------------EKGSITALYTVLVEGDDMNDPIADEVRSILDGHIVL 321 (422)
T ss_pred HHhcCCCCcccccChhHHHHhHHHHHHhcCC-------------CCCceeEEEEEeccCCCCCCCchhhhhccccEEEEE
Confidence 9999999999999999999999999999973 179999999999999999999999999999999999
Q ss_pred ehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHHHhHHHHHHHhh
Q psy210 449 DTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQLYNGEKISLLMK 525 (915)
Q Consensus 449 sr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L~~~~~i~~fL~ 525 (915)
||+||++||||||||+.|+||+++.++.++|++++.++|+.|++|+|+++++++|. ++|++.|+++.+++++++||+
T Consensus 322 sr~la~~g~yPAId~~~S~SR~~~~~~~~~~~~~a~~~~~~l~~y~e~~~li~~g~y~~g~d~~~d~~i~~~~~i~~fl~ 401 (422)
T TIGR02546 322 SRALAERNHYPAIDVLASLSRVMSQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDPETDDAIDKIDAIRAFLR 401 (422)
T ss_pred cHHHHhCCCCCccCCccccccchhhhCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCCcCCCCHHHHHHHHhHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHH
Q psy210 526 QKPHENYSIVELIIILLII 544 (915)
Q Consensus 526 Q~~~e~~s~ee~l~~L~ai 544 (915)
|+.++++++++++..||.+
T Consensus 402 Q~~~~~~~~~~~~~~l~~~ 420 (422)
T TIGR02546 402 QSTDEYSPYEETLEQLHAL 420 (422)
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999965
No 65
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5.2e-84 Score=730.63 Aligned_cols=395 Identities=23% Similarity=0.312 Sum_probs=366.8
Q ss_pred hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceee
Q psy210 131 PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFI 210 (915)
Q Consensus 131 p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~Pi 210 (915)
...+++.+++....+. ..|||.|+++ + .+.+++++.+.+++.|++|.. ++++.+++++++||||+|++|+||
T Consensus 46 ~~~iGe~~~i~~~~~~-~~~eVv~~~~--~----~~~l~~~~~~~gi~~g~~v~~-~~~~~v~vg~~llGRV~d~~G~pi 117 (450)
T PRK06002 46 FVRLGDFVAIRADGGT-HLGEVVRVDP--D----GVTVKPFEPRIEIGLGDAVFR-KGPLRIRPDPSWKGRVINALGEPI 117 (450)
T ss_pred CCCCCCEEEEECCCCc-EEEEEEEEeC--C----eEEEEEccCCcCCCCCCEEEe-CCCceeecCcccccCEECCCCcCC
Confidence 3678999999543444 7789999998 3 347889999999999999999 668999999999999999999999
Q ss_pred cCCCcccccc-cccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEE
Q psy210 211 DNKKKFLIKN-RETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICI 289 (915)
Q Consensus 211 D~~~~~~~~~-~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V 289 (915)
|+++++.... +++++.++|++++|..+++++.||+++||.|+||++|||++|||++|+|||+| +.+|+.....+. ++
T Consensus 118 Dg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKTTL-L~~Ia~l~~pd~-gv 195 (450)
T PRK06002 118 DGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTL-LAMLARADAFDT-VV 195 (450)
T ss_pred CCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCe-ee
Confidence 9988776654 57999999999999999999999999999999999999999999999999999 788887776665 68
Q ss_pred EEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHH
Q psy210 290 YVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQIS 369 (915)
Q Consensus 290 ~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis 369 (915)
|+++|||++|+.+|.+..... .+++++.|++++|+||.+|+++||+|+|+||||||+|+|||+++|||||||+|+||||
T Consensus 196 v~liGergrev~e~~~~~l~~-~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEis 274 (450)
T PRK06002 196 IALVGERGREVREFLEDTLAD-NLKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVA 274 (450)
T ss_pred eeecccCCccHHHHhHHHHHH-hhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999865543 3789999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEee
Q psy210 370 LLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLD 449 (915)
Q Consensus 370 ~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Ls 449 (915)
+++||||+++||||++|+.||+|+||||+... ++||||+||+|++|+||++|||||++++|+|||||||
T Consensus 275 l~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~-----------~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLs 343 (450)
T PRK06002 275 LAAGEPPVARGYPPSVFSELPRLLERAGPGAE-----------GGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLD 343 (450)
T ss_pred HhcCCCCccccCCccHHHHhhHHHHHhccCCC-----------CCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEc
Confidence 99999999999999999999999999998521 2799999999999999999999999999999999999
Q ss_pred hhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHHhHHHHHHHhhc
Q psy210 450 TNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLYNGEKISLLMKQ 526 (915)
Q Consensus 450 r~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~~~~~i~~fL~Q 526 (915)
|+||++||||||||+.|+||+|+.++.++|++++.++|+.|++|+|+++|+++| .+.|++.|++++++++|++||+|
T Consensus 344 r~la~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~ig~y~~G~d~~~D~ai~~~~~i~~fL~Q 423 (450)
T PRK06002 344 RAIAEQGRYPAVDPLASISRLARHAWTPEQRKLVSRLKSMIARFEETRDLRLIGGYRAGSDPDLDQAVDLVPRIYEALRQ 423 (450)
T ss_pred HHHHhCCCCCccCCccccCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCChHHHHHHHhHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999998 48999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHhccc
Q psy210 527 KPHENYSIVELIIILLIIKNRF 548 (915)
Q Consensus 527 ~~~e~~s~ee~l~~L~ai~~G~ 548 (915)
+..|+.+ ++++..|..+..|.
T Consensus 424 ~~~~~~~-~~~~~~l~~~~~~~ 444 (450)
T PRK06002 424 SPGDPPS-DDAFADLAAALKGA 444 (450)
T ss_pred CCCCCCC-HHHHHHHHHHHhhH
Confidence 9999999 99999999765554
No 66
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.2e-84 Score=736.27 Aligned_cols=329 Identities=33% Similarity=0.525 Sum_probs=313.9
Q ss_pred hhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCC-CCCccCCCCCCccccc
Q psy210 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSK-KKSPIHTLPPKFSNQI 660 (915)
Q Consensus 582 v~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~-~~~pi~~~~p~~~~r~ 660 (915)
.+..|+++.+++++|+++.||+.|+.|+.+++++++|+|+++||||+|++|+|+|+++++... .++|++..||++++|.
T Consensus 39 eVv~~~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~ 118 (418)
T TIGR03498 39 EVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRA 118 (418)
T ss_pred EEEEEcCCeEEEEEccCCcCCCCCCEEEECCCccEEEeChhhcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhcc
Confidence 345799999999999999999999999999999999999999999999999999998776554 4589999999999999
Q ss_pred cccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccc
Q psy210 661 FNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD 740 (915)
Q Consensus 661 ~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~ 740 (915)
+++++++||+++||+++|+++|||++|||++|+|||+|+.+|+++.. ++..+|+++|||++|++||+++..+++.|+
T Consensus 119 ~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~ 195 (418)
T TIGR03498 119 RVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLK 195 (418)
T ss_pred CcccccCCccEEEeeeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999998887643 578899999999999999999866666799
Q ss_pred cEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHH
Q psy210 741 KVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820 (915)
Q Consensus 741 ~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~E 820 (915)
|||+|++|||+||.+|+++||+|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+|
T Consensus 196 ~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~E 275 (418)
T TIGR03498 196 RSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLE 275 (418)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHH
Q psy210 821 RISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVAN 898 (915)
Q Consensus 821 Rag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~ 898 (915)
|+|+. ++||||+||||++|+||++|||+|++++||||||||||+||++||||||||++|+||+| +.+++++|+++++
T Consensus 276 Rag~~~~~~GSIT~~~tVl~~gdd~~dpi~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~-~~~~~~~~~~~a~ 354 (418)
T TIGR03498 276 RAGPGAEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLA-PRVWSPEERKLVR 354 (418)
T ss_pred HhccCCCCCcceeeeEEEeccCCCCCCcchhhhheeeeeEEEECHHHHhCCCCCccCCcccccccc-hhhcCHHHHHHHH
Confidence 99964 58999999999999999999999999999999999999999999999999999999999 5889999999999
Q ss_pred HHHHHHHccHhhhhcc
Q psy210 899 EVKFYLQKYKELKDTS 914 (915)
Q Consensus 899 ~~r~~l~~~~e~~~~~ 914 (915)
++|++|++|+|+|++.
T Consensus 355 ~~r~~l~~y~e~~~~~ 370 (418)
T TIGR03498 355 RLRALLARYEETEDLI 370 (418)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 9999999999999986
No 67
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=2.4e-84 Score=734.18 Aligned_cols=331 Identities=32% Similarity=0.533 Sum_probs=318.8
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccc
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSN 658 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~ 658 (915)
..+| ..++++.+++++|+++.||+.|+.|+.+|+++++|+|+++||||+|++|+|||+.+++...++||+++.+|++++
T Consensus 35 ~~eV-v~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~ 113 (411)
T TIGR03496 35 EAEV-VGFRGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLK 113 (411)
T ss_pred EEEE-EEecCCEEEEEEccCccCCCCCCEEEECCCccEEEcchhhcCCEECCCCCCcCCCCCCCcccccccccCCCCHHh
Confidence 3455 578999999999999999999999999999999999999999999999999999988777788999999999999
Q ss_pred cccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 659 QIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 659 r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
|..+++++.||+++||.++|+++|||++|||++|+|||+|+.+|+++.. +++.+|++||||++|+.+|++++.+.++
T Consensus 114 R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~---~~~~vi~~iGer~~ev~e~~~~~~~~~~ 190 (411)
T TIGR03496 114 RAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTE---ADVVVVGLIGERGREVKEFIEDILGEEG 190 (411)
T ss_pred ccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEEecChHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999998887543 5788899999999999999999999999
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l 818 (915)
|+||++|++|||+||.+|+++||+|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|
T Consensus 191 ~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l 270 (411)
T TIGR03496 191 LARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQL 270 (411)
T ss_pred cceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHH
Q psy210 819 QERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKV 896 (915)
Q Consensus 819 ~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~ 896 (915)
+||+|+. ++||||+||||++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+| +.+++++|+++
T Consensus 271 ~ERag~~~~~~GSIT~~~tv~~~~dd~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~-~~~~~~~~~~~ 349 (411)
T TIGR03496 271 VERAGNGEEGKGSITAFYTVLVEGDDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVM-PDVVSPEHRQA 349 (411)
T ss_pred HHHhcccCCCCcceeEEEEEEccCCCCCCcchhhhcccccEEEEEchhHHhCCCCCccCCCcccccch-hhhCCHHHHHH
Confidence 9999984 68999999999999999999999999999999999999999999999999999999999 57899999999
Q ss_pred HHHHHHHHHccHhhhhcc
Q psy210 897 ANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 897 ~~~~r~~l~~~~e~~~~~ 914 (915)
++++|++|++|+|+|+++
T Consensus 350 a~~~r~~l~~y~e~~~l~ 367 (411)
T TIGR03496 350 ARRFKQLLSRYQENRDLI 367 (411)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 999999999999999986
No 68
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=1.6e-84 Score=693.06 Aligned_cols=270 Identities=30% Similarity=0.479 Sum_probs=259.9
Q ss_pred cccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccccccccccccceeeecccccccCCeeeeccCCCC
Q psy210 614 PILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGV 693 (915)
Q Consensus 614 ~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~ 693 (915)
+++||||+++||||+|++|+|+|+++++...+++|++.++|++++|.+++|+|+||||+||+|+|||||||+||||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 46899999999999999999999988876677889999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHH---hcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHH
Q psy210 694 GKTVNMMELIRNIA---IEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEF 770 (915)
Q Consensus 694 GKt~Ll~~i~~~~~---~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f 770 (915)
|||+|+.||+++.. +.+.++|||++||||+||+.||+++++++++|+||++|++|+|+||.+|++++|+|+++||||
T Consensus 81 GKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyf 160 (276)
T cd01135 81 PHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYL 160 (276)
T ss_pred ChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999998754 223589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHC-CCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCCCCc
Q psy210 771 RNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST--KNGTITSVQAIYVPADDLTDPS 847 (915)
Q Consensus 771 ~~~-g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi 847 (915)
||+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||+|+. ++||||+||||++++||++|||
T Consensus 161 rd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSITa~~~V~~~~dD~~dpi 240 (276)
T cd01135 161 AYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPI 240 (276)
T ss_pred HhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCCCCeeEEEEEEEEccCCCcCcch
Confidence 998 9999999999999999999999999999999999999999999999999986 4799999999999999999999
Q ss_pred ccccccccCcEEEeeHHHHhcCCCccccCCCCcccc
Q psy210 848 PSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQ 883 (915)
Q Consensus 848 ~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~ 883 (915)
+|++++||||||+|||+||++||||||||+.|+||+
T Consensus 241 ~~~~~si~DG~ivLsr~la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 241 PDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred HHHHHhhcceEEEEcHHHHhCCCCCCcCCcccccCC
Confidence 999999999999999999999999999999999995
No 69
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=4.1e-84 Score=731.74 Aligned_cols=328 Identities=28% Similarity=0.439 Sum_probs=316.0
Q ss_pred hhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccccc
Q psy210 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIF 661 (915)
Q Consensus 582 v~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~ 661 (915)
.+..|+++.+.+++|+++.||+.|++|..+|+++++|+|+++||||+|++|+|||++++. ...++|++..+|++++|..
T Consensus 56 eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~ 134 (433)
T PRK07594 56 EVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQP 134 (433)
T ss_pred EEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccEEEeChhhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccC
Confidence 346899999999999999999999999999999999999999999999999999998764 4466799999999999999
Q ss_pred ccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCcccc
Q psy210 662 NNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDK 741 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~ 741 (915)
+++++.||+++||.++|+++|||++|||++|+|||+|+.+|+++. +++.+||++||||++|+++|++.+.+.+.++|
T Consensus 135 v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~---~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~r 211 (433)
T PRK07594 135 ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAP---DADSNVLVLIGERGREVREFIDFTLSEETRKR 211 (433)
T ss_pred HhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHHHHHhcCCC---CCCEEEEEEECCCchHHHHHHHHhhccCCcce
Confidence 999999999999999999999999999999999999999888754 36789999999999999999999988999999
Q ss_pred EEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHH
Q psy210 742 VSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQER 821 (915)
Q Consensus 742 ~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ER 821 (915)
+++|++|+|+|+.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||
T Consensus 212 tv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ER 291 (433)
T PRK07594 212 CVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLER 291 (433)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHH
Q psy210 822 ISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVK 901 (915)
Q Consensus 822 ag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r 901 (915)
||+.++||||+||||++|+||++|||+|++++||||||||||+||++||||||||+.|+||+| +.+++++|+++++++|
T Consensus 292 ag~~~~GSIT~~~tVl~~gdD~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~-~~~~~~~h~~~a~~~r 370 (433)
T PRK07594 292 TGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF-PVVTSHEHRQLAAILR 370 (433)
T ss_pred hcCCCCcchheeeeeeecCCCCCCchHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccc-hhhCCHHHHHHHHHHH
Confidence 998889999999999999999999999999999999999999999999999999999999999 5899999999999999
Q ss_pred HHHHccHhhhhcc
Q psy210 902 FYLQKYKELKDTS 914 (915)
Q Consensus 902 ~~l~~~~e~~~~~ 914 (915)
++|++|+|+|+|.
T Consensus 371 ~~la~y~e~e~li 383 (433)
T PRK07594 371 RCLALYQEVELLI 383 (433)
T ss_pred HHHHcchHHHHHH
Confidence 9999999999986
No 70
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=6.1e-84 Score=731.33 Aligned_cols=332 Identities=36% Similarity=0.567 Sum_probs=317.4
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
...|| ..+.++.+++++|+++.||+.|+.|..+|+++++|+|+++||||+|++|+|+|+.+++...++||++..+|+++
T Consensus 34 ~~~eV-i~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~lLGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~ 112 (413)
T TIGR03497 34 VLAEV-VGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPL 112 (413)
T ss_pred EEEEE-EEEcCCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchhhcCCEEcCCCCcccCCCCCCCCccccccCCCcChH
Confidence 34555 57889999999999999999999999999999999999999999999999999988877777899999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|..+++++.||+++||.++|+++|||++|||++|+|||+|+.+|+++. ++++.++++||||++|++||+++..++.
T Consensus 113 ~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~---~~~~gvi~~~Ger~~ev~e~~~~~l~~~ 189 (413)
T TIGR03497 113 KRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA---KADINVIALIGERGREVRDFIEKDLGEE 189 (413)
T ss_pred HccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCeEEEEEEccchHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999888754 3578899999999999999999866555
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~ 817 (915)
.++||++|++|||+||.+|++++++|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++
T Consensus 190 ~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~ 269 (413)
T TIGR03497 190 GLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPK 269 (413)
T ss_pred ccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHH
Q psy210 818 LQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVA 897 (915)
Q Consensus 818 l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~ 897 (915)
|+||+|+.++||||+||||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+| +.+++++|++++
T Consensus 270 l~ERag~~~~GSIT~~~tVl~~gdD~~dpi~~~~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~-~~~~~~~~~~~a 348 (413)
T TIGR03497 270 LLERSGNSQKGSITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVM-NEIVSEEHKELA 348 (413)
T ss_pred HHHHhcCCCCcceeEEEEEEccCCCCCCcchhhccccccEEEEECHHHHhCCCCCccCCccccccCc-cccCCHHHHHHH
Confidence 9999999889999999999999999999999999999999999999999999999999999999999 578999999999
Q ss_pred HHHHHHHHccHhhhhcc
Q psy210 898 NEVKFYLQKYKELKDTS 914 (915)
Q Consensus 898 ~~~r~~l~~~~e~~~~~ 914 (915)
+++|++|++|+|+++++
T Consensus 349 ~~~r~~l~~y~e~~~li 365 (413)
T TIGR03497 349 GKLRELLAVYKEAEDLI 365 (413)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 99999999999999986
No 71
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.4e-84 Score=727.36 Aligned_cols=331 Identities=28% Similarity=0.447 Sum_probs=318.5
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeC-------CCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCC
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDT-------GKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHT 651 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~t-------g~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~ 651 (915)
..|| ..|+++.+.+++|+++.||+.|+.|+++ |+++++|||+++||||+|++|+|+|+++++...+++|++.
T Consensus 66 ~~eV-vg~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~ 144 (455)
T PRK07960 66 ESEV-VGFNGQRLFLMPLEEVEGILPGARVYARNISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALIT 144 (455)
T ss_pred eeeE-EEecCCEEEEEECCCccCCCCCCEEEECCcccccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccC
Confidence 3456 4899999999999999999999999999 9999999999999999999999999998877667789999
Q ss_pred CCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHH
Q psy210 652 LPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYH 731 (915)
Q Consensus 652 ~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~ 731 (915)
.||+|++|.+++++++||||+||+|+|+++|||++|||++|+|||+|+.+|+++. +++++|+++||||++|+.+|++
T Consensus 145 ~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~---~~d~iv~g~Igerg~ev~e~~~ 221 (455)
T PRK07960 145 PPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT---QADVIVVGLIGERGREVKDFIE 221 (455)
T ss_pred CCcChHHhcccccchhccceeeeecccccCCcEEEEECCCCCCccHHHHHHhCCC---CCCEEEEEEEEECCeEHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988754 3578899999999999999999
Q ss_pred HhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchh
Q psy210 732 EMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTL 811 (915)
Q Consensus 732 ~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l 811 (915)
++.+.+.+++++||++++|+||.+|++++++|+++||||||+|+|||+++||+||||+|+||||+++||+|+++||||++
T Consensus 222 ~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~ 301 (455)
T PRK07960 222 NILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSV 301 (455)
T ss_pred hhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCC
Q psy210 812 AEEMGKLQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIV 889 (915)
Q Consensus 812 ~~~l~~l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~ 889 (915)
|+.|++|+||+|+. ++||||+||||++|+||++|||+|++++|+||||||||+||++||||||||+.|+||+|+ .++
T Consensus 302 f~~l~~l~ERag~~~~~~GSIT~i~tVlv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~-~~~ 380 (455)
T PRK07960 302 FAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMT-ALI 380 (455)
T ss_pred hhhhhHHHHHHhcCCCCCeeeeeEEEEEEcCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCcc-ccC
Confidence 99999999999985 689999999999999999999999999999999999999999999999999999999995 689
Q ss_pred CHHHHHHHHHHHHHHHccHhhhhcc
Q psy210 890 GEEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 890 ~~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
+++|++.++++|++|+.|+|+|+|.
T Consensus 381 ~~~~~~~~~~~r~~l~~Y~~~~dli 405 (455)
T PRK07960 381 DEQHYARVRQFKQLLSSFQRNRDLV 405 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985
No 72
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=1.3e-83 Score=726.79 Aligned_cols=330 Identities=30% Similarity=0.449 Sum_probs=316.2
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCC--CCC--CCCCCccCCCCCC
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKG--EIN--SKKKSPIHTLPPK 655 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~--~~~--~~~~~pi~~~~p~ 655 (915)
.+| ..|+++.+.+++|+++.||+.|++|..+++++++|+|+++||||+|++|+|+|+.+ +.. ..+++|++..||+
T Consensus 46 ~ev-v~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~ 124 (428)
T PRK08149 46 AQV-VGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPS 124 (428)
T ss_pred EEE-EEeeCcEEEEEECCCccCCCCCCEEEEcCCcCEEEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCc
Confidence 344 58999999999999999999999999999999999999999999999999999886 332 2467899999999
Q ss_pred ccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh
Q psy210 656 FSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE 735 (915)
Q Consensus 656 ~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~ 735 (915)
+++|.++++++.||+++||.++|+++|||++|||++|+|||||+.+|+++. +++++|+++||+|++|+++|++++.+
T Consensus 125 ~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~---~~dv~v~g~Ig~rg~ev~e~~~~~l~ 201 (428)
T PRK08149 125 YAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHS---EADVFVIGLIGERGREVTEFVESLRA 201 (428)
T ss_pred chhccCccccccCCcEEEeeeeeEecCCEEEEECCCCCChhHHHHHHhcCC---CCCeEEEEEEeeCCccHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998753 36888999999999999999999999
Q ss_pred cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHH
Q psy210 736 SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815 (915)
Q Consensus 736 ~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l 815 (915)
.+.++|+++|++|||+||.+|++++|+|+++||||||+||||||++||+||||+|+||||+++||||+++||||++|+.|
T Consensus 202 ~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l 281 (428)
T PRK08149 202 SSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSL 281 (428)
T ss_pred cccccceEEEEECCCCCHHHHHhHHHHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHH
Q psy210 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895 (915)
Q Consensus 816 ~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~ 895 (915)
++|+||+|+.++||||+||||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+ .+++++|++
T Consensus 282 ~~l~ERag~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~-~~~~~~~~~ 360 (428)
T PRK08149 282 PRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFG-QVTDPKHRQ 360 (428)
T ss_pred HHHHHhccCCCCCCceEEEEEEecCCCCCCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccchh-hhcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 789999999
Q ss_pred HHHHHHHHHHccHhhhhcc
Q psy210 896 VANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 896 ~~~~~r~~l~~~~e~~~~~ 914 (915)
+++++|++|++|+|+|+|+
T Consensus 361 ~a~~~r~~l~~y~e~e~li 379 (428)
T PRK08149 361 LAAAFRKLLTRLEELQLFI 379 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 73
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=2.8e-83 Score=724.09 Aligned_cols=328 Identities=26% Similarity=0.383 Sum_probs=315.0
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
.+| ..|+++.+.+++|+++.||+.|++|..+++++++|+|+++||||+|++|+|+|+.+++....++|++..+|++++|
T Consensus 56 ~eV-v~~~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R 134 (434)
T PRK05922 56 AEV-IGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSR 134 (434)
T ss_pred EEE-EEEeCCeEEEEEccCCCCCCCCCEEEeCCCCcEEEcChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhc
Confidence 344 6899999999999999999999999999999999999999999999999999998877766778999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCcc
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVL 739 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~ 739 (915)
.+++++++||||+||+++|+++|||++|||++|+|||+|+.+|+++. ++++++|++||||++|+.+|++.+.+...+
T Consensus 135 ~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~---~~d~gvi~liGerg~ev~eyl~q~~~~~~~ 211 (434)
T PRK05922 135 QPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS---KSTINVIALIGERGREVREYIEQHKEGLAA 211 (434)
T ss_pred CCcceecCCCceeecceEEEcCCcEEEEECCCCCChHHHHHHHhccC---CCCceEEEEeCCCCchHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999998764 368899999999999999999988888889
Q ss_pred ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHH
Q psy210 740 DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819 (915)
Q Consensus 740 ~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ 819 (915)
++|++|+||||+||.+|++++++|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|++|++|+
T Consensus 212 ~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ 291 (434)
T PRK05922 212 QRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFT 291 (434)
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHH
Q psy210 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANE 899 (915)
Q Consensus 820 ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~ 899 (915)
||||+.++||||+||||++++| ..|||+|++++||||||||||+|++++ |||||+++|+||+| +.+++++|++++.+
T Consensus 292 ERag~~~~GSIT~~~tVl~~~~-~~dpi~d~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~-~~~~~~~~~~~a~~ 368 (434)
T PRK05922 292 ERAGNNDKGSITALYAILHYPN-HPDIFTDYLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSA-RQLALPHHYAAAEE 368 (434)
T ss_pred HhhcCCCCcceeEEEEEEecCC-CCCccccchhhhcCcEEEEcHHHHhCC-CCCcCCccccccCC-ccccCHHHHHHHHH
Confidence 9999988999999999999998 789999999999999999999999987 99999999999999 57889999999999
Q ss_pred HHHHHHccHhhhhcc
Q psy210 900 VKFYLQKYKELKDTS 914 (915)
Q Consensus 900 ~r~~l~~~~e~~~~~ 914 (915)
+|++|++|+|+|++.
T Consensus 369 ~r~~l~~y~e~edli 383 (434)
T PRK05922 369 LRSLLKAYHEALDII 383 (434)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
No 74
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.6e-83 Score=725.45 Aligned_cols=330 Identities=31% Similarity=0.482 Sum_probs=316.2
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccc
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSN 658 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~ 658 (915)
..+ +..|+++.+.+++|+++.||+.|++|+.+++++++|+|++|||||+|++|+|+|+++++...+++|++..||++++
T Consensus 55 ~~e-Vv~~~~~~~~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~ 133 (434)
T PRK08472 55 LGM-VVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMK 133 (434)
T ss_pred EEE-EEEEeCCeEEEEEccCCCCCCCCCEEEeCCCceEEEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHH
Confidence 345 4699999999999999999999999999999999999999999999999999999988776677899999999999
Q ss_pred cccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 659 QIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 659 r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
|.++++++.||+++||.++|+++|||++|||++|+|||+|+.+|+++.. .+++||++||||++|+++|++.... +.
T Consensus 134 R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v~vi~~iGergrev~e~~~~~l~-~~ 209 (434)
T PRK08472 134 RGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---APIKVVALIGERGREIPEFIEKNLG-GD 209 (434)
T ss_pred cCCcceeccchhHHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCEEEEEeeCccchhHHHHHHHHhc-Cc
Confidence 9999999999999999999999999999999999999999999998753 5789999999999999999986554 34
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l 818 (915)
++|+++|++|||+||.+|++++++|+++||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|
T Consensus 210 l~~tvvV~atsddsp~~R~~~~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l 289 (434)
T PRK08472 210 LENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQL 289 (434)
T ss_pred ccceEEEEECCCCCHHHhhHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC-CCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHH
Q psy210 819 QERISSTK-NGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVA 897 (915)
Q Consensus 819 ~ERag~~~-~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~ 897 (915)
+||||+.+ +||||+||||++|+||++|||+|++++|+||||||||+||++||||||||++|+||+|+ .+++++|++++
T Consensus 290 ~ERag~~~g~GSIT~~~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~-~~~~~~~~~~a 368 (434)
T PRK08472 290 MERAGKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMN-DIISPEHKLAA 368 (434)
T ss_pred HHHhccCCCCceeeEeEEEEecCCCCCCCchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccch-hcCCHHHHHHH
Confidence 99999987 89999999999999999999999999999999999999999999999999999999995 79999999999
Q ss_pred HHHHHHHHccHhhhhcc
Q psy210 898 NEVKFYLQKYKELKDTS 914 (915)
Q Consensus 898 ~~~r~~l~~~~e~~~~~ 914 (915)
+++|++|++|+|+|+|+
T Consensus 369 ~~~r~~l~~y~e~e~li 385 (434)
T PRK08472 369 RKFKRLYSLLKENEVLI 385 (434)
T ss_pred HHHHHHHHhchhHHHHH
Confidence 99999999999999986
No 75
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=1.5e-83 Score=686.00 Aligned_cols=273 Identities=68% Similarity=1.073 Sum_probs=265.1
Q ss_pred ceeccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCC
Q psy210 190 FEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTG 269 (915)
Q Consensus 190 ~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~G 269 (915)
+++|+++.+|||++|++|+|||+++++...++|+++.++|++++|..+++||+|||++||.|+|||||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 57899999999999999999999988877778899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCC
Q psy210 270 KTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQ 349 (915)
Q Consensus 270 Kt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~ 349 (915)
||+|++++|++|+++|++|||++||||++|+.+|++++++.++++||++|++++|+||.+|+++||+|||+|||||++|+
T Consensus 82 Kt~L~l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~ 161 (274)
T cd01132 82 KTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGK 161 (274)
T ss_pred ccHHHHHHHHHhcCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCC
Q psy210 350 DCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGD 429 (915)
Q Consensus 350 ~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d 429 (915)
||||++|||||||+|+||||+++||||+++||||++|++|++|+||||++++.. ++||||++|+|++|+||
T Consensus 162 ~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~---------~~GSIT~i~~V~~~~dD 232 (274)
T cd01132 162 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEL---------GGGSLTALPIIETQAGD 232 (274)
T ss_pred CEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCC---------CCcceEEEEEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999986422 27999999999999999
Q ss_pred CCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccc
Q psy210 430 VTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVG 471 (915)
Q Consensus 430 ~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~ 471 (915)
++|||||+++||+||||+|||+||++||||||||+.|+||++
T Consensus 233 ~~~pi~~~~~~i~dg~ivLsr~la~~g~yPaId~l~S~SR~g 274 (274)
T cd01132 233 VSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274 (274)
T ss_pred cCcchHHHHHhhcCeEEEEcHHHHhCCCCCCcCCcccccCCC
Confidence 999999999999999999999999999999999999999986
No 76
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=3.1e-82 Score=722.62 Aligned_cols=401 Identities=27% Similarity=0.358 Sum_probs=373.3
Q ss_pred eeEEEEeecChhhcccccccccC--CCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccc
Q psy210 121 AYNIEYDYFDPRCLNQTLNIKFA--NNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFEL 198 (915)
Q Consensus 121 g~~~~~~~~~p~~L~~~le~~~~--~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~l 198 (915)
|..++..... ..+++.++++.. .+. ..|+|.++++ + -+.+++++.+.+++.|++|.+||+++++|+|+++
T Consensus 32 G~~v~~~~~~-~~~ge~~~i~~~~~~~~-~~~eVi~~~~--~----~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~l 103 (440)
T TIGR01026 32 GLLIEAVGPQ-ASVGDLCLIERRGSEGR-LVAEVVGFNG--E----FVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGL 103 (440)
T ss_pred eeEEEEEcCC-CCcCCEEEEeecCCCCc-EEEEEEEecC--C----EEEEEEccCCcCCCCCCEEEeCCCccEEEcChhh
Confidence 5666665543 459999998532 332 6789999998 3 3478899999999999999999999999999999
Q ss_pred ceeEeCCCceeecCCC-cccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHH
Q psy210 199 LGRIVNSKGEFIDNKK-KFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDT 277 (915)
Q Consensus 199 LGrviD~lG~PiD~~~-~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~ 277 (915)
||||+|++|+|||+.+ ++.....++++.+||||+.|.++++|+.||+++||.++|+++|||++|+|++|+|||+| +++
T Consensus 104 lGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStL-l~~ 182 (440)
T TIGR01026 104 LGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTL-LGM 182 (440)
T ss_pred hhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCCHHHH-HHH
Confidence 9999999999999987 55555567899999999999999999999999999999999999999999999999999 799
Q ss_pred HHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEecc
Q psy210 278 IINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDD 357 (915)
Q Consensus 278 i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Dd 357 (915)
|+++.+.++ .++++||+|++|+.+|++++...+.++|+++|++++|+||.+|+++|++|+|+|||||++|+|||+++||
T Consensus 183 I~~~~~~~~-~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~Ds 261 (440)
T TIGR01026 183 IARNTEADV-NVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDS 261 (440)
T ss_pred HhCCCCCCE-EEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 999888886 5789999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccc
Q psy210 358 LTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTN 437 (915)
Q Consensus 358 ltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~ 437 (915)
|||||+|+||||+++||||+++||||++|+.+++|+||||.. | +||||+||+|++++||++|||+|+
T Consensus 262 lTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~----~---------~GSIT~i~tVl~~~~d~~dpi~d~ 328 (440)
T TIGR01026 262 VTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGAS----G---------KGSITAFYTVLVEGDDMNEPIADS 328 (440)
T ss_pred hHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccC----C---------CCeeeEEEEEEccCcCCCcchhhh
Confidence 999999999999999999999999999999999999999943 1 799999999999999999999999
Q ss_pred cccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHH
Q psy210 438 VISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQL 514 (915)
Q Consensus 438 ~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L 514 (915)
+++|+||||+|||+||++||||||||+.|+||+++.++.++|++++.++|+.|++|+|+++|+++|. +.|+++|+++
T Consensus 329 ~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~ig~y~~g~d~~~d~~i 408 (440)
T TIGR01026 329 VRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYKDNEDLIRIGAYQRGSDRELDFAI 408 (440)
T ss_pred hccccceEEEEecchhhCCccCccCCCcccccCccccCCHHHHHHHHHHHHHHHhhHHHHHHHHhhccccCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999983 6799999999
Q ss_pred HhHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 515 YNGEKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 515 ~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
.++++|++||+|+.+++++++++++.|..+
T Consensus 409 ~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~ 438 (440)
T TIGR01026 409 AKYPKLERFLKQGINEKVNFEESLQQLEEI 438 (440)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999988854
No 77
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=4.5e-83 Score=682.01 Aligned_cols=270 Identities=29% Similarity=0.428 Sum_probs=258.1
Q ss_pred cceeccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCC
Q psy210 189 IFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQT 268 (915)
Q Consensus 189 ~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~ 268 (915)
++++|+|+++||||+|++|+|||+++++...++++++.++|+|++|..+++||+||||+||.|+|||||||++|||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 46899999999999999999999998877777889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhhcC-----CCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHH
Q psy210 269 GKTTIAIDTIINQKN-----KNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEY 343 (915)
Q Consensus 269 GKt~l~l~~i~~~~~-----~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy 343 (915)
|||+| +.+|++|++ .+.+|||++||||++|+.+|++++++.++++||++|++++|+||.+|+++||+|||+|||
T Consensus 81 GKt~L-~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEy 159 (276)
T cd01135 81 PHNEL-AAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEY 159 (276)
T ss_pred ChhHH-HHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 99999 567888864 245699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEE
Q psy210 344 FRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPI 422 (915)
Q Consensus 344 ~r~~-g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~ 422 (915)
||++ |+|||++||||||||+|+||||+++||||+++|||||+|+.||+|+||||++++ ++||||+||+
T Consensus 160 frd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~-----------~~GSITa~~~ 228 (276)
T cd01135 160 LAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEG-----------RNGSITQIPI 228 (276)
T ss_pred HHhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCC-----------CCeeEEEEEE
Confidence 9997 999999999999999999999999999999999999999999999999999742 1699999999
Q ss_pred EEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccc
Q psy210 423 IETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470 (915)
Q Consensus 423 v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~ 470 (915)
|++|+||++|||||+++|||||||||||+||++||||||||+.|+||+
T Consensus 229 V~~~~dD~~dpi~~~~~si~DG~ivLsr~la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 229 LTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred EEccCCCcCcchHHHHHhhcceEEEEcHHHHhCCCCCCcCCcccccCC
Confidence 999999999999999999999999999999999999999999999996
No 78
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=6.9e-82 Score=673.24 Aligned_cols=267 Identities=26% Similarity=0.441 Sum_probs=254.5
Q ss_pred ccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccccccccccccceeeecccccccCCeeeeccCCCCC
Q psy210 615 ILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVG 694 (915)
Q Consensus 615 ~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~G 694 (915)
+++|||+++||||+|++|+|+|+++++...++||++..+|++++|..++++|+||||+||+|+|||||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 57999999999999999999999988777788999999999999999999999999999999999999999999999999
Q ss_pred hhhH-HHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC
Q psy210 695 KTVN-MMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS 773 (915)
Q Consensus 695 Kt~L-l~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~ 773 (915)
||+| +.+|+++ + ++..+|||++||||++|++||++++++.++++||++|++|+|+||.+|++++|+|+++||||||+
T Consensus 82 Kt~L~l~~i~~~-~-~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~ 159 (274)
T cd01132 82 KTAIAIDTIINQ-K-GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDN 159 (274)
T ss_pred ccHHHHHHHHHh-c-CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHC
Confidence 9999 4656554 2 22345699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCccc
Q psy210 774 GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST----KNGTITSVQAIYVPADDLTDPSPS 849 (915)
Q Consensus 774 g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~ 849 (915)
||||||++||+||||+|+||||+++||+|+++||||++|+.|++|+||+|+. ++||||+|++|++|+||++|||+|
T Consensus 160 G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSIT~i~~V~~~~dD~~~pi~~ 239 (274)
T cd01132 160 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTALPIIETQAGDVSAYIPT 239 (274)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcceEEEEEEEcCCCCcCcchHH
Confidence 9999999999999999999999999999999999999999999999999975 589999999999999999999999
Q ss_pred ccccccCcEEEeeHHHHhcCCCccccCCCCcccc
Q psy210 850 TTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQ 883 (915)
Q Consensus 850 ~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~ 883 (915)
++++||||||+|||+||++||||||||+.|+||+
T Consensus 240 ~~~~i~dg~ivLsr~la~~g~yPaId~l~S~SR~ 273 (274)
T cd01132 240 NVISITDGQIFLETDLFNKGIRPAINVGLSVSRV 273 (274)
T ss_pred HHHhhcCeEEEEcHHHHhCCCCCCcCCcccccCC
Confidence 9999999999999999999999999999999997
No 79
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=4.6e-82 Score=682.57 Aligned_cols=416 Identities=24% Similarity=0.344 Sum_probs=393.1
Q ss_pred cChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCC-cccccCccceeccccccceeEeCCCc
Q psy210 129 FDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQ-KCFCTEKIFEIPVGFELLGRIVNSKG 207 (915)
Q Consensus 129 ~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~-~V~~tg~~~~vpvg~~lLGrviD~lG 207 (915)
+....+++.++++..+|..+.|||+.+.+ ..+ ++++|+++.|+...+ .|+++|+++.+++++++|||++|++|
T Consensus 23 ~eg~~y~E~v~i~~~~G~~r~gqVle~~~--~~a----~vQVfegT~Gl~~~~t~vrF~g~~l~i~vs~dllGRifnG~G 96 (463)
T COG1156 23 VEGASYGELVEIETPDGEVRRGQVLEVRG--DKA----VVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSG 96 (463)
T ss_pred ccCCCcceEEEEECCCCCeeeeeEeeccC--ceE----EEEEeecccCCCCCCceEEEeCceEEEeecHHhhhhhhcCCC
Confidence 34568999999999999999999999998 433 789999999999555 59999999999999999999999999
Q ss_pred eeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc-----
Q psy210 208 EFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK----- 282 (915)
Q Consensus 208 ~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~----- 282 (915)
+|||+++.+.+++..++++.|.||..|..+.++++|||++||.|++++||||++||+++|-....|| ..|++|+
T Consensus 97 ~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~La-aqIarQA~v~~~ 175 (463)
T COG1156 97 KPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELA-AQIARQATVDGE 175 (463)
T ss_pred CcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHHH-HHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999884 5688885
Q ss_pred CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHH-hcCCcEEEEeccchhH
Q psy210 283 NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKH 361 (915)
Q Consensus 283 ~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r-~~g~~Vlv~~Ddltr~ 361 (915)
..++.+||+++|.+.+|..+|.++|+++|+++|+++|.+.+++|+++|..+|.+|+|+||||+ ++++||||++.|||+|
T Consensus 176 ~e~favVfaamGit~eea~fF~~~fe~tGal~r~vlflnlA~dp~vEri~tPr~aLt~AEylA~e~~~hVLVilTDMTny 255 (463)
T COG1156 176 EEEFAVVFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEKDMHVLVILTDMTNY 255 (463)
T ss_pred ccceeEEEeecCccHHHHHHHHHHHHhhhhhhhhHhhhhccCCCceeEecchhHHHHHHHHHhccCCceEEEEEcchhHH
Confidence 356779999999999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccc
Q psy210 362 AWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISI 441 (915)
Q Consensus 362 a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i 441 (915)
|+|+||||.+.+|.|+++||||+||+++|.+|||||++++ + +||||++|+.+||+||+||||||+|++|
T Consensus 256 ceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g---~--------~GSiTqipIlTMP~DDITHPIPDlTGYI 324 (463)
T COG1156 256 CEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRG---R--------KGSITQIPILTMPGDDITHPIPDLTGYI 324 (463)
T ss_pred HHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceecc---C--------CCceEEEEeeecCCCCcCCCCCccccee
Confidence 9999999999999999999999999999999999999964 3 8999999999999999999999999999
Q ss_pred cCcEEEeehhhhhcCCCCeeeecCCcccccccc-----ccHHHHHHHHHHHHHHHhhHHHHhhhhcc--CCCCHHHHHHH
Q psy210 442 TDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA-----QYKIVKKLSGDIRIMLAQYRELESFSKFS--SDLDIVTKTQL 514 (915)
Q Consensus 442 ~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~-----~~~~~~~~a~~lr~~la~~~e~e~l~~lG--~~ld~~~~~~L 514 (915)
|+|||+|||+|.++|+||+||++.|+||+|... ..++|.++++|+.+.||+.++++++..++ +.|++.++++|
T Consensus 325 TEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~avvge~aLs~~D~~~l 404 (463)
T COG1156 325 TEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAVVGEEALSERDRKYL 404 (463)
T ss_pred ccceEEEEhhcccCCcCCCccccccHHHHhhcccCCCccccccHHHHHHHHHHHhcchhHHHHHHHhhhhhcchhHHHHH
Confidence 999999999999999999999999999998443 45899999999999999999999999876 68999999999
Q ss_pred HhHHHHH-HHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Q psy210 515 YNGEKIS-LLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIK 566 (915)
Q Consensus 515 ~~~~~i~-~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~ 566 (915)
++++.|+ +|++|+.++++++++++++.| .+|..+|.+++..+..++++
T Consensus 405 ~F~d~FE~~fi~qg~~enrsieetLdlgW----~lL~~lp~~el~ri~~~~I~ 453 (463)
T COG1156 405 KFADLFEQRFIKQGRYENRSIEETLDLGW----ELLSILPESELTRIKPDLID 453 (463)
T ss_pred HHHHHHHHHHHhcccccCCCHHHHHHHhH----HHHHhCCHhHhccCCHHHHH
Confidence 9999996 799999999999999999999 67999999999999998885
No 80
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.8e-80 Score=698.46 Aligned_cols=388 Identities=24% Similarity=0.325 Sum_probs=363.2
Q ss_pred hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceee
Q psy210 131 PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFI 210 (915)
Q Consensus 131 p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~Pi 210 (915)
...+++.+++. ++- ..|+|.+.++ +. +.+++++.+.+++.|++|.++++++++|+++.+||||+|++|+|+
T Consensus 39 ~~~ige~~~i~--~~~-~~~eV~~~~~--~~----~~~~~~~~~~gi~~g~~v~~~~~~~~v~vg~~~lGrV~d~~G~pi 109 (432)
T PRK06793 39 KAKIGDVCFVG--EHN-VLCEVIAIEK--EN----NMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVL 109 (432)
T ss_pred CCCcCCEEEEC--CCC-EEEEEEEecC--Cc----EEEEEccCccCCCCCCEEEECCCccEEEcCHhhccCEECcCCccC
Confidence 55799999984 333 6789999998 32 377899999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEE
Q psy210 211 DNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIY 290 (915)
Q Consensus 211 D~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~ 290 (915)
|+++++.....++++.+||+|++|..+++++.||+++||.++|+++|||++|||++|+|||+| +.+|+.+...+. .++
T Consensus 110 D~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtL-l~~Ia~~~~~~~-gvI 187 (432)
T PRK06793 110 NEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTL-LGMIAKNAKADI-NVI 187 (432)
T ss_pred CCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHH-HHHHhccCCCCe-EEE
Confidence 998776666678999999999999999999999999999999999999999999999999999 788888776665 467
Q ss_pred EeeccchhhHHHHHHH-HhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHH
Q psy210 291 VCIGQKISSLINVINK-LKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQIS 369 (915)
Q Consensus 291 ~~iGer~~ev~~~~~~-l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis 369 (915)
+++|||++|+.+|++. +.+.+ ++|+++|++++|+|+.+|++++++|+++|||||++|+|||+++||+||||+|+|||+
T Consensus 188 ~~iGerg~ev~e~~~~~l~~~g-l~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reis 266 (432)
T PRK06793 188 SLVGERGREVKDFIRKELGEEG-MRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVD 266 (432)
T ss_pred EeCCCCcccHHHHHHHHhhhcc-cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHH
Confidence 8999999999999885 55555 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEee
Q psy210 370 LLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLD 449 (915)
Q Consensus 370 ~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Ls 449 (915)
++++|||+. |||+++|+.+++|+||||+.+ +||||++|+|++|+||++|||||+++||+|||||||
T Consensus 267 l~~~e~p~~-G~~~~~~s~l~~L~ERag~~~-------------~GSiT~~~tvlv~~dD~~dpI~d~~~si~DG~ivLs 332 (432)
T PRK06793 267 IAVKELPIG-GKTLLMESYMKKLLERSGKTQ-------------KGSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLK 332 (432)
T ss_pred HHhcCCCCC-CeeeeeeccchhHHHHhccCC-------------CcceEEEEEEEecCCCCCCcchHHhhhhcceEEEEc
Confidence 999999996 999999999999999999862 699999999999999999999999999999999999
Q ss_pred hhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhcc---CCCCHHHHHHHH-hHHHHHHHhh
Q psy210 450 TNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFS---SDLDIVTKTQLY-NGEKISLLMK 525 (915)
Q Consensus 450 r~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG---~~ld~~~~~~L~-~~~~i~~fL~ 525 (915)
|+||++||||||||+.|+||+|+.++.++|++++..+|+.|++|+|+|+++++| .+.|++.+++++ ++++|++||+
T Consensus 333 r~la~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~e~~i~~g~y~~g~~~~~d~ai~~~~~~i~~fl~ 412 (432)
T PRK06793 333 RELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENAYIFECKNKVEGINTFLK 412 (432)
T ss_pred HHHHhCCCCCccCCCcccCcCccccCCHHHHHHHHHHHHHHHhChHHHHHHHhCCccCCCCHHHHHHHHHhHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999998 489999999999 9999999999
Q ss_pred cCCCCCccHHHHHHHHHHH
Q psy210 526 QKPHENYSIVELIIILLII 544 (915)
Q Consensus 526 Q~~~e~~s~ee~l~~L~ai 544 (915)
|+..++.++++++..|..+
T Consensus 413 Q~~~~~~~~~~~~~~l~~~ 431 (432)
T PRK06793 413 QGRSDSFQFDDIVEAMHHI 431 (432)
T ss_pred CCCCCCCCHHHHHHHHHhh
Confidence 9999999999999988753
No 81
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.1e-80 Score=704.14 Aligned_cols=332 Identities=28% Similarity=0.438 Sum_probs=314.8
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccc
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSN 658 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~ 658 (915)
..|| ..|+++.+.+++|++++||+.|++|..+++++++|+|++|||||+|++|+|+|+++++.....+|++.++|||++
T Consensus 53 ~~eV-v~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~ 131 (434)
T PRK07196 53 EAQV-VGFDRDITYLMPFKHPGGVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQ 131 (434)
T ss_pred EEEE-EEecCCEEEEEECCCccCCCCCCEEEECCCccEEEcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHH
Confidence 3455 589999999999999999999999999999999999999999999999999999987766667899999999999
Q ss_pred cccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 659 QIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 659 r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
|.+++++++||+++||.++|+++|||++|||++|+|||||+.+|++.. ++++.|+++||+|++|+.+|+++...+..
T Consensus 132 R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~---~~dv~vig~IGerg~ev~ef~~~~l~~~g 208 (434)
T PRK07196 132 RRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYT---QADVVVVGLIGERGREVKEFIEHSLQAAG 208 (434)
T ss_pred hcccccccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhccc---CCCeEEEEEEeeecHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999888754 25788889999999999999987555555
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l 818 (915)
+.|++++++++|+|+.+|+.++++++++||||+++|+|||++|||+||||+|+||||+++||||+++||||++|+.|++|
T Consensus 209 l~rsvvv~~~~d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l 288 (434)
T PRK07196 209 MAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRL 288 (434)
T ss_pred cceEEEEEecCCCChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC-CCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHH
Q psy210 819 QERISSTK-NGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVA 897 (915)
Q Consensus 819 ~ERag~~~-~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~ 897 (915)
+||+|+.. +||||+||||++|+||++|||+|++++||||||||||+||++||||||||+.|+||+|+ .+++++|++++
T Consensus 289 ~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~-~~~~~~~~~~a 367 (434)
T PRK07196 289 AESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMS-QVIGSQQAKAA 367 (434)
T ss_pred HHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccch-hccCHHHHHHH
Confidence 99999875 79999999999999999999999999999999999999999999999999999999995 88999999999
Q ss_pred HHHHHHHHccHhhhhccC
Q psy210 898 NEVKFYLQKYKELKDTST 915 (915)
Q Consensus 898 ~~~r~~l~~~~e~~~~~~ 915 (915)
.++|++|++|+|+|+|++
T Consensus 368 ~~~r~~~a~y~e~~~li~ 385 (434)
T PRK07196 368 SLLKQCYADYMAIKPLIP 385 (434)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999863
No 82
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1e-80 Score=665.55 Aligned_cols=338 Identities=70% Similarity=1.088 Sum_probs=332.5
Q ss_pred chhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCC--CCCccCCCCC
Q psy210 577 ISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSK--KKSPIHTLPP 654 (915)
Q Consensus 577 ~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~--~~~pi~~~~p 654 (915)
+...||+++++++.|+.+++++++||.+|+.|..||+|++||||++.||||+|++|+|+|+.+++... .+||+++.+|
T Consensus 40 ~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VPVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p 119 (468)
T COG0055 40 TLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAP 119 (468)
T ss_pred eEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEecchhhcccchhccCCcccccCCCCccccceeeccCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999888765 8899999999
Q ss_pred CccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhh
Q psy210 655 KFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMK 734 (915)
Q Consensus 655 ~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~ 734 (915)
...+..+..|.|+||||+||+|+|+.||.|+|+||++|+|||+|++++++|+++.|....||+++|||.||..|++.+++
T Consensus 120 ~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~ 199 (468)
T COG0055 120 SFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMK 199 (468)
T ss_pred chhhcccchhhhhhCceEEEEecccccCceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC-CCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhH
Q psy210 735 ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAE 813 (915)
Q Consensus 735 ~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~ 813 (915)
++++++||++|++++||||+.|+|++.+++|+||||||+ |+|||+++||++||.+|..|+|.++|++|+..||+|.|.+
T Consensus 200 es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLat 279 (468)
T COG0055 200 ESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAT 279 (468)
T ss_pred hcCCCCceeEEEeecCCCCcceeeehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHH
Confidence 999999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHH
Q psy210 814 EMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEH 893 (915)
Q Consensus 814 ~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~ 893 (915)
++..|.||..++++||||++++|++|+||+|||.|..+|+++|.+++|||++|+.|+|||||||.|.||.++|.++|++|
T Consensus 280 emg~lQERItstk~GSITSiQavyvPaDDlTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivGe~H 359 (468)
T COG0055 280 EMGQLQERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEH 359 (468)
T ss_pred HHHHHHHHHhcCCCCceEEEEEEEeccccCCCcchhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccHhhhhcc
Q psy210 894 YKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 894 ~~~~~~~r~~l~~~~e~~~~~ 914 (915)
+++|.+++++|++|+||+||.
T Consensus 360 y~va~~vq~iLqrYkeLqDII 380 (468)
T COG0055 360 YEVAREVQSILQRYKELQDII 380 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999974
No 83
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=2.7e-80 Score=680.23 Aligned_cols=323 Identities=32% Similarity=0.468 Sum_probs=314.0
Q ss_pred cceeccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCC
Q psy210 189 IFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQT 268 (915)
Q Consensus 189 ~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~ 268 (915)
++++|+++++||||+|++|+|||+.+++....+++++.++|+|++|..+++|+.||+++||.++|+++|||++|||++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 46899999999999999999999998877777899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcC
Q psy210 269 GKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLG 348 (915)
Q Consensus 269 GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g 348 (915)
|||+| +++|+++...++ +++++||+|++|+.+|++++.+.+.++||++|++++|+||.+|++++++|+|+|||||++|
T Consensus 81 GKTtL-l~~Ia~~~~~~~-~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~g 158 (326)
T cd01136 81 GKSTL-LGMIARGTTADV-NVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQG 158 (326)
T ss_pred ChHHH-HHHHhCCCCCCE-EEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999 899999988886 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCC
Q psy210 349 QDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEG 428 (915)
Q Consensus 349 ~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~ 428 (915)
+|||+++|||||||+|+||||+++||||+++||||++|+.|++|+||||+.+ +||||+|++|++|+|
T Consensus 159 ~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~~-------------~GSIT~i~tv~~~gd 225 (326)
T cd01136 159 KDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSD-------------KGSITAFYTVLVEGD 225 (326)
T ss_pred CCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCCC-------------CCCeeeeeeeeecCC
Confidence 9999999999999999999999999999999999999999999999999863 699999999999999
Q ss_pred CCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---C
Q psy210 429 DVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---D 505 (915)
Q Consensus 429 d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ 505 (915)
|++|||||++++|+||||+|||+||++||||||||+.|+||+++.++.++|.+++.++|+.|++|+|+++++++|. +
T Consensus 226 d~~dpi~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~~i~~g~y~~g 305 (326)
T cd01136 226 DLNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYKKG 305 (326)
T ss_pred CCCcchHHhhhhccceEEEEcCcHHHcCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995 9
Q ss_pred CCHHHHHHHHhHHHHHHHhhc
Q psy210 506 LDIVTKTQLYNGEKISLLMKQ 526 (915)
Q Consensus 506 ld~~~~~~L~~~~~i~~fL~Q 526 (915)
+|+++|++++++++|++||+|
T Consensus 306 ~d~~~d~~i~~~~~i~~~l~Q 326 (326)
T cd01136 306 SDPEVDEAIKLLPKIEAFLKQ 326 (326)
T ss_pred CCHHHHHHHHhHHHHHHHhCC
Confidence 999999999999999999998
No 84
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=2.1e-80 Score=706.57 Aligned_cols=332 Identities=33% Similarity=0.529 Sum_probs=318.8
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCC--CCccCCCCCCc
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKK--KSPIHTLPPKF 656 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~--~~pi~~~~p~~ 656 (915)
..+| ..++++.+.+++|++++||+.|++|..||+++++|+|+++||||+|++|+|+|+.+++.... +||++..|||+
T Consensus 41 ~~eV-i~~~~~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~ 119 (422)
T TIGR02546 41 LAEV-VGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPP 119 (422)
T ss_pred EEEE-EEEcCCcEEEEEccCccCCCCCCEEEECCCCceEEeChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCH
Confidence 3455 58999999999999999999999999999999999999999999999999999998776553 68999999999
Q ss_pred cccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhc
Q psy210 657 SNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736 (915)
Q Consensus 657 ~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~ 736 (915)
++|.+++++++||+++||.++|+++|||++|+|++|+|||+|+.+|+++. +++.++|++||||++|+++|++...+.
T Consensus 120 ~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~---~~~~~vi~~iG~~~~ev~~~~~~~~~~ 196 (422)
T TIGR02546 120 MSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGA---SADVNVIALIGERGREVREFIEHHLGE 196 (422)
T ss_pred HHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHHHHHHHhCCC---CCCEEEEEEEccCCcCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998764 368899999999999999999999888
Q ss_pred CccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHH
Q psy210 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816 (915)
Q Consensus 737 ~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~ 816 (915)
+.++++++|++++|+|+.+|++++++|+++|||||++|+|||+++||+||||+|+||||+++||||+++||||++|+.|+
T Consensus 197 ~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~ 276 (422)
T TIGR02546 197 EGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLP 276 (422)
T ss_pred ccccceEEEeccccCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHH
Q psy210 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKV 896 (915)
Q Consensus 817 ~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~ 896 (915)
+|+||||+.++||||+||||++++||++|||+|++++|+||||+|||+||++||||||||++|+||+| +.+++++|+++
T Consensus 277 ~l~ERag~~~~GSIT~~~tv~~~~dd~~~pi~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~-~~~~~~~~~~~ 355 (422)
T TIGR02546 277 RLLERAGNGEKGSITALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVM-SQVVSTEHRRA 355 (422)
T ss_pred HHHHHhcCCCCCceeEEEEEeccCCCCCCCchhhhhccccEEEEEcHHHHhCCCCCccCCccccccch-hhhCCHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999 57899999999
Q ss_pred HHHHHHHHHccHhhhhccC
Q psy210 897 ANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 897 ~~~~r~~l~~~~e~~~~~~ 915 (915)
++++|++|++|+|+++|++
T Consensus 356 a~~~~~~l~~y~e~~~li~ 374 (422)
T TIGR02546 356 AGKLRRLLATYKEVELLIR 374 (422)
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999863
No 85
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.2e-80 Score=699.73 Aligned_cols=327 Identities=32% Similarity=0.476 Sum_probs=309.4
Q ss_pred hhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCC-CCccCCCCCCccccc
Q psy210 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKK-KSPIHTLPPKFSNQI 660 (915)
Q Consensus 582 v~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~-~~pi~~~~p~~~~r~ 660 (915)
.+..|+++.+.+++|+++.||+.|++|.. ++++++++|+++||||+|++|+|+|+.+++...+ ++|++..+|++++|.
T Consensus 65 eVv~~~~~~~~l~~~~~~~gi~~g~~v~~-~~~~~v~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~ 143 (450)
T PRK06002 65 EVVRVDPDGVTVKPFEPRIEIGLGDAVFR-KGPLRIRPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRA 143 (450)
T ss_pred EEEEEeCCeEEEEEccCCcCCCCCCEEEe-CCCceeecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEee
Confidence 44699999999999999999999999999 6789999999999999999999999988776644 579999999999999
Q ss_pred cccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccc
Q psy210 661 FNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD 740 (915)
Q Consensus 661 ~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~ 740 (915)
.+++++.||+++||.++||++|||++|||++|+|||+|+.+|++.. +++..+|++||||++|+.+|.++.... .++
T Consensus 144 ~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~-~r~ 219 (450)
T PRK06002 144 RVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLAD-NLK 219 (450)
T ss_pred cceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHH-hhC
Confidence 9999999999999999999999999999999999999998887643 367889999999999999999866554 388
Q ss_pred cEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHH
Q psy210 741 KVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820 (915)
Q Consensus 741 ~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~E 820 (915)
|+++|++++|+||.+|++++++|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+|
T Consensus 220 rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~E 299 (450)
T PRK06002 220 KAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLE 299 (450)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHH
Q psy210 821 RISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVAN 898 (915)
Q Consensus 821 Rag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~ 898 (915)
|+|+. ++||||+||||++|+||++|||+|++++|+||||||||+||++||||||||+.|+||+|+ .+++++|+++++
T Consensus 300 Rag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~-~~~~~~~~~~a~ 378 (450)
T PRK06002 300 RAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLAR-HAWTPEQRKLVS 378 (450)
T ss_pred HhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCcccc-cccCHHHHHHHH
Confidence 99973 589999999999999999999999999999999999999999999999999999999995 678999999999
Q ss_pred HHHHHHHccHhhhhcc
Q psy210 899 EVKFYLQKYKELKDTS 914 (915)
Q Consensus 899 ~~r~~l~~~~e~~~~~ 914 (915)
++|++|++|+|+|+|.
T Consensus 379 ~~r~~la~y~e~e~li 394 (450)
T PRK06002 379 RLKSMIARFEETRDLR 394 (450)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999985
No 86
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=9.6e-80 Score=702.12 Aligned_cols=330 Identities=34% Similarity=0.530 Sum_probs=316.6
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCC-CCCCCCCCccCCCCCCccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKG-EINSKKKSPIHTLPPKFSN 658 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~-~~~~~~~~pi~~~~p~~~~ 658 (915)
.+| ..++++.+.+++|++++||++|++|+.+|+++++|+|+++||||+|++|+|+|+.+ ++....++|++..+|+|++
T Consensus 61 ~eV-i~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~ 139 (440)
T TIGR01026 61 AEV-VGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLK 139 (440)
T ss_pred EEE-EEecCCEEEEEEccCCcCCCCCCEEEeCCCccEEEcChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHH
Confidence 344 58889999999999999999999999999999999999999999999999999987 5555566799999999999
Q ss_pred cccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 659 QIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 659 r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
|.++++++.||+++||.++|+++|||++|||++|+|||+|+.+|+++. ++++.+|++||||++|+.+|++++...+.
T Consensus 140 R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~---~~~~~vi~~iG~r~~ev~~~~~~~~~~~~ 216 (440)
T TIGR01026 140 RAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNT---EADVNVIALIGERGREVREFIEHDLGEEG 216 (440)
T ss_pred ccCccccccceeeeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCC---CCCEEEEEEEeecchHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999888764 36888999999999999999998888788
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l 818 (915)
++||++|++|+|+||.+|+++|++|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|
T Consensus 217 l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l 296 (440)
T TIGR01026 217 LKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRL 296 (440)
T ss_pred cceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHH
Q psy210 819 QERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVAN 898 (915)
Q Consensus 819 ~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~ 898 (915)
+||++..++||||+||||++++||++|||+|++++|+||||+|||+||++||||||||+.|+||+| +.+++++|+++++
T Consensus 297 ~ERag~~~~GSIT~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~-~~~~~~~~~~~a~ 375 (440)
T TIGR01026 297 LERAGASGKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLM-TAIVSEEHRRAAR 375 (440)
T ss_pred HHHhccCCCCeeeEEEEEEccCcCCCcchhhhhccccceEEEEecchhhCCccCccCCCcccccCc-cccCCHHHHHHHH
Confidence 999998889999999999999999999999999999999999999999999999999999999999 5889999999999
Q ss_pred HHHHHHHccHhhhhcc
Q psy210 899 EVKFYLQKYKELKDTS 914 (915)
Q Consensus 899 ~~r~~l~~~~e~~~~~ 914 (915)
++|++|++|+|+++|+
T Consensus 376 ~~r~~l~~y~e~~~li 391 (440)
T TIGR01026 376 KFRELLSKYKDNEDLI 391 (440)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 9999999999999986
No 87
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.1e-79 Score=697.58 Aligned_cols=393 Identities=26% Similarity=0.372 Sum_probs=366.8
Q ss_pred hhhcccccccccC-CC-ceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCce
Q psy210 131 PRCLNQTLNIKFA-NN-TVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGE 208 (915)
Q Consensus 131 p~~L~~~le~~~~-~g-~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~ 208 (915)
+..+++.++++.. .+ ....|||.+++| + .+.+++++++.|++.|++|.+||+++++|+|+++||||+|++|+
T Consensus 36 ~~~ige~~~i~~~~~~~~~~~~EVi~~~~--~----~~~l~~~~~~~gl~~g~~V~~tg~~~~v~vg~~llGRv~d~~G~ 109 (438)
T PRK07721 36 ESSIGDVCYIHTKGGGDKAIKAEVVGFKD--E----HVLLMPYTEVAEIAPGCLVEATGKPLEVKVGSGLIGQVLDALGE 109 (438)
T ss_pred CCCchheEEEEecCCCCceEEEEEEEEcC--C----EEEEEEccCccCCCCCCEEEECCCccEEEechhhcCCEECcCCC
Confidence 4578999888633 22 136789999998 3 34788999999999999999999999999999999999999999
Q ss_pred eecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEE
Q psy210 209 FIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288 (915)
Q Consensus 209 PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~ 288 (915)
|||+.+......+++++.+||+|+.|.++++||.||+++||.++++++||+++|+|++|+|||+| +++|+++...+. .
T Consensus 110 plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStL-l~~I~~~~~~~~-g 187 (438)
T PRK07721 110 PLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTL-MGMIARNTSADL-N 187 (438)
T ss_pred ccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCCHHHH-HHHHhcccCCCe-E
Confidence 99998754444567999999999999999999999999999999999999999999999999999 789998877775 6
Q ss_pred EEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHH
Q psy210 289 IYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368 (915)
Q Consensus 289 V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~rei 368 (915)
++.++|||++|+.+|+++......+.+++++++++|+|+.+|+++||+|+|+||||||+|+|||+++|||||||+|+|||
T Consensus 188 vI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEi 267 (438)
T PRK07721 188 VIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREI 267 (438)
T ss_pred EEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHH
Confidence 78999999999999999855555689999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEe
Q psy210 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFL 448 (915)
Q Consensus 369 s~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~L 448 (915)
|+++||||+++||||++|+.+++++||+++.. +||||+|+||+++++|+++||+|++++|+||||+|
T Consensus 268 sl~~ge~P~~~G~dp~~~~~l~~ller~~~~~-------------~GsIT~~~TVlv~~hdm~e~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 268 GLAVGEPPTTKGYTPSVFAILPKLLERTGTNA-------------SGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVL 334 (438)
T ss_pred HHhcCCCCccccCCHHHHHHHHHHHHHhcCCC-------------CCCeeeEEEEEEECCCCCchhhhhEEEecCEEEEE
Confidence 99999999999999999999999999998631 69999999999999999999999999999999999
Q ss_pred ehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHHHhHHHHHHHhh
Q psy210 449 DTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQLYNGEKISLLMK 525 (915)
Q Consensus 449 sr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L~~~~~i~~fL~ 525 (915)
|++|+++||||||||+.|+||+++.++.++|+++|.++|+.|++|+|+++++++|. +.|++.|++++++++|++||+
T Consensus 335 s~~la~~g~~PAIdv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~g~~~~~d~a~~~~~~~~~fl~ 414 (438)
T PRK07721 335 DRQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLSTYQNSEDLINIGAYKRGSSREIDEAIQFYPQIISFLK 414 (438)
T ss_pred eccHHHCCCCCccCCcccccccccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCcCCCCHHHHHHHHhHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999984 899999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHH
Q psy210 526 QKPHENYSIVELIIILLII 544 (915)
Q Consensus 526 Q~~~e~~s~ee~l~~L~ai 544 (915)
|+.+|+.++++++..||.+
T Consensus 415 Q~~~~~~~~~~~~~~l~~~ 433 (438)
T PRK07721 415 QGTDEKATFEESIQALLSL 433 (438)
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999965
No 88
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=2.8e-79 Score=693.90 Aligned_cols=401 Identities=26% Similarity=0.358 Sum_probs=368.0
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
-.++-.. .+..+++.++++...+....++|.++++ + .+.+++++.+.+++.|++|.++|+++++|+++++|||
T Consensus 33 ~~~~~~~-~~~~~ge~~~i~~~~~~~~~~eVv~~~~--~----~~~l~~~~~~~gi~~g~~V~~~g~~~~v~vg~~llGr 105 (442)
T PRK06315 33 MLIKAVV-PDVRVGEVCLVKRHGMEPLVTEVVGFTQ--N----FVFLSPLGELTGVSPSSEVIPTGLPLHIRAGNGLLGR 105 (442)
T ss_pred CEEEEEE-CCcccCCEEEEecCCCCEEEEEEEEEcC--C----eEEEEEccCCcCCCCCCEEEeCCCccEEEecccccCC
Confidence 3344442 2468999998865333346789999998 3 3478899999999999999999999999999999999
Q ss_pred EeCCCceeecC--CCccc-ccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHH
Q psy210 202 IVNSKGEFIDN--KKKFL-IKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTI 278 (915)
Q Consensus 202 viD~lG~PiD~--~~~~~-~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i 278 (915)
|+|++|+|||+ ++++. ..++++++.+||+|++|.++++||+|||++||.++|+++|||++|||++|+|||+| +.+|
T Consensus 106 v~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~GKStL-l~~I 184 (442)
T PRK06315 106 VLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSL-LGMI 184 (442)
T ss_pred EEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCCCcchH-HHHh
Confidence 99999999998 66654 44668999999999999999999999999999999999999999999999999999 6888
Q ss_pred Hhhc-CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEecc
Q psy210 279 INQK-NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDD 357 (915)
Q Consensus 279 ~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Dd 357 (915)
+++. ..++ .|++++|||++|+.+|.++......++++++|++|++++|..++.++++|+++|||||++|++||+++|+
T Consensus 185 ~~~~~~~~~-~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds 263 (442)
T PRK06315 185 ARNAEEADV-NVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDS 263 (442)
T ss_pred hcccccCCc-eEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhH
Confidence 8754 4554 5789999999999999987433345899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccc
Q psy210 358 LTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTN 437 (915)
Q Consensus 358 ltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~ 437 (915)
+||||+|+|||++++|+||++++|||++|+.||+|+||||+.. +||||+||+|++++||++|||||+
T Consensus 264 ~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~~-------------~GSITai~tVl~~gdD~~dpi~d~ 330 (442)
T PRK06315 264 VTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGASD-------------KGTITAFYTVLVAGDDMNEPVADE 330 (442)
T ss_pred HHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCCC-------------CcceeeeEEEEecCCCCCcccHHH
Confidence 9999999999999999999999999999999999999999852 799999999999999999999999
Q ss_pred cccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCHHHHHHH
Q psy210 438 VISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDIVTKTQL 514 (915)
Q Consensus 438 ~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~~~~~~L 514 (915)
+++|+||||+|||+||++||||||||+.|+||+|+.++.++|++++.++|+.|++|+|+|+|+++|. ++|+++|+++
T Consensus 331 ~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~g~y~~g~d~~~d~ai 410 (442)
T PRK06315 331 VKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLAKYKANEMLIRIGEYRRGSDREVDFAI 410 (442)
T ss_pred hhhhcceEEEEeccHHHcCCCCCccchhhhcccchhcCCHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 9999999999
Q ss_pred HhHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 515 YNGEKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 515 ~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
+++++|++||+|+.+|+.++++++..|..+
T Consensus 411 ~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~ 440 (442)
T PRK06315 411 DHIDKLNRFLKQDIHEKTNYEEAAQQLRAI 440 (442)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 89
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=7.4e-80 Score=659.40 Aligned_cols=271 Identities=26% Similarity=0.372 Sum_probs=257.1
Q ss_pred cceeccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCC
Q psy210 189 IFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQT 268 (915)
Q Consensus 189 ~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~ 268 (915)
++++|+++++||||+|++|+|||+++++...++|+++.++||+++|..+++||+||||+||.|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 47899999999999999999999998877777899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhhc-CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhc
Q psy210 269 GKTTIAIDTIINQK-NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347 (915)
Q Consensus 269 GKt~l~l~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~ 347 (915)
|||+|+.+++.+++ +.+..|||++||||++|+.+|++++++.++++||++|++++|+||.+|+++||+|+|+||||||+
T Consensus 81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~ 160 (274)
T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDE 160 (274)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999655555543 33345999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEec
Q psy210 348 -GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426 (915)
Q Consensus 348 -g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~ 426 (915)
|+|||+++|||||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||++|+|++|
T Consensus 161 ~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~~-------------~~GSiT~~~~v~~~ 227 (274)
T cd01133 161 EGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST-------------KKGSITSVQAVYVP 227 (274)
T ss_pred cCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcCC-------------CCcccceEEEEEec
Confidence 9999999999999999999999999999999999999999999999999973 17999999999999
Q ss_pred CCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccccc
Q psy210 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGG 472 (915)
Q Consensus 427 ~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~ 472 (915)
+||++|||||++++|+||||+|||+||++||||||||+.|+||+|.
T Consensus 228 ~dD~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~ 273 (274)
T cd01133 228 ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred CCCCCCchHHHHHHhcceEEEEcHHHHhCCCCCCcCCccchhcccC
Confidence 9999999999999999999999999999999999999999999985
No 90
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=2.7e-78 Score=664.50 Aligned_cols=298 Identities=34% Similarity=0.586 Sum_probs=287.8
Q ss_pred cccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccccccccccccceeeecccccccCCeeeeccCCCC
Q psy210 614 PILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGV 693 (915)
Q Consensus 614 ~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~ 693 (915)
++++|||+++||||+|++|+|||+.+++...+++|++..+|++++|.++++++.||+++||.++|+++|||++|||++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 46899999999999999999999998876677899999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC
Q psy210 694 GKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS 773 (915)
Q Consensus 694 GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~ 773 (915)
|||+|+.+|+++.. ++++++++||||++|+++|+++..+.+.++||+||++|+|+||.+|++++++|+++||||||+
T Consensus 81 GKTtLl~~Ia~~~~---~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~ 157 (326)
T cd01136 81 GKSTLLGMIARGTT---ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQ 157 (326)
T ss_pred ChHHHHHHHhCCCC---CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998887643 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCccccccc
Q psy210 774 GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFT 853 (915)
Q Consensus 774 g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~ 853 (915)
|||||+++||+||||+|+|||++++||+|+++||||++|++|++|+||+|+.++||||+|+||++|+||++|||++++++
T Consensus 158 g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~~~GSIT~i~tv~~~gdd~~dpi~~~~~~ 237 (326)
T cd01136 158 GKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLNEPIADAVRS 237 (326)
T ss_pred CCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCCCCCCeeeeeeeeecCCCCCcchHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 854 HLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 854 i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
++||||+|||+||++||||||||+.|+||+| +.+++++|+++++++|++|++|+|+|++++
T Consensus 238 ~~dg~ivL~r~la~~g~~PAid~~~S~SR~~-~~~~~~~~~~~a~~~r~~l~~y~e~~~~i~ 298 (326)
T cd01136 238 ILDGHIVLSRALAAAGHYPAIDVLKSISRLM-NAVVTPEHKEAARKLRELLSAYQEVEDLIR 298 (326)
T ss_pred ccceEEEEcCcHHHcCCCCCcccccccccCc-cccCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999 578999999999999999999999999863
No 91
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.8e-78 Score=680.91 Aligned_cols=328 Identities=31% Similarity=0.430 Sum_probs=312.4
Q ss_pred hhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccccc
Q psy210 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIF 661 (915)
Q Consensus 582 v~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~ 661 (915)
.+..++++.+.+++|++++||+.|++|..+++++++|||+++||||+|++|+|+|+++++...+++|++.++|++++|..
T Consensus 56 eV~~~~~~~~~~~~~~~~~gi~~g~~v~~~~~~~~v~vg~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~ 135 (432)
T PRK06793 56 EVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREE 135 (432)
T ss_pred EEEEecCCcEEEEEccCccCCCCCCEEEECCCccEEEcCHhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheec
Confidence 34689999999999999999999999999999999999999999999999999999877655567899999999999999
Q ss_pred ccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCcccc
Q psy210 662 NNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDK 741 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~ 741 (915)
+++++.||+++||.++|+++|||++|||++|+|||+|+.+|+++.. ++..++++||||++|++||++...++..++|
T Consensus 136 i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~ 212 (432)
T PRK06793 136 ITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRK 212 (432)
T ss_pred hhhccCCCCEEEeccceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccce
Confidence 9999999999999999999999999999999999999999998763 5778899999999999999985444434999
Q ss_pred EEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHH
Q psy210 742 VSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQER 821 (915)
Q Consensus 742 ~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ER 821 (915)
+++|++|+|+|+.+|++++++|+++||||||+|+|||+++||+||||+|+|||++++||+|+. |||+++|+.|++|+||
T Consensus 213 tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 213 SVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLER 291 (432)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred hcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHH
Q psy210 822 ISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVK 901 (915)
Q Consensus 822 ag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r 901 (915)
+|+.++||||++|||++|+||++|||+|++++||||||||||+||++||||||||+.|+||+|+ .+++++|+++++++|
T Consensus 292 ag~~~~GSiT~~~tvlv~~dD~~dpI~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~-~~~~~~~~~~a~~~r 370 (432)
T PRK06793 292 SGKTQKGSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIME-EIVSPNHWQLANEMR 370 (432)
T ss_pred hccCCCcceEEEEEEEecCCCCCCcchHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCcc-ccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred HHHHccHhhhhcc
Q psy210 902 FYLQKYKELKDTS 914 (915)
Q Consensus 902 ~~l~~~~e~~~~~ 914 (915)
++|++|+|+|++.
T Consensus 371 ~~la~y~e~e~~i 383 (432)
T PRK06793 371 KILSIYKENELYF 383 (432)
T ss_pred HHHHhChHHHHHH
Confidence 9999999999985
No 92
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.9e-78 Score=660.25 Aligned_cols=340 Identities=27% Similarity=0.408 Sum_probs=327.0
Q ss_pred cccchhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCC
Q psy210 574 KNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLP 653 (915)
Q Consensus 574 ~lv~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~ 653 (915)
++.+.+..++++++++.|.++.+++...|+.||.|+.||+.++||||++++|||+|++|+|+|+++++......|++..+
T Consensus 54 ef~~~v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~A 133 (504)
T COG0056 54 EFPGGVKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKA 133 (504)
T ss_pred EecCCcEEEEEeccccceeEEEecCCccccCCcEEEeeCceEEEecchhhcceeecCCCCccCCCCCccccccCcccccc
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHh
Q psy210 654 PKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEM 733 (915)
Q Consensus 654 p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~ 733 (915)
|..++|++++||++|||++||+|.|||||||.+|+|+++||||+++.+.+.|++. ..-.||||+||++...++.+++.|
T Consensus 134 pgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIAidtIiNQk~-~~v~CIYVAIGQK~stva~vv~tL 212 (504)
T COG0056 134 PGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG-SGVKCIYVAIGQKRSTVANVVRTL 212 (504)
T ss_pred CceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhhHHHHHhccc-CCcEEEEEEcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999974 345799999999999999999999
Q ss_pred hhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhH
Q psy210 734 KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAE 813 (915)
Q Consensus 734 ~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~ 813 (915)
+++|+|++|+||++++++|+..+|++||++|++||||+++|+|||+++||+|++|.||||||+++++||+|+.||+++|+
T Consensus 213 ~e~gAmdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFY 292 (504)
T COG0056 213 EEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFY 292 (504)
T ss_pred HHcCCccceEEEEecCCcchhhhhhhhhhhhHHHHHHHhcCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCC
Q psy210 814 EMGKLQERISST----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIV 889 (915)
Q Consensus 814 ~l~~l~ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~ 889 (915)
.|++|+|||++. ++||||++|++.+.++|++.+||+|+.|||||||+|+.+|+++|+.||||+..|+||+.+ ..+
T Consensus 293 lHSrLLERAakl~~e~g~GSiTALPIIETqagDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGs-sAQ 371 (504)
T COG0056 293 LHSRLLERAAKLSDELGGGSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGS-AAQ 371 (504)
T ss_pred hhHHHHHHHHhhccccCCCceEeeeeEEeccCceeeecccceEEecCCcEEeehhhhhcCCCccccCCceeeccch-HHH
Confidence 999999999963 679999999999999999999999999999999999999999999999999999999985 456
Q ss_pred CHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 890 GEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 890 ~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
.+..++++..+|..|++|+|++.+||
T Consensus 372 ~kamkkvag~lrl~laqYrel~afsq 397 (504)
T COG0056 372 IKAMKKVAGSLRLILAQYRELEAFSQ 397 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999986
No 93
>KOG1351|consensus
Probab=100.00 E-value=7.5e-77 Score=615.11 Aligned_cols=423 Identities=24% Similarity=0.329 Sum_probs=391.8
Q ss_pred eecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhcccccccc-CCCcccccCccceeccccccceeEeCC
Q psy210 127 DYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLT-QGQKCFCTEKIFEIPVGFELLGRIVNS 205 (915)
Q Consensus 127 ~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~-~G~~V~~tg~~~~vpvg~~lLGrviD~ 205 (915)
|-+.-..+++.+++...+|..+.|||..+.| +-+ ++++|+++.|+. ..+.|.+||+.+..|++++||||++|+
T Consensus 38 d~vkfp~y~eiv~ltlpdgt~r~gqvlev~g--~ka----vvqvfegtsgid~k~t~~eftg~~lr~pvsedmlgrifng 111 (489)
T KOG1351|consen 38 DKVKFPKYAEIVNLTLPDGSVRSGQVLEVSG--EKA----VVQVFEGTSGIDAKKTTVEFTGEILRTPVSEDMLGRIFNG 111 (489)
T ss_pred ecccccchhhheEEecCCCCeecceEEEecC--Cee----EEEEeccccccccccceEEEecccccccccHHHhhhhhcC
Confidence 3344346889999999999999999999999 444 678999999998 778999999999999999999999999
Q ss_pred CceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc---
Q psy210 206 KGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK--- 282 (915)
Q Consensus 206 lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~--- 282 (915)
.|+|||.++++.++.+.++++.|+||..|.++.|.++|||.+||.|+.|.||||++||+.+|..+..+| ..|++|.
T Consensus 112 sgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsaaglphneia-aqicrqaglv 190 (489)
T KOG1351|consen 112 SGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIA-AQICRQAGLV 190 (489)
T ss_pred CCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceeecCCCChhHHH-HHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 4566653
Q ss_pred -----------CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHH-hcCCc
Q psy210 283 -----------NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQD 350 (915)
Q Consensus 283 -----------~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r-~~g~~ 350 (915)
..|+.+||+++|-.-+..++|.++|++.|.|++++++.+.++||..+|..+|..|+|.||||+ .+++|
T Consensus 191 k~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~~v~lflnlandptieriitprlalt~aeflayq~ekh 270 (489)
T KOG1351|consen 191 KRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKH 270 (489)
T ss_pred ccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcCCccceEEEEecCCCCchhhhcchhhhHhHHHHHHHhhcCe
Confidence 247889999999999999999999999999999999999999999999999999999999999 58999
Q ss_pred EEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCC
Q psy210 351 CLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDV 430 (915)
Q Consensus 351 Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~ 430 (915)
||+|+.||+.||+|+||+|.+..|.|||+||||+||.++|.+|||||++++ + +||||++|+++||.||+
T Consensus 271 vlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrveg---r--------~gsitqipiltmpnddi 339 (489)
T KOG1351|consen 271 VLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEG---R--------NGSITQIPILTMPNDDI 339 (489)
T ss_pred EEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhccccc---C--------CCceeeeeeEecCCccc
Confidence 999999999999999999999999999999999999999999999999975 4 89999999999999999
Q ss_pred CCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccccccc-----ccHHHHHHHHHHHHHHHhhHHHHhhhhc-c-
Q psy210 431 TSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA-----QYKIVKKLSGDIRIMLAQYRELESFSKF-S- 503 (915)
Q Consensus 431 ~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~-----~~~~~~~~a~~lr~~la~~~e~e~l~~l-G- 503 (915)
||||||.+++||+|||+.||+|+++.+||+||++.|+||+|.++ ..++|.++++|+++.|+-.++++.+-.. |
T Consensus 340 thpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvsnqlya~yaigkdvqamkavvge 419 (489)
T KOG1351|consen 340 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGE 419 (489)
T ss_pred CCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCcccccchhhHHHHHHHHHhcchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999554 3599999999999999999999999765 6
Q ss_pred CCCCHHHHHHHHhHHHHH-HHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhh
Q psy210 504 SDLDIVTKTQLYNGEKIS-LLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRII 571 (915)
Q Consensus 504 ~~ld~~~~~~L~~~~~i~-~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~ 571 (915)
+.|+.++..+|++-.+|+ .|+.|+.+|.+++.+++++.| .+|...|.+-++++...+++.++.+
T Consensus 420 eals~ed~l~lefl~kfek~fi~qg~yenrtvfesldi~w----~llrifpreml~rip~~~ld~~y~r 484 (489)
T KOG1351|consen 420 EALSSEDLLYLEFLDKFEKNFISQGAYENRTVFESLDIAW----QLLRIFPREMLKRIPAKTLDEFYSR 484 (489)
T ss_pred cccChhhhHHHHHHHHHHHHHHhcCCccchhHHHHHHHHH----HHHHHhHHHHHhhccHHHHHHhccc
Confidence 579999999999999996 699999999999999999999 5677778888888887776654443
No 94
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.6e-76 Score=670.27 Aligned_cols=332 Identities=30% Similarity=0.484 Sum_probs=313.8
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
...|| ..|.++.+.+++|+++.||+.|++|..+|+++++|+|+++||||+|++|+|+|+.+......++|++..+|+|+
T Consensus 55 ~~~EV-i~~~~~~~~l~~~~~~~gl~~g~~V~~tg~~~~v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~ 133 (438)
T PRK07721 55 IKAEV-VGFKDEHVLLMPYTEVAEIAPGCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPL 133 (438)
T ss_pred EEEEE-EEEcCCEEEEEEccCccCCCCCCEEEECCCccEEEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChh
Confidence 34566 58899999999999999999999999999999999999999999999999999887544446689999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+|.+++++++||+++||.++|+++||+++|+|++|+|||+|+.+|++... ++..++.++|||++|+.+|+++.....
T Consensus 134 ~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Gerg~ev~e~~~~~l~~~ 210 (438)
T PRK07721 134 KRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGERGREVREFIERDLGPE 210 (438)
T ss_pred hccCcccccccchhhhheeeeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEecCCccHHHHHHhhcChh
Confidence 99999999999999999999999999999999999999999998887543 577899999999999999999755555
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHH
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~ 817 (915)
.++|+++|++|+|+||.+|++++|+|+++||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++
T Consensus 211 ~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ 290 (438)
T PRK07721 211 GLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPK 290 (438)
T ss_pred hhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHH
Q psy210 818 LQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVA 897 (915)
Q Consensus 818 l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~ 897 (915)
++||+++.+.||||+|+||+++++|++||++|++++++||||+||++|+++||||||||+.|+||+|+ .+++++|++++
T Consensus 291 ller~~~~~~GsIT~~~TVlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~-~~~~~~~~~~a 369 (438)
T PRK07721 291 LLERTGTNASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMN-HIVSPEHKEAA 369 (438)
T ss_pred HHHHhcCCCCCCeeeEEEEEEECCCCCchhhhhEEEecCEEEEEeccHHHCCCCCccCCccccccccc-ccCCHHHHHHH
Confidence 99999976789999999999999999999999999999999999999999999999999999999995 79999999999
Q ss_pred HHHHHHHHccHhhhhcc
Q psy210 898 NEVKFYLQKYKELKDTS 914 (915)
Q Consensus 898 ~~~r~~l~~~~e~~~~~ 914 (915)
+++|++|++|+|+|++.
T Consensus 370 ~~~r~~l~~y~e~~~li 386 (438)
T PRK07721 370 NRFRELLSTYQNSEDLI 386 (438)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 99999999999999985
No 95
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=6.3e-76 Score=666.61 Aligned_cols=333 Identities=34% Similarity=0.520 Sum_probs=314.3
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCC--CCCCC-CCCCCccCCCCC
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDN--KGEIN-SKKKSPIHTLPP 654 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~--~~~~~-~~~~~pi~~~~p 654 (915)
...|| ..|+++.+.+++|+++.||+.|+.|+.+|+++++|+|++|||||+|++|+|+|+ ++++. ..+++|++..||
T Consensus 58 ~~~eV-v~~~~~~~~l~~~~~~~gi~~g~~V~~~g~~~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~ 136 (442)
T PRK06315 58 LVTEV-VGFTQNFVFLSPLGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPP 136 (442)
T ss_pred EEEEE-EEEcCCeEEEEEccCCcCCCCCCEEEeCCCccEEEecccccCCEEeccCcccccccCCCcccccceeeeecCCC
Confidence 34455 589999999999999999999999999999999999999999999999999998 66654 335689999999
Q ss_pred CccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhh
Q psy210 655 KFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMK 734 (915)
Q Consensus 655 ~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~ 734 (915)
+|++|.+++++++|||++||.++|+++|||++|||++|+|||+|+.+|++++.. .++.|+++||||++|+.+|.++..
T Consensus 137 ~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liGerg~ev~~~~~~~l 214 (442)
T PRK06315 137 DPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIGERGREVREFIEGDL 214 (442)
T ss_pred ChHHcccccccccceEEEEeccccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEECCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987632 366789999999999999998744
Q ss_pred hcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHH
Q psy210 735 ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814 (915)
Q Consensus 735 ~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~ 814 (915)
.+..++++++|++||++||.+|+.++++++++|||||++|+|||+++||+||||+|+|||++++||||++++|||++||.
T Consensus 215 ~~~g~~~svvvvats~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~ 294 (442)
T PRK06315 215 GEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST 294 (442)
T ss_pred HhcCCceEEEEEeCCCCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH
Confidence 43458899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHH
Q psy210 815 MGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHY 894 (915)
Q Consensus 815 l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~ 894 (915)
|++|+||||+.++||||+||||++++||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+ .+++++|+
T Consensus 295 l~~llERag~~~~GSITai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~-~~~~~~~~ 373 (442)
T PRK06315 295 LPKLLERSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLT-AIVPEEQR 373 (442)
T ss_pred hHHHHHHhcCCCCcceeeeEEEEecCCCCCcccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccch-hcCCHHHH
Confidence 99999999998999999999999999999999999999999999999999999999999999999999994 78999999
Q ss_pred HHHHHHHHHHHccHhhhhcc
Q psy210 895 KVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 895 ~~~~~~r~~l~~~~e~~~~~ 914 (915)
++++++|++|++|+|+|+++
T Consensus 374 ~~a~~~r~~l~~y~e~e~li 393 (442)
T PRK06315 374 RIIGKAREVLAKYKANEMLI 393 (442)
T ss_pred HHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999999986
No 96
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=3.2e-74 Score=626.67 Aligned_cols=237 Identities=30% Similarity=0.457 Sum_probs=226.9
Q ss_pred CCCCCccCCCCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCC
Q psy210 643 SKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGER 722 (915)
Q Consensus 643 ~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer 722 (915)
..+.||++.++|++ +|..+++||.||||+||+|+||+||||++|||++|+|||+|+++|+++. +.|++||++||||
T Consensus 119 ~~~~~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~---~~dvvVyv~iGER 194 (369)
T cd01134 119 MVQKWPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS---NSDIVIYVGCGER 194 (369)
T ss_pred cceeeecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhCC---CCCEEEEEEeCCC
Confidence 34679999988877 9999999999999999999999999999999999999999999999874 3689999999999
Q ss_pred CchHHHHHHHhh-------hcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhh
Q psy210 723 SREGNDFYHEMK-------ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVS 795 (915)
Q Consensus 723 ~~ev~e~~~~~~-------~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis 795 (915)
++|++||+++|+ ++++|+|||+|+||||+||.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||
T Consensus 195 g~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs 274 (369)
T cd01134 195 GNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREIS 274 (369)
T ss_pred hHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHHH
Confidence 999999999986 3678999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCcchhhHHHHHHHHHhcCC-------CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhc
Q psy210 796 AMLGRTPSAVGYQPTLAEEMGKLQERISST-------KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAEL 868 (915)
Q Consensus 796 ~~~ge~p~~~gyp~~l~~~l~~l~ERag~~-------~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~ 868 (915)
+++||+|+++|||+|+|++|++||||||+. ++||||++++|++++||++|||++++++|+||||+|||+||++
T Consensus 275 ~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~V~~~g~D~sdPV~~~t~~i~dg~i~Lsr~La~~ 354 (369)
T cd01134 275 GRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQR 354 (369)
T ss_pred HhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEEEEccCCCcCcchHHhhHhhcceEEEECHHHHhC
Confidence 999999999999999999999999999963 4699999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcccc
Q psy210 869 GIYPAIDPLESYSKQ 883 (915)
Q Consensus 869 g~~PAIdv~~S~SR~ 883 (915)
||||||||+.|+||+
T Consensus 355 g~yPAId~l~S~Sry 369 (369)
T cd01134 355 RHFPSINWLISYSKY 369 (369)
T ss_pred CCCCCcCCcccccCC
Confidence 999999999999995
No 97
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3e-71 Score=592.84 Aligned_cols=379 Identities=23% Similarity=0.314 Sum_probs=352.6
Q ss_pred ccchhhccccccccCCCcccccCccceeccccccceeEeCCCceeecCCCccccc--ccccccccCCCCCcccccCcccc
Q psy210 165 GFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIK--NRETVEKIAPGIMDRESVNEPLL 242 (915)
Q Consensus 165 Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~ 242 (915)
-|.+..++.+.|+..|+.|..||+|+++|+|+..+||++|.+|+|||+.+|+... .+|+++.++|...+...-+|.|+
T Consensus 53 ~VR~Iam~~t~gl~rg~~v~dtg~pi~VPVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIle 132 (468)
T COG0055 53 VVRTIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILE 132 (468)
T ss_pred eEEEEEecCccCcccCcEEecCCCceEEecchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhh
Confidence 3566677999999999999999999999999999999999999999999988865 88999999999999999999999
Q ss_pred ccceeeeccccccccceeeeecCCCCChhHHHHHHHHhh-cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEe
Q psy210 243 TGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ-KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAA 321 (915)
Q Consensus 243 TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~-~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~ 321 (915)
||||+||.|.|+.||.|+|+||++|+|||+|+++.|.|- +.++...||+++|||.||..+++.++++++++++|++|..
T Consensus 133 TGIKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~g 212 (468)
T COG0055 133 TGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFG 212 (468)
T ss_pred hCceEEEEecccccCceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEe
Confidence 999999999999999999999999999999977777764 4566678999999999999999999999999999999999
Q ss_pred cCCCCHHHhhhhhhhhhhhHHHHHh-cCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhccc
Q psy210 322 TAADSAAEQYISPYTGCTIGEYFRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400 (915)
Q Consensus 322 ~a~~~~~~r~~~~~~a~tiAEy~r~-~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~ 400 (915)
.+++||..|.+.+.+|+|+|||||| +|+|||+++|++.||.+|-+|+|.++|++|+..||+|++-+....|.||-.
T Consensus 213 QMNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIt--- 289 (468)
T COG0055 213 QMNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERIT--- 289 (468)
T ss_pred ecCCCCcceeeehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHh---
Confidence 9999999999999999999999997 599999999999999999999999999999999999999999999999943
Q ss_pred ccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccccc-ccccHHH
Q psy210 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGG-AAQYKIV 479 (915)
Q Consensus 401 ~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~-~~~~~~~ 479 (915)
++++||||.+++|++|.||+|||.|..+.+++|+.++|||++|+.|+||||||+.|.||... ...-++|
T Consensus 290 ----------stk~GSITSiQavyvPaDDlTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivGe~H 359 (468)
T COG0055 290 ----------STKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEH 359 (468)
T ss_pred ----------cCCCCceEEEEEEEeccccCCCcchhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCcccccHHH
Confidence 45589999999999999999999999999999999999999999999999999999999984 4566999
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhc-c-CCCCHHHHHHHHhHHHHHHHhhcCCCC----------CccHHHHHHHHHHHhcc
Q psy210 480 KKLSGDIRIMLAQYRELESFSKF-S-SDLDIVTKTQLYNGEKISLLMKQKPHE----------NYSIVELIIILLIIKNR 547 (915)
Q Consensus 480 ~~~a~~lr~~la~~~e~e~l~~l-G-~~ld~~~~~~L~~~~~i~~fL~Q~~~e----------~~s~ee~l~~L~ai~~G 547 (915)
.++|.+.++.|++|+|++|++.+ | ++|+++++..++++++|+.||.|+.+- ..++++++.....+..|
T Consensus 360 y~va~~vq~iLqrYkeLqDIIaILGmdELseedk~~V~rArki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G 439 (468)
T COG0055 360 YEVAREVQSILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEG 439 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhcChhHHHHHHHHHHHHHHhcCcchhhheecCCCceeeeHHHHHHHHHHHhCC
Confidence 99999999999999999999985 6 799999999999999999999998753 34788888888888888
Q ss_pred cccccchhh
Q psy210 548 FFFKIPIKQ 556 (915)
Q Consensus 548 ~Ld~vp~~e 556 (915)
-++.+|...
T Consensus 440 ~yd~~pE~a 448 (468)
T COG0055 440 KYDHLPEQA 448 (468)
T ss_pred CcccCCHHH
Confidence 888887543
No 98
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=2.1e-71 Score=604.60 Aligned_cols=246 Identities=28% Similarity=0.388 Sum_probs=232.3
Q ss_pred ccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeecc
Q psy210 216 FLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQ 295 (915)
Q Consensus 216 ~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGe 295 (915)
+...++||++.++|++ +|..+++||+||||+||+|+||++|||++|||++|+|||+| +++|++|++.|+ |||++|||
T Consensus 117 ~~~~~~~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L-~~~Iak~~~~dv-vVyv~iGE 193 (369)
T cd01134 117 ITMVQKWPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVI-QQSLSKYSNSDI-VIYVGCGE 193 (369)
T ss_pred cccceeeecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHH-HHHHHhCCCCCE-EEEEEeCC
Confidence 3444678999999987 99999999999999999999999999999999999999999 688999999997 89999999
Q ss_pred chhhHHHHHHHHh-------ccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHH
Q psy210 296 KISSLINVINKLK-------YYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368 (915)
Q Consensus 296 r~~ev~~~~~~l~-------~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~rei 368 (915)
|++|+.+|+++|+ +.++|+||++|+||+|+|+.+|++++|+|+|+||||||+|+|||+++||+||||+|+|||
T Consensus 194 Rg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REI 273 (369)
T cd01134 194 RGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREI 273 (369)
T ss_pred ChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHH
Confidence 9999999999986 467799999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEe
Q psy210 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFL 448 (915)
Q Consensus 369 s~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~L 448 (915)
|++++|||+++|||+|+|+.+|++|||||+++. +|. .+++||||++++|++|+||++|||++++++|+||||+|
T Consensus 274 s~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~-~~~-----~~~~GSIT~i~~V~~~g~D~sdPV~~~t~~i~dg~i~L 347 (369)
T cd01134 274 SGRLEEMPGEEGYPAYLGARLASFYERAGRVKC-LGS-----PGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFWGL 347 (369)
T ss_pred HHhcCCCCCccCcCccHHHHHHHHHHhcccccc-cCC-----CCCCccEEEEEEEEccCCCcCcchHHhhHhhcceEEEE
Confidence 999999999999999999999999999999864 221 23479999999999999999999999999999999999
Q ss_pred ehhhhhcCCCCeeeecCCcccc
Q psy210 449 DTNLFNSNYRPAINVGLSVSRV 470 (915)
Q Consensus 449 sr~la~~g~~PaId~~~S~SR~ 470 (915)
||+||++||||||||+.|+||+
T Consensus 348 sr~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 348 DKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred CHHHHhCCCCCCcCCcccccCC
Confidence 9999999999999999999996
No 99
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.1e-70 Score=673.43 Aligned_cols=260 Identities=22% Similarity=0.301 Sum_probs=238.4
Q ss_pred HHhhcCCCeEEEEEeeccchhhHHHHHHHHhc-------cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCc
Q psy210 278 IINQKNKNVICIYVCIGQKISSLINVINKLKY-------YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQD 350 (915)
Q Consensus 278 i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~ 350 (915)
|++++++|+ |||++||||++|+++|++++.+ .++|+|||+|+||||+|+++|++++|+|+|+||||||+|+|
T Consensus 676 la~~~~adi-~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd~G~~ 754 (1017)
T PRK14698 676 LAKWSDAQV-VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYD 754 (1017)
T ss_pred HhhccCCCE-EEEEeeccchHHHHHHHHHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 334456675 8999999999999999999955 67899999999999999999999999999999999999999
Q ss_pred EEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCC
Q psy210 351 CLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDV 430 (915)
Q Consensus 351 Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~ 430 (915)
||+++||+||||+|+||||+++||||+++|||||+|+.+|++|||||++.. +|+ ++++||||++++|++|+||+
T Consensus 755 Vll~~Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~-l~~-----~~~~GSIT~i~~V~~~g~D~ 828 (1017)
T PRK14698 755 VALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVT-LGS-----DYRVGSVSVIGAVSPPGGDF 828 (1017)
T ss_pred EEEEeccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcc-cCC-----CCCCcceEEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999999999999753 222 23479999999999999999
Q ss_pred CCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccccccc-------ccHHHHHHHHHHHHHHHhhHHHHhhhhc-
Q psy210 431 TSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA-------QYKIVKKLSGDIRIMLAQYRELESFSKF- 502 (915)
Q Consensus 431 ~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~-------~~~~~~~~a~~lr~~la~~~e~e~l~~l- 502 (915)
+||||+++++|+||||+|||+||++||||||||+.|+||++... ..++|.+++.+++.+|++|+|+++++++
T Consensus 829 s~Pv~~~~~~i~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~l~ 908 (1017)
T PRK14698 829 SEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIV 908 (1017)
T ss_pred CCcHHHHHHHHhCcEEecCHHHHhCCCCCCcCcccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999876 6799999999999999999999999999
Q ss_pred cC-CCCHHHHHHHHhHHHHH-HHhhcCCCCC----ccHHHHHHHHHHH
Q psy210 503 SS-DLDIVTKTQLYNGEKIS-LLMKQKPHEN----YSIVELIIILLII 544 (915)
Q Consensus 503 G~-~ld~~~~~~L~~~~~i~-~fL~Q~~~e~----~s~ee~l~~L~ai 544 (915)
|. .+++.++..+.+++.|+ .||+|+.+++ .++++++..|+.+
T Consensus 909 g~~~l~~~d~~~~~~~~~i~e~fL~Q~~~~~~d~~~~~~~~~~~l~~i 956 (1017)
T PRK14698 909 GPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVL 956 (1017)
T ss_pred CCCCCCHHHHHHHHHhHHHHhccCCCCCCCccccCCCHHHHHHHHHHH
Confidence 44 68888888888888885 6999999666 7999999998875
No 100
>KOG1350|consensus
Probab=100.00 E-value=1e-71 Score=582.11 Aligned_cols=337 Identities=67% Similarity=1.050 Sum_probs=330.2
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS 657 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~ 657 (915)
.++||.++++++.|+++.++.|+||.+|..|..+|.|+++|||++.||||+|+.|+|+|+++++....+.|+|..+|.+.
T Consensus 87 lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~ 166 (521)
T KOG1350|consen 87 LVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFV 166 (521)
T ss_pred eeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceeeecCHHHHhhHHHhcCCcccccCCcccccccccccCChhHh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcC
Q psy210 658 NQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737 (915)
Q Consensus 658 ~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~ 737 (915)
+-....|.|.||||++|+|.|..||.|+|+||++|+|||+|.+++++|+++.|.+..||+++|||.||..++++++.|.|
T Consensus 167 e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlImELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~g 246 (521)
T KOG1350|consen 167 EMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESG 246 (521)
T ss_pred hhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeHHHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcC
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred cc------ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC-CCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcch
Q psy210 738 VL------DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPT 810 (915)
Q Consensus 738 ~~------~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~ 810 (915)
++ .|..+|+.++|+||..|.|++.+++|+||||||+ |.|||+++|+++||.+|..|+|.++|++|+..||+|.
T Consensus 247 VI~l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPT 326 (521)
T KOG1350|consen 247 VINLEGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPT 326 (521)
T ss_pred eeeccCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcc
Confidence 64 5789999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCC
Q psy210 811 LAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVG 890 (915)
Q Consensus 811 l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~ 890 (915)
+..++..+.||...+++||||++++|++|+||.+||.|..+|+++|.+-||||.+++.|+|||+|++.|.||+|+|.++|
T Consensus 327 LaTdMG~mQERITtTkkGSiTSvQAvYVPADDLtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG 406 (521)
T KOG1350|consen 327 LATDMGTMQERITTTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVG 406 (521)
T ss_pred cccchhhhhHhhhccccCceeEEEEEEeehhccCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccHhhhhcc
Q psy210 891 EEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 891 ~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
++|+.+|+.++++|+.|++|+||.
T Consensus 407 ~eHY~vA~~Vqk~LQ~YKsLQDII 430 (521)
T KOG1350|consen 407 EEHYNVARGVQKTLQDYKSLQDII 430 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999974
No 101
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.1e-69 Score=599.60 Aligned_cols=325 Identities=19% Similarity=0.256 Sum_probs=301.3
Q ss_pred HHHHhhhcccccchhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCC
Q psy210 565 IKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSK 644 (915)
Q Consensus 565 i~~Lr~~~~~lv~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~ 644 (915)
.+|||..+.++.....+++ +..++++- .||+.||.|..++++ ++++.+||||+|++|+|+|+.. .
T Consensus 30 ~gflr~~~~~~~~~~~d~y--v~~~~i~~------~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~ 94 (380)
T PRK12608 30 FGFLRSARRNYLPSPDDVF--VPPALIRR------FNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----R 94 (380)
T ss_pred ceEeecCccCCCCCCCCee--eCHHHHHH------hCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----c
Confidence 4678888788888888887 77777774 489999999999988 9999999999999999999763 2
Q ss_pred CCCccCCCCCCccccccccccc-cccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcE-EEEEEecCC
Q psy210 645 KKSPIHTLPPKFSNQIFNNNIL-ETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC-SVFIGVGER 722 (915)
Q Consensus 645 ~~~pi~~~~p~~~~r~~~~e~l-~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~-~v~~~iGer 722 (915)
..++....|++|.+|.++.++. .+|+|+||+|+|||||||++|+|++|+|||+|++++++++.++++++ +++++||||
T Consensus 95 ~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER 174 (380)
T PRK12608 95 RPHFDDLTPLHPRERLRLETGSDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER 174 (380)
T ss_pred ccCcCcCCCCCccccccccccCcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 3345666777899999998888 99999999999999999999999999999999999999998888887 588899999
Q ss_pred CchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCC
Q psy210 723 SREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTP 802 (915)
Q Consensus 723 ~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p 802 (915)
++|++||++.+.. +++++++|+|+..|.+++++++++||||+++|+||+|++||+||||+||||+++++||+|
T Consensus 175 ~~EV~df~~~i~~-------~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~ 247 (380)
T PRK12608 175 PEEVTDMRRSVKG-------EVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTL 247 (380)
T ss_pred CCCHHHHHHHHhh-------hEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCC
Confidence 9999999999853 688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCC-CCceeEEEEEEec-CCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCc
Q psy210 803 SAVGYQPTLAEEMGKLQERISSTK-NGTITSVQAIYVP-ADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880 (915)
Q Consensus 803 ~~~gyp~~l~~~l~~l~ERag~~~-~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~ 880 (915)
+ +||||++|+.+++|+||||+.+ +||||+|+||+++ ++|++|||.+++++++||||||||+||++|||||||+++|.
T Consensus 248 s-~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~ 326 (380)
T PRK12608 248 S-GGVDARALQRPKRLFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSG 326 (380)
T ss_pred C-CCcChHHHhhhHHHHHhcCCCCCCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCccccc
Confidence 9 8999999999999999999865 8999999999999 78889999999999999999999999999999999999999
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHccHhhhhc
Q psy210 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKDT 913 (915)
Q Consensus 881 SR~~~~~~~~~~~~~~~~~~r~~l~~~~e~~~~ 913 (915)
||+| +.+++++|++.++++|++|+.|++.|.+
T Consensus 327 sR~~-~~l~~~~~~~~~~~~R~~l~~~~~~e~~ 358 (380)
T PRK12608 327 TRRE-ELLLDSKELEKVRRLRRALASRKPVEAM 358 (380)
T ss_pred Ccch-hhcCCHHHHHHHHHHHHHHHccCHHHHH
Confidence 9999 5899999999999999999999999865
No 102
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.2e-69 Score=664.16 Aligned_cols=205 Identities=29% Similarity=0.443 Sum_probs=197.2
Q ss_pred CCcEEEEEEecCCCchHHHHHHHhhh-------cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEec
Q psy210 710 HKGCSVFIGVGERSREGNDFYHEMKE-------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFID 782 (915)
Q Consensus 710 ~~~~~v~~~iGer~~ev~e~~~~~~~-------~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~D 782 (915)
++|+|||++||||++||+||++++.+ .+.|+|||+|+||||+||.+|++++|+|+|+||||||+|+|||+++|
T Consensus 681 ~adi~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd~G~~Vll~~D 760 (1017)
T PRK14698 681 DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMAD 760 (1017)
T ss_pred CCCEEEEEeeccchHHHHHHHHHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 45899999999999999999999954 78899999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCC-------CCCceeEEEEEEecCCCCCCCccccccccc
Q psy210 783 NIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST-------KNGTITSVQAIYVPADDLTDPSPSTTFTHL 855 (915)
Q Consensus 783 s~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~-------~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~ 855 (915)
|+||||+|+||||+++||||+++|||||||+.|++||||||+. ++||||++++|++|+||++|||++++++|+
T Consensus 761 s~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~i~ 840 (1017)
T PRK14698 761 STSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVV 840 (1017)
T ss_pred cchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHHHh
Confidence 9999999999999999999999999999999999999999973 579999999999999999999999999999
Q ss_pred CcEEEeeHHHHhcCCCccccCCCCcccccCCCC-------CCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 856 DSTIVLSRQIAELGIYPAIDPLESYSKQLDPYI-------VGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 856 dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~-------~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
||||+|||+||++||||||||+.|+||+|+ .+ ++++|.+++++++++|++|+|+++|++
T Consensus 841 dg~i~L~~~La~~g~~PAId~l~S~Sr~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~ 906 (1017)
T PRK14698 841 KVFWALDADLARRRHFPAINWLTSYSLYVD-AVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVR 906 (1017)
T ss_pred CcEEecCHHHHhCCCCCCcCcccchhhhcc-cccchhccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 44 689999999999999999999999874
No 103
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=2e-67 Score=569.04 Aligned_cols=331 Identities=27% Similarity=0.433 Sum_probs=314.4
Q ss_pred hhccccceeeeccccCccCcccCCe-EEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccccc
Q psy210 583 QQQIGENIVRTIAFGNTNGIKRNTI-VVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIF 661 (915)
Q Consensus 583 ~~~l~~~~v~l~~~~~~~gl~~G~~-V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~ 661 (915)
+..++.+.+.+++|+.|.||...+. |+++|+++++|+++++|||++|+.|+|||+++.+..+++.++.+.|.||..|..
T Consensus 46 Vle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~vs~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~y 125 (463)
T COG1156 46 VLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIY 125 (463)
T ss_pred EeeccCceEEEEEeecccCCCCCCceEEEeCceEEEeecHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhC
Confidence 3567889999999999999998777 999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcC---CcEEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 662 NNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH---KGCSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~---~~~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
+.++++|||++||+|+++.||||.+||+++|.+++.|+.+|+++..... .-.+||+++|-..+|...|.+++++.|+
T Consensus 126 P~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~LaaqIarQA~v~~~~e~favVfaamGit~eea~fF~~~fe~tGa 205 (463)
T COG1156 126 PEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGA 205 (463)
T ss_pred hhhHhhcCccHHhhhhhhhcccccccccCCCCchHHHHHHHHHhcccCCCccceeEEEeecCccHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999754321 1258999999999999999999999999
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC-CCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~ 817 (915)
++|+++|.|.+|+|+.+|+.+|.+|+|.||||+.+ ++|||+++.|||.||+|+||||.+.+|.|+++|||+|+|++|+.
T Consensus 206 l~r~vlflnlA~dp~vEri~tPr~aLt~AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLat 285 (463)
T COG1156 206 LDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLAT 285 (463)
T ss_pred hhhhHhhhhccCCCceeEecchhHHHHHHHHHhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHH
Confidence 99999999999999999999999999999999987 89999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCC-----
Q psy210 818 LQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVG----- 890 (915)
Q Consensus 818 l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~----- 890 (915)
+|||||+. ++||||.+++.++|+||+||||||+|.+||+|||+|||+|+++|+||+||++.|+||+|+ ..+|
T Consensus 286 iYErAg~i~g~~GSiTqipIlTMP~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~-~giG~g~TR 364 (463)
T COG1156 286 IYERAGRIRGRKGSITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMK-DGIGEGKTR 364 (463)
T ss_pred HHHhhceeccCCCceEEEEeeecCCCCcCCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhh-cccCCCccc
Confidence 99999974 589999999999999999999999999999999999999999999999999999999995 5555
Q ss_pred HHHHHHHHHHHHHHHccHhhhhcc
Q psy210 891 EEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 891 ~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
++|.++++++.+.|++.++++++.
T Consensus 365 eDH~~~snql~a~YA~g~d~r~l~ 388 (463)
T COG1156 365 EDHGDVSNQLYAAYAEGRDLRELV 388 (463)
T ss_pred cccHHHHHHHHHHHhcchhHHHHH
Confidence 589999999999999999998864
No 104
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=8.3e-66 Score=537.50 Aligned_cols=211 Identities=45% Similarity=0.754 Sum_probs=202.6
Q ss_pred ccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEE
Q psy210 668 TGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYG 747 (915)
Q Consensus 668 TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~ 747 (915)
||||+||+|+|||||||++|||++|+|||+|+++|++++. .|++||++||||++|++||+++++++++++||++|++
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~ 77 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAA 77 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhcccccccccccc
Confidence 8999999999999999999999999999999999999975 4788999999999999999999999999999999999
Q ss_pred cCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCC--
Q psy210 748 QMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST-- 825 (915)
Q Consensus 748 t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~-- 825 (915)
|+|+||.+|++++++|+++||||||+|||||+++||+||||+|+|||++++||+|+++|||+++|+.+++|+||+|+.
T Consensus 78 t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~ERag~~~~ 157 (215)
T PF00006_consen 78 TSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYERAGKVNS 157 (215)
T ss_dssp ETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHTTSEEBST
T ss_pred cchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcc
Q psy210 826 --KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS 881 (915)
Q Consensus 826 --~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~S 881 (915)
++||||++++|++|+||++|||++++++++||||+|||+||++||||||||++|+|
T Consensus 158 ~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 158 EEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp TTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred ccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 89999999999999999999999999999999999999999999999999999997
No 105
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.5e-64 Score=558.30 Aligned_cols=338 Identities=17% Similarity=0.246 Sum_probs=297.6
Q ss_pred hcccccccchhhHHHHHHHHHHHHhhhcccccchhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCccc
Q psy210 545 KNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTL 624 (915)
Q Consensus 545 ~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lL 624 (915)
..|+|+.++. =.+|||....++.....+++ ++.++++-+ +|+.||.|.+.-++.+-.-...-|
T Consensus 51 ~~g~le~~~~---------g~gflr~~~~~y~~~~~d~y--vs~~~ir~~------~lr~gd~v~g~~r~~~~~e~~~~l 113 (416)
T PRK09376 51 GEGVLEILPD---------GFGFLRSPDANYLPGPDDIY--VSPSQIRRF------NLRTGDTVEGKIRPPKEGERYFAL 113 (416)
T ss_pred EEEEEEEcCC---------CCeEEeCCCcCCCCCCCCee--eCHHHHHhc------CCCCCCEEEEEeeCCCCCCCccce
Confidence 3477765542 24678887778888888887 788888755 799999999877765433333356
Q ss_pred ceEEcccCccCCCCCCCCCCCCCccCCCCC-Cccccccccc--cccccceeeecccccccCCeeeeccCCCCChhhHHHH
Q psy210 625 GRILNVLGDPIDNKGEINSKKKSPIHTLPP-KFSNQIFNNN--ILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMME 701 (915)
Q Consensus 625 GrV~d~~G~pid~~~~~~~~~~~pi~~~~p-~~~~r~~~~e--~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~ 701 (915)
-+|..++|.+.+. ..++.+++..+| +|.+|..+.+ ++.||+|+||+|+|||||||++||||+|+|||||+++
T Consensus 114 ~~v~~vng~~~~~-----~~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~ 188 (416)
T PRK09376 114 LKVETVNGEDPEK-----ARNRPLFENLTPLYPNERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQN 188 (416)
T ss_pred EEEeeeCCCCHHH-----hcCCCCcccCCCCChhhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHHHH
Confidence 6899998887763 235566666544 5666777776 6999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEE-EEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEE
Q psy210 702 LIRNIAIEHKGCS-VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLF 780 (915)
Q Consensus 702 i~~~~~~~~~~~~-v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~ 780 (915)
|++++..+|.|++ ++++||||++|++++++++. .+||+||+|+||..|+++++.++++||||+++|+||+|+
T Consensus 189 Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl-------g~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~ 261 (416)
T PRK09376 189 IANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK-------GEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVIL 261 (416)
T ss_pred HHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc-------CcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999887778876 55699999999999999985 379999999999999999999999999999999999999
Q ss_pred ecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCC-CCCceeEEEEEEec-CCCCCCCcccccccccCcE
Q psy210 781 IDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST-KNGTITSVQAIYVP-ADDLTDPSPSTTFTHLDST 858 (915)
Q Consensus 781 ~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~-~~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~ 858 (915)
+||+||||+||||+++++||+|+ +||+|+.++.+++|+|||++. ++||||+|+||+++ ++++.|||.+++.++.|||
T Consensus 262 iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ 340 (416)
T PRK09376 262 LDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNME 340 (416)
T ss_pred EEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCCCCcceEEEEEEEecCCCCCCccHHHHHhhhcCce
Confidence 99999999999999999999999 899999999999999999986 79999999999999 7778899999999999999
Q ss_pred EEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHHHHHHccHhhhhc
Q psy210 859 IVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKDT 913 (915)
Q Consensus 859 ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r~~l~~~~e~~~~ 913 (915)
|+|||+||++||||||||++|.||++ +.+++++|++.++++|++|+.|++.|.+
T Consensus 341 ivLdR~lA~~r~fPAIDi~~S~sR~~-~~l~~~~~~~~~~~lR~~l~~~~~~e~~ 394 (416)
T PRK09376 341 LHLDRKLAEKRIFPAIDINRSGTRKE-ELLLSPEELQKVWILRKILSPMDEVEAM 394 (416)
T ss_pred EeECHHHHhcCCCCccCccccccccc-cccCCHHHHHHHHHHHHHHHccCcHHHH
Confidence 99999999999999999999999998 5899999999999999999999988764
No 106
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.3e-63 Score=565.34 Aligned_cols=321 Identities=21% Similarity=0.267 Sum_probs=274.9
Q ss_pred HHHHhhhcccccchhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccC------CCcccceEEcccCccCCCC
Q psy210 565 IKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPV------GDCTLGRILNVLGDPIDNK 638 (915)
Q Consensus 565 i~~Lr~~~~~lv~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~v------g~~lLGrV~d~~G~pid~~ 638 (915)
.+||+.. .|+....+++ +..++++- .||+.||.|...-++.+-.- ...-|-+|-.++|.+.+.
T Consensus 306 ~gFlR~~--~y~~~~~Dvy--vs~~qirr------~~Lr~Gd~v~G~vr~p~~~e~~~~r~k~~~l~~v~~vNg~~~e~- 374 (672)
T PRK12678 306 YAFVRTS--GYLPGPNDVY--VSMNQVRK------NGLRKGDAVTGAVRAPREGEQGNQRQKFNPLVRLDSVNGMSPEE- 374 (672)
T ss_pred eeEeeCC--CCCCCCCCee--eCHHHHHH------cCCCCCCEEEEeecCCCCCccccccceeeeeeeEeeeCCCChHH-
Confidence 4466653 5666667776 66666664 58999999997655433222 112556777777766653
Q ss_pred CCCCCCCCCccCCCCC-Ccccccccc-ccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEE-E
Q psy210 639 GEINSKKKSPIHTLPP-KFSNQIFNN-NILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCS-V 715 (915)
Q Consensus 639 ~~~~~~~~~pi~~~~p-~~~~r~~~~-e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~-v 715 (915)
..++.+|+..+| +|.+|..+. +++.||+|+||+|+|||||||++||||+|+|||+||++|++++.++|+++. +
T Consensus 375 ----~~~r~~F~~Ltp~~P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~i 450 (672)
T PRK12678 375 ----AKKRPEFGKLTPLYPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLM 450 (672)
T ss_pred ----hccCCCcccCCCCChHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEE
Confidence 345666766555 556677776 799999999999999999999999999999999999999999888888874 5
Q ss_pred EEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhh
Q psy210 716 FIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVS 795 (915)
Q Consensus 716 ~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis 795 (915)
|+|||||++||++|.+.+ +..||++|+|+||..|++++|+|+++||||+|+|+|||||+|||||||+||||++
T Consensus 451 vvLIgERpeEVtdm~rsV-------kgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ArAyrev~ 523 (672)
T PRK12678 451 VVLVDERPEEVTDMQRSV-------KGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAA 523 (672)
T ss_pred EEEEeCchhhHHHHHHhc-------cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHHHHHHHHhh
Confidence 779999999999986554 3349999999999999999999999999999999999999999999999999999
Q ss_pred hhcCC-----CCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEec-CCCCCCCcccccccccCcEEEeeHHHHhcC
Q psy210 796 AMLGR-----TPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVP-ADDLTDPSPSTTFTHLDSTIVLSRQIAELG 869 (915)
Q Consensus 796 ~~~ge-----~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~ivLsr~La~~g 869 (915)
+++|+ +|+..+|||++|+.+++++|+ +||||+|+||+++ ++++.+||.++..++.||||+|||+||++|
T Consensus 524 ~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE~-----gGSLTii~TvLVETGS~mDd~Ifeefkgtgn~elvLsR~LAerr 598 (672)
T PRK12678 524 PASGRILSGGVDSTALYPPKRFFGAARNIEN-----GGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADKR 598 (672)
T ss_pred cCCCCccCCCCchhhccCccHHHHHHHhhcc-----CccceeeEEEEeccCCccCcchHHHHhhccCceeeECHHHHhCC
Confidence 99999 688999999999999999984 8999999999999 555668999999999999999999999999
Q ss_pred CCccccCCCCcccccCCCCCCHHHHHHHHHHHHHHHccHhhhhc
Q psy210 870 IYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKDT 913 (915)
Q Consensus 870 ~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r~~l~~~~e~~~~ 913 (915)
|||||||++|+||++ ..+++++|++.++++|++|+.|...+.|
T Consensus 599 ifPAIDv~~S~SR~e-e~l~~~~e~~~~~~lRr~l~~~~~~~a~ 641 (672)
T PRK12678 599 IFPAVDVNASGTRKE-ELLLSPDELAIVHKLRRVLSGLDSQQAI 641 (672)
T ss_pred CCCccCCCcCccccc-hhhCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999 5899999999999999999999887654
No 107
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=4.8e-63 Score=546.82 Aligned_cols=319 Identities=18% Similarity=0.192 Sum_probs=287.9
Q ss_pred cccccccCCCcccccCccceeccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccc-cccceeeec
Q psy210 172 DDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPL-LTGIKSIDS 250 (915)
Q Consensus 172 ~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l-~TGi~aiD~ 250 (915)
-...+++.|+.|.+++++ ++++.+||||+|.+|+|+|+.. ......+..|++|.+|..+.++. .+|+|+||.
T Consensus 54 i~~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~ 126 (380)
T PRK12608 54 IRRFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDL 126 (380)
T ss_pred HHHhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhh
Confidence 345689999999999987 9999999999999999999873 22345677889999999999999 999999999
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhh---cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCH
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQ---KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSA 327 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~---~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~ 327 (915)
|.|||+|||++|+|++|+|||+| +.+|++. ++.+++|+|++||||++|+.+|++.+.. +++++++|+++
T Consensus 127 l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~-------~Vvast~de~~ 198 (380)
T PRK12608 127 VAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG-------EVYASTFDRPP 198 (380)
T ss_pred eeecCCCceEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh-------hEEeecCCCCH
Confidence 99999999999999999999999 5666653 3458889999999999999999999853 78888999999
Q ss_pred HHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchh
Q psy210 328 AEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407 (915)
Q Consensus 328 ~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~ 407 (915)
..+..+.++++++||||+++|+||++++||+||||+||||++++.||||+ +|||+++|+.+++|+||||++++
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~rl~~~A~~~~~------ 271 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKRLFGAARNIEE------ 271 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHHHHHhcCCCCC------
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999753
Q ss_pred hhccCCCCccceeEEEEec-CCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHH
Q psy210 408 KIFNKNNGTLTAFPIIETL-EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486 (915)
Q Consensus 408 ~~~~~~~GSiT~~~~v~~~-~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~l 486 (915)
+||||+|+||+++ |+||+|||+|++++++||||+|||+||++|||||||+++|.||.+....+++|.+.++.+
T Consensus 272 ------~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~~~l~~~~~~~~~~~~ 345 (380)
T PRK12608 272 ------GGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLLDSKELEKVRRL 345 (380)
T ss_pred ------CcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcchhhcCCHHHHHHHHHH
Confidence 7999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHHHHhhc
Q psy210 487 RIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQ 526 (915)
Q Consensus 487 r~~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~~fL~Q 526 (915)
|+.|+.|++.+.+-.+- ..|++.+.-.+||++
T Consensus 346 R~~l~~~~~~e~~~~~~--------~~~~~~~~n~~~~~~ 377 (380)
T PRK12608 346 RRALASRKPVEAMEALL--------EKLRETPDNAEFLNS 377 (380)
T ss_pred HHHHHccCHHHHHHHHH--------HHHhcCCCHHHHHHh
Confidence 99999999988876443 233444444455554
No 108
>KOG1350|consensus
Probab=100.00 E-value=1e-62 Score=514.67 Aligned_cols=403 Identities=23% Similarity=0.319 Sum_probs=355.7
Q ss_pred hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceee
Q psy210 131 PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFI 210 (915)
Q Consensus 131 p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~Pi 210 (915)
|..||. |+++..+... .=+|.---| + ..+.+..+..+.|+..|.+|..||.|.++|+|...|||++|.+|+||
T Consensus 72 P~ilNa-Lev~~~~~~l-vlEV~qhlG--~---n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipVG~~tLGRI~NViGePi 144 (521)
T KOG1350|consen 72 PPILNA-LEVKGRDTRL-VLEVAQHLG--E---NTVRTIAMDGTEGLVRGQKVLDTGYPISIPVGPETLGRIMNVIGEPI 144 (521)
T ss_pred cchhhc-eeecCCCcee-eeHHHHHhC--c---CeEEEEEecCchhhhcCcccccCCCceeeecCHHHHhhHHHhcCCcc
Confidence 766664 6667666551 111111112 2 23566677899999999999999999999999999999999999999
Q ss_pred cCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhh-cCCCeEEE
Q psy210 211 DNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ-KNKNVICI 289 (915)
Q Consensus 211 D~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~-~~~~~~~V 289 (915)
|..+|+....+.+++..+|...+-..-.|.|.||||++|.|.|..||.|+|+||++|+|||+|.++.|.|- +.++-..|
T Consensus 145 DerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlImELINNiAKaHGGySV 224 (521)
T KOG1350|consen 145 DERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSV 224 (521)
T ss_pred cccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeHHHHHHHHHHhcCCeEE
Confidence 99999999999999999999999888889999999999999999999999999999999999976766663 56677799
Q ss_pred EEeeccchhhHHHHHHHHhccCCc------ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHh-cCCcEEEEeccchhHH
Q psy210 290 YVCIGQKISSLINVINKLKYYNCM------DYTVVVAATAADSAAEQYISPYTGCTIGEYFRD-LGQDCLIIYDDLTKHA 362 (915)
Q Consensus 290 ~~~iGer~~ev~~~~~~l~~~~~~------~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~-~g~~Vlv~~Ddltr~a 362 (915)
|+++|||.||.++++.++.+.|++ ++..+|...+++||..|.+.+.+++|+|||||| .|+|||+++|++.||.
T Consensus 225 F~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFt 304 (521)
T KOG1350|consen 225 FAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFT 304 (521)
T ss_pred eeccccccccccHHHHHHHhcCeeeccCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhccccceEEEeehhhhhhh
Confidence 999999999999999999998874 688999999999999999999999999999997 6999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccccccccc
Q psy210 363 WAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISIT 442 (915)
Q Consensus 363 ~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~ 442 (915)
+|-.|+|.++||+|+..||+|.+-.++..+.||-. ++++||||.+++|++|.||++||.|..+.+++
T Consensus 305 QAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERIT-------------tTkkGSiTSvQAvYVPADDLtDPaPattFaHL 371 (521)
T KOG1350|consen 305 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQERIT-------------TTKKGSITSVQAVYVPADDLTDPAPATTFAHL 371 (521)
T ss_pred ccchHHHHHhccCccccccCcccccchhhhhHhhh-------------ccccCceeEEEEEEeehhccCCCCccceeecc
Confidence 99999999999999999999999999999999844 44589999999999999999999999999999
Q ss_pred CcEEEeehhhhhcCCCCeeeecCCcccccc-ccccHHHHHHHHHHHHHHHhhHHHHhhhhc-c-CCCCHHHHHHHHhHHH
Q psy210 443 DGQIFLDTNLFNSNYRPAINVGLSVSRVGG-AAQYKIVKKLSGDIRIMLAQYRELESFSKF-S-SDLDIVTKTQLYNGEK 519 (915)
Q Consensus 443 dgqi~Lsr~la~~g~~PaId~~~S~SR~~~-~~~~~~~~~~a~~lr~~la~~~e~e~l~~l-G-~~ld~~~~~~L~~~~~ 519 (915)
|..-+|||.+++.|+|||+||+.|.||+|. .+.-++|+.+|..+.+.|+.|+.+++++.+ | ++|+++++..++++++
T Consensus 372 DAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG~eHY~vA~~Vqk~LQ~YKsLQDIIAILGmDELSEeDkLTV~RARK 451 (521)
T KOG1350|consen 372 DATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGEEHYNVARGVQKTLQDYKSLQDIIAILGMDELSEEDKLTVARARK 451 (521)
T ss_pred chhhhhhhhhHhcCCccccCCccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhchhhhhhHHHHHH
Confidence 999999999999999999999999999994 456699999999999999999999999985 6 6999999999999999
Q ss_pred HHHHhhcCCCC----------CccHHHHHHHHHHHhcccccccc
Q psy210 520 ISLLMKQKPHE----------NYSIVELIIILLIIKNRFFFKIP 553 (915)
Q Consensus 520 i~~fL~Q~~~e----------~~s~ee~l~~L~ai~~G~Ld~vp 553 (915)
|++||.|++.- ..++++++.-...+..|-+|.+|
T Consensus 452 iqRFLSQPF~VAEvFTG~~GklV~l~~ti~gF~~iL~Ge~D~lP 495 (521)
T KOG1350|consen 452 IQRFLSQPFQVAEVFTGHPGKLVPLEETIRGFKAILEGEYDHLP 495 (521)
T ss_pred HHHHHcCchhhhhhhcCCCCceecHHHHHHHHHHHhcCcccCCc
Confidence 99999998642 23556666666666666666555
No 109
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=5.7e-63 Score=516.18 Aligned_cols=215 Identities=44% Similarity=0.699 Sum_probs=201.6
Q ss_pred ccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEec
Q psy210 243 TGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAAT 322 (915)
Q Consensus 243 TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~ 322 (915)
||||+||.|+|||||||++|||++|+|||+| +.+|+++.+.|.. ||++||||++|+.+|++++++.++++|+++|+++
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~L-l~~i~~~~~~d~~-V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t 78 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVL-LQEIANNQDADVV-VYALIGERGREVTEFIEELKGEGALERTVVVAAT 78 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHH-HHHHHHHCTTTEE-EEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEE
T ss_pred CCCceeccccccccCCEEEEEcCcccccchh-hHHHHhcccccce-eeeeccccchhHHHHHHHHhhccccccccccccc
Confidence 8999999999999999999999999999999 6777777677764 9999999999999999999999999999999999
Q ss_pred CCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhccccc
Q psy210 323 AADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKY 402 (915)
Q Consensus 323 a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~ 402 (915)
+|+|+.+|++++++||++||||||+|+|||+++|||||||+|+|||++++||||+++|||+++|+.+++|+||||++..
T Consensus 79 ~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~ERag~~~~- 157 (215)
T PF00006_consen 79 SDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYERAGKVNS- 157 (215)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHTTSEEBST-
T ss_pred chhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHHHhhcccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999832
Q ss_pred ccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcc
Q psy210 403 FLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS 468 (915)
Q Consensus 403 ~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~S 468 (915)
.+++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+|
T Consensus 158 --------~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 158 --------EEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp --------TTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred --------ccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 2248999999999999999999999999999999999999999999999999999987
No 110
>KOG1351|consensus
Probab=100.00 E-value=7.3e-63 Score=511.08 Aligned_cols=329 Identities=27% Similarity=0.425 Sum_probs=310.7
Q ss_pred hccccceeeeccccCccCcc-cCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccccc
Q psy210 584 QQIGENIVRTIAFGNTNGIK-RNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFN 662 (915)
Q Consensus 584 ~~l~~~~v~l~~~~~~~gl~-~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~~ 662 (915)
+.++++.+..++|+.|+|+. ....|.+||..++.||++++||||+|+.|+|||.++++..+++..+.+.|.||..|-.+
T Consensus 64 lev~g~kavvqvfegtsgid~k~t~~eftg~~lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riyp 143 (489)
T KOG1351|consen 64 LEVSGEKAVVQVFEGTSGIDAKKTTVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYP 143 (489)
T ss_pred EEecCCeeEEEEeccccccccccceEEEecccccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccCh
Confidence 57789999999999999997 67889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHH--Hh--------cCCc--EEEEEEecCCCchHHHHH
Q psy210 663 NNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI--AI--------EHKG--CSVFIGVGERSREGNDFY 730 (915)
Q Consensus 663 ~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~--~~--------~~~~--~~v~~~iGer~~ev~e~~ 730 (915)
.|+++|||.+||.|+.|.||||++||+.+|.+++.++.+|+|.. .+ .|.| .+||+++|..-+..+.|.
T Consensus 144 eemiqtgis~idvmnsiargqkipifsaaglphneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk 223 (489)
T KOG1351|consen 144 EEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFK 223 (489)
T ss_pred HHHHHhCchHHhhhhHHhccCccceeecCCCChhHHHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999952 11 1111 589999999999999999
Q ss_pred HHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC-CCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcc
Q psy210 731 HEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP 809 (915)
Q Consensus 731 ~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~ 809 (915)
++|++.|.|+|.+++.+.+|+|..+|+..|..|++.||||+.+ +||||+++.|++.||+|+||+|.+..|.|+++|||+
T Consensus 224 ~dfeengsm~~v~lflnlandptieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pg 303 (489)
T KOG1351|consen 224 QDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPG 303 (489)
T ss_pred hhHHhcCCccceEEEEecCCCCchhhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCc
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCC
Q psy210 810 TLAEEMGKLQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPY 887 (915)
Q Consensus 810 ~l~~~l~~l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~ 887 (915)
|+|.+|+.+|||||+. ++||||.++++++|.||++|||||.|.+||+|||+.||+|+++.+||+||++.|+||+|+..
T Consensus 304 ymytdlatiyeragrvegr~gsitqipiltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksa 383 (489)
T KOG1351|consen 304 YMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 383 (489)
T ss_pred eehhhHHHHHHHhcccccCCCceeeeeeEecCCcccCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHH
Confidence 9999999999999974 68999999999999999999999999999999999999999999999999999999999643
Q ss_pred CCC-----HHHHHHHHHHHHHHHccHhhhhc
Q psy210 888 IVG-----EEHYKVANEVKFYLQKYKELKDT 913 (915)
Q Consensus 888 ~~~-----~~~~~~~~~~r~~l~~~~e~~~~ 913 (915)
+| ++|.++++++...|+--++++.|
T Consensus 384 -igegmtr~dh~dvsnqlya~yaigkdvqam 413 (489)
T KOG1351|consen 384 -IGEGMTRKDHSDVSNQLYACYAIGKDVQAM 413 (489)
T ss_pred -hcCCcccccchhhHHHHHHHHHhcchHHHH
Confidence 44 69999999999999988887765
No 111
>KOG1352|consensus
Probab=100.00 E-value=9.7e-64 Score=533.52 Aligned_cols=343 Identities=24% Similarity=0.420 Sum_probs=308.5
Q ss_pred HHHHHhhhcccccchhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCC----
Q psy210 564 IIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKG---- 639 (915)
Q Consensus 564 Li~~Lr~~~~~lv~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~---- 639 (915)
+.+..|--+.+++. |+ ..++++.+.+++|++|+|+.+||+|..||+|+++.+|++++|.|+|+..||+....
T Consensus 42 MYELVrVGh~~LvG---Ei-IrlegD~aTIQVYEeTsG~tVgDpvlrTgkPLsvELGPGimgsIfDGIQRPLk~I~~~s~ 117 (618)
T KOG1352|consen 42 MYELVRVGHDELVG---EI-IRLEGDMATIQVYEETSGLTVGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDISELSQ 117 (618)
T ss_pred HHHHHHcchHhhhh---he-eEecCceeEEEEEeccCCcccCCchhhcCCcceEeeCcchhhhhhhhhhhhHHHHHHhcC
Confidence 44445555554432 33 57899999999999999999999999999999999999999999999999984310
Q ss_pred -----------CC-------------------------------------------------------------------
Q psy210 640 -----------EI------------------------------------------------------------------- 641 (915)
Q Consensus 640 -----------~~------------------------------------------------------------------- 641 (915)
.+
T Consensus 118 siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpPr~~Gtvt~iAp~G~Y~~~d~vlE~E 197 (618)
T KOG1352|consen 118 SIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPPRARGTVTYIAPAGNYTLDDVVLELE 197 (618)
T ss_pred cEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecCCccCceEEEEecCCccccccEEEEEe
Confidence 00
Q ss_pred --------CCCCCCccCCCCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcE
Q psy210 642 --------NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC 713 (915)
Q Consensus 642 --------~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~ 713 (915)
..-+.||+.. |.+..+..+.+.||-||.|++|.|+||++|+...|.|..|||||++.+.+.+. +|.|+
T Consensus 198 f~g~k~~~tmlq~WPVR~-pRPv~ekl~an~PLltGQRvLDalfPcVqGGTtaIPGAFGCGKTVISQsLSKY---SNSD~ 273 (618)
T KOG1352|consen 198 FDGEKTKFTMLQTWPVRQ-PRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDA 273 (618)
T ss_pred ecCceeeEEEEEecccCC-CcchhhccCCCCcccccchHHHhhcchhcCCccccCcccccchHHHHHHHhhc---cCCCe
Confidence 0015689964 55677888999999999999999999999999999999999999999999886 34799
Q ss_pred EEEEEecCCCchHHHHHHHhhh---------cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecch
Q psy210 714 SVFIGVGERSREGNDFYHEMKE---------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNI 784 (915)
Q Consensus 714 ~v~~~iGer~~ev~e~~~~~~~---------~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~ 784 (915)
+||++||||++|+.|++.+|.+ +.+|+||.+|+||||+|...|..+.|+++|+||||||+|+||-+|.||.
T Consensus 274 iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREASIYTGITlsEYfRDmG~nVsMmADSt 353 (618)
T KOG1352|consen 274 IIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADST 353 (618)
T ss_pred EEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCchhhhhhhhhhcccHHHHHHhcCcceeeeecch
Confidence 9999999999999999999866 5689999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcC-------CCCCceeEEEEEEecCCCCCCCcccccccccCc
Q psy210 785 YRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISS-------TKNGTITSVQAIYVPADDLTDPSPSTTFTHLDS 857 (915)
Q Consensus 785 tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~-------~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg 857 (915)
+|||+|+||||..++|+|+..|||+||...|++||||||+ .+.||+|++++|++|+||++|||+.+|.+|++.
T Consensus 354 SRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP~ReGsVsIVgAVSPpGGDFsDPVTsATLgIvQV 433 (618)
T KOG1352|consen 354 SRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQV 433 (618)
T ss_pred hHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCCCcCceeEEEEeecCCCCCcCCcchhhhhheeee
Confidence 9999999999999999999999999999999999999985 478999999999999999999999999999999
Q ss_pred EEEeeHHHHhcCCCccccCCCCcccccCCCC------CCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 858 TIVLSRQIAELGIYPAIDPLESYSKQLDPYI------VGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 858 ~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~------~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
+|.||++||+|.|||.|||+.|+|++|.. + ..+++..+..++|++|++.++|.+++|
T Consensus 434 FWGLDKKLAQRKHFPSiNwliSYSkY~~a-L~~~Ye~~~peF~~lRtk~keilq~eedl~eivQ 496 (618)
T KOG1352|consen 434 FWGLDKKLAQRKHFPSINWLISYSKYMRA-LDPFYEKNYPEFVVLRTKAKEILQEEEDLSEIVQ 496 (618)
T ss_pred hhcccHHHHhhccCCccchhhhHHHHHHH-HHHHHHhcCCCccchHHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999842 1 235777899999999999999999875
No 112
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=1.7e-61 Score=536.31 Aligned_cols=332 Identities=27% Similarity=0.404 Sum_probs=303.8
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCC--------------CCC---
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNK--------------GEI--- 641 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~--------------~~~--- 641 (915)
+.|+ ..+.++++.+++|++|.||++|++|.+||+|+++.+|+++|+.|+|+.+||++.. +++
T Consensus 35 ~gEi-I~i~gd~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPGll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~ 113 (588)
T COG1155 35 IGEI-IRIEGNRATIQVYEDTAGIRPGEKVENTGRPLSVELGPGLLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRK 113 (588)
T ss_pred eEEE-EEEeCCeEEEEEEeecCCCCCCCeeecCCCceEEEeCccHHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcc
Confidence 3445 5789999999999999999999999999999999999999999999999998541 000
Q ss_pred -----------------------------------------------------------------------CCCCCCccC
Q psy210 642 -----------------------------------------------------------------------NSKKKSPIH 650 (915)
Q Consensus 642 -----------------------------------------------------------------------~~~~~~pi~ 650 (915)
...++||+.
T Consensus 114 ~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR 193 (588)
T COG1155 114 KKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVR 193 (588)
T ss_pred cccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCceeeEEEEEEecCCCeEEEEEEEecccc
Confidence 012679996
Q ss_pred CCCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHH
Q psy210 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFY 730 (915)
Q Consensus 651 ~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~ 730 (915)
.+ .+..++.++.+||.||+|+||+|+|+.||+..+|.||.|+|||++.++++++.. .|++||++||||++|++|++
T Consensus 194 ~~-rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKTV~qh~laK~sd---adiVVyigCGERGNEmtevL 269 (588)
T COG1155 194 KA-RPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVSQHTLSKLAD---GDIVIYVGCGERGNEMTEVL 269 (588)
T ss_pred CC-ccccccCCCCCcccccceeehhhcccccCccccccCCCCCCcEehhhhhhhhcc---CCEEEEEecCCccchHHHHH
Confidence 54 456889999999999999999999999999999999999999999999999854 58999999999999999999
Q ss_pred HHhhh-------cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCC
Q psy210 731 HEMKE-------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPS 803 (915)
Q Consensus 731 ~~~~~-------~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~ 803 (915)
.+|.+ ...|+||++|+||||+|.+.|+.+.|+|+|+||||||+|+||+++.||.+|||+|+||||..++|+|+
T Consensus 270 ~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPg 349 (588)
T COG1155 270 QEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPG 349 (588)
T ss_pred HhCccccCCCCCCcccceeeEeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCc
Confidence 99876 35699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHhcC-------CCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccC
Q psy210 804 AVGYQPTLAEEMGKLQERISS-------TKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDP 876 (915)
Q Consensus 804 ~~gyp~~l~~~l~~l~ERag~-------~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv 876 (915)
.+|||+||.+.+++||||+|. .+.||+|++++|+.+++|+++|++.+|+.+...+|-||++||+++|||||||
T Consensus 350 eegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInw 429 (588)
T COG1155 350 EEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINW 429 (588)
T ss_pred ccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccCh
Confidence 999999999999999999995 2459999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCC------CCCCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 877 LESYSKQLDP------YIVGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 877 ~~S~SR~~~~------~~~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
+.|+|.+.+. .-+++++.++..+++++|++..|++++++
T Consensus 430 l~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~ 474 (588)
T COG1155 430 LNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQ 474 (588)
T ss_pred HHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998641 12567889999999999999999998864
No 113
>KOG1352|consensus
Probab=100.00 E-value=2.4e-60 Score=507.47 Aligned_cols=403 Identities=23% Similarity=0.308 Sum_probs=355.2
Q ss_pred EEeecChhhcccc------cccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccc
Q psy210 125 EYDYFDPRCLNQT------LNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFEL 198 (915)
Q Consensus 125 ~~~~~~p~~L~~~------le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~l 198 (915)
.|....|++..+. +|+-......+.|+|+..+| ..+ .+++++++.|+..||+|..||+|+++..|.++
T Consensus 24 v~~VSGPVV~a~~M~G~aMYELVrVGh~~LvGEiIrleg--D~a----TIQVYEeTsG~tVgDpvlrTgkPLsvELGPGi 97 (618)
T KOG1352|consen 24 VYSVSGPVVVAENMAGCAMYELVRVGHDELVGEIIRLEG--DMA----TIQVYEETSGLTVGDPVLRTGKPLSVELGPGI 97 (618)
T ss_pred EEeccCceEehhcccchHHHHHHHcchHhhhhheeEecC--cee----EEEEEeccCCcccCCchhhcCCcceEeeCcch
Confidence 4555568776654 55666666678999999999 444 67899999999999999999999999999999
Q ss_pred ceeEeCCCceeecCCCc-----------cccc------------------------------------------------
Q psy210 199 LGRIVNSKGEFIDNKKK-----------FLIK------------------------------------------------ 219 (915)
Q Consensus 199 LGrviD~lG~PiD~~~~-----------~~~~------------------------------------------------ 219 (915)
+|.++|++.||+..... ..+.
T Consensus 98 mgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpPr~~Gt 177 (618)
T KOG1352|consen 98 MGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPPRARGT 177 (618)
T ss_pred hhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecCCccCce
Confidence 99999999999853100 0000
Q ss_pred -------------------------------ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCC
Q psy210 220 -------------------------------NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQT 268 (915)
Q Consensus 220 -------------------------------~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~ 268 (915)
+.||+..+.| ..+..+-+.||.||.|++|+|+||+.|...+|.|..||
T Consensus 178 vt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRP-v~ekl~an~PLltGQRvLDalfPcVqGGTtaIPGAFGC 256 (618)
T KOG1352|consen 178 VTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRP-VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGC 256 (618)
T ss_pred EEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcc-hhhccCCCCcccccchHHHhhcchhcCCccccCccccc
Confidence 4566665554 56678889999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhc---------cCCcceEEEEEecCCCCHHHhhhhhhhhhh
Q psy210 269 GKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKY---------YNCMDYTVVVAATAADSAAEQYISPYTGCT 339 (915)
Q Consensus 269 GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~---------~~~~~~tvvv~~~a~~~~~~r~~~~~~a~t 339 (915)
|||++ .|.+.+..|+|+ +||++||||++|+.|++.+|.+ ...|+||++|+||+++|.+.|.++.|+++|
T Consensus 257 GKTVI-SQsLSKYSNSD~-iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREASIYTGIT 334 (618)
T KOG1352|consen 257 GKTVI-SQSLSKYSNSDA-IIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREASIYTGIT 334 (618)
T ss_pred chHHH-HHHHhhccCCCe-EEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCchhhhhhhhhhccc
Confidence 99999 799999999998 7899999999999999999876 345999999999999999999999999999
Q ss_pred hHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccce
Q psy210 340 IGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419 (915)
Q Consensus 340 iAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~ 419 (915)
++|||||+|+||-.+.||.+|||+|+||||..++|+|+--|||.++-..+|..|||||+++ |+|+ +++.||+|+
T Consensus 335 lsEYfRDmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vk-cLGs-----P~ReGsVsI 408 (618)
T KOG1352|consen 335 LSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVK-CLGS-----PDREGSVSI 408 (618)
T ss_pred HHHHHHhcCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCcee-ecCC-----CCcCceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999996 6886 688999999
Q ss_pred eEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccc------cHHHHHHHHHHHHHHHhh
Q psy210 420 FPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ------YKIVKKLSGDIRIMLAQY 493 (915)
Q Consensus 420 ~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~------~~~~~~~a~~lr~~la~~ 493 (915)
+++|++||||++||+.+.+.+|..-+|-||++||++.|||.|||+.|+|+++.... .++..-+-.+.|.++++-
T Consensus 409 VgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk~keilq~e 488 (618)
T KOG1352|consen 409 VGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTKAKEILQEE 488 (618)
T ss_pred EEeecCCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHHHHHHHHhcCCCccchHHHHHHHHhhh
Confidence 99999999999999999999999888889999999999999999999999986553 255556677889999999
Q ss_pred HHHHhhhhcc--CCCCHHHHHHHHhHHHH-HHHhhcCCCCCc----cHHHHHHHHH
Q psy210 494 RELESFSKFS--SDLDIVTKTQLYNGEKI-SLLMKQKPHENY----SIVELIIILL 542 (915)
Q Consensus 494 ~e~e~l~~lG--~~ld~~~~~~L~~~~~i-~~fL~Q~~~e~~----s~ee~l~~L~ 542 (915)
.++.+++++. +.|++.++..|+-++.| ++||+|+.++++ ++.+++..|.
T Consensus 489 edl~eivQLVGK~aL~etdKitLevaklik~DfLqQN~ys~YD~~CPfyKt~~Mlr 544 (618)
T KOG1352|consen 489 EDLSEIVQLVGKSALAETDKITLEVAKLIKDDFLQQNGYSPYDRFCPFYKTVGMLR 544 (618)
T ss_pred hhHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhcCCCchhhcCchHHHHHHHH
Confidence 9999999974 68999999999999999 579999999887 4566655544
No 114
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=4.1e-59 Score=518.05 Aligned_cols=338 Identities=16% Similarity=0.241 Sum_probs=285.8
Q ss_pred hcccccccchhhHHHHHHHHHHHHhhhcccccchhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCccc
Q psy210 545 KNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTL 624 (915)
Q Consensus 545 ~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lL 624 (915)
..|+|+.++. =.+|||....++.....+++ ++.++++-+ +|+.||.|.+..++.. +-+-+
T Consensus 51 ~~g~le~~~~---------g~gflr~~~~~~~~~~~d~y--vs~~~i~~~------~lr~gd~v~g~~R~~~---~~ER~ 110 (415)
T TIGR00767 51 GEGVLEILPD---------GFGFLRSPDSSYLPGPDDIY--VSPSQIRRF------NLRTGDTIEGQIRSPK---EGERY 110 (415)
T ss_pred EEEEEEEcCC---------CCeEEeCCCcCCCCCCCCee--eCHHHHHhc------CCCCCCEEEEEEeccc---cHhHH
Confidence 4477775542 24678888778888888888 888888865 7999999998655432 22222
Q ss_pred ceEEcccCccCCCCCCCCCCCCCccCCCCCCcccccccc--ccccccceeeecccccccCCeeeeccCCCCChhhHHHHH
Q psy210 625 GRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNN--NILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMEL 702 (915)
Q Consensus 625 GrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~~~--e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i 702 (915)
-.+++. +++++.++.....+..+....|.+++.+... .+-..|+|+||+++|||+|||++|+|++|+|||+|+.+|
T Consensus 111 ~~Ll~v--~~vn~~~~e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 111 FALLKV--ESVNGDDPEKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred HHHhCC--CccCCCCccccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHH
Confidence 222332 2233333223344567777777776655433 245679999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEE-EEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEe
Q psy210 703 IRNIAIEHKGCS-VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFI 781 (915)
Q Consensus 703 ~~~~~~~~~~~~-v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~ 781 (915)
++++..+|.+++ ++++||||++|+++|++.+. ++||++|+|+||..|.++++.++++||||+++|+||+|++
T Consensus 189 ~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIl-------g~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlI 261 (415)
T TIGR00767 189 AQAITRNHPEVELIVLLIDERPEEVTDMQRSVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILL 261 (415)
T ss_pred HHhhcccCCceEEEEEEcCCCCccHHHHHHHhh-------ceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 998877766654 55689999999999999983 4799999999999999999999999999999999999999
Q ss_pred cchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCC-CCCceeEEEEEEec-CCCCCCCcccccccccCcEE
Q psy210 782 DNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST-KNGTITSVQAIYVP-ADDLTDPSPSTTFTHLDSTI 859 (915)
Q Consensus 782 Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~-~~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~i 859 (915)
||+||||+||||+++++||+|+ +||||++|+.+++|+|||++. ++||||+|+||+++ +++++|||.++.+++.||||
T Consensus 262 DEitR~arAqrei~~~~G~~~s-~G~~~~~~~~~~~~~~~a~~~~~~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~i 340 (415)
T TIGR00767 262 DSITRLARAYNTVTPASGKVLS-GGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEL 340 (415)
T ss_pred EChhHHHHHHHHhHhhcCCCCC-CCcChhhhcccHHHHhhcCCCCCCcchhheEEEEeccCCCCCcchHHHhccccCCeE
Confidence 9999999999999999999999 999999999999999999985 79999999999999 66778899999999999999
Q ss_pred EeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHHHHHHccHhhhhc
Q psy210 860 VLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKDT 913 (915)
Q Consensus 860 vLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r~~l~~~~e~~~~ 913 (915)
+|||+||++|||||||+++|.||++ +.+++++|++.++++|++|+.|.+.+.+
T Consensus 341 vL~r~la~~~~fPAidi~~S~sR~~-~~l~~~~~~~~~~~~r~~l~~~~~~~~~ 393 (415)
T TIGR00767 341 HLDRKLADRRIFPAIDIKKSGTRKE-ELLLTPEELQKIWVLRKIISPMDSIEAM 393 (415)
T ss_pred EECHHHHhCCCCCCcCcccccccch-hhcCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 9999999999999999999999999 5899999999999999999999988754
No 115
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=5.6e-59 Score=516.23 Aligned_cols=390 Identities=24% Similarity=0.298 Sum_probs=343.7
Q ss_pred ccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceeecCC-----
Q psy210 139 NIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNK----- 213 (915)
Q Consensus 139 e~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~----- 213 (915)
++-...+..+.|.|+.++| .- ..+++|+++.|+++|++|.+||+|+++-.|.++|+.++|++.|||+..
T Consensus 25 ~~v~Vg~~~L~gEiI~i~g--d~----a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPGll~~IyDGiQrPL~~i~e~sg 98 (588)
T COG1155 25 DVVKVGEMGLIGEIIRIEG--NR----ATIQVYEDTAGIRPGEKVENTGRPLSVELGPGLLKSIYDGIQRPLDVIKETSG 98 (588)
T ss_pred EEEEEcCCceeEEEEEEeC--Ce----EEEEEEeecCCCCCCCeeecCCCceEEEeCccHHhhhhhhccChHHHHHHHhh
Confidence 3444566778999999999 32 378999999999999999999999999999999999999999999731
Q ss_pred ---------Cccccc-----------------------------------------------------------------
Q psy210 214 ---------KKFLIK----------------------------------------------------------------- 219 (915)
Q Consensus 214 ---------~~~~~~----------------------------------------------------------------- 219 (915)
+++.-.
T Consensus 99 ~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~ytv~d~ia~v~~~ 178 (588)
T COG1155 99 DFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEYTVEDVIATVSTE 178 (588)
T ss_pred hHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCceeeEEEEEEecC
Confidence 000000
Q ss_pred ---------ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEE
Q psy210 220 ---------NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIY 290 (915)
Q Consensus 220 ---------~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~ 290 (915)
++||+..+.| ..++.++++||.||.|+||+|+|+.||+..+|.|+.|+|||++ .+.+++++++|+ +||
T Consensus 179 ~g~~~~~m~~~WPVR~~rp-~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKTV~-qh~laK~sdadi-VVy 255 (588)
T COG1155 179 GGEVDVQMMTTWPVRKARP-VKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVS-QHTLSKLADGDI-VIY 255 (588)
T ss_pred CCeEEEEEEEeccccCCcc-ccccCCCCCcccccceeehhhcccccCccccccCCCCCCcEeh-hhhhhhhccCCE-EEE
Confidence 4677777666 4788999999999999999999999999999999999999999 899999999997 789
Q ss_pred EeeccchhhHHHHHHHHhc-------cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 291 VCIGQKISSLINVINKLKY-------YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 291 ~~iGer~~ev~~~~~~l~~-------~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
++||||++|+++++.+|.+ ..+|+||++++||+++|.+.|+.+.|+|.|+||||||+|+||+++.||.+|||+
T Consensus 256 igCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAE 335 (588)
T COG1155 256 VGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAE 335 (588)
T ss_pred EecCCccchHHHHHHhCccccCCCCCCcccceeeEeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHH
Confidence 9999999999999999876 234899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccC
Q psy210 364 AYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITD 443 (915)
Q Consensus 364 A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~d 443 (915)
|+||||..++|+|+.+|||.++-+.+|+.|||||+.....+ .++.||+|++++|+.|++|+++|+..+|..+.-
T Consensus 336 AlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~------~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~ 409 (588)
T COG1155 336 ALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSP------EERFGSITVIGAVSPPGGDFSEPVTQNTLRVVR 409 (588)
T ss_pred HHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCC------CcceEEEEEecCCCCCCCCcCcccchheeeeee
Confidence 99999999999999999999999999999999999975332 455699999999999999999999999999999
Q ss_pred cEEEeehhhhhcCCCCeeeecCCccccccccc-------cHHHHHHHHHHHHHHHhhHHHHhhhhc-c-CCCCHHHHHHH
Q psy210 444 GQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ-------YKIVKKLSGDIRIMLAQYRELESFSKF-S-SDLDIVTKTQL 514 (915)
Q Consensus 444 gqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~-------~~~~~~~a~~lr~~la~~~e~e~l~~l-G-~~ld~~~~~~L 514 (915)
-++-||++||+++|||||||+.|+|.+-+... .++-.++..++++.+.+-.+++.+.++ | +.+++.++.++
T Consensus 410 vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il 489 (588)
T COG1155 410 VFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSIL 489 (588)
T ss_pred eecccchhhhhcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHH
Confidence 99999999999999999999999999975443 344455566778889999999999997 4 68999999999
Q ss_pred HhHHHHH-HHhhcCCCCCcc----HHHHHHHHHH
Q psy210 515 YNGEKIS-LLMKQKPHENYS----IVELIIILLI 543 (915)
Q Consensus 515 ~~~~~i~-~fL~Q~~~e~~s----~ee~l~~L~a 543 (915)
..++.|+ .||+|+.+++++ +..+..+|..
T Consensus 490 ~va~~ire~fLqQnafd~vD~~~~~~kq~~mm~~ 523 (588)
T COG1155 490 DVARIIREDFLQQNAFDEIDAYCSLRKQYLMLKA 523 (588)
T ss_pred HHHHHHHHHHHhhcccCcccccCCHHHHHHHHHH
Confidence 9999995 799999999874 4555444443
No 116
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=5.4e-58 Score=519.74 Aligned_cols=297 Identities=20% Similarity=0.247 Sum_probs=256.1
Q ss_pred cccccccCCCcccccCccceeccc-c--------ccceeEeCCCceeecCCCccccccccccc-ccCCCCCcccccC-cc
Q psy210 172 DDLKNLTQGQKCFCTEKIFEIPVG-F--------ELLGRIVNSKGEFIDNKKKFLIKNRETVE-KIAPGIMDRESVN-EP 240 (915)
Q Consensus 172 ~~~~gl~~G~~V~~tg~~~~vpvg-~--------~lLGrviD~lG~PiD~~~~~~~~~~~~i~-~~~~~~~~R~~~~-~~ 240 (915)
.-..+|+.|+.|.+.-+ .|.. + ..|-+|-...| ..+.....+..++ -.|++|.+|..+. +|
T Consensus 328 irr~~Lr~Gd~v~G~vr---~p~~~e~~~~r~k~~~l~~v~~vNg-----~~~e~~~~r~~F~~Ltp~~P~~R~~le~e~ 399 (672)
T PRK12678 328 VRKNGLRKGDAVTGAVR---APREGEQGNQRQKFNPLVRLDSVNG-----MSPEEAKKRPEFGKLTPLYPNERLRLETEP 399 (672)
T ss_pred HHHcCCCCCCEEEEeec---CCCCCccccccceeeeeeeEeeeCC-----CChHHhccCCCcccCCCCChHHhcccccCc
Confidence 34457888888876422 2322 2 13334433333 3333333333333 3678999999999 89
Q ss_pred ccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc---CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEE
Q psy210 241 LLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK---NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTV 317 (915)
Q Consensus 241 l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~---~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tv 317 (915)
+.||+++||+|+|||+|||.+|||++++|||+| |++|+|+. +.++.|||++||||++||.+|.+.+ +..
T Consensus 400 ~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtL-L~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsV-------kge 471 (672)
T PRK12678 400 KKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTI-LQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSV-------KGE 471 (672)
T ss_pred ccccceeeeeecccccCCEeEEeCCCCCCHHHH-HHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhc-------cce
Confidence 999999999999999999999999999999999 78899975 7889999999999999999985433 124
Q ss_pred EEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCC-----CCCCCcCCCchhhhhhhH
Q psy210 318 VVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRR-----PPGREAFPGDVFYLHSRL 392 (915)
Q Consensus 318 vv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~-----~p~~~gyp~~~~~~~~~l 392 (915)
||++|+|+||..|++++|+||++||||+++|+||||++|||||||+||||++++.|+ +|+..+|||++|+.+|++
T Consensus 472 VVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~~~AR~ 551 (672)
T PRK12678 472 VIASTFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARN 551 (672)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHHHHHHHHhhcCCCCccCCCCchhhccCccHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HhhhhcccccccchhhhccCCCCccceeEEEEec-CCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccc
Q psy210 393 LERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL-EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVG 471 (915)
Q Consensus 393 ~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~-~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~ 471 (915)
+|+ +||||+|+||+++ +++|++||++++++++||||+|||+|+++||||||||+.|+||.+
T Consensus 552 iE~------------------gGSLTii~TvLVETGS~mDd~Ifeefkgtgn~elvLsR~LAerrifPAIDv~~S~SR~e 613 (672)
T PRK12678 552 IEN------------------GGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRKE 613 (672)
T ss_pred hcc------------------CccceeeEEEEeccCCccCcchHHHHhhccCceeeECHHHHhCCCCCccCCCcCccccc
Confidence 995 6999999999999 788999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHhhHHHHhhhhc
Q psy210 472 GAAQYKIVKKLSGDIRIMLAQYRELESFSKF 502 (915)
Q Consensus 472 ~~~~~~~~~~~a~~lr~~la~~~e~e~l~~l 502 (915)
..+..+++.+.++.||+.|+.|...+.+-.+
T Consensus 614 e~l~~~~e~~~~~~lRr~l~~~~~~~a~e~l 644 (672)
T PRK12678 614 ELLLSPDELAIVHKLRRVLSGLDSQQAIDLL 644 (672)
T ss_pred hhhCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999887766433
No 117
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=7.3e-57 Score=497.36 Aligned_cols=303 Identities=20% Similarity=0.214 Sum_probs=264.3
Q ss_pred cccccCCCcccccCccceeccccccceeEeCCCceeecCCCcccccccccc-cccCCCCCcccccCc--cccccceeeec
Q psy210 174 LKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETV-EKIAPGIMDRESVNE--PLLTGIKSIDS 250 (915)
Q Consensus 174 ~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i-~~~~~~~~~R~~~~~--~l~TGi~aiD~ 250 (915)
.-+++.|+.|.+.-+++.-.-....|-+|-...|.+.+. ...+... +-.|++|.+|..+.+ |+.||+|+||+
T Consensus 88 ~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~-----~~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvID~ 162 (416)
T PRK09376 88 RFNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEK-----ARNRPLFENLTPLYPNERLRLETGNPEDLSTRIIDL 162 (416)
T ss_pred hcCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHH-----hcCCCCcccCCCCChhhcccccCCCCcccceeeeee
Confidence 446788888877544432222222444555555543332 2222222 246889999999998 89999999999
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhhc---CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCH
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQK---NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSA 327 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~---~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~ 327 (915)
|+|||+|||.+|||++|+||||| +.+|+++. +.|++|++++||||++|+.++++.+. .++|++|+|+||
T Consensus 163 l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl-------g~vv~st~d~~~ 234 (416)
T PRK09376 163 IAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK-------GEVVASTFDEPA 234 (416)
T ss_pred ecccccCceEEEeCCCCCChhHH-HHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc-------CcEEEECCCCCH
Confidence 99999999999999999999999 56677753 46888999999999999999999996 289999999999
Q ss_pred HHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchh
Q psy210 328 AEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407 (915)
Q Consensus 328 ~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~ 407 (915)
..|+++++.+++.||||+++|+|||+++|||||||+|+||++++.||+|+ .|||+++|+.+++++|||++++.
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e~------ 307 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIEE------ 307 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCCC------
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999998753
Q ss_pred hhccCCCCccceeEEEEec-CCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHH
Q psy210 408 KIFNKNNGTLTAFPIIETL-EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486 (915)
Q Consensus 408 ~~~~~~~GSiT~~~~v~~~-~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~l 486 (915)
+||||+|+|++++ |++|+|||++++++++||||+|||+||++||||||||+.|.||.+.....++|.+.++.+
T Consensus 308 ------~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S~sR~~~~l~~~~~~~~~~~l 381 (416)
T PRK09376 308 ------GGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWIL 381 (416)
T ss_pred ------CcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhcCCCCccCccccccccccccCCHHHHHHHHHH
Confidence 7999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHhhhhc
Q psy210 487 RIMLAQYRELESFSKF 502 (915)
Q Consensus 487 r~~la~~~e~e~l~~l 502 (915)
|+.|+.|++.+.+-.+
T Consensus 382 R~~l~~~~~~e~~e~~ 397 (416)
T PRK09376 382 RKILSPMDEVEAMEFL 397 (416)
T ss_pred HHHHHccCcHHHHHHH
Confidence 9999999998776544
No 118
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=4.5e-54 Score=454.89 Aligned_cols=362 Identities=19% Similarity=0.272 Sum_probs=307.6
Q ss_pred HHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhhhhcccccee
Q psy210 512 TQLYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKVQQQIGENIV 591 (915)
Q Consensus 512 ~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~~~l~~~~v 591 (915)
.-+.+.+.+.+.|++...+...+ ...|+|+.+| +=.+|||....+++....+++ ++.+++
T Consensus 30 ~~~~K~dlifailk~~~e~g~~~---------~~~GvLeil~---------dGfGFLR~~~~~yl~~~~DiY--vSpSQI 89 (422)
T COG1158 30 SRLRKQDLIFAILKAQAEQGEEI---------FGDGVLEILP---------DGFGFLRSADSSYLPGPDDIY--VSPSQI 89 (422)
T ss_pred hhhhHHHHHHHHHHHHhhcCceE---------eeeeEEEecc---------CCcceeecCccccCCCCCceE--ECHHHH
Confidence 33556666666666653221111 1237776664 235688888888998889998 899999
Q ss_pred eeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccccccc--ccc--
Q psy210 592 RTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNN--ILE-- 667 (915)
Q Consensus 592 ~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~~~e--~l~-- 667 (915)
+.+ +|+.||.|.+.-++++-.-...-|=+|--++|.+.+ ...++.++...+|.+++++...| +-.
T Consensus 90 Rrf------~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe-----~~~~R~~F~~LTPlyP~erl~LE~~~~~~~ 158 (422)
T COG1158 90 RRF------NLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPE-----KAKNRVLFENLTPLYPNERLKLERENGSTD 158 (422)
T ss_pred hhc------cCccCCEEeeeecCCCcccceeeeEEEeecCCCCHH-----HhhccCCcccCCCCCCcceeeeecCCCccc
Confidence 876 699999999988887766666666688888887765 34577889999999999887766 222
Q ss_pred ccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE-EecCCCchHHHHHHHhhhcCccccEEEEE
Q psy210 668 TGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI-GVGERSREGNDFYHEMKESNVLDKVSLIY 746 (915)
Q Consensus 668 TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~-~iGer~~ev~e~~~~~~~~~~~~~~~vv~ 746 (915)
-.-|+||++.|||||||.+|+|||.+|||+||++||+++..||+++.+++ ||+||++||+|+.+.+ +..||+
T Consensus 159 ls~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV-------~geVia 231 (422)
T COG1158 159 LSTRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSV-------KGEVVA 231 (422)
T ss_pred chhHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhh-------cceEEe
Confidence 23399999999999999999999999999999999999999999998887 8999999999999998 467999
Q ss_pred EcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcC-C
Q psy210 747 GQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISS-T 825 (915)
Q Consensus 747 ~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~-~ 825 (915)
||+|+||..|++++++.++.|+++.++|+||++++||+||+|+|||-+...+|+..+..--| ..+....+|+..|.+ +
T Consensus 232 STFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsGGvD~-nAL~~PKrFFGAARNIE 310 (422)
T COG1158 232 STFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDA-NALHRPKRFFGAARNIE 310 (422)
T ss_pred ecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCCCCeecCCcCh-hhhcCchhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999985444 455567888887776 5
Q ss_pred CCCceeEEEEEEecCCCCCCCccccccccc-CcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHHHHH
Q psy210 826 KNGTITSVQAIYVPADDLTDPSPSTTFTHL-DSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYL 904 (915)
Q Consensus 826 ~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~-dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r~~l 904 (915)
+|||+|+++|.++++|+.+|.|..+.|.-| +..++|||+||++++|||||+.+|.+|.. ..++++++.+..|.+|++|
T Consensus 311 eGGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKE-eLLl~~~~l~k~w~lRr~l 389 (422)
T COG1158 311 EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKE-ELLLSPDELQKMWVLRRIL 389 (422)
T ss_pred cCcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchH-hhcCCHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999 88999999999999999999999999997 4789999999999999999
Q ss_pred HccHhhhhc
Q psy210 905 QKYKELKDT 913 (915)
Q Consensus 905 ~~~~e~~~~ 913 (915)
+...+.+.+
T Consensus 390 ~~md~~~a~ 398 (422)
T COG1158 390 SPMDEIDAI 398 (422)
T ss_pred cCCChHHHH
Confidence 987666543
No 119
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=8.8e-51 Score=434.16 Aligned_cols=236 Identities=22% Similarity=0.302 Sum_probs=221.7
Q ss_pred cceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEE-EEecCCCchHHHHHHHhhhcCccccEEEEEE
Q psy210 669 GIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVF-IGVGERSREGNDFYHEMKESNVLDKVSLIYG 747 (915)
Q Consensus 669 Gir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~-~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~ 747 (915)
..|+||+|+|+|+|||++|||++|+|||||+.+++++...++.+++++ ++||||++|+.+|++.+ ++++|++
T Consensus 3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I-------~~~~v~~ 75 (249)
T cd01128 3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV-------KGEVIAS 75 (249)
T ss_pred chhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh-------ccEEEEe
Confidence 359999999999999999999999999999999999876655566655 57999999999999998 7789999
Q ss_pred cCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCC-C
Q psy210 748 QMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST-K 826 (915)
Q Consensus 748 t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~-~ 826 (915)
++|+|+..|+++++.++++||||+++|++|++++|++||||+|+||+++..|++| .+||||++|+.+++++|||++. +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~~~Ar~~~~ 154 (249)
T cd01128 76 TFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFFGAARNIEE 154 (249)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 6899999999999999999985 7
Q ss_pred CCceeEEEEEEec-CCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHHHHHH
Q psy210 827 NGTITSVQAIYVP-ADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQ 905 (915)
Q Consensus 827 ~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r~~l~ 905 (915)
+||||++||++++ ++|..||+.++..++.||||+|||+|++.|+||||||+.|.||.+ +.+++++|++.++++|++|+
T Consensus 155 ~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~-~ll~~~~~~~~~~~~r~~~~ 233 (249)
T cd01128 155 GGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKE-ELLLDPEELQRMWLLRRVLS 233 (249)
T ss_pred CCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccc-hhhCCHHHHHHHHHHHHHHH
Confidence 9999999999999 566667999999999999999999999999999999999999987 57889999999999999999
Q ss_pred ccHhhhhc
Q psy210 906 KYKELKDT 913 (915)
Q Consensus 906 ~~~e~~~~ 913 (915)
.|+|+|++
T Consensus 234 ~~~~~~~~ 241 (249)
T cd01128 234 DMDPIEAM 241 (249)
T ss_pred ccChHHHH
Confidence 99999986
No 120
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=1.2e-50 Score=450.53 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=227.5
Q ss_pred cccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhh---cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceE
Q psy210 240 PLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ---KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYT 316 (915)
Q Consensus 240 ~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~---~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t 316 (915)
+-..|+|+||.++|||+|||++|+|++|+|||+| +.+|.+. ++.++.|+++++|+|++|+.+|++.+. .
T Consensus 151 ~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL-~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIl-------g 222 (415)
T TIGR00767 151 TEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVL-LQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVK-------G 222 (415)
T ss_pred ccccceeeeeeEEEeCCCCEEEEECCCCCChhHH-HHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhh-------c
Confidence 4567999999999999999999999999999999 6777774 346778999999999999999999984 4
Q ss_pred EEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhh
Q psy210 317 VVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERS 396 (915)
Q Consensus 317 vvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERa 396 (915)
.+|++++++|+..|..+++.+++.||||+++|+||+|++|++||||+|+||++++.||||+ +|||+++|+.+++++|||
T Consensus 223 ~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~~~~~~~~~~~~~~~a 301 (415)
T TIGR00767 223 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLS-GGVDANALHRPKRFFGAA 301 (415)
T ss_pred eEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCcChhhhcccHHHHhhc
Confidence 8999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hcccccccchhhhccCCCCccceeEEEEec-CCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccc
Q psy210 397 SKINKYFLEKKKIFNKNNGTLTAFPIIETL-EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ 475 (915)
Q Consensus 397 g~~~~~~g~~~~~~~~~~GSiT~~~~v~~~-~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~ 475 (915)
|+++. +||||+|+||+++ |++|+|||++++++++||||+|||+||++|||||||++.|.||.+....
T Consensus 302 ~~~~~------------~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~~~l~ 369 (415)
T TIGR00767 302 RNIEE------------GGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEELLL 369 (415)
T ss_pred CCCCC------------CcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccchhhcC
Confidence 98753 7999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhHHHHhhhhc
Q psy210 476 YKIVKKLSGDIRIMLAQYRELESFSKF 502 (915)
Q Consensus 476 ~~~~~~~a~~lr~~la~~~e~e~l~~l 502 (915)
+++|.+.++.+|+.|+.|.+.+.+-.+
T Consensus 370 ~~~~~~~~~~~r~~l~~~~~~~~~~~~ 396 (415)
T TIGR00767 370 TPEELQKIWVLRKIISPMDSIEAMEFL 396 (415)
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999999999988766433
No 121
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.4e-52 Score=464.30 Aligned_cols=259 Identities=35% Similarity=0.507 Sum_probs=215.5
Q ss_pred ccccccceeeccCcccccChhhhhhcCCCCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeeecce
Q psy210 42 ENSLLNKTFLITGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFA 121 (915)
Q Consensus 42 ~~~l~~~mIig~g~~~~~si~~k~~~~~~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~r~g 121 (915)
.+.+++++|-|+||||||||||||+||+||++|||||||||++++++|+||||||||+++|.+|+|+|||||||+|+|||
T Consensus 258 rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rpg 337 (621)
T COG0445 258 RSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRPG 337 (621)
T ss_pred hCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeeccc
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
|++|||||+|++|.++||+|..+|+|+|||||||+||+||++||++|+++.+..-. . .+|+.+.+.++|+|.
T Consensus 338 YAIEYD~v~p~qL~~tLEtK~I~GLf~AGQINGTtGYEEAAaQGliAGiNAal~~~-~-------~~p~il~R~eaYIGV 409 (621)
T COG0445 338 YAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQ-G-------KEPFILRRDEAYIGV 409 (621)
T ss_pred eeeeecccChhhcccchhhceecceEEcccccCCchhHHHHhhhHHHHHHHHHHhc-C-------CCCcccccCcceeee
Confidence 99999999999999999999999999999999999999999999999996553222 1 357888999999999
Q ss_pred EeCCCceeecCCCccccc--ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHH
Q psy210 202 IVNSKGEFIDNKKKFLIK--NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTII 279 (915)
Q Consensus 202 viD~lG~PiD~~~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~ 279 (915)
++|+|- .++..+|| ++++.|+ ++..|++ +|+.+|+++|+ .+|++++..
T Consensus 410 lIDDLv----TkGt~EPYRmfTSRAEy---RL~LR~D---------NAd~RLt~~g~--~lGLv~~~r------------ 459 (621)
T COG0445 410 LIDDLV----TKGTNEPYRMFTSRAEY---RLLLRED---------NADLRLTEIGR--ELGLVDDER------------ 459 (621)
T ss_pred Eehhhh----cCCCCCchhhcchHHHH---HHHhhcc---------chhhhhhHHHH--HhCCCCHHH------------
Confidence 999997 67778887 6888998 9999999 99999999986 344877644
Q ss_pred hhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhh-----hhhhhhhhHHHHHhcCCcEEEE
Q psy210 280 NQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYI-----SPYTGCTIGEYFRDLGQDCLII 354 (915)
Q Consensus 280 ~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~-----~~~~a~tiAEy~r~~g~~Vlv~ 354 (915)
|..+-++.+.+.+.++.|++..+ . + + ....... -.-.+.+..+.|+++..+
T Consensus 460 ----------~~~f~~k~~~i~~~~~~L~~~~v-------~-p-~-~~~~~~~~~~~~~~~~~~~~~~lL~rpe~~---- 515 (621)
T COG0445 460 ----------YERFLKKKENIEEEIERLKSTWV-------T-P-S-EVAKELLALGGQPLKRRSSLYDLLRRPEIS---- 515 (621)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHheec-------C-h-H-HHHHHHHHhhcCCcccchhHHHHhcCCCCC----
Confidence 44555666667777777754321 1 1 0 0111110 122356778899999888
Q ss_pred eccchhHH
Q psy210 355 YDDLTKHA 362 (915)
Q Consensus 355 ~Ddltr~a 362 (915)
||+|..+.
T Consensus 516 ~~~l~~~~ 523 (621)
T COG0445 516 YDDLISLF 523 (621)
T ss_pred HHHHHHhC
Confidence 77776553
No 122
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=100.00 E-value=1.1e-49 Score=466.37 Aligned_cols=257 Identities=33% Similarity=0.484 Sum_probs=214.4
Q ss_pred cccccceeeccCcccccChhhhhhcCCCCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeeeccee
Q psy210 43 NSLLNKTFLITGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFAY 122 (915)
Q Consensus 43 ~~l~~~mIig~g~~~~~si~~k~~~~~~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~r~g~ 122 (915)
..++...|.|+||||||||||||+||++|++|||||||||+++++||+|||||+|||++|+++||+|||||||+|+||||
T Consensus 259 s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~h~v~lepeg~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r~gy 338 (618)
T PRK05192 259 SPMYSGVIEGVGPRYCPSIEDKIVRFADKDRHQIFLEPEGLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRPGY 338 (618)
T ss_pred ccCcCcccCCCCCCCCCCHHHHhhhcCCCCCceEEEecCCCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEeeccc
Confidence 34788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeE
Q psy210 123 NIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRI 202 (915)
Q Consensus 123 ~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrv 202 (915)
+||||||||++|+++||+|..+|+|+|||||||+||+||++||++|+++.+.... .+|+.+++.++|+|.+
T Consensus 339 ~ieyd~i~p~~L~~~Le~k~~~~lf~AGQinGt~GYeEaaaqGl~AgiNaa~~~~---------~~~~~~~r~~~yiGvl 409 (618)
T PRK05192 339 AIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQ---------GEPFILKRSEAYIGVL 409 (618)
T ss_pred ceeecccChhhcchhheecCCCCeEECcccCCChHHHHHHHHHHHHHHHHHHHhc---------CCCCCCCcchhhHHHH
Confidence 9999999999999999999999999999999999999999999999997654432 3589999999999999
Q ss_pred eCCCceeecCCCccccc--ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 203 VNSKGEFIDNKKKFLIK--NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 203 iD~lG~PiD~~~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
+|++- .++..+|| ++++.|+ ++..|++ +|+.+|+++|+ ++|++++..
T Consensus 410 iddlv----tkg~~EPYRmfTSRaEy---Rl~lR~D---------Nad~RLt~~g~--~~gl~~~~~------------- 458 (618)
T PRK05192 410 IDDLV----TKGTKEPYRMFTSRAEY---RLLLRED---------NADLRLTEKGY--ELGLVDDER------------- 458 (618)
T ss_pred HHHHH----hcCCCcchhhcchhhHH---HHHhccc---------cHHhHhHHHHH--HhCCCCHHH-------------
Confidence 99996 67777887 6888898 9999999 99999999887 455877644
Q ss_pred hcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchh
Q psy210 281 QKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTK 360 (915)
Q Consensus 281 ~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr 360 (915)
|..+-++.+.+.+.++.|++..+-...+ +....+ .....++..|.+++++.+ +++|..
T Consensus 459 ---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~------~~~~~~~~~~~l~~p~~~----~~~l~~ 516 (618)
T PRK05192 459 ---------WARFEEKKEAIEEEIERLKSTRVTPDEL---NELGGD------PLKREVSLLDLLRRPEIT----YEDLAK 516 (618)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHccccCHHHH---HhhcCC------cccCCCcHHHHhCCCCCC----HHHHHh
Confidence 3344456677777777776644321000 000011 112346888999988888 666654
Q ss_pred H
Q psy210 361 H 361 (915)
Q Consensus 361 ~ 361 (915)
+
T Consensus 517 ~ 517 (618)
T PRK05192 517 L 517 (618)
T ss_pred h
Confidence 4
No 123
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=1.8e-46 Score=401.04 Aligned_cols=238 Identities=20% Similarity=0.240 Sum_probs=222.9
Q ss_pred ceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcC---CCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEe
Q psy210 245 IKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN---KNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAA 321 (915)
Q Consensus 245 i~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~---~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~ 321 (915)
.|+||+|+|+|+|||++|+|++|+||||| +.+|.++.. .+++|+++.+|+|++++.+|++.+ ++++|++
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I-------~~~~v~~ 75 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTL-LQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV-------KGEVIAS 75 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHH-HHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh-------ccEEEEe
Confidence 58999999999999999999999999999 688887643 367778888999999999999998 5799999
Q ss_pred cCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccc
Q psy210 322 TAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINK 401 (915)
Q Consensus 322 ~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~ 401 (915)
++++|+..|+++++.+++.||||+++|++|++++|+++||++|+||+++..|++| ..|||+++|+.+++++|||+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~~~Ar~~~~ 154 (249)
T cd01128 76 TFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFFGAARNIEE 154 (249)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 689999999999999999998632
Q ss_pred cccchhhhccCCCCccceeEEEEec-CCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHH
Q psy210 402 YFLEKKKIFNKNNGTLTAFPIIETL-EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVK 480 (915)
Q Consensus 402 ~~g~~~~~~~~~~GSiT~~~~v~~~-~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~ 480 (915)
+||||++||++++ ++++.||+.+++++++||||+|||+|+..|+||||||+.|.||.+...+.+.|.
T Consensus 155 ------------~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~~~~~~ 222 (249)
T cd01128 155 ------------GGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDPEEL 222 (249)
T ss_pred ------------CCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhCCHHHH
Confidence 7999999999999 677888999999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHHHHHhhHHHHhhhhcc
Q psy210 481 KLSGDIRIMLAQYRELESFSKFS 503 (915)
Q Consensus 481 ~~a~~lr~~la~~~e~e~l~~lG 503 (915)
+.+.++|+.++.|++++++..+-
T Consensus 223 ~~~~~~r~~~~~~~~~~~~~~~~ 245 (249)
T cd01128 223 QRMWLLRRVLSDMDPIEAMEFLL 245 (249)
T ss_pred HHHHHHHHHHHccChHHHHHHHH
Confidence 99999999999999999987653
No 124
>KOG1353|consensus
Probab=100.00 E-value=6.5e-47 Score=385.89 Aligned_cols=270 Identities=49% Similarity=0.768 Sum_probs=254.2
Q ss_pred hcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCcccc
Q psy210 163 AQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLL 242 (915)
Q Consensus 163 a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~ 242 (915)
.+.+++.+|+....++.|+.|..|+....+|+++.++||++|.+|+|+|+++++...+++ +..|..+.+|++
T Consensus 61 ~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmq 132 (340)
T KOG1353|consen 61 GENVGVVVFGEDSLIKEGDTVKRTAAISDVPPLKALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQ 132 (340)
T ss_pred CCceEEEEEcCcceeccCceEEeeeeeeccCchHHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhh
Confidence 344577789999999999999999999999999999999999999999999988765432 788999999999
Q ss_pred ccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcC--------CCeEEEEEeeccchhhHHHHHHHHhccCCcc
Q psy210 243 TGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN--------KNVICIYVCIGQKISSLINVINKLKYYNCMD 314 (915)
Q Consensus 243 TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~--------~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~ 314 (915)
||++|+|++.|||||||.+|+|++++|||.|+.++|.||+. ..++|||++||++.+.|..++++|.+.++|+
T Consensus 133 tg~KAvdslVpigRgqrELiIgdRqTGkTsla~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~ 212 (340)
T KOG1353|consen 133 TGLKAVDSLVPIGRGQRELIIGDRQTGKTSLAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAME 212 (340)
T ss_pred hhhhHhhceeeeccCceEEEeccccCCceeeeehhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHhcCCce
Confidence 99999999999999999999999999999999999999852 2589999999999999999999999999999
Q ss_pred eEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHh
Q psy210 315 YTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLE 394 (915)
Q Consensus 315 ~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~E 394 (915)
+|++|+++++
T Consensus 213 y~ivv~atas---------------------------------------------------------------------- 222 (340)
T KOG1353|consen 213 YSIVVAATAS---------------------------------------------------------------------- 222 (340)
T ss_pred EEEEEEeecc----------------------------------------------------------------------
Confidence 9999999987
Q ss_pred hhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccccccc
Q psy210 395 RSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA 474 (915)
Q Consensus 395 Rag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~ 474 (915)
+++|++.+||+|++|| ||||+|..+||.+|+.||||+..|+||+++.+
T Consensus 223 -------------------------------q~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaa 270 (340)
T KOG1353|consen 223 -------------------------------QAGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAA 270 (340)
T ss_pred -------------------------------cccceeeecccceeee-cchhHHHHHHHHhccchhheeeeEeeeccchH
Confidence 2457889999999999 99999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHHHHhhcCCCCCccHHHHHHHHH
Q psy210 475 QYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVELIIILL 542 (915)
Q Consensus 475 ~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ 542 (915)
|.+.++++++.+|..|++|+|+..|++||++||..+++.|.++.++.++|+|+++.|...|+++..+|
T Consensus 271 q~kamkqvag~~klelaq~revaafaqfgsdlda~tq~~l~rg~rltellkq~qy~p~~~e~qv~~iy 338 (340)
T KOG1353|consen 271 QTKAMKQVAGSLKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYAPLAIEEQVAVIY 338 (340)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccHHHHHHHHhhhHHHHHHhcCCCCCcchhhheeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999987665
No 125
>KOG2311|consensus
Probab=100.00 E-value=2.7e-45 Score=401.78 Aligned_cols=178 Identities=39% Similarity=0.603 Sum_probs=165.5
Q ss_pred CcccccChhhhhhcCCCCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeeecceeEEEEeecChhh
Q psy210 54 GPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFAYNIEYDYFDPRC 133 (915)
Q Consensus 54 g~~~~~si~~k~~~~~~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~r~g~~~~~~~~~p~~ 133 (915)
|||||||||+||+|||+| +|+|||||||+++++||+||||++||++.|.+++|.||||||++|+||||+++|||+||++
T Consensus 300 gPRYCPSiEsKilRFp~k-~HqiwLEpEGlDs~~iYpqG~S~tlpee~Q~~lir~IpGLEn~~i~qP~YgVeYDyv~prQ 378 (679)
T KOG2311|consen 300 GPRYCPSIESKILRFPDK-SHQIWLEPEGLDSDLIYPQGLSNTLPEELQLQLIRSIPGLENAEILQPGYGVEYDYVDPRQ 378 (679)
T ss_pred CCccCCcHHHHHhcCccc-cceeeecCcCCCCCcccccccccCCCHHHHHHHHHhccCcccceeecccccceecccChHH
Confidence 999999999999999997 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceeecCC
Q psy210 134 LNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNK 213 (915)
Q Consensus 134 L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~ 213 (915)
|.++||+|..+|+|||||||||+||+||||||++|+++.+.+.. -.+++.+++.++|+|.+||++- .+
T Consensus 379 lk~sLeTkkV~GLF~AGQINGTTGYEEAAAQGIiAGiNA~~~a~--------~~~~~~v~Rte~yIGvLIDDL~----t~ 446 (679)
T KOG2311|consen 379 LKPSLETKKVQGLFFAGQINGTTGYEEAAAQGIIAGINASLRAS--------GKPPVVVSRTEGYIGVLIDDLT----TL 446 (679)
T ss_pred cchhhhhhhccceEEeeeecCccchHHHHhhhhHhhhhhhhhhc--------CCCCeeeecccceeEEEehhhh----cc
Confidence 99999999999999999999999999999999999987663332 1468899999999999999986 56
Q ss_pred Cccccc--ccccccccCCCCCcccccCccccccceeeeccccccc
Q psy210 214 KKFLIK--NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGK 256 (915)
Q Consensus 214 ~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigr 256 (915)
+..+|| ++++.+. ++..|.+ +|.-+|+|+|+
T Consensus 447 g~~EPYRMfTSRsEf---RLslR~D---------NAD~RLT~lg~ 479 (679)
T KOG2311|consen 447 GTNEPYRMFTSRSEF---RLSLRPD---------NADSRLTPLGY 479 (679)
T ss_pred CCccchhhhcchhhh---eeeecCC---------ccccccccchh
Confidence 667776 5777787 8999999 99999999997
No 126
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=100.00 E-value=3.3e-42 Score=402.73 Aligned_cols=220 Identities=38% Similarity=0.576 Sum_probs=194.0
Q ss_pred cccccceeeccCcccccChhhhhhcCCCCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeeeccee
Q psy210 43 NSLLNKTFLITGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFAY 122 (915)
Q Consensus 43 ~~l~~~mIig~g~~~~~si~~k~~~~~~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~r~g~ 122 (915)
..++...|.|+|||||||||+|++||++|++|++||||||++++++|+|||||+|||++|++++|+||||||++|+||||
T Consensus 257 s~~~~g~i~~~GpRYCpsIe~k~~~f~~~~~h~v~lepe~~~~~~~~~~G~st~lp~~~q~~i~~~ipGle~a~~~r~gy 336 (617)
T TIGR00136 257 SPMYSGVIEGNGPRYCPSIEDKVVRFADKERHQIFLEPEGLNSDEIYPNGLSTSLPEDVQLQIVRSIPGLENAEILRPGY 336 (617)
T ss_pred ccccCcccCCCCCCCCCCHHHHHhhcCCCCCceEEEeecCCCCCeEEecCeecCCCHHHHHHHHHcCcCcccceEecccc
Confidence 44788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeE
Q psy210 123 NIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRI 202 (915)
Q Consensus 123 ~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrv 202 (915)
+|||||+||++|+++||+|..+|+|+||||+||+||+||++||++|+++.+.... . .+|+.+++.++|+|.+
T Consensus 337 ~~e~~~i~p~~l~~~le~k~~~gLf~AGqi~Gt~Gy~eAaa~Gl~Ag~naa~~~~-~-------~~~~~l~r~~~yiGvl 408 (617)
T TIGR00136 337 AIEYDFFDPRQLKPTLETKLIQGLFFAGQINGTTGYEEAAAQGLMAGINAALKLQ-N-------KEPFILKRSEAYIGVL 408 (617)
T ss_pred ceEEeEEChhhCchhheeCCCCCeEEccccCCcchHHHHHHHHHHHHHHHHHHhc-C-------CCCCCCCcccchHhHH
Confidence 9999999999999999999999999999999999999999999999996654433 1 3578889999999999
Q ss_pred eCCCceeecCCCccccc--ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 203 VNSKGEFIDNKKKFLIK--NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 203 iD~lG~PiD~~~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
+|++- .++..+|| ++++.|+ ++..|.+ +|+.+|+++|+ ++|++++..
T Consensus 409 iddlv----tkg~~EPYRmfTSRaE~---Rl~lR~d---------NAd~RL~~~g~--~~gl~~~~~------------- 457 (617)
T TIGR00136 409 IDDLV----TKGTKEPYRMFTSRAEY---RLLLRED---------NADFRLTEIGR--ELGLIDDER------------- 457 (617)
T ss_pred HHHHH----hcCCCcchhhccchhHH---HHHhccc---------cHHHHHHHHHH--HhCCCCHHH-------------
Confidence 99986 67777887 6888888 9999999 99999999887 455776544
Q ss_pred hcCCCeEEEEEeeccchhhHHHHHHHHhcc
Q psy210 281 QKNKNVICIYVCIGQKISSLINVINKLKYY 310 (915)
Q Consensus 281 ~~~~~~~~V~~~iGer~~ev~~~~~~l~~~ 310 (915)
|..+-++.+.+.+.++.|++.
T Consensus 458 ---------~~~~~~~~~~~~~~~~~l~~~ 478 (617)
T TIGR00136 458 ---------YARFLKKKENIEEEIQRLKST 478 (617)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhcC
Confidence 223445566677777777654
No 127
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=100.00 E-value=1.9e-40 Score=376.77 Aligned_cols=142 Identities=22% Similarity=0.342 Sum_probs=133.2
Q ss_pred ccChhh------hhhcCCC-C------------CcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeee
Q psy210 58 CPSIED------KIYKFPN-T------------KNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSII 118 (915)
Q Consensus 58 ~~si~~------k~~~~~~-~------------~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~ 118 (915)
|||||+ |++||++ | ++|+|||||||+++++||+|||||+|||++|+|+||+|||||||+|+
T Consensus 224 C~~iE~~a~~g~k~~rf~~~kp~gl~~p~~~~~~~~~v~l~~e~~~~~~~~~~G~~t~l~~~~Q~~~~r~ipgle~a~~~ 303 (433)
T TIGR00137 224 CLPIEEMAQRGEKTMLFGPMKPVGLFDPRTGKKPYAVVQLRQEDKAGTLWNMVGFQTNLRWGEQKRVFRLIPGLENAEFV 303 (433)
T ss_pred CCCHHHHhhcCCceEecCCCCccCCCCCCCCCCCceEEEEeccccCCCEEecccccCCCCHHHHHHHHhcCcCccceEEe
Confidence 999999 9999998 6 99999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeecC-hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccc
Q psy210 119 RFAYNIEYDYFD-PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFE 197 (915)
Q Consensus 119 r~g~~~~~~~~~-p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~ 197 (915)
|||||||||||| |++|+++||+|..+|+||||||||||||+||++||++|+++.+.... |+++.+++.++
T Consensus 304 r~g~~~~~~~i~~p~~L~~~l~~k~~~~lf~AGQi~G~~GY~Eaaa~Gl~agina~~~~~---------~~~~~~~~~~~ 374 (433)
T TIGR00137 304 RMGVMHRNTFINSPQLLTASLHFKDRQTLFFAGQLTGVEGYVASTAGGWLAGINAARLAL---------GEPLLTLPAET 374 (433)
T ss_pred ecceEEeeeeeCCHHHhhHHhccCCCCCEEECcccccchHHHHHHHHHHHHHHHHHHHHc---------CCCCCCCCCcc
Confidence 999999999999 79999999999999999999999999999999999999997665444 45555666999
Q ss_pred cceeEeCCCce
Q psy210 198 LLGRIVNSKGE 208 (915)
Q Consensus 198 lLGrviD~lG~ 208 (915)
|+|.++|++-.
T Consensus 375 ~iG~l~~~l~~ 385 (433)
T TIGR00137 375 MMGALFNYIST 385 (433)
T ss_pred hHHHHHHHHhc
Confidence 99999999954
No 128
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=100.00 E-value=8.3e-40 Score=366.26 Aligned_cols=140 Identities=46% Similarity=0.728 Sum_probs=117.4
Q ss_pred hccCccccc-ccccceeeccCcccccChhhhhhcCCCCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCcc
Q psy210 35 ISRQPELEN-SLLNKTFLITGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLN 113 (915)
Q Consensus 35 ~aRqPe~~~-~l~~~mIig~g~~~~~si~~k~~~~~~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~ 113 (915)
+.|.-+-.+ .+|...|-++|||||||||+|++||++|++|+|||||||+++++||+|||||+|||++|+++||+|||||
T Consensus 246 ~i~~~~~~s~~~~~g~ie~~gpRycpsie~K~v~f~~~~~h~v~Lepe~~~~~~~y~~G~stslp~~~Q~~~~r~IpGLe 325 (392)
T PF01134_consen 246 IIRDNLHRSPDLFEGCIEGIGPRYCPSIEDKPVRFPDRPYHQVFLEPEGLNTNEYYPNGFSTSLPWDVQKRIFRSIPGLE 325 (392)
T ss_dssp HHHHTCCG-T-T-TT-CHHCHCCCTTCHHHHHTTSTSTSSEEEEEEESSTTS-EEEEETS-CSS-HHHHHHHHTTSTTTT
T ss_pred HHHhccccCcceecceeEEeccCCccchhcccccccCCCCEEEEEEecCCCCceEEecCCcCCCCHHHHHHHhhcCCChh
Confidence 333334443 3788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecceeEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhcccc
Q psy210 114 YSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDL 174 (915)
Q Consensus 114 ~a~~~r~g~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~ 174 (915)
||+|+||||+||||||||.+|..+||+|..+|+|+||||+||+||+||++||++|+++...
T Consensus 326 ~a~~~r~Gy~~ey~~v~~~~l~~~l~~k~~~~lf~AGqi~G~~Gy~eaaa~G~~ag~na~~ 386 (392)
T PF01134_consen 326 NAEILRPGYAHEYDFVDPPQLLNTLETKKIPGLFFAGQINGTEGYEEAAAQGLIAGINAAR 386 (392)
T ss_dssp T--EEE--EEEEEEEE-GGGBBTTSBBSSSBTEEE-GGGGTB-SHHHHHHHHHHHHHHHHH
T ss_pred cChhhheEEeeeeeEEehhhcccceEECCCCCceECCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986543
No 129
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=5.2e-37 Score=325.45 Aligned_cols=233 Identities=21% Similarity=0.282 Sum_probs=209.6
Q ss_pred eeeeccccccccceeeeecCCCCChhHHHHHHHHhh---cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEec
Q psy210 246 KSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ---KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAAT 322 (915)
Q Consensus 246 ~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~---~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~ 322 (915)
|+||.+.|||+|||.+|++++.+|||+| |+.|+|. +++++..+..+|.||++||+++.+..+ ..||++|
T Consensus 162 RviDL~~PIGkGQR~LIVAPPkaGKT~l-Lq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~-------geViaST 233 (422)
T COG1158 162 RVIDLISPIGKGQRGLIVAPPKAGKTTL-LQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVK-------GEVVAST 233 (422)
T ss_pred HHHhhhcccCCCceeeEecCCCCCchHH-HHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhhc-------ceEEeec
Confidence 7899999999999999999999999999 8999984 688999999999999999999999884 6899999
Q ss_pred CCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhccccc
Q psy210 323 AADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKY 402 (915)
Q Consensus 323 a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~ 402 (915)
.|+||..++..+.+.+.-|..+.++|+||++++||+||+|+||+-+.-..|+..+. |..+..++..-|.+--|.++
T Consensus 234 FDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsG-GvD~nAL~~PKrFFGAARNI--- 309 (422)
T COG1158 234 FDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSG-GVDANALHRPKRFFGAARNI--- 309 (422)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCCCCeecC-CcChhhhcCchhhhhhhhcc---
Confidence 99999999999999999999999999999999999999999999999888888763 66655555555555555555
Q ss_pred ccchhhhccCCCCccceeEEEEecCCC-CCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHH
Q psy210 403 FLEKKKIFNKNNGTLTAFPIIETLEGD-VTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKK 481 (915)
Q Consensus 403 ~g~~~~~~~~~~GSiT~~~~v~~~~~d-~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~ 481 (915)
+.|||+|+++|.+++.|. |++.|.++++++.+..++|||+|+++++|||||+.+|.+|-..-...+++.+
T Consensus 310 ---------EeGGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLLl~~~~l~ 380 (422)
T COG1158 310 ---------EEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSPDELQ 380 (422)
T ss_pred ---------ccCcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhcCCHHHHH
Confidence 449999999999999765 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHhh
Q psy210 482 LSGDIRIMLAQYRELESF 499 (915)
Q Consensus 482 ~a~~lr~~la~~~e~e~l 499 (915)
-.+.||+.++...+.+.+
T Consensus 381 k~w~lRr~l~~md~~~a~ 398 (422)
T COG1158 381 KMWVLRRILSPMDEIDAI 398 (422)
T ss_pred HHHHHHHHhcCCChHHHH
Confidence 999999998875554443
No 130
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=100.00 E-value=6.5e-37 Score=345.65 Aligned_cols=143 Identities=27% Similarity=0.360 Sum_probs=133.4
Q ss_pred ccChhhhhhcCCCCCcc-------------------eeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeee
Q psy210 58 CPSIEDKIYKFPNTKNH-------------------QIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSII 118 (915)
Q Consensus 58 ~~si~~k~~~~~~~~~~-------------------~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~ 118 (915)
|||||+|++||+++.+| +|||||||+++++||+|||||+|||++|+|+||+|||||||+|+
T Consensus 225 C~~iE~~a~r~~~~~~~gp~kpvgl~~p~~~~~~~a~v~L~~e~~~~~~~~~~Gfqt~l~~~~Q~~~~r~Ipgle~a~~~ 304 (436)
T PRK05335 225 CMPIEVMAERGRETLRFGPMKPVGLTDPRTGKRPYAVVQLRQDNAAGTLYNIVGFQTKLKWGEQKRVFRMIPGLENAEFV 304 (436)
T ss_pred CCCHHHHHhhcccccccCCCCcccccCcccCCCcceEEEEecCCCCCCeEecccccCCCCHHHHHHHHhcccchhceEEE
Confidence 99999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeecC-hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccc
Q psy210 119 RFAYNIEYDYFD-PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFE 197 (915)
Q Consensus 119 r~g~~~~~~~~~-p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~ 197 (915)
|||||||||||| |.+|+++|++|..+|+||||||+||+||+||+++|++|+++...... |+++.+++.++
T Consensus 305 r~G~~~~~~~i~~p~~l~~~l~~k~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~~---------g~~~~~~~~~~ 375 (436)
T PRK05335 305 RYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYVESAASGLLAGINAARLAL---------GKEPVIPPPTT 375 (436)
T ss_pred eceEEeeccccCChhhCchhccccCCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHhc---------CCCCCCCCccC
Confidence 999999999999 99999999999999999999999999999999999999987654433 55666667777
Q ss_pred cceeEeCCCcee
Q psy210 198 LLGRIVNSKGEF 209 (915)
Q Consensus 198 lLGrviD~lG~P 209 (915)
++|.++|++-++
T Consensus 376 ~iG~l~~~l~~~ 387 (436)
T PRK05335 376 ALGALLNYITGA 387 (436)
T ss_pred cHHHHHHHHhcC
Confidence 899999999654
No 131
>KOG1353|consensus
Probab=100.00 E-value=1.7e-34 Score=295.20 Aligned_cols=254 Identities=22% Similarity=0.329 Sum_probs=232.2
Q ss_pred ccccchhhHHHHHHHHHHHHhhhcccccchhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEE
Q psy210 549 FFKIPIKQIELFEINIIKYFRIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRIL 628 (915)
Q Consensus 549 Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~ 628 (915)
|+++..+|+.+|.+.+. .+..++..+.+....|++..-++.|+.|..|+....+|+++.++|||.
T Consensus 37 L~nvQAeEmvEFssGlK---------------gmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg~~Llgrvv 101 (340)
T KOG1353|consen 37 LTNVQAEEMVEFSSGLK---------------GMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPLKALLGRVG 101 (340)
T ss_pred ccccchHHHHhhhcccc---------------chhccccCCceEEEEEcCcceeccCceEEeeeeeeccCchHHHhhhhh
Confidence 57778888888887755 478889999999999999999999999999999999999999999999
Q ss_pred cccCccCCCCCCCCCCCCCccCCCCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 629 NVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 629 d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
|++|+|+|+++++...+++ ...|....||.+||++++|++.|||||||.+|.|++.+|||.|..+.+.|++.
T Consensus 102 dAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla~dTI~nqk~ 173 (340)
T KOG1353|consen 102 CALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLAIDTILNQKR 173 (340)
T ss_pred hhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCceeeeehhhhhhhh
Confidence 9999999999988765543 56788999999999999999999999999999999999999999999998875
Q ss_pred cCC-------cEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEe
Q psy210 709 EHK-------GCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFI 781 (915)
Q Consensus 709 ~~~-------~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~ 781 (915)
.+. -.|||+.||++...|..+++.+.+.++|++|++|++|++
T Consensus 174 ~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~y~ivv~atas------------------------------- 222 (340)
T KOG1353|consen 174 GNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAMEYSIVVAATAS------------------------------- 222 (340)
T ss_pred hcccccccceEEEEEEecccchhHHHHHHHHHHhcCCceEEEEEEeecc-------------------------------
Confidence 432 259999999999999999999999999999999999987
Q ss_pred cchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEe
Q psy210 782 DNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVL 861 (915)
Q Consensus 782 Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivL 861 (915)
.++|.+.+||.++.|| ||||+|
T Consensus 223 ---------------------------------------------------------q~gdvsayiptnvisi-dgqi~l 244 (340)
T KOG1353|consen 223 ---------------------------------------------------------QAGDVSAYIPTNVISI-DGQIFL 244 (340)
T ss_pred ---------------------------------------------------------cccceeeecccceeee-cchhHH
Confidence 7889999999999999 999999
Q ss_pred eHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 862 SRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 862 sr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
..+|+.+|+.||||+..|+||+.+ ...-+..++++..+|-.|++|+|+..++|
T Consensus 245 ~t~lfy~girpainvg~svsrvgs-aaq~kamkqvag~~klelaq~revaafaq 297 (340)
T KOG1353|consen 245 ETELFYKGIRPAINVGLSVSRVGS-AAQTKAMKQVAGSLKLELAQYREVAAFAQ 297 (340)
T ss_pred HHHHHHhccchhheeeeEeeeccc-hHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999985 34457889999999999999999998875
No 132
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.3e-33 Score=297.34 Aligned_cols=164 Identities=24% Similarity=0.316 Sum_probs=141.8
Q ss_pred HHHhhhccCcccccccccceeeccCcccccChhhhhhcCC--CCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHH
Q psy210 30 KLLESISRQPELENSLLNKTFLITGPRYCPSIEDKIYKFP--NTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIK 107 (915)
Q Consensus 30 ~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~k~~~~~--~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~ 107 (915)
+++|++-...+|+.+-..+|..| |-=---++|- |-+ .+++.+|+||+||..+++||+|||||+|+|++|+|+||
T Consensus 222 ~~FegCmPIE~mA~rG~~Tl~~G--PmKPvGL~~p--~~~tgk~pYAVVQLRqdna~GtLynmVGFQT~LkwgeQkrVf~ 297 (439)
T COG1206 222 KYFEGCMPIEVMAERGRKTLRFG--PMKPVGLEDP--RDPTGKRPYAVVQLRQDNAAGTLYNMVGFQTHLKWGEQKRVFR 297 (439)
T ss_pred ccccccCcHHHHHhhCcchhccC--CCCCcCCCCC--CCCCCCCceEEEEeeccccccceeeeeeeeeccchhhhhhhhh
Confidence 46777777788888877777663 2111112221 211 13899999999999999999999999999999999999
Q ss_pred HhcCccceeeecceeEEEEeecC-hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCccccc
Q psy210 108 KITGLNYSSIIRFAYNIEYDYFD-PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCT 186 (915)
Q Consensus 108 ~ipgl~~a~~~r~g~~~~~~~~~-p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~t 186 (915)
+|||||||+|+|||+||||+||| |..|++++++|..+++||||||+|+|||+||+|.|++|++|.+...+
T Consensus 298 mIPgLeNAefvRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQitG~EGYveSaA~Gllag~naa~~~~--------- 368 (439)
T COG1206 298 MIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYVESAASGLLAGINAARLAL--------- 368 (439)
T ss_pred hcCCcchhhhhhccceecccccCChhhhhHHhhcccCCCcEEeeeeecchhhhHHhhhhHHHhhHHHHHhc---------
Confidence 99999999999999999999999 99999999999999999999999999999999999999998777666
Q ss_pred CccceeccccccceeEeCCC
Q psy210 187 EKIFEIPVGFELLGRIVNSK 206 (915)
Q Consensus 187 g~~~~vpvg~~lLGrviD~l 206 (915)
|+++.+++.++++|.+++.+
T Consensus 369 g~~~~~~P~tT~~Gal~~yI 388 (439)
T COG1206 369 GEEPLIPPPTTALGALVNYI 388 (439)
T ss_pred CCCCCCCCchhHHHHHHHHH
Confidence 77889999999999999887
No 133
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=99.20 E-value=4.1e-12 Score=111.57 Aligned_cols=55 Identities=31% Similarity=0.561 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
++++++|+++|+|++|+|+|+|+++++++|++|||||++++++++||+|.+..+.
T Consensus 8 ~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea 62 (81)
T PRK05880 8 GALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEA 62 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999998886654
No 134
>PRK06876 F0F1 ATP synthase subunit C; Validated
Probab=99.16 E-value=5.2e-12 Score=110.44 Aligned_cols=61 Identities=43% Similarity=0.652 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChhh
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIED 63 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~ 63 (915)
..+++++|+++|+|++|+|+|+|+++++++|++|||||++++++++||++.+..+.-.|-.
T Consensus 6 ~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~ 66 (78)
T PRK06876 6 GLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIG 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999988776654443
No 135
>PRK13466 F0F1 ATP synthase subunit C; Provisional
Probab=99.10 E-value=1.3e-11 Score=104.34 Aligned_cols=58 Identities=29% Similarity=0.418 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChhhhhh
Q psy210 9 ASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIEDKIY 66 (915)
Q Consensus 9 ~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~k~~ 66 (915)
+++++|+|++|+|+|+|+++++++|+++||||++++++++||+|.+..+.-.|-.-++
T Consensus 4 ~~l~~glaa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvi 61 (66)
T PRK13466 4 GALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAM 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899999999999999999999999999999999999999988777655544443
No 136
>PRK13464 F0F1 ATP synthase subunit C; Provisional
Probab=99.08 E-value=2.2e-11 Score=110.55 Aligned_cols=62 Identities=35% Similarity=0.647 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChhhhh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIEDKI 65 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~k~ 65 (915)
++.+++|+++|+|++|+|+|+|+++++++|++|||||++++++++||+|.+..+.-.|-.-+
T Consensus 14 ~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alv 75 (101)
T PRK13464 14 LTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIA 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999998877665554443
No 137
>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional
Probab=99.07 E-value=1.8e-11 Score=106.72 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=51.5
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccC
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPS 60 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~s 60 (915)
..+.+++|+++ ++++|+|+|+|+++++++|++|||||++++++++||+|.+..+.-.
T Consensus 7 ~~~~igaGla~-iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~ 63 (77)
T MTH00222 7 AAKFVGAGAAT-IGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMG 63 (77)
T ss_pred HHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHH
Confidence 35788999998 9999999999999999999999999999999999999988765533
No 138
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=99.07 E-value=2.3e-11 Score=102.71 Aligned_cols=52 Identities=27% Similarity=0.334 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccCh
Q psy210 10 SIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSI 61 (915)
Q Consensus 10 ~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si 61 (915)
.+++|+|++|+|+|+|+++++++|++|||||++++++++||+|.+.-+.-.|
T Consensus 5 ~i~~GlaaiGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i 56 (66)
T PRK13467 5 ILALALACMGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFF 56 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999887655333
No 139
>PRK07558 F0F1 ATP synthase subunit C; Validated
Probab=99.04 E-value=3.7e-11 Score=104.19 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccCh
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSI 61 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si 61 (915)
.++.+++|+++ ++++|+|+|+|+++++++|++|||||++++++++||+|.+.-+.-.|
T Consensus 5 ~~~~igagla~-laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i 62 (74)
T PRK07558 5 ALKFIGAGLAC-IGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGI 62 (74)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHH
Confidence 36789999998 99999999999999999999999999999999999999887665433
No 140
>PRK08482 F0F1 ATP synthase subunit C; Validated
Probab=99.04 E-value=3.2e-11 Score=111.13 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChhhhh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIEDKI 65 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~k~ 65 (915)
.+++++|+++|+|++|+|+|+|+++++++|+++||||++++++++||+|.+..+.-.|-.-+
T Consensus 31 ~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alv 92 (105)
T PRK08482 31 YSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALV 92 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999998877665554433
No 141
>PRK07874 F0F1 ATP synthase subunit C; Validated
Probab=99.03 E-value=4.4e-11 Score=104.65 Aligned_cols=56 Identities=38% Similarity=0.551 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChhh
Q psy210 8 AASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIED 63 (915)
Q Consensus 8 ~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~ 63 (915)
.+.+++|+|++|+|+|+|+++++++|++|||||+++++++.||+|.+..+.-.|-.
T Consensus 18 ~~~ig~GlaaiGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~ 73 (80)
T PRK07874 18 LGAVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIG 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999988766544433
No 142
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.00 E-value=1.6e-08 Score=100.00 Aligned_cols=160 Identities=33% Similarity=0.485 Sum_probs=123.7
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGL 764 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~ 764 (915)
++|+|++|+|||+++..++..... +...++|....+...+..+....+...+..++..++....+........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 74 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL------ 74 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHH------
Confidence 579999999999999999997764 3456778878877777765554455555566666666666655444332
Q ss_pred HHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCC
Q psy210 765 SIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLT 844 (915)
Q Consensus 765 ~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~ 844 (915)
.++.++....+..++++|+++.+.+...+. ..+++..+...+..|.+++. ...+|++.+.-...++..
T Consensus 75 ~~~~~~~~~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~---~~~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 75 SKAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERAR---KGGVTVIFTLQVPSGDKG 142 (165)
T ss_pred HHHHHHHhCCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHh---cCCceEEEEEecCCcccc
Confidence 556778888888899999999999876653 34677788888999998874 368999999999998888
Q ss_pred CC----cccccccccCcEEEeeH
Q psy210 845 DP----SPSTTFTHLDSTIVLSR 863 (915)
Q Consensus 845 dp----i~~~~~~i~dg~ivLsr 863 (915)
++ ....+....|+.|+|+|
T Consensus 143 ~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 143 DPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred CcccccCccceeeecceEEEEeC
Confidence 88 88889999999999976
No 143
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=98.99 E-value=9.7e-11 Score=104.39 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccCh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSI 61 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si 61 (915)
.+++++|+++|++++|+|+|+|+++++++|+++||||+.++++++||++.+.-+.-.|
T Consensus 9 ~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai 66 (86)
T TIGR03322 9 ASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAI 66 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999998886655333
No 144
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=98.97 E-value=1.4e-10 Score=102.40 Aligned_cols=60 Identities=35% Similarity=0.510 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChhh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIED 63 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~ 63 (915)
++.+++|+++|++++|+|+|+|+++++++|++|||||+.++++++||++.+.-++-.|--
T Consensus 8 ~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~ 67 (81)
T CHL00061 8 ASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999888766654433
No 145
>PRK13471 F0F1 ATP synthase subunit C; Provisional
Probab=98.94 E-value=2e-10 Score=102.01 Aligned_cols=58 Identities=28% Similarity=0.540 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccCh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSI 61 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si 61 (915)
.+++++|+++|+|++|+|+|+|+++++++|+++||||+.++++++||++.+.-++-.|
T Consensus 15 ~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~i 72 (85)
T PRK13471 15 GKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGI 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999998887665433
No 146
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=98.93 E-value=2.4e-10 Score=101.21 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccCh
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSI 61 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si 61 (915)
..+++++|+++|++++|+|+|+|+++++++|+++||||+.++++++||++.+.-++-.|
T Consensus 7 ~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai 65 (82)
T PRK13468 7 VVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAI 65 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35779999999999999999999999999999999999999999999998776555333
No 147
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.87 E-value=1.8e-07 Score=111.40 Aligned_cols=191 Identities=15% Similarity=0.125 Sum_probs=107.7
Q ss_pred cccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh--cCc
Q psy210 663 NNILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE--SNV 738 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~--~~~ 738 (915)
.+.+.|||.-+|-++. +-+|.-+.|.|++|+|||+|+.+++.+..++ ..-++|+..-|.++++.+-.+.+.- ...
T Consensus 252 ~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis~e~~~~~i~~~~~~~g~~~~~~ 330 (509)
T PRK09302 252 NERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRR-GERCLLFAFEESRAQLIRNARSWGIDLEKM 330 (509)
T ss_pred cccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCHHHHHHHHHHcCCChHHH
Confidence 4457899999999986 8899999999999999999999999876543 4557777777766665544333210 001
Q ss_pred cc--cEEEEEE-cCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHH
Q psy210 739 LD--KVSLIYG-QMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815 (915)
Q Consensus 739 ~~--~~~vv~~-t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l 815 (915)
.+ +..++.. +......+. ...+.+...+.+.+ ++++||+|-+..+... ..+-..+
T Consensus 331 ~~~g~l~i~~~~~~~~~~~~~------~~~i~~~i~~~~~~-~vVIDslt~l~~~~~~---------------~~~~~~l 388 (509)
T PRK09302 331 EEKGLLKIICARPESYGLEDH------LIIIKREIEEFKPS-RVAIDPLSALARGGSL---------------NEFRQFV 388 (509)
T ss_pred hhcCCceeecCCcccCCHHHH------HHHHHHHHHHcCCC-EEEEcCHHHHHHhCCH---------------HHHHHHH
Confidence 11 1112221 111111121 22333444444555 7889999977543210 0111112
Q ss_pred HHHHHHhcCCCCCceeEEEEEEecCCCCCCCcc-cccccccCcEEEeeHHHHhcCCCccccCCCC
Q psy210 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSP-STTFTHLDSTIVLSRQIAELGIYPAIDPLES 879 (915)
Q Consensus 816 ~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~-~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S 879 (915)
..|...+. .-.+|++.|..++...-.++.. ..+.++.|+-|.|+..--.....-.+.+.+.
T Consensus 389 ~~l~~~~k---~~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K~ 450 (509)
T PRK09302 389 IRLTDYLK---SEEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALYVLKM 450 (509)
T ss_pred HHHHHHHH---hCCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEeecCCeeEEEEEEEEc
Confidence 22222221 1236888887766532122222 2466788999999865433323344555554
No 148
>PRK07354 F0F1 ATP synthase subunit C; Validated
Probab=98.87 E-value=7.1e-10 Score=98.32 Aligned_cols=55 Identities=36% Similarity=0.518 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
++.+++|+++|++++|+|+|+|.++++++|++|||||+.+++++.||++.+.-+.
T Consensus 8 ~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea 62 (81)
T PRK07354 8 ASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMES 62 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998776554
No 149
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.86 E-value=6.2e-08 Score=95.75 Aligned_cols=160 Identities=33% Similarity=0.438 Sum_probs=119.6
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhh
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCT 339 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~t 339 (915)
++|+|++|+|||+++.+.+......+..++|....+......+....+...+..++..++............. .
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 75 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL------S 75 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHH------H
Confidence 5799999999999965544444445566789888888877766655555555566666665555554443322 5
Q ss_pred hHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccce
Q psy210 340 IGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419 (915)
Q Consensus 340 iAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~ 419 (915)
++.++.......++|+|+++.+.+...+. ..+++..+...+.+|++++. ...+|.
T Consensus 76 ~~~~~~~~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~----------------~~~~~v 130 (165)
T cd01120 76 KAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERAR----------------KGGVTV 130 (165)
T ss_pred HHHHHHhCCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHh----------------cCCceE
Confidence 56777777777899999999999876653 34677777778888888854 358899
Q ss_pred eEEEEecCCCCCCc----cccccccccCcEEEeeh
Q psy210 420 FPIIETLEGDVTSF----IPTNVISITDGQIFLDT 450 (915)
Q Consensus 420 ~~~v~~~~~d~~~p----i~~~~~~i~dgqi~Lsr 450 (915)
+.+...+.++..++ ..+.+.++.|+-|+|+|
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 131 IFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred EEEEecCCccccCcccccCccceeeecceEEEEeC
Confidence 99999998888888 88899999999999986
No 150
>PRK07159 F0F1 ATP synthase subunit C; Validated
Probab=98.82 E-value=7.4e-10 Score=100.92 Aligned_cols=58 Identities=29% Similarity=0.465 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIE 62 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~ 62 (915)
.+.+++|+++ +|++|+|+|+|+++++++|++|||||+++++++.||++.+.-++-.|-
T Consensus 31 ~~~igaGLa~-laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~ 88 (100)
T PRK07159 31 AAYIGAGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIY 88 (100)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4678999998 999999999999999999999999999999999999988876654443
No 151
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=98.82 E-value=2.3e-08 Score=94.97 Aligned_cols=87 Identities=34% Similarity=0.489 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh-ccC-CCCHHHHHHHHhHHHHHHHhhcCCCCCc-------c-HHHHHHHHHHHhcccc
Q psy210 480 KKLSGDIRIMLAQYRELESFSK-FSS-DLDIVTKTQLYNGEKISLLMKQKPHENY-------S-IVELIIILLIIKNRFF 549 (915)
Q Consensus 480 ~~~a~~lr~~la~~~e~e~l~~-lG~-~ld~~~~~~L~~~~~i~~fL~Q~~~e~~-------s-~ee~l~~L~ai~~G~L 549 (915)
++++++++..|++|+|++++++ +|+ +|+++++..|.++++|++||+|+.++|+ + +++++..+|.+.+|.+
T Consensus 1 k~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e~LkQ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 80 (113)
T PF00306_consen 1 KKVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIREFLKQNAFDPVPLEKQYVMILEETIDLFYAILRGKF 80 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHHHT-BSTTTTTSSHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCCCCCCCcCcchhhhHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999 685 6999999999999999999999999999 7 8888889999999999
Q ss_pred cccchhhHHHHHHHHHH
Q psy210 550 FKIPIKQIELFEINIIK 566 (915)
Q Consensus 550 d~vp~~ev~~f~~~Li~ 566 (915)
+.+|.+++..+......
T Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (113)
T PF00306_consen 81 DDIPEEELEKIETKDIE 97 (113)
T ss_dssp TTS-GGGHHHHHHHHHH
T ss_pred ccCCHHHHHHHhhHHHH
Confidence 99999999888766554
No 152
>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
Probab=98.74 E-value=2.4e-09 Score=94.56 Aligned_cols=58 Identities=36% Similarity=0.635 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccCh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSI 61 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si 61 (915)
+.++++|+++|++++|+|+|+|++++++++++|||||+++++|+.||++.+.-+.-.|
T Consensus 8 ~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i 65 (79)
T COG0636 8 LALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGI 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999998876655444
No 153
>PRK13469 F0F1 ATP synthase subunit C; Provisional
Probab=98.71 E-value=3.5e-09 Score=93.50 Aligned_cols=54 Identities=35% Similarity=0.577 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
++.+++|+++ ++++|+|+|+|+++++++++++||||+.++++++|+++.+.-+.
T Consensus 10 ~~~igagla~-laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Ea 63 (79)
T PRK13469 10 MSAIGAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEA 63 (79)
T ss_pred HHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHH
Confidence 5678999999 99999999999999999999999999999999999997765444
No 154
>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c. This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.
Probab=98.68 E-value=2.1e-09 Score=89.08 Aligned_cols=44 Identities=50% Similarity=0.717 Sum_probs=40.1
Q ss_pred HHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCccccc
Q psy210 16 ASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCP 59 (915)
Q Consensus 16 ~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~ 59 (915)
+++|+|+|+|+++++++|++|||||++++++++||+|.+.-+.-
T Consensus 1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~ 44 (58)
T TIGR01260 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAI 44 (58)
T ss_pred CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988765543
No 155
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.62 E-value=3e-06 Score=100.23 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=112.0
Q ss_pred ccccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh--cC
Q psy210 662 NNNILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE--SN 737 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~--~~ 737 (915)
..+.+.|||.-+|-++- +.+|.-++|.|+||+|||+|+.+++.+.+++ .+-++|+.--|..+++..=.+.+.= +.
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~~i~~~~~~lg~~~~~ 319 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRAQLLRNAYSWGIDFEE 319 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHHHHHHHHHHcCCChHH
Confidence 34458889988888763 7899999999999999999999999987654 4568998888877766554443310 11
Q ss_pred cccc-EEEEEEc--CCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHH
Q psy210 738 VLDK-VSLIYGQ--MNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814 (915)
Q Consensus 738 ~~~~-~~vv~~t--~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~ 814 (915)
..++ .+.+... ....+.+ .+-.+-+...+.+.+ ++++||++-+..++.+ ..+ -.....
T Consensus 320 ~~~~g~l~~~~~~p~~~~~~~------~~~~i~~~i~~~~~~-~vvIDsi~~~~~~~~~-----------~~~-r~~~~~ 380 (484)
T TIGR02655 320 MEQQGLLKIICAYPESAGLED------HLQIIKSEIADFKPA-RIAIDSLSALARGVSN-----------NAF-RQFVIG 380 (484)
T ss_pred HhhCCcEEEEEcccccCChHH------HHHHHHHHHHHcCCC-EEEEcCHHHHHHhcCH-----------HHH-HHHHHH
Confidence 1111 1223221 1112211 222223334444555 5678999987655421 001 011222
Q ss_pred HHHHHHHhcCCCCCceeEEEEEEecC--CCCCCCcc-cccccccCcEEEeeHHHHhcCCCccccCCCC
Q psy210 815 MGKLQERISSTKNGTITSVQAIYVPA--DDLTDPSP-STTFTHLDSTIVLSRQIAELGIYPAIDPLES 879 (915)
Q Consensus 815 l~~l~ERag~~~~GSiT~i~~v~~~~--~d~~dpi~-~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S 879 (915)
|.+++- .-.||.+.|..++. ++ .+++ ..+-++.|+-|.|...-.+....-+|-|+|+
T Consensus 381 l~~~lk------~~~it~~~t~~~~~~~~~--~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K~ 440 (484)
T TIGR02655 381 VTGYAK------QEEITGFFTNTSDQFMGS--HSITDSHISTITDTILMLQYVEIRGEMSRAINVFKM 440 (484)
T ss_pred HHHHHh------hCCCeEEEeecccccccC--CccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEEc
Confidence 222222 23488888877664 32 2223 2456677999988766555556666776665
No 156
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.99 E-value=1.8e-05 Score=84.13 Aligned_cols=179 Identities=18% Similarity=0.154 Sum_probs=101.1
Q ss_pred ccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh--cCcccc
Q psy210 666 LETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE--SNVLDK 741 (915)
Q Consensus 666 l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~--~~~~~~ 741 (915)
+.|||.-+|-++ -+-+|.-++|.|+||+|||+|+.+++.+...+..+-++|+..-|.++++.+-.+.+.- +...++
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~ 80 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDS 80 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHT
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhc
Confidence 369999999998 7889999999999999999999999876554313567899888888776665544310 011111
Q ss_pred -EEEEEEcCCCChH-hHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHH
Q psy210 742 -VSLIYGQMNEPSG-NRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819 (915)
Q Consensus 742 -~~vv~~t~d~~~~-~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ 819 (915)
...+......... .....-...-.+.+.+.+.+. -.+++||+|-+ .++.. |..+...+..|.
T Consensus 81 g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsls~l-~~~~~--------------~~~~r~~l~~l~ 144 (226)
T PF06745_consen 81 GKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSLSAL-LLYDD--------------PEELRRFLRALI 144 (226)
T ss_dssp TSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETHHHH-TTSSS--------------GGGHHHHHHHHH
T ss_pred CCEEEEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECHHHH-hhcCC--------------HHHHHHHHHHHH
Confidence 1334433332110 011122234555566666555 46777999976 22211 111222333444
Q ss_pred HHhcCCCCCceeEEEEEEecCCCCCCCccccccc-ccCcEEEeeHH
Q psy210 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFT-HLDSTIVLSRQ 864 (915)
Q Consensus 820 ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~-i~dg~ivLsr~ 864 (915)
.... +.| +|++.|..++.+...+. ...+.. +.||-|.|+..
T Consensus 145 ~~l~--~~~-~t~llt~~~~~~~~~~~-~~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 145 KFLK--SRG-VTTLLTSEMPSGSEDDG-TFGIEHYLADGVIELRYE 186 (226)
T ss_dssp HHHH--HTT-EEEEEEEEESSSSSSSS-STSHHHHHSSEEEEEEEE
T ss_pred HHHH--HCC-CEEEEEEccccCccccc-ccchhhhcccEEEEEEEE
Confidence 4331 123 67788887654322222 123333 78999999864
No 157
>PRK06251 V-type ATP synthase subunit K; Validated
Probab=97.95 E-value=6.2e-06 Score=76.03 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRY 57 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~ 57 (915)
.+.+++|+++|++++|+|+|+|+++++++++++||||+.++ ++++.+.-+
T Consensus 35 ~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g~----~ii~~al~E 84 (102)
T PRK06251 35 GINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFGT----VLIFVAIGE 84 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH----HHHHHHHHH
Confidence 45789999999999999999999999999999999999775 566554433
No 158
>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....
Probab=97.93 E-value=4.2e-06 Score=71.80 Aligned_cols=48 Identities=38% Similarity=0.661 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGP 55 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~ 55 (915)
++++++++++|++++|+|+|+|.++++++++++|||| ++++++++.+.
T Consensus 1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~----~~~~~li~~~~ 48 (66)
T PF00137_consen 1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPE----LFTKMLIGAAF 48 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG----HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cchhhhhhHHH
Confidence 3678999999999999999999999999999999999 67777776553
No 159
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.93 E-value=0.00014 Score=79.19 Aligned_cols=185 Identities=19% Similarity=0.157 Sum_probs=115.5
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhh-------
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMK------- 734 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~------- 734 (915)
+.+.|||.-+|-++- +-+|.-++|.|+||+|||+++.+.+.+.+.. ..-|+|+...|.++++.+-...+.
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~ 81 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARSFGWDLEVYI 81 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHHcCCCHHHHh
Confidence 467899999999998 8899999999999999999999999987754 567899999999999988776432
Q ss_pred hcCccccEEEEEEcCCCChH---h--HHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcc
Q psy210 735 ESNVLDKVSLIYGQMNEPSG---N--RLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP 809 (915)
Q Consensus 735 ~~~~~~~~~vv~~t~d~~~~---~--r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~ 809 (915)
+.+.+ .++-..+...+.. . -.....+.-.+-+...+.+ ...+++||+|.+...+..=... -
T Consensus 82 ~~g~l--~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~~~~~-----------r 147 (260)
T COG0467 82 EKGKL--AILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLNDPALV-----------R 147 (260)
T ss_pred hcCCE--EEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHhhhcCchHHH-----------H
Confidence 22211 1222222222211 0 1223445566666777767 5666779999654433322211 0
Q ss_pred hhhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCC
Q psy210 810 TLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIY 871 (915)
Q Consensus 810 ~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~ 871 (915)
.....+.++.+ +.| +|++.+...+.+...+. ...-.+.||.|.|+....+.+.+
T Consensus 148 ~~~~~l~~~~~-----~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~ 201 (260)
T COG0467 148 RILLLLKRFLK-----KLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGD 201 (260)
T ss_pred HHHHHHHHHHH-----hCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeecccCceE
Confidence 11122222222 234 77776665443333221 13334889999999877764433
No 160
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.90 E-value=0.00015 Score=76.41 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=93.3
Q ss_pred ccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCc--hHHHHHHHhhhcCcccc
Q psy210 666 LETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSR--EGNDFYHEMKESNVLDK 741 (915)
Q Consensus 666 l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~--ev~e~~~~~~~~~~~~~ 741 (915)
+.|||..+|-++. +.+|.=+.|+|+||+|||+++.+++.+..+++ .-++|+- +|... ...++.+... .....+
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g-~~v~yi~-~e~~~~~~~~~~~~~~~-~~~~~~ 77 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQG-KKVAYID-TEGLSSERFRQIAGDRP-ERAASS 77 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEE-CCCCCHHHHHHHHhHCh-HhhhcC
Confidence 4799999999986 77888899999999999999999999876542 3345543 22221 1222221110 112223
Q ss_pred EEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHH
Q psy210 742 VSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQER 821 (915)
Q Consensus 742 ~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ER 821 (915)
++++...+. .+.. ..+...+.+...+ --++++||++.+.++..+-.. + .......+.+++.+
T Consensus 78 -~~~~~~~~~--~~~~----~~~~~~~~~~~~~-~~lvvIDsi~~l~~~~~~~~~---~-------~~~~~~~l~~~~~~ 139 (218)
T cd01394 78 -IIVFEPMDF--NEQG----RAIQETETFADEK-VDLVVVDSATALYRLELGDDD---T-------TIKNYRELAKQLTF 139 (218)
T ss_pred -EEEEeCCCH--HHHH----HHHHHHHHHHhcC-CcEEEEechHHhhhHHhcCcc---c-------hHHHHHHHHHHHHH
Confidence 444444332 2221 1222223344434 457888999998655333110 0 01111222222211
Q ss_pred hcC-CCCCceeEEEEEEecC--C-CCCCCc-ccccccccCcEEEeeHHH
Q psy210 822 ISS-TKNGTITSVQAIYVPA--D-DLTDPS-PSTTFTHLDSTIVLSRQI 865 (915)
Q Consensus 822 ag~-~~~GSiT~i~~v~~~~--~-d~~dpi-~~~~~~i~dg~ivLsr~L 865 (915)
.-. .+.-.+|++.|..+.. + +...|. ....-.+.|+-|.|++.-
T Consensus 140 L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 140 LLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKLR 188 (218)
T ss_pred HHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEEEEEEEcC
Confidence 000 0123477777766542 1 111222 113455558889998754
No 161
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.80 E-value=0.00017 Score=78.53 Aligned_cols=191 Identities=19% Similarity=0.188 Sum_probs=116.9
Q ss_pred ccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHH-------hc
Q psy210 239 EPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKL-------KY 309 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l-------~~ 309 (915)
+.+.|||.-+|-++- +-+|.-++|.|++|||||+++++.+.+....+-.|+|+..-|..+++.+....+ .+
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~ 82 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIE 82 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhh
Confidence 456799999999999 556999999999999999999999999887787899999999999988888653 22
Q ss_pred cCCcceEEEEEecCCCCHHH---h--hhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCc
Q psy210 310 YNCMDYTVVVAATAADSAAE---Q--YISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGD 384 (915)
Q Consensus 310 ~~~~~~tvvv~~~a~~~~~~---r--~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~ 384 (915)
.+.+ .++-..+...+... . .......-.+-+...+.+ ...+++||++.+...+.. |..
T Consensus 83 ~g~l--~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~--------------~~~ 145 (260)
T COG0467 83 KGKL--AILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLND--------------PAL 145 (260)
T ss_pred cCCE--EEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHhhhcCc--------------hHH
Confidence 2221 12222222222110 0 112223444555555555 567889999976544321 110
Q ss_pred hhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCC-eeee
Q psy210 385 VFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRP-AINV 463 (915)
Q Consensus 385 ~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~P-aId~ 463 (915)
. -+...+.-++. .+.+ +|++.+...+.+...+. ...-++.||.|.|+....+.+.+- .+.+
T Consensus 146 ~----r~~~~~l~~~~-----------~~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~~r~~~~i 207 (260)
T COG0467 146 V----RRILLLLKRFL-----------KKLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGGDRRYLRI 207 (260)
T ss_pred H----HHHHHHHHHHH-----------HhCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeecccCceEEEEEEE
Confidence 0 11112222221 1134 78777765543322221 234458999999999877644433 4444
Q ss_pred c
Q psy210 464 G 464 (915)
Q Consensus 464 ~ 464 (915)
.
T Consensus 208 ~ 208 (260)
T COG0467 208 L 208 (260)
T ss_pred E
Confidence 3
No 162
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.79 E-value=4.8e-05 Score=80.76 Aligned_cols=176 Identities=20% Similarity=0.242 Sum_probs=100.1
Q ss_pred ccccceeeeccc--cccccceeeeecCCCCChhHHHHHHHHhhcCC-CeEEEEEeeccchhhHHHHHHHHhccCC-----
Q psy210 241 LLTGIKSIDSMI--PIGKGQRELIIGDRQTGKTTIAIDTIINQKNK-NVICIYVCIGQKISSLINVINKLKYYNC----- 312 (915)
Q Consensus 241 l~TGi~aiD~l~--pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~~l~~~~~----- 312 (915)
+.|||..+|.++ -+-+|.-++|.|++|+|||+++++.+.++... +-.|+|+..-+..+++.+-.+ .-|.
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~---s~g~d~~~~ 77 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMK---SFGWDLEEY 77 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHH---TTTS-HHHH
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHH---HcCCcHHHH
Confidence 369999999999 45569999999999999999999999887554 556899999888865555444 3333
Q ss_pred cce-EEEEEecCCCCHH-HhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhh
Q psy210 313 MDY-TVVVAATAADSAA-EQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHS 390 (915)
Q Consensus 313 ~~~-tvvv~~~a~~~~~-~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~ 390 (915)
.++ ...+......... .....-...-.+.+.+.+.+. -.+|+||++.+ .++ .. |......+-
T Consensus 78 ~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsls~l-~~~--------~~------~~~~r~~l~ 141 (226)
T PF06745_consen 78 EDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSLSAL-LLY--------DD------PEELRRFLR 141 (226)
T ss_dssp HHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETHHHH-TTS--------SS------GGGHHHHHH
T ss_pred hhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECHHHH-hhc--------CC------HHHHHHHHH
Confidence 111 1233322111100 001111133455666666555 47889999987 221 00 111222333
Q ss_pred hHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccccccc-ccCcEEEeehhh
Q psy210 391 RLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVIS-ITDGQIFLDTNL 452 (915)
Q Consensus 391 ~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~-i~dgqi~Lsr~l 452 (915)
.|+....+ . .+|.+.+..++.+.-.... ..+.. +.||-|.|+..-
T Consensus 142 ~l~~~l~~---------------~-~~t~llt~~~~~~~~~~~~-~~i~~~l~D~vI~L~~~~ 187 (226)
T PF06745_consen 142 ALIKFLKS---------------R-GVTTLLTSEMPSGSEDDGT-FGIEHYLADGVIELRYEE 187 (226)
T ss_dssp HHHHHHHH---------------T-TEEEEEEEEESSSSSSSSS-TSHHHHHSSEEEEEEEEE
T ss_pred HHHHHHHH---------------C-CCEEEEEEccccCcccccc-cchhhhcccEEEEEEEEe
Confidence 44444322 2 3577778776543222222 22333 899999998653
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.72 E-value=6.8e-05 Score=70.99 Aligned_cols=145 Identities=23% Similarity=0.155 Sum_probs=79.9
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~ 760 (915)
+++.+.|+|++|+|||+++..+++.+.... ..++...++...+...+... ......+.....+...+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 67 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-----------LIIVGGKKASGSGELRL 67 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-----------hhhhhccCCCCCHHHHH
Confidence 478999999999999999999998775422 12344444444443322211 11112223334444555
Q ss_pred HHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEecC
Q psy210 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPA 840 (915)
Q Consensus 761 ~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~ 840 (915)
...++.|++.. ..++++|++.++.............. ....... .....+.++.+...
T Consensus 68 ~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~~~i~~~~~-- 125 (148)
T smart00382 68 RLALALARKLK----PDVLILDEITSLLDAEQEALLLLLEE-------------LRLLLLL---KSEKNLTVILTTND-- 125 (148)
T ss_pred HHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHhhhh-------------hHHHHHH---HhcCCCEEEEEeCC--
Confidence 55666666544 68889999998776665554332222 0001110 11344556665543
Q ss_pred CCCCCCcccccccccCcEEEee
Q psy210 841 DDLTDPSPSTTFTHLDSTIVLS 862 (915)
Q Consensus 841 ~d~~dpi~~~~~~i~dg~ivLs 862 (915)
...+.+...+..++.++.+.
T Consensus 126 --~~~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 126 --EKDLGPALLRRRFDRRIVLL 145 (148)
T ss_pred --CccCchhhhhhccceEEEec
Confidence 34455555555666666543
No 164
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.59 E-value=0.00034 Score=83.50 Aligned_cols=189 Identities=18% Similarity=0.163 Sum_probs=110.6
Q ss_pred cCccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC--
Q psy210 237 VNEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-- 312 (915)
Q Consensus 237 ~~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-- 312 (915)
..+.+.|||..+|.++. +-+|.-++|.|++|+|||+++++.+.+....+-.|+|....+..+++.+-.+.+ |.
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~---g~~~ 327 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSW---GIDL 327 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHc---CCCh
Confidence 35568899999999986 667999999999999999999888877655556688998888776655444332 22
Q ss_pred ---cc--eEEEEEec-CCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchh
Q psy210 313 ---MD--YTVVVAAT-AADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVF 386 (915)
Q Consensus 313 ---~~--~tvvv~~~-a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~ 386 (915)
.+ +..++... ......+ ....+.+...+.+.+ ++|+||+|-+..... + ..+-
T Consensus 328 ~~~~~~g~l~i~~~~~~~~~~~~------~~~~i~~~i~~~~~~-~vVIDslt~l~~~~~---------~------~~~~ 385 (509)
T PRK09302 328 EKMEEKGLLKIICARPESYGLED------HLIIIKREIEEFKPS-RVAIDPLSALARGGS---------L------NEFR 385 (509)
T ss_pred HHHhhcCCceeecCCcccCCHHH------HHHHHHHHHHHcCCC-EEEEcCHHHHHHhCC---------H------HHHH
Confidence 11 11122111 1111111 122344444444555 789999998864321 0 0111
Q ss_pred hhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcc-ccccccccCcEEEeehhhhhcCCCCeeeecC
Q psy210 387 YLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFI-PTNVISITDGQIFLDTNLFNSNYRPAINVGL 465 (915)
Q Consensus 387 ~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi-~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~ 465 (915)
..+.+|...+. .-.+|.+.|..++...-.++. +..+.++.||-|.|+..--.....-.+.+.+
T Consensus 386 ~~l~~l~~~~k----------------~~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I~K 449 (509)
T PRK09302 386 QFVIRLTDYLK----------------SEEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALYVLK 449 (509)
T ss_pred HHHHHHHHHHH----------------hCCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEeecCCeeEEEEEEEE
Confidence 11222332221 123688888776553212222 2357899999999987544333334455554
Q ss_pred C
Q psy210 466 S 466 (915)
Q Consensus 466 S 466 (915)
.
T Consensus 450 ~ 450 (509)
T PRK09302 450 M 450 (509)
T ss_pred c
Confidence 4
No 165
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.56 E-value=0.00057 Score=81.12 Aligned_cols=190 Identities=17% Similarity=0.117 Sum_probs=116.5
Q ss_pred cCccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-c
Q psy210 237 VNEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-M 313 (915)
Q Consensus 237 ~~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 313 (915)
..+.+.|||..+|.++- +-+|.-++|.|++|+|||+|+++.+.+.+..+-.|+|....|..+++..=.+.+ |. +
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~l---g~~~ 317 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSW---GIDF 317 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHc---CCCh
Confidence 55679999999999885 456999999999999999999999888765555789999998877665544443 32 1
Q ss_pred ----ce-EEEEEec-CCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhh
Q psy210 314 ----DY-TVVVAAT-AADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFY 387 (915)
Q Consensus 314 ----~~-tvvv~~~-a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~ 387 (915)
++ .+.+... ..+..... ..-.+-+...+.+.+ +||+||++-+..++.. +. +-.
T Consensus 318 ~~~~~~g~l~~~~~~p~~~~~~~-----~~~~i~~~i~~~~~~-~vvIDsi~~~~~~~~~-----------~~----~r~ 376 (484)
T TIGR02655 318 EEMEQQGLLKIICAYPESAGLED-----HLQIIKSEIADFKPA-RIAIDSLSALARGVSN-----------NA----FRQ 376 (484)
T ss_pred HHHhhCCcEEEEEcccccCChHH-----HHHHHHHHHHHcCCC-EEEEcCHHHHHHhcCH-----------HH----HHH
Confidence 11 1222221 11111111 222233334444555 7789999988655311 00 011
Q ss_pred hhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccc-cccccccCcEEEeehhhhhcCCCCeeeecCC
Q psy210 388 LHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIP-TNVISITDGQIFLDTNLFNSNYRPAINVGLS 466 (915)
Q Consensus 388 ~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~-~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S 466 (915)
.+.+|.+-+. .-.||.+.+.++++---..+++ ..+-++.|+-|.|...-.+....-+|-++++
T Consensus 377 ~~~~l~~~lk----------------~~~it~~~t~~~~~~~~~~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V~K~ 440 (484)
T TIGR02655 377 FVIGVTGYAK----------------QEEITGFFTNTSDQFMGSHSITDSHISTITDTILMLQYVEIRGEMSRAINVFKM 440 (484)
T ss_pred HHHHHHHHHh----------------hCCCeEEEeecccccccCCccCCCCeeEeeeEEEEEEEEecCCEEEEEEEEEEc
Confidence 1223333222 2367888887776510122333 3578899999999766555556666776665
No 166
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.53 E-value=0.0003 Score=75.21 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=51.0
Q ss_pred cccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchH
Q psy210 663 NNILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREG 726 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev 726 (915)
.+.+.|||.-+|-++. +-+|.-+.|.|++|+|||+|+.+++.+..++ ..-++|+..-+..+++
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENTSKSY 68 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHH
Confidence 3568999999999875 6699999999999999999999998865443 4567888776665544
No 167
>PRK04328 hypothetical protein; Provisional
Probab=97.52 E-value=0.0012 Score=71.60 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=55.2
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHH
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHE 732 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~ 732 (915)
+.+.|||.-+|-++. +-+|.-++|.|+||+|||+|+.+++.+..++ ..-++|+...|.++++.+..+.
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHHHHHHHHHH
Confidence 347899999999876 5589999999999999999999998865433 4668999999988876654443
No 168
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=97.50 E-value=3.4e-05 Score=77.48 Aligned_cols=59 Identities=15% Similarity=0.371 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChhhhhh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIEDKIY 66 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~k~~ 66 (915)
++.+++++++|++++|+++|+|+++++++++++||||+.. +++++.+..+.-.|---|+
T Consensus 10 ~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~~----~~li~~al~Ea~aIyglvi 68 (161)
T PRK14893 10 LAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMFA----RGIIFSALPETQAIYGFLI 68 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH----HHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999864 4788777666655555543
No 169
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.49 E-value=0.0021 Score=70.08 Aligned_cols=176 Identities=15% Similarity=0.119 Sum_probs=93.8
Q ss_pred ccccceeeeccc----------------ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHH-H
Q psy210 666 LETGIKVIDLLC----------------PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGN-D 728 (915)
Q Consensus 666 l~TGir~ID~l~----------------pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~-e 728 (915)
+.|||.-+|-++ =+-+|.-..|.|+||+|||+++.+++.+.+++ ..-++|+..-|..+... +
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~~~~~~~ 82 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPANFVYTS 82 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCchHHHHH
Confidence 578999999885 35699999999999999999999998876544 34567776544333222 1
Q ss_pred HHHHhhhcC-----ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC-CCcEEEEecchhhHHHhhhhhhhhcCCCC
Q psy210 729 FYHEMKESN-----VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTP 802 (915)
Q Consensus 729 ~~~~~~~~~-----~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A~reis~~~ge~p 802 (915)
+.+....-| ..++ +++........ .+ ..+..-+....+..++ +.+ ++++||++.+-....+
T Consensus 83 l~~~a~~~g~d~~~~~~~-l~~id~~~~~~-~~-~~~~~l~~~l~~~i~~~~~~-~vVIDSls~l~~~~~~--------- 149 (259)
T TIGR03878 83 LKERAKAMGVDFDKIEEN-IILIDAASSTE-LR-ENVPNLLATLAYAIKEYKVK-NTVIDSITGLYEAKEM--------- 149 (259)
T ss_pred HHHHHHHcCCCHHHHhCC-EEEEECCCchh-hh-hhHHHHHHHHHHHHHhhCCC-EEEEcCchHhcccchH---------
Confidence 222222111 1223 44443322111 11 1222223333333333 555 6678999854221000
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEecCC--CCC-CCccc-ccccccCcEEEeeHHH
Q psy210 803 SAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPAD--DLT-DPSPS-TTFTHLDSTIVLSRQI 865 (915)
Q Consensus 803 ~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~--d~~-dpi~~-~~~~i~dg~ivLsr~L 865 (915)
-+ ......+..++.+ -.+|++.|..+..+ +.+ +|... .+-.+.||-|.|+...
T Consensus 150 ---~~-r~~~~~L~~~lk~------~~~t~ll~~e~~~~~~~~~~~~~~~~~~~~l~D~vI~L~~~~ 206 (259)
T TIGR03878 150 ---MA-REIVRQLFNFMKK------WYQTALFVSQKRSGHEELSAEAAGGYAVSHIVDGTIVLAKQL 206 (259)
T ss_pred ---HH-HHHHHHHHHHHHH------cCCeEEEEeccccCcccccccccCCcceeEeeccEEEEeeee
Confidence 00 0111222333322 23577766554332 111 34333 4566779999999654
No 170
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=97.47 E-value=3.7e-05 Score=76.94 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
++.+++|+++|++.+++|+|+|++++++++++|||| ++++++|+++.+..+.
T Consensus 89 ~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P---~~l~~~~ii~~a~~Ea 140 (157)
T PRK08344 89 LALLGAGLLVGLAELLSAIPQGIICASGIGALPRTP---GKTFTQTIILAAYAEL 140 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999 6888889887665443
No 171
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.43 E-value=0.00045 Score=72.87 Aligned_cols=115 Identities=21% Similarity=0.222 Sum_probs=67.0
Q ss_pred ccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccch-hhHHHHHHHHhccCCcceEE
Q psy210 241 LLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKI-SSLINVINKLKYYNCMDYTV 317 (915)
Q Consensus 241 l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~-~ev~~~~~~l~~~~~~~~tv 317 (915)
+.|||..+|.++. +.+|.=..|.|++|+|||+++++.+.+....+-.|+|.-..+.. +.+.++.+... .....+ +
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~-~~~~~~-~ 78 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRP-ERAASS-I 78 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHCh-HhhhcC-E
Confidence 4699999999986 55688899999999999999988877765445567776443222 12222222110 111223 3
Q ss_pred EEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHH
Q psy210 318 VVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 318 vv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
++....+ ..+.. ..+...+.+.+.+ --+||+|+++.+..+
T Consensus 79 ~~~~~~~--~~~~~----~~~~~~~~~~~~~-~~lvvIDsi~~l~~~ 118 (218)
T cd01394 79 IVFEPMD--FNEQG----RAIQETETFADEK-VDLVVVDSATALYRL 118 (218)
T ss_pred EEEeCCC--HHHHH----HHHHHHHHHHhcC-CcEEEEechHHhhhH
Confidence 3333322 12221 1122222333334 458899999998654
No 172
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.42 E-value=0.0012 Score=70.11 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=48.6
Q ss_pred ccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHH
Q psy210 666 LETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGND 728 (915)
Q Consensus 666 l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e 728 (915)
+.|||.-+|-++. +-+|.-++|.|+||+|||+|+.+++.+...+ ..-++|+...+..+++.+
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~ 65 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIR 65 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHH
Confidence 5799999999875 6699999999999999999999998765432 345677766665555433
No 173
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=97.39 E-value=0.00011 Score=72.28 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRY 57 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~ 57 (915)
+..+++|+.+|++.+++|+|+|.++++++++++||||..++ ++++.+..+
T Consensus 78 ~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k----~~i~~alvE 127 (141)
T PRK09621 78 LSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGK----SFAAIGIVE 127 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH----HHHHHHHHH
Confidence 45689999999999999999999999999999999998777 566555443
No 174
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.38 E-value=0.00032 Score=78.45 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=76.3
Q ss_pred ccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-cc
Q psy210 239 EPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-MD 314 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~~ 314 (915)
+.+.||+..+|.++. +-+|.=+.|+|++|+|||+||++.+++....+-.|+|.-..+..+. .. .+.-|+ ++
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~--~~---a~~lGvd~~ 108 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VY---ARKLGVDID 108 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH--HH---HHHcCCCHH
Confidence 357899999999988 4469999999999999999999998886555666788866654443 12 333344 33
Q ss_pred eEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 315 YTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 315 ~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
+-+ ++ ..+ ..++ ++.+++.+.+.+.--+||+||++.+..
T Consensus 109 ~l~-v~-~p~--~~eq------~l~~~~~li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 109 NLL-VS-QPD--TGEQ------ALEIAETLVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred HeE-Ee-cCC--CHHH------HHHHHHHHhhccCCcEEEEcchhhhcc
Confidence 333 22 222 1233 456677766666666999999998774
No 175
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.38 E-value=0.0027 Score=67.38 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=45.9
Q ss_pred cccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEe
Q psy210 663 NNILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGV 719 (915)
Q Consensus 663 ~e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~i 719 (915)
++.+.||+.-+|-++ -+-+|.=..|.|+||+|||+++.+++.+..+. ..-++|+-.
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~ 59 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDT 59 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 456899999999998 46678899999999999999999999987654 344566643
No 176
>PRK09354 recA recombinase A; Provisional
Probab=97.37 E-value=0.00032 Score=79.11 Aligned_cols=111 Identities=21% Similarity=0.269 Sum_probs=79.9
Q ss_pred Cccccccceeeeccccc---cccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-c
Q psy210 238 NEPLLTGIKSIDSMIPI---GKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-M 313 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~pi---grGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 313 (915)
.+.+.||+..+|.++.+ -+|.=+.|+|++|+|||+||++.+++....+-.|+|.-..+..+. +. .+.-|+ +
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~--~~---a~~lGvdl 112 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VY---AKKLGVDI 112 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH--HH---HHHcCCCH
Confidence 44688999999999984 358888899999999999999999886556667889888776653 22 333344 3
Q ss_pred ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 314 ~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
++- +++ ..+ ..+ .++.+++.+.+.+.--+||+||++.+..
T Consensus 113 d~l-li~-qp~--~~E------q~l~i~~~li~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 113 DNL-LVS-QPD--TGE------QALEIADTLVRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred HHe-EEe-cCC--CHH------HHHHHHHHHhhcCCCCEEEEeChhhhcc
Confidence 443 222 222 133 3466777777667777999999998774
No 177
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.35 E-value=0.0037 Score=67.19 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=53.4
Q ss_pred cccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHH
Q psy210 665 ILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYH 731 (915)
Q Consensus 665 ~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~ 731 (915)
.+.|||.-+|-++. +-+|.-++|.|+||+|||+|+.+++.+..+ ..+-++|+...|.++++.+-.+
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHHHHHHH
Confidence 37899999999764 779999999999999999999999876543 2467899988887777655443
No 178
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.35 E-value=0.00089 Score=71.58 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=55.1
Q ss_pred Cccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccC
Q psy210 238 NEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYN 311 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~ 311 (915)
.+.+.|||..+|.++. +-+|.-+.|.|++|+|||+++.+.+.++...+-.|+|+...+..++ +++.+.+.|
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~---~~~~~~~~g 76 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKS---YLKQMESVK 76 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHH---HHHHHHHCC
Confidence 3568999999999986 4469999999999999999988887776445667889999777654 444444444
No 179
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.33 E-value=0.00091 Score=71.26 Aligned_cols=118 Identities=21% Similarity=0.261 Sum_probs=69.9
Q ss_pred ccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcC-----CcEEEEEEecC--CCchHHHHHHHhh--
Q psy210 666 LETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH-----KGCSVFIGVGE--RSREGNDFYHEMK-- 734 (915)
Q Consensus 666 l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~-----~~~~v~~~iGe--r~~ev~e~~~~~~-- 734 (915)
+.||++.+|-++. +-+|.-..|.|++|+|||+|+.+++.+..... ..-++|+-..+ +.+...++.+.+.
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 4799999999876 88999999999999999999999997654321 13456654333 1233333333211
Q ss_pred hcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHH
Q psy210 735 ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789 (915)
Q Consensus 735 ~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~ 789 (915)
.+..+++-.++ ...+. +.... .-..+-+.+.+.++--++++||++.+.+
T Consensus 81 ~~~~~~~i~~~-~~~~~---~~l~~--~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 81 PEEVLDNIYVA-RAYNS---DHQLQ--LLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred hHhHhcCEEEE-ecCCH---HHHHH--HHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 12345553333 22221 11111 1112223444443667899999998654
No 180
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.31 E-value=0.00031 Score=78.56 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=77.5
Q ss_pred Cccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-c
Q psy210 238 NEPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-M 313 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 313 (915)
.+.+.||+..+|.++. +-+|-=+.|+|++|+|||+||++.+++....+-.|+|.-..+..+. ++ ++.-|+ +
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~--~~---a~~lGvd~ 107 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDP--VY---AKKLGVDL 107 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHH--HH---HHHcCCCH
Confidence 3468899999999988 4458888899999999999999998886545556888877655442 22 333344 3
Q ss_pred ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 314 ~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
++ ++++ ..+. .+ .++.+++.+.+.+.-.+||+||++.+..
T Consensus 108 ~~-l~v~-~p~~--~e------q~l~i~~~li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 108 DN-LLIS-QPDT--GE------QALEIADSLVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred HH-heec-CCCC--HH------HHHHHHHHHHhccCCCEEEEcchHhhcc
Confidence 33 2222 2221 22 3566777777667777999999998774
No 181
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.31 E-value=0.0059 Score=66.59 Aligned_cols=69 Identities=25% Similarity=0.192 Sum_probs=52.4
Q ss_pred ccccccccceeeeccc-ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHH
Q psy210 662 NNNILETGIKVIDLLC-PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFY 730 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~-pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~ 730 (915)
+++-+.||+..+|-++ -+.+|+-+.|.|++|+|||+++.+++.+...++..-++|...-+...++...+
T Consensus 9 ~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 9 SNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred cccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHH
Confidence 3446789999999874 47789999999999999999999999987654334456666656555655544
No 182
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.29 E-value=0.00073 Score=75.57 Aligned_cols=110 Identities=24% Similarity=0.373 Sum_probs=73.8
Q ss_pred ccccccceeeecccc---cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc-c
Q psy210 664 NILETGIKVIDLLCP---FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV-L 739 (915)
Q Consensus 664 e~l~TGir~ID~l~p---igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~-~ 739 (915)
+.+.||+..+|.++. +-+|.=+.|+|++|+|||+|+.+++.+..+. ...++|+-.-+..+. ++.+.+ |+ +
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~~~~--~~a~~l---Gvd~ 107 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDP--VYARKL---GVDI 107 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccchhHH--HHHHHc---CCCH
Confidence 468999999999988 6688999999999999999999999887654 345666633222222 122222 32 2
Q ss_pred ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHH
Q psy210 740 DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789 (915)
Q Consensus 740 ~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~ 789 (915)
++ ++ +...+. .++ ++.+++.+...+.--+|++||++-+..
T Consensus 108 ~~-l~-v~~p~~--~eq------~l~~~~~li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 108 DN-LL-VSQPDT--GEQ------ALEIAETLVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred HH-eE-EecCCC--HHH------HHHHHHHHhhccCCcEEEEcchhhhcc
Confidence 33 23 333321 222 456677777777777899999997663
No 183
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.27 E-value=0.00096 Score=72.72 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=69.4
Q ss_pred ccccceeeeccc----------------cccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHH-HH
Q psy210 241 LLTGIKSIDSMI----------------PIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLI-NV 303 (915)
Q Consensus 241 l~TGi~aiD~l~----------------pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~-~~ 303 (915)
+.|||..+|.++ =+-+|.-..|.|++|+|||+++++.+.+....+-.|+|....+..+... .+
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l 83 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSL 83 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHH
Confidence 469999999986 2346999999999999999999998887654455678888876554322 23
Q ss_pred HHHHhccCC-----cceEEEEEecCCCCHHHhhhhhhhhhh-hHHHHHhcCCcEEEEeccchhH
Q psy210 304 INKLKYYNC-----MDYTVVVAATAADSAAEQYISPYTGCT-IGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 304 ~~~l~~~~~-----~~~tvvv~~~a~~~~~~r~~~~~~a~t-iAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
.+.....|. .++ +++....+. ...+ ..+..-+. +.+..++.+.+ +||+|+++.+
T Consensus 84 ~~~a~~~g~d~~~~~~~-l~~id~~~~-~~~~-~~~~~l~~~l~~~i~~~~~~-~vVIDSls~l 143 (259)
T TIGR03878 84 KERAKAMGVDFDKIEEN-IILIDAASS-TELR-ENVPNLLATLAYAIKEYKVK-NTVIDSITGL 143 (259)
T ss_pred HHHHHHcCCCHHHHhCC-EEEEECCCc-hhhh-hhHHHHHHHHHHHHHhhCCC-EEEEcCchHh
Confidence 333333332 223 333332221 1111 11111122 22223344666 7889999854
No 184
>PRK09354 recA recombinase A; Provisional
Probab=97.23 E-value=0.00085 Score=75.73 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=78.8
Q ss_pred cccccccceeeecccc---cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc-
Q psy210 663 NNILETGIKVIDLLCP---FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV- 738 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p---igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~- 738 (915)
.+.+.||+..+|.++. +-+|.=+.|+|++|+|||+|+.+++.+..+. ...++|+-.=+..+. ++.+.+ |+
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s~~~--~~a~~l---Gvd 111 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDP--VYAKKL---GVD 111 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchHH--HHHHHc---CCC
Confidence 4569999999999998 5577788899999999999999999887654 456777743332222 233333 22
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhh
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~ 796 (915)
+++ ++ +++.+ + .+ -++.+++.+...+.--+|++||++-+.. ..|+..
T Consensus 112 ld~-ll-i~qp~-~-~E------q~l~i~~~li~s~~~~lIVIDSvaaL~~-~~E~eg 158 (349)
T PRK09354 112 IDN-LL-VSQPD-T-GE------QALEIADTLVRSGAVDLIVVDSVAALVP-KAEIEG 158 (349)
T ss_pred HHH-eE-EecCC-C-HH------HHHHHHHHHhhcCCCCEEEEeChhhhcc-hhhhcC
Confidence 334 23 33332 1 22 3466777787778888999999997764 224443
No 185
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=97.23 E-value=0.00021 Score=71.76 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccc
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENS 44 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~ 44 (915)
+...+++|+++|++.+++|+|+|.++++++++++||||+..+
T Consensus 91 g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~~ 132 (159)
T PRK06558 91 GLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFTK 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 356799999999999999999999999999999999999986
No 186
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.23 E-value=0.0013 Score=70.64 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=53.5
Q ss_pred ccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHH
Q psy210 241 LLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN 305 (915)
Q Consensus 241 l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~ 305 (915)
+.|||..+|.++. +-+|.-++|.|++|+|||+++++.+.+....+-.|+|....+..+++.+-.+
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHH
Confidence 6799999999876 4469999999999999999999988876555667899999988776555443
No 187
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.23 E-value=0.00068 Score=75.90 Aligned_cols=111 Identities=24% Similarity=0.352 Sum_probs=75.3
Q ss_pred cccccccceeeecccc---cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc-
Q psy210 663 NNILETGIKVIDLLCP---FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV- 738 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p---igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~- 738 (915)
.+.+.||+..+|.++. +-+|-=+-|+|++|+|||+|+.+++.+.++. ...++|+-.=+... . ++.+.+ |+
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~~~~-~-~~a~~l---Gvd 106 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEHALD-P-VYAKKL---GVD 106 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccccHH-H-HHHHHc---CCC
Confidence 4479999999999988 6678888899999999999999999887654 34567763322111 1 223332 32
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~ 789 (915)
+++ ++ ++..+. . .-++.+++.+...+.--+|++||++-+..
T Consensus 107 ~~~-l~-v~~p~~--~------eq~l~i~~~li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 107 LDN-LL-ISQPDT--G------EQALEIADSLVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred HHH-he-ecCCCC--H------HHHHHHHHHHHhccCCCEEEEcchHhhcc
Confidence 233 23 333321 2 23566778887778788999999997764
No 188
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=97.19 E-value=0.00028 Score=74.21 Aligned_cols=42 Identities=26% Similarity=0.503 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCccccccc
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSL 45 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l 45 (915)
++..+++|+++|++++ +|+|+|+++++++|++|||||+.+++
T Consensus 145 g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~ 186 (213)
T PRK06271 145 TIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKG 186 (213)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhH
Confidence 4678999999999999 99999999999999999999999985
No 189
>PRK14893 V-type ATP synthase subunit K; Provisional
Probab=97.16 E-value=0.00025 Score=71.27 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
.+.+++++++|++++|+|+|+|+++++++++++||||+.++ ++++.+.-++
T Consensus 91 ~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~~----~li~~al~Et 141 (161)
T PRK14893 91 LVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFAR----GIIFSALPET 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH----HHHHHHHHHH
Confidence 56789999999999999999999999999999999998775 5665554433
No 190
>PRK06271 V-type ATP synthase subunit K; Validated
Probab=97.16 E-value=0.00027 Score=74.30 Aligned_cols=58 Identities=19% Similarity=0.356 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChhhhhhc
Q psy210 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIEDKIYK 67 (915)
Q Consensus 6 ~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~k~~~ 67 (915)
.+++++++|++++|+|+|+|.++++++++++||||+.++ ++++.+..+.-.|---++-
T Consensus 2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~----~li~~al~e~~~Iyglvia 59 (213)
T PRK06271 2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGT----AIVFQALPQTQGLYGFLVA 59 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999887 6887777777666665543
No 191
>PRK04328 hypothetical protein; Provisional
Probab=97.15 E-value=0.0019 Score=70.05 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=55.3
Q ss_pred cccccceeeecccccc--ccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHH
Q psy210 240 PLLTGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINK 306 (915)
Q Consensus 240 ~l~TGi~aiD~l~pig--rGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~ 306 (915)
.+.|||..+|.++.=| +|.-++|.|++|+|||+++++.+.+....+-.|+|....+..+++.+..+.
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHH
Confidence 4789999999997634 799999999999999999999988865556668999999988876554443
No 192
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.15 E-value=0.004 Score=66.23 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=49.0
Q ss_pred ccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHH
Q psy210 241 LLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINV 303 (915)
Q Consensus 241 l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~ 303 (915)
+.|||..+|.++. +-+|.-++|.|++|+|||+++++.+.+....+-.|+|....+..+++.+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~ 66 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQ 66 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHH
Confidence 5799999999875 45799999999999999999887766543334457888887777655433
No 193
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.15 E-value=0.0017 Score=68.86 Aligned_cols=57 Identities=26% Similarity=0.429 Sum_probs=47.3
Q ss_pred Cccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeec
Q psy210 238 NEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIG 294 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iG 294 (915)
++.+.||+..+|-++. +-+|.=..|.|++|+|||+++++...+....+-.|+|.-..
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5678999999999995 44598999999999999999998887765556667888766
No 194
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.14 E-value=0.0023 Score=67.75 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=39.1
Q ss_pred ccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 666 LETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 666 l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
+.||+..+|-++ -+-+|+-..|+|++|+|||+|+.+++.+....
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~ 46 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLP 46 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcc
Confidence 579999999987 48899999999999999999999999887543
No 195
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.11 E-value=0.0014 Score=73.28 Aligned_cols=120 Identities=22% Similarity=0.244 Sum_probs=75.8
Q ss_pred cccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhc-----CCcEEEEEEecC--CCchHHHHHHHhhh
Q psy210 665 ILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIE-----HKGCSVFIGVGE--RSREGNDFYHEMKE 735 (915)
Q Consensus 665 ~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~-----~~~~~v~~~iGe--r~~ev~e~~~~~~~ 735 (915)
.+.||++.+|.++- +-+|.=..|+|+||+|||+++.+++.+.... ...-+||+-.-+ +++.+.++.+.+.-
T Consensus 76 ~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl 155 (310)
T TIGR02236 76 KITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGL 155 (310)
T ss_pred eecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 47788888998876 6688999999999999999999999886531 123678886666 45555555543311
Q ss_pred --cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcE-EEEecchhhHHHh
Q psy210 736 --SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDV-LLFIDNIYRFTLA 790 (915)
Q Consensus 736 --~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~V-l~~~Ds~tr~a~A 790 (915)
...+++ +.++...+..+ +. ...-.+.+.+.+.+.++ +|++||++-+-+.
T Consensus 156 ~~~~~~~~-i~i~~~~~~~~--~~---~lld~l~~~i~~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 156 DPDEVLKN-IYVARAYNSNH--QM---LLVEKAEDLIKELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred CHHHHhhc-eEEEecCCHHH--HH---HHHHHHHHHHHhcCCCceEEEEecchHhhhH
Confidence 113444 33333332222 11 12234566666644333 8999999976443
No 196
>KOG3025|consensus
Probab=97.09 E-value=6.8e-05 Score=69.13 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
.++|+||++- ++..|+|+|+|.++++.+.+.+|||....++|...|+|.++.+.
T Consensus 68 ak~igag~at-vgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea 121 (137)
T KOG3025|consen 68 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 121 (137)
T ss_pred HHHhccchhh-hccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 5788998884 89999999999999999999999999999999999997766543
No 197
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.08 E-value=0.0017 Score=69.12 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=69.1
Q ss_pred ccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCC------CeEEEEEeeccc--hhhHHHHHHHHh--
Q psy210 241 LLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNK------NVICIYVCIGQK--ISSLINVINKLK-- 308 (915)
Q Consensus 241 l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~------~~~~V~~~iGer--~~ev~~~~~~l~-- 308 (915)
+.||++.+|.++. +-+|.-..|.|++|+|||+++++.+++.... +-.|+|.-..+. .+...++.+.+.
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 4699999999876 6679999999999999999988887663221 245777766553 233333332211
Q ss_pred ccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 309 YYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 309 ~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
...++++..++.... .+...... ..+-+.+.+.+.--+||+|+++.+.+
T Consensus 81 ~~~~~~~i~~~~~~~----~~~l~~~l--~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 81 PEEVLDNIYVARAYN----SDHQLQLL--EELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred hHhHhcCEEEEecCC----HHHHHHHH--HHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 122344544332211 11111110 11223444443566999999998754
No 198
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.03 E-value=0.0027 Score=67.16 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=43.6
Q ss_pred ccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCC------eEEEEEeecc
Q psy210 241 LLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKN------VICIYVCIGQ 295 (915)
Q Consensus 241 l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~------~~~V~~~iGe 295 (915)
+.||+..+|.++. +-+|+-..|.|++|+|||+++++.+.+....+ ..|+|.....
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 4699999999875 66799999999999999999888777653333 5677776544
No 199
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.01 E-value=0.0021 Score=71.73 Aligned_cols=119 Identities=19% Similarity=0.258 Sum_probs=75.0
Q ss_pred cccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcC------CCeEEEEEeecc--chhhHHHHHHHHhc
Q psy210 240 PLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKN------KNVICIYVCIGQ--KISSLINVINKLKY 309 (915)
Q Consensus 240 ~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~------~~~~~V~~~iGe--r~~ev~~~~~~l~~ 309 (915)
.+.||+..+|.++. +-+|.-+.|+|++|+|||+++++...+... .+..|||.-..+ +.+.+.++.+.+.-
T Consensus 76 ~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl 155 (310)
T TIGR02236 76 KITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGL 155 (310)
T ss_pred eecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 46799999999876 556999999999999999999988777421 233789999888 45555555544321
Q ss_pred c--CCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCC-cEEEEeccchhHHHH
Q psy210 310 Y--NCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQ-DCLIIYDDLTKHAWA 364 (915)
Q Consensus 310 ~--~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~-~Vlv~~Ddltr~a~A 364 (915)
. ..+++..++.....+ .+.. .--.+.+++.+.+. --+||+||++-+-+.
T Consensus 156 ~~~~~~~~i~i~~~~~~~---~~~~---lld~l~~~i~~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 156 DPDEVLKNIYVARAYNSN---HQML---LVEKAEDLIKELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred CHHHHhhceEEEecCCHH---HHHH---HHHHHHHHHHhcCCCceEEEEecchHhhhH
Confidence 1 123443333322211 1211 11235566665442 238999999987543
No 200
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.98 E-value=0.016 Score=62.13 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=44.4
Q ss_pred cccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHH
Q psy210 667 ETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYH 731 (915)
Q Consensus 667 ~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~ 731 (915)
.+++.-+|-++. +-+|..++|.|++|+|||+|+.+++.+..++ ..-++|+...|.+++..+...
T Consensus 7 ~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 7 ELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred EEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHH
Confidence 344555555443 6779999999999999999987777765433 245677777776666544443
No 201
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.94 E-value=0.015 Score=59.45 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=79.8
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhh-------hcCccccEEEEEE-cCCCChHhH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMK-------ESNVLDKVSLIYG-QMNEPSGNR 756 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~-------~~~~~~~~~vv~~-t~d~~~~~r 756 (915)
+.|.|+||+|||+|+.+++.+..++ ..-++|+..-|..+++.+..+.+. +.+. ..++-. ....+....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~---l~~~d~~~~~~s~~~~ 77 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIENAESLGWDLERLEDEGL---LAIVDADPDEIGPAES 77 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCC---eEEEecCccccchhhh
Confidence 4789999999999999999977654 345677777777777655444331 1111 111111 111122221
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEE
Q psy210 757 LRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAI 836 (915)
Q Consensus 757 ~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v 836 (915)
.........+ .....+.+--++++|+++-+... . ....-..+.+++....+. | +|++-+.
T Consensus 78 ~~~~~~~~~i-~~~~~~~~~~~lviD~~~~~~~~--------~--------~~~~~~~i~~l~~~l~~~--g-~tvi~v~ 137 (187)
T cd01124 78 SLRLELIQRL-KDAIEEFKAKRVVIDSVSGLLLM--------E--------QSTARLEIRRLLFALKRF--G-VTTLLTS 137 (187)
T ss_pred hhhHHHHHHH-HHHHHHhCCCEEEEeCcHHHhhc--------C--------hHHHHHHHHHHHHHHHHC--C-CEEEEEe
Confidence 1000111122 22222334457888999976543 0 011222344444443322 3 4655554
Q ss_pred EecCCCCCCCcccccccccCcEEEeeHH
Q psy210 837 YVPADDLTDPSPSTTFTHLDSTIVLSRQ 864 (915)
Q Consensus 837 ~~~~~d~~dpi~~~~~~i~dg~ivLsr~ 864 (915)
......-..........+.|+.|.|++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~aD~ii~l~~~ 165 (187)
T cd01124 138 EQSGLEGTGFGGGDVEYLVDGVIRLRLD 165 (187)
T ss_pred ccccCCCcccCcCceeEeeeEEEEEEEE
Confidence 3332211112233567788999999877
No 202
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.93 E-value=0.009 Score=64.02 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=48.9
Q ss_pred ccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHH
Q psy210 241 LLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN 305 (915)
Q Consensus 241 l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~ 305 (915)
+.|++..+|-+.. +-+|..++|.|++|+|||+++++.+.+....+..++|....+..++..+..+
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 4566777777665 3459999999999999999988888876444556788888887766555443
No 203
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.91 E-value=0.0059 Score=66.58 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=52.1
Q ss_pred Cccccccceeeecccc-ccccceeeeecCCCCChhHHHHHHHHhhcCC-CeEEEEEeeccchhhHHHHHH
Q psy210 238 NEPLLTGIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTIINQKNK-NVICIYVCIGQKISSLINVIN 305 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p-igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~ 305 (915)
++-+.||+..+|.++- +.+|+-..|.|++|+|||+++++...+.... +..++|....+..+++...+.
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH
Confidence 3467799999999863 3459999999999999999988877765433 556778888887776665543
No 204
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.91 E-value=0.0045 Score=70.10 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=75.1
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhc-----CCcEEEEEEecC--CCchHHHHHHHhh
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIE-----HKGCSVFIGVGE--RSREGNDFYHEMK 734 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~-----~~~~~v~~~iGe--r~~ev~e~~~~~~ 734 (915)
..+.||++.+|-++- +-+|.=.-|+|++|+|||+|+.+++.+.... ...-++|+-.-+ +++.+.+..+.+.
T Consensus 106 ~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g 185 (344)
T PLN03187 106 VRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (344)
T ss_pred ceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999976 6688889999999999999999998765421 013567775544 5666666655442
Q ss_pred h--cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHh
Q psy210 735 E--SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 735 ~--~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A 790 (915)
- ..++++ +.+ .... ...+.... ...+.+.+.+.+- =||++||++-+-++
T Consensus 186 ~d~~~~l~~-I~~-~~~~-~~e~~~~~---l~~l~~~i~~~~~-~LvVIDSital~r~ 236 (344)
T PLN03187 186 MDADAVLDN-IIY-ARAY-TYEHQYNL---LLGLAAKMAEEPF-RLLIVDSVIALFRV 236 (344)
T ss_pred CChhhhcCe-EEE-ecCC-CHHHHHHH---HHHHHHHHHhcCC-CEEEEeCcHHhhhc
Confidence 1 234555 332 2222 22222211 2233344555444 46789999987553
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.90 E-value=0.0031 Score=59.51 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=53.8
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhhcCCC-eEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhh
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQKNKN-VICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISP 334 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~~~~~-~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~ 334 (915)
+|+.+.|+|++|+|||++ +..++++.... ..++|+-+..... ...+... ......+.....+....
T Consensus 1 ~~~~~~l~G~~G~GKTtl-~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~ 67 (148)
T smart00382 1 PGEVILIVGPPGSGKTTL-ARALARELGPPGGGVIYIDGEDILE-EVLDQLL-----------LIIVGGKKASGSGELRL 67 (148)
T ss_pred CCCEEEEECCCCCcHHHH-HHHHHhccCCCCCCEEEECCEEccc-cCHHHHH-----------hhhhhccCCCCCHHHHH
Confidence 367899999999999999 56666653322 1234444443322 2222111 01111122223333334
Q ss_pred hhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhh
Q psy210 335 YTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLL 371 (915)
Q Consensus 335 ~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~ 371 (915)
...++.|++.. ..++++|++.++..........
T Consensus 68 ~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 68 RLALALARKLK----PDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred HHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHH
Confidence 44455555433 5899999999988766555443
No 206
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.89 E-value=0.0086 Score=70.49 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=46.2
Q ss_pred ccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC
Q psy210 664 NILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE 721 (915)
Q Consensus 664 e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe 721 (915)
+.+.|||.-+|-++ -+.+|+=++|.|+||+|||+|+.+++.+..+++ .-++|+. +|
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs-~E 131 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVS-GE 131 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEE-Cc
Confidence 45899999999997 489999999999999999999999999876542 3356664 44
No 207
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.86 E-value=0.0034 Score=77.44 Aligned_cols=119 Identities=22% Similarity=0.343 Sum_probs=77.5
Q ss_pred cccccccceeeecccc---cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCcc
Q psy210 663 NNILETGIKVIDLLCP---FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVL 739 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p---igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~ 739 (915)
.+.+.||+..+|.++. +-+|.=..|+|++|+|||+|+.+++.+..+. ...++|+---+..+ .+..+.+ |+-
T Consensus 38 v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~-G~~v~yId~E~t~~--~~~A~~l---GvD 111 (790)
T PRK09519 38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGVAAFIDAEHALD--PDYAKKL---GVD 111 (790)
T ss_pred CceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchh--HHHHHHc---CCC
Confidence 3478999999999987 6689999999999999999999988876543 35567774333333 1222333 332
Q ss_pred ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhh
Q psy210 740 DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAM 797 (915)
Q Consensus 740 ~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~ 797 (915)
-..++ +...+ +.++ ++.+++.+..++.=-||++||++-+.. ..|+...
T Consensus 112 l~~ll-v~~~~--~~E~------~l~~i~~lv~~~~~~LVVIDSI~aL~~-r~E~~g~ 159 (790)
T PRK09519 112 TDSLL-VSQPD--TGEQ------ALEIADMLIRSGALDIVVIDSVAALVP-RAELEGE 159 (790)
T ss_pred hhHeE-EecCC--CHHH------HHHHHHHHhhcCCCeEEEEcchhhhcc-hhhccCC
Confidence 12223 33322 2233 455566666677777899999997764 2354443
No 208
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.85 E-value=0.0077 Score=63.05 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=60.6
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC-CCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE-RSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL 757 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe-r~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~ 757 (915)
+-+|+=..|+|+||+|||+++.+++.+...+ ..-++|+-.-+ .++.+.+..+...+ ..+++ ++++... ++.+..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~~~~~rl~~~~~~~~~-~~~~~-i~~~~~~--~~~~~~ 83 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEGLSPERFKQIAEDRPE-RALSN-FIVFEVF--DFDEQG 83 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCCHHHHHHHHHhChH-HHhcC-EEEEECC--CHHHHH
Confidence 5679999999999999999999999887654 34567775543 44444443332211 12344 3333332 222221
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEecchhhHHHh
Q psy210 758 RVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 758 ~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A 790 (915)
. ....+.+.+.+.+.+ +|++||++.+.++
T Consensus 84 ~---~~~~l~~~~~~~~~~-lvVIDSis~l~~~ 112 (209)
T TIGR02237 84 V---AIQKTSKFIDRDSAS-LVVVDSFTALYRL 112 (209)
T ss_pred H---HHHHHHHHHhhcCcc-EEEEeCcHHHhHH
Confidence 1 122334444444444 6777999987654
No 209
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.79 E-value=0.022 Score=60.44 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=91.9
Q ss_pred cceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh--cCccccEEE
Q psy210 669 GIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE--SNVLDKVSL 744 (915)
Q Consensus 669 Gir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~--~~~~~~~~v 744 (915)
||+-+|-++ -+-+|.-+.|.|+||+|||+++.+++.+..++ ..-++|+..-+..+++.+-.+.+.- .+..++.+.
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~ 79 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLY 79 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeE
Confidence 556666665 35589999999999999999999999876543 4567888888877666555444321 111222233
Q ss_pred EEEcCCCChHhHHHHHHHHH-HHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhc
Q psy210 745 IYGQMNEPSGNRLRVALTGL-SIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823 (915)
Q Consensus 745 v~~t~d~~~~~r~~~~~~a~-~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag 823 (915)
+... ++.........-. .+.......+.+ ++++||++-+-. .. +.+...-..+..++....
T Consensus 80 ~~~~---~~~~~~~~~~~l~~~~~~~i~~~~~~-~vVIDsls~l~~-------~~-------~~~~~~r~~l~~l~~~lk 141 (224)
T TIGR03880 80 IVRL---DPSDFKTSLNRIKNELPILIKELGAS-RVVIDPISLLET-------LF-------DDDAERRTELFRFYSSLR 141 (224)
T ss_pred EEec---CHHHHHhhHHHHHHHHHHHHHHhCCC-EEEEcChHHHhh-------hc-------CCHHHHHHHHHHHHHHHH
Confidence 3322 2221111111111 222223334666 456999996511 00 112222234455555443
Q ss_pred CCCCCceeEEEEEEecCCCCCCCc-ccccccccCcEEEeeHH
Q psy210 824 STKNGTITSVQAIYVPADDLTDPS-PSTTFTHLDSTIVLSRQ 864 (915)
Q Consensus 824 ~~~~GSiT~i~~v~~~~~d~~dpi-~~~~~~i~dg~ivLsr~ 864 (915)
+ . -+|++.+......+. ..- ...+..+.|+-|+|+..
T Consensus 142 ~--~-~~tvll~s~~~~~~~-~~~~~~~~~~l~D~vI~L~~~ 179 (224)
T TIGR03880 142 E--T-GVTTILTSEADKTNV-FASKYGLIEYLADGVIILKYV 179 (224)
T ss_pred h--C-CCEEEEEEcccCCCC-CccCCCceEEEEeEEEEEeee
Confidence 2 2 246666654432110 011 12356777999999633
No 210
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.77 E-value=0.0054 Score=64.17 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=60.4
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeecc-chhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhh
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQ-KISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYIS 333 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGe-r~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~ 333 (915)
-+|+=..|.|++|+|||+++++...+....+-.|+|.-..+ ..+.+.+..+... ...+++-++ ... . ++.+...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~-~~~~~~i~~-~~~-~-~~~~~~~- 84 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRP-ERALSNFIV-FEV-F-DFDEQGV- 84 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCh-HHHhcCEEE-EEC-C-CHHHHHH-
Confidence 35899999999999999999988877655566688888875 4444444433221 112344333 222 1 1111111
Q ss_pred hhhhhhhHHHHHhcCCcEEEEeccchhHHHH
Q psy210 334 PYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 334 ~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
.-..+.+.+.+.+.+ +||+||++.+.++
T Consensus 85 --~~~~l~~~~~~~~~~-lvVIDSis~l~~~ 112 (209)
T TIGR02237 85 --AIQKTSKFIDRDSAS-LVVVDSFTALYRL 112 (209)
T ss_pred --HHHHHHHHHhhcCcc-EEEEeCcHHHhHH
Confidence 112234444444444 7888999998654
No 211
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.75 E-value=0.0079 Score=70.81 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=68.3
Q ss_pred cccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEE
Q psy210 240 PLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTV 317 (915)
Q Consensus 240 ~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tv 317 (915)
.+.|||..+|.++. +.+|+-++|.|++|+|||+|+++...+....+-.++|....|..+. +..+...-+.....+
T Consensus 75 ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~q---i~~ra~rlg~~~~~l 151 (454)
T TIGR00416 75 RFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQ---IKMRAIRLGLPEPNL 151 (454)
T ss_pred ccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHH---HHHHHHHcCCChHHe
Confidence 58899999999985 7779999999999999999988877765444345778876665543 333333334322222
Q ss_pred EEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhH
Q psy210 318 VVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 318 vv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
.+.... .. -.+.+.+.+.+.+ +||+|+++.+
T Consensus 152 ~~~~e~---~~---------~~I~~~i~~~~~~-~vVIDSIq~l 182 (454)
T TIGR00416 152 YVLSET---NW---------EQICANIEEENPQ-ACVIDSIQTL 182 (454)
T ss_pred EEcCCC---CH---------HHHHHHHHhcCCc-EEEEecchhh
Confidence 222211 11 1233333444554 7999999875
No 212
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.75 E-value=0.0041 Score=69.70 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=75.0
Q ss_pred Cccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhc------CCCeEEEEEeecc--chhhHHHHHHHH
Q psy210 238 NEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQK------NKNVICIYVCIGQ--KISSLINVINKL 307 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~------~~~~~~V~~~iGe--r~~ev~~~~~~l 307 (915)
...+.||+..+|.++- +-+|.=..|+|++|+|||+++++...+.. ..+..|+|.-..+ +.+.+.++.+.+
T Consensus 75 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 75 VLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 3468899999999976 45699999999999999999988776532 2345688988777 356666665554
Q ss_pred hc--cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHH
Q psy210 308 KY--YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 308 ~~--~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
.- ..++++ +.+ ..... ...+.. .-..+.+.+.+.+.+ |||+||++.+-++
T Consensus 155 g~d~~~~l~~-i~~-~~~~~-~e~~~~---~l~~l~~~i~~~~~~-LvVIDSisal~r~ 206 (313)
T TIGR02238 155 GVDPDAVLDN-ILY-ARAYT-SEHQME---LLDYLAAKFSEEPFR-LLIVDSIMALFRV 206 (313)
T ss_pred CCChHHhcCc-EEE-ecCCC-HHHHHH---HHHHHHHHhhccCCC-EEEEEcchHhhhh
Confidence 22 122444 222 22111 112211 112334445544455 7999999987543
No 213
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.74 E-value=0.007 Score=67.83 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=73.6
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhc-----CCcEEEEEEecC--CCchHHHHHHHhh
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIE-----HKGCSVFIGVGE--RSREGNDFYHEMK 734 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~-----~~~~~v~~~iGe--r~~ev~e~~~~~~ 734 (915)
..+.||++.+|-++- +-+|.=..|+|++|+|||+|+.+++.+.... ...-++|+-.-+ +++.+.++.+.+.
T Consensus 76 ~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g 155 (313)
T TIGR02238 76 LKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFG 155 (313)
T ss_pred ceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358899999999875 7789999999999999999999998765421 123567774433 3555555554432
Q ss_pred h--cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHh
Q psy210 735 E--SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 735 ~--~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A 790 (915)
- +..+++ +.++...+ ..+... ....+.+.+.+.+.+ ||++||++-+-++
T Consensus 156 ~d~~~~l~~-i~~~~~~~--~e~~~~---~l~~l~~~i~~~~~~-LvVIDSisal~r~ 206 (313)
T TIGR02238 156 VDPDAVLDN-ILYARAYT--SEHQME---LLDYLAAKFSEEPFR-LLIVDSIMALFRV 206 (313)
T ss_pred CChHHhcCc-EEEecCCC--HHHHHH---HHHHHHHHhhccCCC-EEEEEcchHhhhh
Confidence 1 234555 33322211 222211 123344455554444 6899999976543
No 214
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.70 E-value=0.0063 Score=68.32 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=72.8
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcC-----CcEEEEEEecC--CCchHHHHHHHhh
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH-----KGCSVFIGVGE--RSREGNDFYHEMK 734 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~-----~~~~v~~~iGe--r~~ev~e~~~~~~ 734 (915)
..+.||+.-+|-++. +-+|.=..|+|++|+|||+++.+++.+..... ..-++|+-.-+ +++.+.+..+.+.
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 347888888888765 77899999999999999999999998764321 13577876655 3455555544332
Q ss_pred h--cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcE-EEEecchhhHHHh
Q psy210 735 E--SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDV-LLFIDNIYRFTLA 790 (915)
Q Consensus 735 ~--~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~V-l~~~Ds~tr~a~A 790 (915)
. +..+++ +.++... +..++.. .+...+.+..++.++ +|++||++-+-++
T Consensus 162 ~~~~~~l~~-i~~~~~~--~~~~~~~----~~~~l~~~i~~~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 162 LDPDEVLDN-IHVARAY--NSDHQML----LAEKAEELIKEGENIKLVIVDSLTAHFRA 213 (317)
T ss_pred CChHhhhcc-EEEEeCC--CHHHHHH----HHHHHHHHHhccCceeEEEEECchHHhhh
Confidence 1 233455 3333221 1222211 122223333333334 8999999976543
No 215
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.63 E-value=0.0037 Score=77.08 Aligned_cols=109 Identities=18% Similarity=0.300 Sum_probs=76.6
Q ss_pred ccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-cc
Q psy210 239 EPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-MD 314 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~~ 314 (915)
..+.||+..+|.++. +-+|.-+.|+|++|+|||+|+++.+++....+-.|+|.-..+..+. +..+.-|+ ++
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~ 113 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP-----DYAKKLGVDTD 113 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhH-----HHHHHcCCChh
Confidence 367899999999988 4469999999999999999999988876555666888887776662 23444455 33
Q ss_pred eEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 315 YTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 315 ~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
+. +++ ..+ +.++ ++.+++.+.+.+.--|||+||++.+.
T Consensus 114 ~l-lv~-~~~--~~E~------~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 114 SL-LVS-QPD--TGEQ------ALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred He-EEe-cCC--CHHH------HHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 33 322 222 2233 45556665555666789999999776
No 216
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.60 E-value=0.0092 Score=66.99 Aligned_cols=119 Identities=20% Similarity=0.232 Sum_probs=72.8
Q ss_pred ccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcC------CCeEEEEEeecc--chhhHHHHHHHHh
Q psy210 239 EPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKN------KNVICIYVCIGQ--KISSLINVINKLK 308 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~------~~~~~V~~~iGe--r~~ev~~~~~~l~ 308 (915)
..+.||+..+|-++. +-+|.-..|+|++|+|||+++++.+.+... .+..++|.-..+ +.+.+.+..+.+.
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 357899999999876 557999999999999999999998877321 234688998887 4555555554432
Q ss_pred c--cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 309 Y--YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 309 ~--~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
. ...+++..++ ...+ ..++.. .--.+.+.+.+...-=|||+||++-+-+
T Consensus 162 ~~~~~~l~~i~~~--~~~~-~~~~~~---~~~~l~~~i~~~~~~~lvVIDSisa~~~ 212 (317)
T PRK04301 162 LDPDEVLDNIHVA--RAYN-SDHQML---LAEKAEELIKEGENIKLVIVDSLTAHFR 212 (317)
T ss_pred CChHhhhccEEEE--eCCC-HHHHHH---HHHHHHHHHhccCceeEEEEECchHHhh
Confidence 1 1224443332 2221 122211 1112333333312223899999998754
No 217
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.54 E-value=0.023 Score=66.82 Aligned_cols=107 Identities=19% Similarity=0.295 Sum_probs=66.5
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc-cc
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV-LD 740 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~-~~ 740 (915)
+.+.|||.-+|-++. +.+|+=+.|.|+||+|||+|+.+++.+..++ ..-++|+.--|..+. +......-+. .+
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~q---i~~ra~rlg~~~~ 135 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQ---IKLRAERLGLPSD 135 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHH---HHHHHHHcCCChh
Confidence 458999999999875 7789999999999999999999999987643 234566643333333 3322322232 22
Q ss_pred cEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 741 KVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 741 ~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
+ +.+....+ .++ +-+.+. +.+--++++||++.+.
T Consensus 136 ~-l~~~~e~~---l~~---------i~~~i~-~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 136 N-LYLLAETN---LEA---------ILATIE-EEKPDLVVIDSIQTMY 169 (446)
T ss_pred c-EEEeCCCC---HHH---------HHHHHH-hhCCCEEEEechhhhc
Confidence 3 33332211 122 112232 3445578999999753
No 218
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.48 E-value=0.011 Score=67.00 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=76.8
Q ss_pred Cccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhh-c-----CCCeEEEEEeecc--chhhHHHHHHHH
Q psy210 238 NEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQ-K-----NKNVICIYVCIGQ--KISSLINVINKL 307 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~-~-----~~~~~~V~~~iGe--r~~ev~~~~~~l 307 (915)
...+.||++.+|.++- +-.|.=.-|+|++|+|||+|+++..++. . ..+..++|.-..+ +.+.+.+..+.+
T Consensus 105 ~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~ 184 (344)
T PLN03187 105 VVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (344)
T ss_pred CceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHc
Confidence 4468899999999977 3468889999999999999998886653 2 2245788998877 566666666654
Q ss_pred hc--cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHH
Q psy210 308 KY--YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 308 ~~--~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
.- ..++++.. +....+ ..++... -..+.+.+.+.+.+ |||+||++-+-++
T Consensus 185 g~d~~~~l~~I~--~~~~~~-~e~~~~~---l~~l~~~i~~~~~~-LvVIDSital~r~ 236 (344)
T PLN03187 185 GMDADAVLDNII--YARAYT-YEHQYNL---LLGLAAKMAEEPFR-LLIVDSVIALFRV 236 (344)
T ss_pred CCChhhhcCeEE--EecCCC-HHHHHHH---HHHHHHHHHhcCCC-EEEEeCcHHhhhc
Confidence 22 12345522 222222 2222111 12233445554555 7899999987543
No 219
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.46 E-value=0.003 Score=70.65 Aligned_cols=120 Identities=20% Similarity=0.278 Sum_probs=74.7
Q ss_pred ccccccceeeecccccc---ccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-cc
Q psy210 239 EPLLTGIKSIDSMIPIG---KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-MD 314 (915)
Q Consensus 239 ~~l~TGi~aiD~l~pig---rGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~~ 314 (915)
+.+.||+.++|..++.| +|.=+=|+|++++|||+|++..+++....+..|+|.-..... -.++ +..-|+ ++
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~l--d~~~---a~~lGvdl~ 106 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHAL--DPEY---AESLGVDLD 106 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS-----HHH---HHHTT--GG
T ss_pred ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccc--hhhH---HHhcCcccc
Confidence 57899999999999854 477778999999999999999999865557677777654322 1233 334466 66
Q ss_pred eEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCC
Q psy210 315 YTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRR 374 (915)
Q Consensus 315 ~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~ 374 (915)
+-++ +-+ + + . ..|+.++|.+.+.|.-.+||+||+...+-- .|+-..+++
T Consensus 107 rllv-~~P-~-~-~------E~al~~~e~lirsg~~~lVVvDSv~al~p~-~E~e~~~~~ 155 (322)
T PF00154_consen 107 RLLV-VQP-D-T-G------EQALWIAEQLIRSGAVDLVVVDSVAALVPK-AELEGEIGD 155 (322)
T ss_dssp GEEE-EE--S-S-H------HHHHHHHHHHHHTTSESEEEEE-CTT-B-H-HHHTTSTSS
T ss_pred ceEE-ecC-C-c-H------HHHHHHHHHHhhcccccEEEEecCcccCCH-HHHhhcccc
Confidence 6443 332 1 1 2 246889998887777668999998876432 244444443
No 220
>PRK06558 V-type ATP synthase subunit K; Validated
Probab=96.41 E-value=0.0025 Score=64.10 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCccccccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSL 45 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l 45 (915)
+..+++++++|++++|+++|+|.++++++++++||||..++.
T Consensus 16 ~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~ 57 (159)
T PRK06558 16 FAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKA 57 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 457899999999999999999999999999999999999885
No 221
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.38 E-value=0.018 Score=66.07 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=67.6
Q ss_pred ccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceE
Q psy210 239 EPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYT 316 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t 316 (915)
+.+.|||..+|.++- +.+|+-++|.|++|+|||+|+++...+....+-.++|....+..+. +..+...-+.....
T Consensus 62 ~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~q---i~~Ra~rlg~~~~~ 138 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQ---IKLRADRLGISTEN 138 (372)
T ss_pred CccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHH---HHHHHHHcCCCccc
Confidence 368899999999985 7779999999999999999988777665444445677765554443 33333333432222
Q ss_pred EEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 317 VVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 317 vvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
+.+.... -.+ .+-+.+.+. +--+||+|+++.+.
T Consensus 139 l~l~~e~---~le---------~I~~~i~~~-~~~lVVIDSIq~l~ 171 (372)
T cd01121 139 LYLLAET---NLE---------DILASIEEL-KPDLVIIDSIQTVY 171 (372)
T ss_pred EEEEccC---cHH---------HHHHHHHhc-CCcEEEEcchHHhh
Confidence 2222211 111 122333333 34578999998764
No 222
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.24 E-value=0.043 Score=58.21 Aligned_cols=63 Identities=21% Similarity=0.445 Sum_probs=48.5
Q ss_pred cceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHH
Q psy210 244 GIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINK 306 (915)
Q Consensus 244 Gi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~ 306 (915)
||..+|-++. +-+|.-++|.|++|+|||+++++.+.+....+-.|+|....+..+++.+-.+.
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~ 65 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKS 65 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH
Confidence 6777788764 33699999999999999999999988764446568899998877655554443
No 223
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.22 E-value=0.017 Score=66.30 Aligned_cols=57 Identities=25% Similarity=0.482 Sum_probs=45.8
Q ss_pred cccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC
Q psy210 663 NNILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE 721 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe 721 (915)
.+.+.|||.-+|-++- +.+|+=++|.|+||+|||+|+.+++.+..++. .-++|+. ||
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs-~E 119 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVS-GE 119 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEE-CC
Confidence 3468999999999874 88999999999999999999999999876542 3345543 44
No 224
>PTZ00035 Rad51 protein; Provisional
Probab=96.19 E-value=0.014 Score=66.05 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=71.0
Q ss_pred cccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhc-----CCcEEEEEEecC--CCchHHHHHHHh
Q psy210 663 NNILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIE-----HKGCSVFIGVGE--RSREGNDFYHEM 733 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~-----~~~~~v~~~iGe--r~~ev~e~~~~~ 733 (915)
...+.||++.+|-++- +-+|.=..|+|++|+|||+|+.+++.+.... ...-++|+---+ +++.+.++.+.+
T Consensus 97 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~ 176 (337)
T PTZ00035 97 IIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERF 176 (337)
T ss_pred CccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHh
Confidence 3568999999999874 6689999999999999999999998765420 123455653221 244455554432
Q ss_pred h--hcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHH
Q psy210 734 K--ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789 (915)
Q Consensus 734 ~--~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~ 789 (915)
. ...++++ +.++...+ +.+.... -..+.+.+.+ ++--||++||++-+-+
T Consensus 177 g~~~~~~l~n-I~~~~~~~--~e~~~~~---l~~~~~~l~~-~~~~lvVIDSital~r 227 (337)
T PTZ00035 177 GLDPEDVLDN-IAYARAYN--HEHQMQL---LSQAAAKMAE-ERFALLIVDSATALFR 227 (337)
T ss_pred CCChHhHhhc-eEEEccCC--HHHHHHH---HHHHHHHhhc-cCccEEEEECcHHhhh
Confidence 1 1234455 23332222 1222111 1223334433 4556889999997644
No 225
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.11 E-value=0.02 Score=67.38 Aligned_cols=106 Identities=20% Similarity=0.245 Sum_probs=68.5
Q ss_pred cccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-cceE
Q psy210 240 PLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-MDYT 316 (915)
Q Consensus 240 ~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~~~t 316 (915)
.+.|||..+|.++. +.+|+-++|.|++|+|||+|+++...+....+-.++|....+..+.+. ++...-+. .++
T Consensus 61 ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~---~ra~rlg~~~~~- 136 (446)
T PRK11823 61 RISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK---LRAERLGLPSDN- 136 (446)
T ss_pred cccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH---HHHHHcCCChhc-
Confidence 57899999999976 667999999999999999998888776654455678887666555443 33333333 233
Q ss_pred EEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 317 VVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 317 vvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
+.+....+ .+ .+-+.+.+ .+--+||+|+++.+.
T Consensus 137 l~~~~e~~---l~---------~i~~~i~~-~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 137 LYLLAETN---LE---------AILATIEE-EKPDLVVIDSIQTMY 169 (446)
T ss_pred EEEeCCCC---HH---------HHHHHHHh-hCCCEEEEechhhhc
Confidence 32222111 11 12223333 344589999998774
No 226
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.01 E-value=0.071 Score=50.74 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.+.-+.|.|++|+|||+|+..+++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 366799999999999999999998764
No 227
>PF05729 NACHT: NACHT domain
Probab=95.98 E-value=0.019 Score=56.76 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=50.3
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCC-----cEEEEEEecCCCchHH--HHHHHhhhcCccccEEEEEEcCCCChHhH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHK-----GCSVFIGVGERSREGN--DFYHEMKESNVLDKVSLIYGQMNEPSGNR 756 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~-----~~~v~~~iGer~~ev~--e~~~~~~~~~~~~~~~vv~~t~d~~~~~r 756 (915)
.+.|.|++|+|||+++..++..+...+. .+++|..+++...... .+.+.+... . .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~-------~~~~~~~~~- 71 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQ--L-------PESIAPIEE- 71 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHh--h-------ccchhhhHH-
Confidence 3679999999999999999998876542 2444555555444322 122222110 0 000000000
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEecchhhHHH
Q psy210 757 LRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789 (915)
Q Consensus 757 ~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~ 789 (915)
....+.++.+++++++|.+--+.+
T Consensus 72 ---------~~~~~~~~~~~~llilDglDE~~~ 95 (166)
T PF05729_consen 72 ---------LLQELLEKNKRVLLILDGLDELEE 95 (166)
T ss_pred ---------HHHHHHHcCCceEEEEechHhccc
Confidence 334555678999999999885443
No 228
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.98 E-value=0.084 Score=53.80 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=36.4
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHH
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKL 307 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l 307 (915)
++|.|++|+|||+++++.+......+-.|+|....+..+++.+..+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHc
Confidence 468999999999998887776654555678999888877766554443
No 229
>PTZ00035 Rad51 protein; Provisional
Probab=95.97 E-value=0.016 Score=65.61 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=69.7
Q ss_pred Cccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhc------CCCeEEEEEeecc--chhhHHHHHHHH
Q psy210 238 NEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQK------NKNVICIYVCIGQ--KISSLINVINKL 307 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~------~~~~~~V~~~iGe--r~~ev~~~~~~l 307 (915)
...+.||++.+|.++- +-+|.-..|+|++|+|||+++++...+.. ..+..|+|.--.. +.+.+.++.+.+
T Consensus 97 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~ 176 (337)
T PTZ00035 97 IIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERF 176 (337)
T ss_pred CccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHh
Confidence 4568899999999975 44699999999999999999876654422 1344677766554 244455554443
Q ss_pred hc--cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 308 KY--YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 308 ~~--~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
.- ..++++-.+ ....+ ..++.... ..+.+.+.+ +.--|||+||++.+-+
T Consensus 177 g~~~~~~l~nI~~--~~~~~-~e~~~~~l---~~~~~~l~~-~~~~lvVIDSital~r 227 (337)
T PTZ00035 177 GLDPEDVLDNIAY--ARAYN-HEHQMQLL---SQAAAKMAE-ERFALLIVDSATALFR 227 (337)
T ss_pred CCChHhHhhceEE--EccCC-HHHHHHHH---HHHHHHhhc-cCccEEEEECcHHhhh
Confidence 11 122444222 22221 11111111 123334444 3445899999998754
No 230
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.92 E-value=0.024 Score=64.26 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=74.3
Q ss_pred ccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhc------CCCeEEEEEeecc--chhhHHHHHHHHh
Q psy210 239 EPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQK------NKNVICIYVCIGQ--KISSLINVINKLK 308 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~------~~~~~~V~~~iGe--r~~ev~~~~~~l~ 308 (915)
..+.||+..+|.++. +-+|.=..|+|++|+|||+++++...+.. ..+..|+|.-..+ +.+.+.++.+.+.
T Consensus 103 ~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~ 182 (342)
T PLN03186 103 IQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFG 182 (342)
T ss_pred ceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcC
Confidence 458899999999776 44588899999999999999987765521 1334688988887 5666666666542
Q ss_pred c--cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHH
Q psy210 309 Y--YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 309 ~--~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
- ..++++..++-.. ....+... -..+++.+.+.+.+ |||+||++.+-+.
T Consensus 183 ~~~~~~l~~i~~~~~~---~~e~~~~l---l~~~~~~~~~~~~~-LIVIDSI~alfr~ 233 (342)
T PLN03186 183 LNGADVLENVAYARAY---NTDHQSEL---LLEAASMMAETRFA-LMIVDSATALYRT 233 (342)
T ss_pred CChhhhccceEEEecC---CHHHHHHH---HHHHHHHhhccCCC-EEEEeCcHHHHHH
Confidence 1 2234443222221 12222111 11233344444444 8999999988543
No 231
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.83 E-value=0.017 Score=64.72 Aligned_cols=109 Identities=23% Similarity=0.363 Sum_probs=67.5
Q ss_pred cccccccceeeecccc---cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc-
Q psy210 663 NNILETGIKVIDLLCP---FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV- 738 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p---igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~- 738 (915)
.+.+.||+..+|..++ +.+|.=+=|+|++++|||+|+..++.+..+. ...|+|+ +--..=-.++.+.+ |+
T Consensus 31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~I--D~e~~ld~~~a~~l---Gvd 104 (322)
T PF00154_consen 31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFI--DAEHALDPEYAESL---GVD 104 (322)
T ss_dssp S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEE--ESSS---HHHHHHT---T--
T ss_pred cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEe--cCcccchhhHHHhc---Ccc
Confidence 3579999999999988 4467777899999999999999999876553 3456665 32222222334343 33
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRF 787 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~ 787 (915)
++| +++ ...|. ..-++.++|.+...|.-.++++||+..+
T Consensus 105 l~r-llv-~~P~~--------~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 105 LDR-LLV-VQPDT--------GEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp GGG-EEE-EE-SS--------HHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred ccc-eEE-ecCCc--------HHHHHHHHHHHhhcccccEEEEecCccc
Confidence 445 333 33321 2346788999888887678899998754
No 232
>PRK08344 V-type ATP synthase subunit K; Validated
Probab=95.83 E-value=0.0069 Score=60.86 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGP 55 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~ 55 (915)
+..+++++++|++++|+++|+|.++++++++++||||. ++++++..+.
T Consensus 2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~~----~~~~li~~a~ 49 (157)
T PRK08344 2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEKN----FRNALILAGL 49 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHHHH
Confidence 46789999999999999999999999999999999993 4445554333
No 233
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.78 E-value=0.031 Score=63.40 Aligned_cols=120 Identities=16% Similarity=0.204 Sum_probs=74.2
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhc-----CCcEEEEEEecC--CCchHHHHHHHhh
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIE-----HKGCSVFIGVGE--RSREGNDFYHEMK 734 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~-----~~~~~v~~~iGe--r~~ev~e~~~~~~ 734 (915)
..+.||++.+|-++. +-+|.=..|+|+||+|||+|+.+++.+.... ...-++|+-.-+ +++.+.++.+.+.
T Consensus 103 ~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~ 182 (342)
T PLN03186 103 IQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFG 182 (342)
T ss_pred ceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcC
Confidence 458999999999765 6678888999999999999999999875421 113567775444 4555666655432
Q ss_pred --hcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHh
Q psy210 735 --ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 735 --~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A 790 (915)
....+++ +.++...+ ..+.... ...+++.+.+ ++=-||++||++-+-+.
T Consensus 183 ~~~~~~l~~-i~~~~~~~--~e~~~~l---l~~~~~~~~~-~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 183 LNGADVLEN-VAYARAYN--TDHQSEL---LLEAASMMAE-TRFALMIVDSATALYRT 233 (342)
T ss_pred CChhhhccc-eEEEecCC--HHHHHHH---HHHHHHHhhc-cCCCEEEEeCcHHHHHH
Confidence 1234555 33333322 2222221 1223334433 34457889999987543
No 234
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.67 E-value=0.025 Score=63.50 Aligned_cols=119 Identities=21% Similarity=0.227 Sum_probs=68.4
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhc--C---CcEEEEEEecC--CCchHHHHHHHhh
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIE--H---KGCSVFIGVGE--RSREGNDFYHEMK 734 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~--~---~~~~v~~~iGe--r~~ev~e~~~~~~ 734 (915)
..+.||++.+|-++. +-+|.=+.|.|++|+|||+|+.+++.+.... . ..-++|+-.-+ +++.+.+..+.+.
T Consensus 76 ~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~ 155 (316)
T TIGR02239 76 IQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYG 155 (316)
T ss_pred ceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 358899999999765 5678999999999999999999999865321 1 12456653332 2333444433321
Q ss_pred --hcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHH
Q psy210 735 --ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789 (915)
Q Consensus 735 --~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~ 789 (915)
...++++ +.++...+ +.+.... --.+.+.+.+ ++=-||++||++-+-+
T Consensus 156 ~~~~~~l~~-i~~~~~~~--~~~~~~~---l~~~~~~~~~-~~~~LvVIDSI~al~r 205 (316)
T TIGR02239 156 LNPEDVLDN-VAYARAYN--TDHQLQL---LQQAAAMMSE-SRFALLIVDSATALYR 205 (316)
T ss_pred CChHHhhcc-EEEEecCC--hHHHHHH---HHHHHHhhcc-CCccEEEEECcHHHhh
Confidence 1223444 23333222 2222211 1222333433 3445789999997643
No 235
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.50 E-value=0.04 Score=61.94 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=67.9
Q ss_pred ccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHh-hc-----CCCeEEEEEeecc--chhhHHHHHHHHh
Q psy210 239 EPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIIN-QK-----NKNVICIYVCIGQ--KISSLINVINKLK 308 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~-~~-----~~~~~~V~~~iGe--r~~ev~~~~~~l~ 308 (915)
..+.||+..+|.++. +-+|.=+.|.|++|+|||+++++...+ +. ..+..|+|.-..+ +.+.+.+..+.+.
T Consensus 76 ~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~ 155 (316)
T TIGR02239 76 IQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYG 155 (316)
T ss_pred ceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 458899999999776 335899999999999999998777654 21 1223577876665 3443444443321
Q ss_pred c--cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHH
Q psy210 309 Y--YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 309 ~--~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~ 363 (915)
- ..++++-.+.... + +.++.... -.+.+.+.+.+. -|||+||++.+-+
T Consensus 156 ~~~~~~l~~i~~~~~~--~-~~~~~~~l---~~~~~~~~~~~~-~LvVIDSI~al~r 205 (316)
T TIGR02239 156 LNPEDVLDNVAYARAY--N-TDHQLQLL---QQAAAMMSESRF-ALLIVDSATALYR 205 (316)
T ss_pred CChHHhhccEEEEecC--C-hHHHHHHH---HHHHHhhccCCc-cEEEEECcHHHhh
Confidence 1 1223332222221 1 11221111 122334444444 4899999998843
No 236
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.50 E-value=0.016 Score=63.37 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=55.5
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHH-hcCCcEEEEEEecCCCchHHHHHHHhhhc-CccccEEEEEEcCCCChHhHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIA-IEHKGCSVFIGVGERSREGNDFYHEMKES-NVLDKVSLIYGQMNEPSGNRL 757 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~-~~~~~~~v~~~iGer~~ev~e~~~~~~~~-~~~~~~~vv~~t~d~~~~~r~ 757 (915)
...+.++|.|.+|+|||+|+.++++... .++-+.++++-.+..... .++.+.+.+. +.-.... ..... ..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~-~~~~~~i~~~l~~~~~~~----~~~~~-~~-- 88 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL-EQLLEQILRQLGEPDSSI----SDPKD-IE-- 88 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC-HHHHHHHHHHHTCC-STS----SCCSS-HH--
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc-cccccccccccccccccc----ccccc-cc--
Confidence 4567789999999999999999998733 233477888877766655 3444444321 1000000 01111 11
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 758 RVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 758 ~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
...-.+.+.+. +++.|+|+||+....
T Consensus 89 ---~~~~~l~~~L~--~~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 89 ---ELQDQLRELLK--DKRCLLVLDDVWDEE 114 (287)
T ss_dssp ---HHHHHHHHHHC--CTSEEEEEEEE-SHH
T ss_pred ---cccccchhhhc--cccceeeeeeecccc
Confidence 12334445555 459999999987533
No 237
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.45 E-value=0.027 Score=59.81 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.6
Q ss_pred eeeeccCCCCChhhHHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
-+.++||||+|||||+.-|++.+.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCccchhHHHHHHHhccC
Confidence 368999999999999988887653
No 238
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.41 E-value=0.045 Score=56.26 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=35.1
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcC--------CcEEEEEEecCCCc-hHHHHHHHh
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEH--------KGCSVFIGVGERSR-EGNDFYHEM 733 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~--------~~~~v~~~iGer~~-ev~e~~~~~ 733 (915)
.+|+-..|.|++|+|||+++.+++..+.... ....|+..-.|-.. ++.+-+..+
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~ 92 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRAL 92 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHH
Confidence 3799999999999999999999999877521 22344444444443 565555444
No 239
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.31 E-value=0.036 Score=62.90 Aligned_cols=76 Identities=24% Similarity=0.287 Sum_probs=52.3
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a 763 (915)
-+-+.||||||||||+.-|+..... .+.-+-++ ..-+.| ..-+
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~---~f~~~sAv---~~gvkd-------------------------------lr~i 92 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNA---AFEALSAV---TSGVKD-------------------------------LREI 92 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCC---ceEEeccc---cccHHH-------------------------------HHHH
Confidence 4567999999999999888875432 11111111 111111 1226
Q ss_pred HHHHHHHHHCCCcEEEEecchhhHHHhhhhhhh
Q psy210 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796 (915)
Q Consensus 764 ~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~ 796 (915)
++.|+.++..|+.+++++|.+-||-.++.+.=+
T Consensus 93 ~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 93 IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred HHHHHHHHhcCCceEEEEehhhhcChhhhhhhh
Confidence 677888888899999999999999999988654
No 240
>KOG2028|consensus
Probab=95.28 E-value=0.047 Score=60.99 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=49.6
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC---CCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE---RSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVAL 761 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe---r~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~ 761 (915)
+-+.||||||||+|+.-|+.+.+. +. .-|+-+-. ...+++++++.-++
T Consensus 165 mIlWGppG~GKTtlArlia~tsk~-~S--yrfvelSAt~a~t~dvR~ife~aq~-------------------------- 215 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIASTSKK-HS--YRFVELSATNAKTNDVRDIFEQAQN-------------------------- 215 (554)
T ss_pred eEEecCCCCchHHHHHHHHhhcCC-Cc--eEEEEEeccccchHHHHHHHHHHHH--------------------------
Confidence 456899999999999988876543 22 33443332 33344443333221
Q ss_pred HHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhh
Q psy210 762 TGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796 (915)
Q Consensus 762 ~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~ 796 (915)
+...-++..++++|.+.||-.+|..+-+
T Consensus 216 -------~~~l~krkTilFiDEiHRFNksQQD~fL 243 (554)
T KOG2028|consen 216 -------EKSLTKRKTILFIDEIHRFNKSQQDTFL 243 (554)
T ss_pred -------HHhhhcceeEEEeHHhhhhhhhhhhccc
Confidence 2334478899999999999999987654
No 241
>PRK05973 replicative DNA helicase; Provisional
Probab=95.25 E-value=0.088 Score=56.69 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=40.4
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFY 730 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~ 730 (915)
+-+|+=+.|.|+||+|||+++.+++.+..++ ..-++|...-|..+++.+=.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~ 111 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRL 111 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHH
Confidence 7789999999999999999999999987654 34567777777666655433
No 242
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.20 E-value=0.083 Score=50.24 Aligned_cols=110 Identities=24% Similarity=0.293 Sum_probs=59.6
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCcEEEE-EEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVF-IGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~-~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a 763 (915)
++|.|++|+|||+++..+++.+. ..++ +-+++-..+ ....-.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~~~--------------------------~~~~~~~~i~~~ 49 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELISS--------------------------YAGDSEQKIRDF 49 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHHTS--------------------------STTHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccccc--------------------------cccccccccccc
Confidence 57899999999999999998763 2232 222211100 000000111111
Q ss_pred HHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEe
Q psy210 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYV 838 (915)
Q Consensus 764 ~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~ 838 (915)
+. .....++..++++|++-.+.... .+....+...+...+..++++.-. ..+.++.+.|...
T Consensus 50 ~~---~~~~~~~~~vl~iDe~d~l~~~~---------~~~~~~~~~~~~~~L~~~l~~~~~-~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 50 FK---KAKKSAKPCVLFIDEIDKLFPKS---------QPSSSSFEQRLLNQLLSLLDNPSS-KNSRVIVIATTNS 111 (132)
T ss_dssp HH---HHHHTSTSEEEEEETGGGTSHHC---------STSSSHHHHHHHHHHHHHHHTTTT-TSSSEEEEEEESS
T ss_pred cc---cccccccceeeeeccchhccccc---------ccccccccccccceeeeccccccc-ccccceeEEeeCC
Confidence 11 11222357999999999766655 233344455556666666665432 2355777777543
No 243
>PF13173 AAA_14: AAA domain
Probab=95.19 E-value=0.049 Score=52.60 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
++-+.|.|++|+|||||+.++++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34578999999999999999987653
No 244
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.90 E-value=0.028 Score=53.70 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=50.4
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHhc-----CCcEEEEEEecCCCchHHHHHHHhhhc-CccccEEEEEEcCCCChHhH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAIE-----HKGCSVFIGVGERSREGNDFYHEMKES-NVLDKVSLIYGQMNEPSGNR 756 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~~-----~~~~~v~~~iGer~~ev~e~~~~~~~~-~~~~~~~vv~~t~d~~~~~r 756 (915)
+=+.|.|++|+|||+++..+++..... +.+ ++++-+.... ....|.+.+.+. +.-... +
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~-------------~ 69 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPD-VIYVNCPSSR-TPRDFAQEILEALGLPLKS-------------R 69 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEE-EEEEEHHHHS-SHHHHHHHHHHHHT-SSSS-------------T
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCc-EEEEEeCCCC-CHHHHHHHHHHHhCccccc-------------c
Confidence 346789999999999999999976531 222 3455555544 455666665432 111000 1
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 757 LRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 757 ~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
.......-.+.+++...+. ++|++|+.-++.
T Consensus 70 ~~~~~l~~~~~~~l~~~~~-~~lviDe~~~l~ 100 (131)
T PF13401_consen 70 QTSDELRSLLIDALDRRRV-VLLVIDEADHLF 100 (131)
T ss_dssp S-HHHHHHHHHHHHHHCTE-EEEEEETTHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC-eEEEEeChHhcC
Confidence 1122222344455555444 899999998754
No 245
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.88 E-value=0.055 Score=59.52 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=71.7
Q ss_pred Cccccccceeeecccccc--ccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEE-eec-cchhhHHHHHHHHhccCCc
Q psy210 238 NEPLLTGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYV-CIG-QKISSLINVINKLKYYNCM 313 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~pig--rGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~-~iG-er~~ev~~~~~~l~~~~~~ 313 (915)
.+.+.||..++|-++-=| +|.-.=|||++++|||++|++.+++-...+-.|+|. .-| -+.+....+-..+ +
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-----~ 113 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-----L 113 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh-----h
Confidence 678899999999998833 377778999999999999999999854444345444 222 3444444443332 1
Q ss_pred ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCC--cEEEEeccchhHHHHH
Q psy210 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQ--DCLIIYDDLTKHAWAY 365 (915)
Q Consensus 314 ~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~--~Vlv~~Ddltr~a~A~ 365 (915)
+ -++++..++ .. -++.+++.+...+. ==|||+||++-+-++.
T Consensus 114 d--~l~v~~~~~-~e-------~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 114 D--NLLVSQPDT-GE-------QQLEIAEKLARSGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred c--ceeEecCCC-HH-------HHHHHHHHHHHhccCCCCEEEEecCcccchhh
Confidence 1 122222222 22 34566666665433 3489999999877653
No 246
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.84 E-value=0.032 Score=60.79 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=71.4
Q ss_pred ccccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhc-----CCcEEEEEEecC--CCchHHHHHHH
Q psy210 662 NNNILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE-----HKGCSVFIGVGE--RSREGNDFYHE 732 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~-----~~~~~v~~~iGe--r~~ev~e~~~~ 732 (915)
....+.||++.+|.++ -|-.|+=.=|+|+||+|||.|+.+++.++... ...-+||+-.-- +.+-..++.+.
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~ 95 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAER 95 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhc
Confidence 3456899999999997 36678888899999999999999999876421 123466662111 22333333332
Q ss_pred h--hhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhh
Q psy210 733 M--KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAG 791 (915)
Q Consensus 733 ~--~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~ 791 (915)
+ ..+.+++|-.+ ....+- .+..... ......+.+ .+==||++||++.+-+..
T Consensus 96 ~~~~~~~~l~~I~v-~~~~~~--~~l~~~L---~~l~~~l~~-~~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 96 FGLDPEEILDNIFV-IRVFDL--EELLELL---EQLPKLLSE-SKIKLIVIDSIAALFRSE 149 (256)
T ss_dssp TTS-HHHHHHTEEE-EE-SSH--HHHHHHH---HHHHHHHHH-SCEEEEEEETSSHHHHHH
T ss_pred cccccchhhhceee-eecCCH--HHHHHHH---HHHHhhccc-cceEEEEecchHHHHHHH
Confidence 2 22345666443 333332 2222221 123344544 455689999999886654
No 247
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.81 E-value=0.084 Score=53.92 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=55.8
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccc-hhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhh
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQK-ISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGC 338 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer-~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~ 338 (915)
++|.|++|+|||++|.+.+.. ... .++|..-.+. ..|+.+-++..++..-. ++.+.....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-~~~--~~~y~at~~~~d~em~~rI~~H~~~R~~----------------~w~t~E~~~ 62 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-LGG--PVTYIATAEAFDDEMAERIARHRKRRPA----------------HWRTIETPR 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-cCC--CeEEEEccCcCCHHHHHHHHHHHHhCCC----------------CceEeecHH
Confidence 579999999999998776554 222 3556666654 55667766665543311 122223345
Q ss_pred hhHHHHHhc-CCcEEEEeccchhHHHHHH
Q psy210 339 TIGEYFRDL-GQDCLIIYDDLTKHAWAYR 366 (915)
Q Consensus 339 tiAEy~r~~-g~~Vlv~~Ddltr~a~A~r 366 (915)
.+.+.+.+. +.+ +|++|++|.|.....
T Consensus 63 ~l~~~l~~~~~~~-~VLIDclt~~~~n~l 90 (169)
T cd00544 63 DLVSALKELDPGD-VVLIDCLTLWVTNLL 90 (169)
T ss_pred HHHHHHHhcCCCC-EEEEEcHhHHHHHhC
Confidence 566666653 444 799999999997764
No 248
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.68 E-value=0.4 Score=53.97 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=30.7
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE 721 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe 721 (915)
.+|+.++++|++|+||||++..++....... .-+.++.++-
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEecCc
Confidence 4688999999999999999999999876432 2233344553
No 249
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.66 E-value=0.13 Score=59.33 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=55.6
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCc-EEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKG-CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLR 758 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~-~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~ 758 (915)
++++.+.|.|++|+|||+++..+++......++ ..+++-|-+... ...++..+.+. +.... ......+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~-l~~~~---~~~~~~~~----- 122 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT-RYAIFSEIARQ-LFGHP---PPSSGLSF----- 122 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC-HHHHHHHHHHH-hcCCC---CCCCCCCH-----
Confidence 345679999999999999999999877543323 356665544332 23444443221 00000 00000111
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 759 VALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 759 ~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
-...-.+.+++...++.++|++|.+-.+.
T Consensus 123 -~~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 123 -DELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred -HHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 11122234566666888999999998765
No 250
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.63 E-value=0.078 Score=54.49 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=41.2
Q ss_pred cccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcC----------CCeEEEEEeeccchhhHHHHHHHHh
Q psy210 242 LTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKN----------KNVICIYVCIGQKISSLINVINKLK 308 (915)
Q Consensus 242 ~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~----------~~~~~V~~~iGer~~ev~~~~~~l~ 308 (915)
.|++...|.+++ +.+|+-..|.|++|+|||+++++++..... ....++|.-.....+++.+-+..+.
T Consensus 15 ~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 15 DTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp HS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred cCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 344444444443 236899999999999999999888776532 3456778888888777777666544
No 251
>PRK05973 replicative DNA helicase; Provisional
Probab=94.51 E-value=0.16 Score=54.82 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=59.8
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCc----ceEEEEEecCCCCHH
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCM----DYTVVVAATAADSAA 328 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~----~~tvvv~~~a~~~~~ 328 (915)
-+-+|+=+.|.|.+|+|||+++++.+.+....+-.++|....+..+++.+ ++...|.- .+. ......+.-..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~---R~~s~g~d~~~~~~~-~~~d~~d~~~~ 135 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD---RLRALGADRAQFADL-FEFDTSDAICA 135 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH---HHHHcCCChHHhccc-eEeecCCCCCH
Confidence 45679999999999999999999988876544556789988888765554 44443441 111 22222222111
Q ss_pred HhhhhhhhhhhhHHHHH-hcCCcEEEEeccchhHH
Q psy210 329 EQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 329 ~r~~~~~~a~tiAEy~r-~~g~~Vlv~~Ddltr~a 362 (915)
-.+.+.+. +.+.+ +||+|+|+-+.
T Consensus 136 ---------~~ii~~l~~~~~~~-lVVIDsLq~l~ 160 (237)
T PRK05973 136 ---------DYIIARLASAPRGT-LVVIDYLQLLD 160 (237)
T ss_pred ---------HHHHHHHHHhhCCC-EEEEEcHHHHh
Confidence 11233443 33444 89999998764
No 252
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.51 E-value=0.32 Score=49.24 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=33.5
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHE 732 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~ 732 (915)
+++.|++|+|||+++..++....+. ..-++++-++-+..+..+.+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~~~~~~~l~~ 49 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYRPAAIEQLRV 49 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCChHHHHHHHH
Confidence 5789999999999999999877654 2334556677665555554444
No 253
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.50 E-value=0.083 Score=56.16 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=39.9
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhh
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCT 339 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~t 339 (915)
+.+.||+|+||||| ...|++..+.+++..-+-.=++..+.
T Consensus 53 ~lf~GPPG~GKTTL-A~IIA~e~~~~~~~~sg~~i~k~~dl--------------------------------------- 92 (233)
T PF05496_consen 53 MLFYGPPGLGKTTL-ARIIANELGVNFKITSGPAIEKAGDL--------------------------------------- 92 (233)
T ss_dssp EEEESSTTSSHHHH-HHHHHHHCT--EEEEECCC--SCHHH---------------------------------------
T ss_pred EEEECCCccchhHH-HHHHHhccCCCeEeccchhhhhHHHH---------------------------------------
Confidence 67999999999999 47788887777643222111222222
Q ss_pred hHHHHHhcCCcEEEEeccchhHHHHHHHHHh
Q psy210 340 IGEYFRDLGQDCLIIYDDLTKHAWAYRQISL 370 (915)
Q Consensus 340 iAEy~r~~g~~Vlv~~Ddltr~a~A~reis~ 370 (915)
|..+...+.+-++++|.+-|+-.++.|+=+
T Consensus 93 -~~il~~l~~~~ILFIDEIHRlnk~~qe~Ll 122 (233)
T PF05496_consen 93 -AAILTNLKEGDILFIDEIHRLNKAQQEILL 122 (233)
T ss_dssp -HHHHHT--TT-EEEECTCCC--HHHHHHHH
T ss_pred -HHHHHhcCCCcEEEEechhhccHHHHHHHH
Confidence 222222234457778999999999988643
No 254
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.41 E-value=0.23 Score=50.74 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=55.4
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCC-CchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGER-SREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer-~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a 763 (915)
+.|.|++|+|||+++.+++... ..-++|+...+. ..|+.+-++..++..-.+ +......
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~----~~~~~y~at~~~~d~em~~rI~~H~~~R~~~----------------w~t~E~~ 61 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL----GGPVTYIATAEAFDDEMAERIARHRKRRPAH----------------WRTIETP 61 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc----CCCeEEEEccCcCCHHHHHHHHHHHHhCCCC----------------ceEeecH
Confidence 5789999999999999998651 233566654443 456666666544332111 1111224
Q ss_pred HHHHHHHHHC-CCcEEEEecchhhHHHhhhh
Q psy210 764 LSIAEEFRNS-GKDVLLFIDNIYRFTLAGTE 793 (915)
Q Consensus 764 ~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A~re 793 (915)
..+.+.+.+. +.+ ++++|++|-|......
T Consensus 62 ~~l~~~l~~~~~~~-~VLIDclt~~~~n~l~ 91 (169)
T cd00544 62 RDLVSALKELDPGD-VVLIDCLTLWVTNLLF 91 (169)
T ss_pred HHHHHHHHhcCCCC-EEEEEcHhHHHHHhCC
Confidence 4566666554 445 6889999999887763
No 255
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.38 E-value=0.087 Score=56.29 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=39.5
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGND 728 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e 728 (915)
+-+|+=+.|.|+||+|||+++.+++.+...++..-++|...-+.++++..
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 67899999999999999999999999887653445566666666665544
No 256
>PRK14974 cell division protein FtsY; Provisional
Probab=94.34 E-value=0.39 Score=54.44 Aligned_cols=95 Identities=20% Similarity=0.148 Sum_probs=51.2
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh-cCccccEEEEEEcCCCChHhHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE-SNVLDKVSLIYGQMNEPSGNRLR 758 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~-~~~~~~~~vv~~t~d~~~~~r~~ 758 (915)
+++..++++|++|+||||++..++.....+. --++++.++--.....+.++...+ .++ -++-..+..+| .
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~~V~li~~Dt~R~~a~eqL~~~a~~lgv---~v~~~~~g~dp-~---- 208 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-FSVVIAAGDTFRAGAIEQLEEHAERLGV---KVIKHKYGADP-A---- 208 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCcCcHHHHHHHHHHHHHcCC---ceecccCCCCH-H----
Confidence 3467899999999999999999998776432 223345555333334344443322 221 11111111122 1
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEecchhh
Q psy210 759 VALTGLSIAEEFRNSGKDVLLFIDNIYR 786 (915)
Q Consensus 759 ~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr 786 (915)
..+....++....|+| +|++|.--|
T Consensus 209 --~v~~~ai~~~~~~~~D-vVLIDTaGr 233 (336)
T PRK14974 209 --AVAYDAIEHAKARGID-VVLIDTAGR 233 (336)
T ss_pred --HHHHHHHHHHHhCCCC-EEEEECCCc
Confidence 1123333455567899 666676544
No 257
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.25 E-value=0.57 Score=51.56 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=32.1
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEec-CCCchHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVG-ERSREGN 727 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iG-er~~ev~ 727 (915)
.+++.+.++|++|+||||++..++........ -+.++-++ .|.....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~-~V~li~~D~~r~~a~~ 117 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGK-SVLLAAGDTFRAAAIE 117 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEeCCCCCHHHHH
Confidence 34677889999999999999999988765422 23344455 3443333
No 258
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.21 E-value=0.087 Score=57.42 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=70.6
Q ss_pred Cccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhh------cCCCeEEEEEeecc--chhhHHHHHHHH
Q psy210 238 NEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQ------KNKNVICIYVCIGQ--KISSLINVINKL 307 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~------~~~~~~~V~~~iGe--r~~ev~~~~~~l 307 (915)
...|-||++.+|.++- +-.|+=.=|+|++|+|||.|+++..++. ...+..+||.=..- +.+...++.+++
T Consensus 17 ~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~ 96 (256)
T PF08423_consen 17 WSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERF 96 (256)
T ss_dssp S-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHT
T ss_pred CCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcc
Confidence 3568999999999984 4458888899999999999999886652 12456677875443 333444444432
Q ss_pred h--ccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHH
Q psy210 308 K--YYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 308 ~--~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
. ...++++..+.-.. + ..+...... .+...+.+.. ==|||+||++.+-+.
T Consensus 97 ~~~~~~~l~~I~v~~~~--~-~~~l~~~L~---~l~~~l~~~~-ikLIVIDSIaalfr~ 148 (256)
T PF08423_consen 97 GLDPEEILDNIFVIRVF--D-LEELLELLE---QLPKLLSESK-IKLIVIDSIAALFRS 148 (256)
T ss_dssp TS-HHHHHHTEEEEE-S--S-HHHHHHHHH---HHHHHHHHSC-EEEEEEETSSHHHHH
T ss_pred ccccchhhhceeeeecC--C-HHHHHHHHH---HHHhhccccc-eEEEEecchHHHHHH
Confidence 1 12346665544322 1 122221111 2334455444 459999999998664
No 259
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=94.15 E-value=0.021 Score=49.15 Aligned_cols=37 Identities=32% Similarity=0.377 Sum_probs=32.9
Q ss_pred cchhhhhhhccccceeeeccccCccCcccCCeEEeCC
Q psy210 576 NISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTG 612 (915)
Q Consensus 576 v~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg 612 (915)
.+...+.+.+|+++.+++++|+++.||++|++|++||
T Consensus 33 ~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 33 GNGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp TTEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred eeeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence 3455677789999999999999999999999999986
No 260
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.033 Score=59.43 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=26.6
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.|.+|+..||+|++|+|||||+..++--.
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 579999999999999999999998877543
No 261
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.14 E-value=0.18 Score=48.16 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=49.0
Q ss_pred cceeeeecCCCCChhHHHHHHHHhhcCC------CeEEEEEeeccchhhHHHHHHHHhc-cCCcceEEEEEecCCCCHHH
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQKNK------NVICIYVCIGQKISSLINVINKLKY-YNCMDYTVVVAATAADSAAE 329 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~~~~------~~~~V~~~iGer~~ev~~~~~~l~~-~~~~~~tvvv~~~a~~~~~~ 329 (915)
++-+.|.|++|+|||++ +..+.++... +..++|.-+.... ....|.+.+.+ -+.....
T Consensus 4 ~~~~~i~G~~G~GKT~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL-IKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp ---EEEEE-TTSSHHHH-HHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSS-------------
T ss_pred CcccEEEcCCCCCHHHH-HHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccc-------------
Confidence 34567899999999999 5666654321 5556777777766 55556655433 1211111
Q ss_pred hhhhhhhhhhhHHHHHhcCCcEEEEeccchhH
Q psy210 330 QYISPYTGCTIGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 330 r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
+.......-.+.+++.+.+. ++||+|+.-.+
T Consensus 69 ~~~~~~l~~~~~~~l~~~~~-~~lviDe~~~l 99 (131)
T PF13401_consen 69 RQTSDELRSLLIDALDRRRV-VLLVIDEADHL 99 (131)
T ss_dssp TS-HHHHHHHHHHHHHHCTE-EEEEEETTHHH
T ss_pred cCCHHHHHHHHHHHHHhcCC-eEEEEeChHhc
Confidence 00111111334445554444 89999999887
No 262
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.14 E-value=0.028 Score=58.75 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=53.3
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCc--hHHHHHH----------HhhhcCccccEEEEEE
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSR--EGNDFYH----------EMKESNVLDKVSLIYG 747 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~--ev~e~~~----------~~~~~~~~~~~~vv~~ 747 (915)
+.++-+.|+|++|+|||+|+..++...... ...++|...-+... .+..++. .+.. ..-+.+..-++
T Consensus 18 ~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 95 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSLLKEFINELKEK-GYKVVYIDFLEESNESSLRSFIEETSLADELSEALGI-SIPSITLEKIS 95 (234)
T ss_dssp --SSEEEEEESTTSSHHHHHHHHHHHCT---EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHH-HCCTSTTEEEE
T ss_pred hcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhh-hcccccchhhh
Confidence 356899999999999999999998876322 12344543322222 2223311 0100 00000000011
Q ss_pred cCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 748 QMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 748 t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
. .........-..+.+++...+++++|++|++..+.
T Consensus 96 ~-----~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 96 K-----DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp C-----TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred h-----cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 1 11112223345556778788888999999999866
No 263
>PF13173 AAA_14: AAA domain
Probab=94.08 E-value=0.15 Score=49.26 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=48.3
Q ss_pred ceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhh
Q psy210 258 QRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTG 337 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a 337 (915)
+-+.|.|++||||||++.+.+.... ..-.++|.- .+++...+...+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~------------------------------~~~~~~~~~~~~~-- 49 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN------------------------------FDDPRDRRLADPD-- 49 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec------------------------------cCCHHHHHHhhhh--
Confidence 4568999999999999544443332 111122322 2232232222111
Q ss_pred hhhHHHHHhc--CCcEEEEeccchhHHHHHHHHHhhcCCC
Q psy210 338 CTIGEYFRDL--GQDCLIIYDDLTKHAWAYRQISLLLRRP 375 (915)
Q Consensus 338 ~tiAEy~r~~--g~~Vlv~~Ddltr~a~A~reis~~~~~~ 375 (915)
+.+++++. ....+|++|++.+..+....+-......
T Consensus 50 --~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 50 --LLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNG 87 (128)
T ss_pred --hHHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhc
Confidence 55666643 4567899999999887777766666643
No 264
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.034 Score=59.67 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=28.5
Q ss_pred ceeee-cccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 670 IKVID-LLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 670 ir~ID-~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
..+++ .=+.+.+|+-+.|+|+||||||||+..|+-
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34443 346899999999999999999999987764
No 265
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.96 E-value=0.29 Score=52.08 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=28.8
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHhcCCcE-EEEE
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC-SVFI 717 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~-~v~~ 717 (915)
.+-+-|+|++|+|||+|++.+++.+.+.+++. ++|.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 34688999999999999999999877655554 5565
No 266
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.95 E-value=0.085 Score=58.09 Aligned_cols=114 Identities=24% Similarity=0.314 Sum_probs=73.6
Q ss_pred ccccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE-Eec-CCCchHHHHHHHhhhcC
Q psy210 662 NNNILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI-GVG-ERSREGNDFYHEMKESN 737 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~-~iG-er~~ev~e~~~~~~~~~ 737 (915)
..+.+.||...+|-++- +-+|.=.=|||++|+|||+|+.+++.+..+. .+.++|+ .-| -+++....+-.+.
T Consensus 38 ~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-g~~a~fIDtE~~l~p~r~~~l~~~~---- 112 (279)
T COG0468 38 DIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP-GGKAAFIDTEHALDPERAKQLGVDL---- 112 (279)
T ss_pred ccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcC-CCeEEEEeCCCCCCHHHHHHHHHhh----
Confidence 36679999999998876 2366777899999999999999999987753 3466776 344 3334443333332
Q ss_pred ccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCC--cEEEEecchhhHHHhh
Q psy210 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGK--DVLLFIDNIYRFTLAG 791 (915)
Q Consensus 738 ~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~--~Vl~~~Ds~tr~a~A~ 791 (915)
+++ ++++..+.. .-++.+++.+...+. ==|+++||++-+-++.
T Consensus 113 -~d~--l~v~~~~~~--------e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 113 -LDN--LLVSQPDTG--------EQQLEIAEKLARSGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred -hcc--eeEecCCCH--------HHHHHHHHHHHHhccCCCCEEEEecCcccchhh
Confidence 222 334444332 234555555555444 5578889999765554
No 267
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.90 E-value=0.16 Score=57.82 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=50.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhh
Q psy210 258 QRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTG 337 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a 337 (915)
--+.+.||+|||||||| ..|+...+.++.- + .++.+.-.-.| ..
T Consensus 49 ~SmIl~GPPG~GKTTlA-~liA~~~~~~f~~----~--------------------------sAv~~gvkdlr-----~i 92 (436)
T COG2256 49 HSMILWGPPGTGKTTLA-RLIAGTTNAAFEA----L--------------------------SAVTSGVKDLR-----EI 92 (436)
T ss_pred ceeEEECCCCCCHHHHH-HHHHHhhCCceEE----e--------------------------ccccccHHHHH-----HH
Confidence 34568999999999994 6677666666521 1 11112212222 34
Q ss_pred hhhHHHHHhcCCcEEEEeccchhHHHHHHHH
Q psy210 338 CTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368 (915)
Q Consensus 338 ~tiAEy~r~~g~~Vlv~~Ddltr~a~A~rei 368 (915)
+.-|+.++..|+.+++++|.+-||-.++.+.
T Consensus 93 ~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~ 123 (436)
T COG2256 93 IEEARKNRLLGRRTILFLDEIHRFNKAQQDA 123 (436)
T ss_pred HHHHHHHHhcCCceEEEEehhhhcChhhhhh
Confidence 5556667767999999999999999888663
No 268
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.86 E-value=0.19 Score=54.21 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=29.0
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREG 726 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev 726 (915)
|+.|+|++|+|||+|+..+..+..... -+||....+...+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~~n~~~ 55 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPEYNNEY 55 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecCCchhh
Confidence 789999999999999999998765432 24444444444433
No 269
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.76 E-value=0.22 Score=56.65 Aligned_cols=100 Identities=12% Similarity=0.202 Sum_probs=53.6
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCc-----EEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKG-----CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSG 754 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~-----~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~ 754 (915)
++++-+.|.|++|+|||+++..+++.+.....+ ..+++-|-+- ..-.+++..+.+. +.++-.-+.....+.
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~-~~~~~~~~~i~~~--l~~~~~~~~~~~~~~- 113 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL-DTLYQVLVELANQ--LRGSGEEVPTTGLST- 113 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC-CCHHHHHHHHHHH--HhhcCCCCCCCCCCH-
Confidence 345779999999999999999998866432221 2455544332 2223344443321 100000000011111
Q ss_pred hHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 755 NRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 755 ~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
.+ .--.+-+++...++.++|++|.+-.+.
T Consensus 114 ~~-----~~~~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 114 SE-----VFRRLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred HH-----HHHHHHHHHHhcCCeEEEEECchhhhc
Confidence 11 112233455556889999999998875
No 270
>PRK08181 transposase; Validated
Probab=93.72 E-value=0.14 Score=56.35 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=34.3
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhh
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMK 734 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~ 734 (915)
-+++.+.++|++|+|||+|+..+++....+ .--++|. .+.++++.+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~-------~~~~L~~~l~ 150 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFT-------RTTDLVQKLQ 150 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeee-------eHHHHHHHHH
Confidence 368889999999999999999999876543 2224555 3456666664
No 271
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.71 E-value=0.29 Score=46.43 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=25.1
Q ss_pred cceeeeecCCCCChhHHHHHHHHhhc-CCCeEEEEEeecc
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQK-NKNVICIYVCIGQ 295 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~~-~~~~~~V~~~iGe 295 (915)
+.-+.|.|++|+|||++ +..++++. ..+..+++.-+.+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHhhcCCCCeEEEehhh
Confidence 56789999999999999 56666543 2233344554433
No 272
>PRK09183 transposase/IS protein; Provisional
Probab=93.70 E-value=0.19 Score=54.94 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=25.6
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.+|+.+.|+||+|+|||+|+..++....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 66799999999999999999999977543
No 273
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.64 E-value=0.76 Score=48.12 Aligned_cols=90 Identities=22% Similarity=0.351 Sum_probs=48.4
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a 763 (915)
-+.++||+|+||||.+.-++.....++..+.++. ++--.-...|-++.+-+ .+ +.-++.....+.|.+- +
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~D~~R~ga~eQL~~~a~--~l-~vp~~~~~~~~~~~~~------~ 72 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-ADTYRIGAVEQLKTYAE--IL-GVPFYVARTESDPAEI------A 72 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-ESTSSTHHHHHHHHHHH--HH-TEEEEESSTTSCHHHH------H
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeec-CCCCCccHHHHHHHHHH--Hh-ccccchhhcchhhHHH------H
Confidence 3678999999999999999998776533444444 45333333333443322 12 2222333323222221 2
Q ss_pred HHHHHHHHHCCCcEEEEecch
Q psy210 764 LSIAEEFRNSGKDVLLFIDNI 784 (915)
Q Consensus 764 ~~~Ae~f~~~g~~Vl~~~Ds~ 784 (915)
...-+++++++.|+++| |..
T Consensus 73 ~~~l~~~~~~~~D~vlI-DT~ 92 (196)
T PF00448_consen 73 REALEKFRKKGYDLVLI-DTA 92 (196)
T ss_dssp HHHHHHHHHTTSSEEEE-EE-
T ss_pred HHHHHHHhhcCCCEEEE-ecC
Confidence 22235667778887766 644
No 274
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.53 E-value=0.8 Score=53.62 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=53.4
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a 763 (915)
-+.++|++|+||||++..+|.........-+.++.++-+...+.+-++.+.+.--. .+. .......|.+ ++
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gv--p~~-~~~~~~~P~~------i~ 171 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGV--PVF-ALGKGQSPVE------IA 171 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCC--ceE-ecCCCCCHHH------HH
Confidence 46789999999999999999986422223456667887665555544444321111 122 2222233321 12
Q ss_pred HHHHHHHHHCCCcEEEEecchhhH
Q psy210 764 LSIAEEFRNSGKDVLLFIDNIYRF 787 (915)
Q Consensus 764 ~~~Ae~f~~~g~~Vl~~~Ds~tr~ 787 (915)
-..-+++...++|++ ++|.--|.
T Consensus 172 ~~al~~~~~~~~DvV-IIDTaGr~ 194 (428)
T TIGR00959 172 RRALEYAKENGFDVV-IVDTAGRL 194 (428)
T ss_pred HHHHHHHHhcCCCEE-EEeCCCcc
Confidence 233345666788765 45766654
No 275
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.47 E-value=0.058 Score=55.50 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=30.8
Q ss_pred eeeecccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 671 KVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 671 r~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.+++..+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4455557899999999999999999999998886543
No 276
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.38 E-value=0.18 Score=54.86 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=37.7
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE 735 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~ 735 (915)
+|--+.+.|++|+|||+|+..|++.+.+ ..--+.|+ .+.|++.++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~-------~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFI-------TAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEE-------EHHHHHHHHHH
Confidence 8889999999999999999999998873 22335666 66778877765
No 277
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.33 E-value=0.056 Score=54.70 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=26.5
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|.++.|.||+|+|||||+.+++.-+
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 467799999999999999999999988643
No 278
>PRK10867 signal recognition particle protein; Provisional
Probab=93.19 E-value=0.9 Score=53.29 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=53.4
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALT 762 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~ 762 (915)
.-+.++|++|+||||++..+|.+.......-+.++.++-+.....+-++.+.+.- ..-++.......|. ..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~---gv~v~~~~~~~dp~------~i 171 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQI---GVPVFPSGDGQDPV------DI 171 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhc---CCeEEecCCCCCHH------HH
Confidence 3577899999999999999999876541223455667765555555454443321 11123322222221 11
Q ss_pred HHHHHHHHHHCCCcEEEEecchhhH
Q psy210 763 GLSIAEEFRNSGKDVLLFIDNIYRF 787 (915)
Q Consensus 763 a~~~Ae~f~~~g~~Vl~~~Ds~tr~ 787 (915)
+-..-++++..++|++|+ |.--|.
T Consensus 172 ~~~a~~~a~~~~~DvVII-DTaGrl 195 (433)
T PRK10867 172 AKAALEEAKENGYDVVIV-DTAGRL 195 (433)
T ss_pred HHHHHHHHHhcCCCEEEE-eCCCCc
Confidence 222234566667777655 766554
No 279
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.12 E-value=0.048 Score=57.01 Aligned_cols=101 Identities=24% Similarity=0.275 Sum_probs=52.1
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhhc-CCCeEEEEEeeccch--hhHHHHHH----------HHhccCCcceEEEEEe
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQK-NKNVICIYVCIGQKI--SSLINVIN----------KLKYYNCMDYTVVVAA 321 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~~-~~~~~~V~~~iGer~--~ev~~~~~----------~l~~~~~~~~tvvv~~ 321 (915)
+.++.+.|.|++|+|||+| +..+.+.. ..+..++|....+.. +.+..++. .+.. ...+.+..-..
T Consensus 18 ~~~~~~~l~G~rg~GKTsL-l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 95 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSL-LKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGI-SIPSITLEKIS 95 (234)
T ss_dssp --SSEEEEEESTTSSHHHH-HHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHH-HCCTSTTEEEE
T ss_pred hcCcEEEEEcCCcCCHHHH-HHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhh-hcccccchhhh
Confidence 3468899999999999999 66666653 444334555443322 22333311 1110 00000110111
Q ss_pred cCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 322 TAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 322 ~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
. .........-..+.+++...+++++||+|++..+.
T Consensus 96 ~-----~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 96 K-----DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp C-----TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred h-----cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 1 01111222345566777777888999999999877
No 280
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.07 E-value=0.18 Score=55.04 Aligned_cols=91 Identities=19% Similarity=0.294 Sum_probs=50.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHHh---hcCCCeEEEEEeeccchhhH---HHHHHHHhccCCcceEEEEEecCCCCHHH
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIIN---QKNKNVICIYVCIGQKISSL---INVINKLKYYNCMDYTVVVAATAADSAAE 329 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~---~~~~~~~~V~~~iGer~~ev---~~~~~~l~~~~~~~~tvvv~~~a~~~~~~ 329 (915)
..+.++|.|..|+|||+||.+..-+ +..-+. ++|+-++...... ..+.+.|..... .. .+.....
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~-----~~~~~~~ 88 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSLEQLLEQILRQLGEPDS---SI-----SDPKDIE 88 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCCHHHHHHHHHHHTCC-S---TS-----SCCSSHH
T ss_pred CeEEEEEEcCCcCCcceeeeeccccccccccccc-cccccccccccccccccccccccccccc---cc-----ccccccc
Confidence 3567889999999999998665544 233454 5677777765542 223333332210 00 1111111
Q ss_pred hhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 330 QYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 330 r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
. ..-.+.+.++ +++.|+|+||+....
T Consensus 89 ~-----~~~~l~~~L~--~~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 89 E-----LQDQLRELLK--DKRCLLVLDDVWDEE 114 (287)
T ss_dssp H-----HHHHHHHHHC--CTSEEEEEEEE-SHH
T ss_pred c-----ccccchhhhc--cccceeeeeeecccc
Confidence 1 2334455555 449999999987666
No 281
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.05 E-value=0.064 Score=50.59 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.9
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELI 703 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~ 703 (915)
.+.+..|+.++|+|++|+|||||+..+.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3467889999999999999999998876
No 282
>PRK12377 putative replication protein; Provisional
Probab=93.03 E-value=0.28 Score=53.29 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=23.0
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+-+.|.|++|||||+|+..|++.+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999998764
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.01 E-value=0.45 Score=54.62 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=31.2
Q ss_pred ccccceeeecc-cccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 666 LETGIKVIDLL-CPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 666 l~TGir~ID~l-~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+...+.+++.. ..+.+|+-++++||+|+||||++..++....
T Consensus 120 l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 120 LAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred HHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33334444443 2356799999999999999999999998654
No 284
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.96 E-value=0.8 Score=44.37 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=18.8
Q ss_pred eeeccCCCCChhhHHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.|+||+||||++..+++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999888653
No 285
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.95 E-value=0.47 Score=52.94 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=28.3
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
..+++..++|.|++|+|||||+..++......
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999999876653
No 286
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=92.92 E-value=0.62 Score=53.09 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=62.4
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCC----
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNE---- 751 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~---- 751 (915)
|+....||..+|=|-||||||++..++...++.++ + +.|+.-=--..-+.+.+ +..++.++++-++=++-|.
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~~-~-v~YISTRVd~d~vy~~y--~~~~~~i~~~~vlDatQd~~~~~ 79 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDHG-N-VMYISTRVDQDTVYEMY--PWIEESIDPTNVLDATQDPFELP 79 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeehhhHHHHhccC-C-eEEEEeccCHHHHHHhh--hhhccccChhhhhhhccchhhcc
Confidence 56678899999999999999999999998776433 2 24543222233444333 3334455555555333331
Q ss_pred ----ChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhh
Q psy210 752 ----PSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAG 791 (915)
Q Consensus 752 ----~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~ 791 (915)
-|.++ ..+......-+.+-..+++.++++||---..+.+
T Consensus 80 ~~~~vp~~~-l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiieyl 122 (484)
T PF07088_consen 80 LDKDVPFER-LDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEYL 122 (484)
T ss_pred ccccCcccc-cCHHHHHHHHHHhhhcccCcEEEEecHHHHHHHh
Confidence 11111 1111122222222224999999999955444433
No 287
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.88 E-value=0.28 Score=57.24 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
..-+.|.|++|||||+|+..+++..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998764
No 288
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.88 E-value=0.12 Score=52.71 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=49.2
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc-cccEEEEEEcCCCChHhHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV-LDKVSLIYGQMNEPSGNRLRVALT 762 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~-~~~~~vv~~t~d~~~~~r~~~~~~ 762 (915)
+++|.|++|+|||+++..++.... .-++|+.-+.-.++ |+.+.+..+-. .... ..|-..|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~----~~~~~iat~~~~~~--e~~~ri~~h~~~R~~~---w~t~E~~---------- 63 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG----LQVLYIATAQPFDD--EMAARIAHHRQRRPAH---WQTVEEP---------- 63 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC----CCcEeCcCCCCChH--HHHHHHHHHHhcCCCC---CeEeccc----------
Confidence 689999999999999999886532 12467666664433 23222211100 0111 1111222
Q ss_pred HHHHHHHHHH-CCCcEEEEecchhhHHHhhh
Q psy210 763 GLSIAEEFRN-SGKDVLLFIDNIYRFTLAGT 792 (915)
Q Consensus 763 a~~~Ae~f~~-~g~~Vl~~~Ds~tr~a~A~r 792 (915)
..+++.+.+ ....=++++|++|-|....-
T Consensus 64 -~~l~~~i~~~~~~~~~VlID~Lt~~~~n~l 93 (170)
T PRK05800 64 -LDLAELLRADAAPGRCVLVDCLTTWVTNLL 93 (170)
T ss_pred -ccHHHHHHhhcCCCCEEEehhHHHHHHHHh
Confidence 234444544 22122789999999977543
No 289
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.85 E-value=0.28 Score=57.52 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=49.2
Q ss_pred ccccccceeeecccc-ccccceeeeecCCCCChhHHHHHHHHhhc-CCCeEEEEEeeccchhhHH
Q psy210 239 EPLLTGIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTIINQK-NKNVICIYVCIGQKISSLI 301 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p-igrGqr~~I~g~~g~GKt~l~l~~i~~~~-~~~~~~V~~~iGer~~ev~ 301 (915)
.-+.||+..+|.++- +-+|+=+.|-|.+|+|||+++++.+.+.. ..+-.+.|....+..+++.
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 458899999999874 55699999999999999999988877643 2344456777887776654
No 290
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.4 Score=55.07 Aligned_cols=97 Identities=18% Similarity=0.285 Sum_probs=64.1
Q ss_pred ccccccCCe---eeeccCCCCChhhHHHHHHHHHHhcCCcE-EEEEEecCCCc---hHHHHHHHhhhcCccccEEEEEEc
Q psy210 676 LCPFLKGGK---IGLFGGAGVGKTVNMMELIRNIAIEHKGC-SVFIGVGERSR---EGNDFYHEMKESNVLDKVSLIYGQ 748 (915)
Q Consensus 676 l~pigkGQr---~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~-~v~~~iGer~~---ev~e~~~~~~~~~~~~~~~vv~~t 748 (915)
|.|.-+|.+ +.|.|++|||||+++..+++.+....+.. ++|+-|=+-.. -..++++.+.
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~-------------- 98 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG-------------- 98 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC--------------
Confidence 555555544 78999999999999999999876544455 68885443332 2233333331
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 749 MNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 749 ~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
+.|.........=-.+-+++..+++.+++++|.+-.+.
T Consensus 99 --~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~ 136 (366)
T COG1474 99 --KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALV 136 (366)
T ss_pred --CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhc
Confidence 44444444555555566788888999999999877543
No 291
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.84 E-value=0.18 Score=51.53 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=49.0
Q ss_pred eeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhh
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGC 338 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~ 338 (915)
.++|.|++|+|||++|... +...+. .++|..-++..++ ++.++...+... | +.++.+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l-~~~~~~--~~~~iat~~~~~~--e~~~ri~~h~~~-R------------~~~w~t~E~~~ 64 (170)
T PRK05800 3 LILVTGGARSGKSRFAERL-AAQSGL--QVLYIATAQPFDD--EMAARIAHHRQR-R------------PAHWQTVEEPL 64 (170)
T ss_pred EEEEECCCCccHHHHHHHH-HHHcCC--CcEeCcCCCCChH--HHHHHHHHHHhc-C------------CCCCeEecccc
Confidence 5789999999999997554 333222 2568777765443 332332211100 0 01122222233
Q ss_pred hhHHHHHh-cCCcEEEEeccchhHHHHH
Q psy210 339 TIGEYFRD-LGQDCLIIYDDLTKHAWAY 365 (915)
Q Consensus 339 tiAEy~r~-~g~~Vlv~~Ddltr~a~A~ 365 (915)
.+++.+.+ ....=+|++|++|.|....
T Consensus 65 ~l~~~i~~~~~~~~~VlID~Lt~~~~n~ 92 (170)
T PRK05800 65 DLAELLRADAAPGRCVLVDCLTTWVTNL 92 (170)
T ss_pred cHHHHHHhhcCCCCEEEehhHHHHHHHH
Confidence 46666654 2222279999999998654
No 292
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.83 E-value=0.6 Score=50.13 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=30.4
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHhc----------CCcEEEEEEecCCCc
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAIE----------HKGCSVFIGVGERSR 724 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~~----------~~~~~v~~~iGer~~ 724 (915)
|.=..|+|++|+|||+|+.+++.+++.. ...-.|+.+.+|-+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 4556899999999999999999876531 122345555577654
No 293
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.83 E-value=0.095 Score=55.83 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=44.6
Q ss_pred ccceeee-cccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE--EecCCCchHHHHHHHh
Q psy210 668 TGIKVID-LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI--GVGERSREGNDFYHEM 733 (915)
Q Consensus 668 TGir~ID-~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~--~iGer~~ev~e~~~~~ 733 (915)
-|.++++ .-+.|-+|+.+.|+|++|+|||||+..+..-+......+.+-. ..+-++.|.+.+..++
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence 3444443 3357889999999999999999999998874332222222222 3677777888777654
No 294
>PF05729 NACHT: NACHT domain
Probab=92.80 E-value=0.36 Score=47.65 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=46.9
Q ss_pred eeeeecCCCCChhHHHHHHHHhh-c---CCC---eEEEEEeeccchhhHH--HHHHHHhccCCcceEEEEEecCCCCHHH
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQ-K---NKN---VICIYVCIGQKISSLI--NVINKLKYYNCMDYTVVVAATAADSAAE 329 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~-~---~~~---~~~V~~~iGer~~ev~--~~~~~l~~~~~~~~tvvv~~~a~~~~~~ 329 (915)
-+.|.|++|+|||++ +..++.+ . ..+ ..++|...+....... .+.+.+...- .... ....
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~-~~~~ 70 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQL---------PESI-APIE 70 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhh---------ccch-hhhH
Confidence 367899999999999 5565543 1 111 2345555555444322 1222221100 0000 0000
Q ss_pred hhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHH
Q psy210 330 QYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366 (915)
Q Consensus 330 r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~r 366 (915)
. ....+.++..++++|+|.+.....-..
T Consensus 71 ~---------~~~~~~~~~~~~llilDglDE~~~~~~ 98 (166)
T PF05729_consen 71 E---------LLQELLEKNKRVLLILDGLDELEEQDQ 98 (166)
T ss_pred H---------HHHHHHHcCCceEEEEechHhcccchh
Confidence 0 333445678899999999987776443
No 295
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.74 E-value=0.1 Score=56.75 Aligned_cols=55 Identities=25% Similarity=0.271 Sum_probs=41.4
Q ss_pred ccccceeeeccc-ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC
Q psy210 666 LETGIKVIDLLC-PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE 721 (915)
Q Consensus 666 l~TGir~ID~l~-pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe 721 (915)
+.||++.+|-++ -+.+|+=..|-|.||+|||+++.+++.+...++. .+|....-|
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlE 57 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLE 57 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESS
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCC
Confidence 579999999886 5778888999999999999999999999887543 444444444
No 296
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.71 E-value=0.35 Score=56.15 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=28.3
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE 721 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe 721 (915)
++..++++|++|+||||++..++..........+.++.++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 46679999999999999999999754322222333444554
No 297
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=92.65 E-value=0.58 Score=53.32 Aligned_cols=109 Identities=21% Similarity=0.269 Sum_probs=61.2
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHH
Q psy210 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAE 329 (915)
Q Consensus 250 ~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~ 329 (915)
.|+.-..||.++|=|.+|||||+++++.+-.-+..+- +.|..-=--...+.+.. ....+.++++-++-++.+ +.+
T Consensus 3 ~FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~~~-v~YISTRVd~d~vy~~y--~~~~~~i~~~~vlDatQd--~~~ 77 (484)
T PF07088_consen 3 RFFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDHGN-VMYISTRVDQDTVYEMY--PWIEESIDPTNVLDATQD--PFE 77 (484)
T ss_pred hhhcCCCCcEEEEecCCCCCceeeehhhHHHHhccCC-eEEEEeccCHHHHHHhh--hhhccccChhhhhhhccc--hhh
Confidence 3566778999999999999999999888776654332 23443322333333322 444555665555543333 121
Q ss_pred h---hhhhh--h-hhhhHHHHH---hcCCcEEEEeccchhHHH
Q psy210 330 Q---YISPY--T-GCTIGEYFR---DLGQDCLIIYDDLTKHAW 363 (915)
Q Consensus 330 r---~~~~~--~-a~tiAEy~r---~~g~~Vlv~~Ddltr~a~ 363 (915)
. ...|+ + --++-+++- ..+++.++++||---..+
T Consensus 78 ~~~~~~vp~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiie 120 (484)
T PF07088_consen 78 LPLDKDVPFERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIE 120 (484)
T ss_pred ccccccCcccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHH
Confidence 1 11222 0 112223333 258999999999444333
No 298
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.64 E-value=0.71 Score=46.94 Aligned_cols=31 Identities=29% Similarity=0.229 Sum_probs=27.1
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+.-+|.-+.|.|.+|+||||++..+++....
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999988754
No 299
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.62 E-value=1 Score=47.45 Aligned_cols=35 Identities=11% Similarity=-0.074 Sum_probs=28.9
Q ss_pred eeeecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 671 KVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 671 r~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
-.-|.-+....|...+|.|++|+|||+++..++..
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666778899999999999999999988753
No 300
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.61 E-value=0.078 Score=56.28 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.6
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+.+||.++|+|++|+|||||+..|+...
T Consensus 23 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3578999999999999999999999988654
No 301
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.50 E-value=0.34 Score=48.86 Aligned_cols=90 Identities=22% Similarity=0.207 Sum_probs=58.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~ 760 (915)
||--+-|.|-+|+|||||+..+.+.+... ...++.+=|. +++. .+-. .-.-+...|..-.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LDgD---~lR~---~l~~------------dl~fs~~dR~e~~ 60 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLDGD---NLRH---GLNA------------DLGFSKEDREENI 60 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEEHH---HHCT---TTTT------------T--SSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEecCc---chhh---ccCC------------CCCCCHHHHHHHH
Confidence 45567899999999999999999988653 4566766553 2221 1100 0123456777777
Q ss_pred HHHHHHHHHHHHCCCcEEEEecchhhHHHh
Q psy210 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 761 ~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A 790 (915)
...-.+|.-|.++|..|++=+-|.++=.+.
T Consensus 61 rr~~~~A~ll~~~G~ivIva~isp~~~~R~ 90 (156)
T PF01583_consen 61 RRIAEVAKLLADQGIIVIVAFISPYREDRE 90 (156)
T ss_dssp HHHHHHHHHHHHTTSEEEEE----SHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEeeccCchHHHH
Confidence 788899999999999999888888764433
No 302
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.49 E-value=0.081 Score=59.97 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=31.3
Q ss_pred cceeee-cccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 669 GIKVID-LLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 669 Gir~ID-~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+..++| .=+.|-+|.-+.+.|||||||||||.+||-
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 456665 667899999999999999999999999885
No 303
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.47 E-value=0.13 Score=60.23 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=47.2
Q ss_pred cccccceeeecccc-cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchH
Q psy210 665 ILETGIKVIDLLCP-FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREG 726 (915)
Q Consensus 665 ~l~TGir~ID~l~p-igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev 726 (915)
-+.||+..+|-++- +-+|+=+.|-|+||+|||+++.+++.+.+..+..-++|...-+..+++
T Consensus 177 gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 177 GVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred cccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 47899999998863 778999999999999999999999998765433334455454444444
No 304
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.45 E-value=0.086 Score=54.38 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999887643
No 305
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.45 E-value=0.11 Score=55.23 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=27.7
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999999888655
No 306
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.28 Score=56.13 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=67.9
Q ss_pred cccccceeeeccccc--cccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEE
Q psy210 240 PLLTGIKSIDSMIPI--GKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTV 317 (915)
Q Consensus 240 ~l~TGi~aiD~l~pi--grGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tv 317 (915)
.+.||+.-.|+.+== ++|+=++|=|++|.|||||.||..++.+... .|.|+.=.|....++- +...-++....+
T Consensus 74 Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qikl---RA~RL~~~~~~l 149 (456)
T COG1066 74 RISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKL---RADRLGLPTNNL 149 (456)
T ss_pred cccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH---HHHHhCCCccce
Confidence 467999999988754 6799999999999999999888888776555 6788865554433333 333334433344
Q ss_pred EEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhH
Q psy210 318 VVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 318 vv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
.+.+..+.....+ .+ ++-+--++|+||+.-.
T Consensus 150 ~l~aEt~~e~I~~------------~l-~~~~p~lvVIDSIQT~ 180 (456)
T COG1066 150 YLLAETNLEDIIA------------EL-EQEKPDLVVIDSIQTL 180 (456)
T ss_pred EEehhcCHHHHHH------------HH-HhcCCCEEEEecccee
Confidence 4443333222222 22 3345568899998643
No 307
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.31 E-value=0.86 Score=49.64 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=24.8
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+...+..+.+.||||||||+++..+++...
T Consensus 38 ~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 38 TSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345567789999999999999999988653
No 308
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.30 E-value=0.69 Score=49.41 Aligned_cols=37 Identities=14% Similarity=-0.072 Sum_probs=31.4
Q ss_pred ceeeecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 670 IKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 670 ir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
....|.-+.+.+|++.+|.|+.+.|||+++..++.+.
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~ 55 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT 55 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456666778899999999999999999999998844
No 309
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.28 Score=56.14 Aligned_cols=54 Identities=24% Similarity=0.453 Sum_probs=41.2
Q ss_pred cccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC
Q psy210 665 ILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE 721 (915)
Q Consensus 665 ~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe 721 (915)
.+.||+.=.|-.+ =+++|+=++|=|+||.||||||.+++.+++++. -++|+ .||
T Consensus 74 Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYV-sGE 129 (456)
T COG1066 74 RISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYV-SGE 129 (456)
T ss_pred cccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEE-eCC
Confidence 3667765555443 268999999999999999999999999988653 45666 454
No 310
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.27 E-value=0.099 Score=53.45 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=27.2
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999887543
No 311
>PRK06921 hypothetical protein; Provisional
Probab=92.25 E-value=0.5 Score=51.86 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=32.0
Q ss_pred eeeccccc--ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE
Q psy210 672 VIDLLCPF--LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717 (915)
Q Consensus 672 ~ID~l~pi--gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~ 717 (915)
.++-+.++ ..+.-+.+.|++|+|||+|+..|++.+...+.--++|+
T Consensus 105 ~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~ 152 (266)
T PRK06921 105 YVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYF 152 (266)
T ss_pred HHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEE
Confidence 34444433 24778999999999999999999987764312234555
No 312
>PRK09621 V-type ATP synthase subunit K; Provisional
Probab=92.24 E-value=0.17 Score=50.03 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=41.4
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCccccccc
Q psy210 1 MGNIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSL 45 (915)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l 45 (915)
|..+.+++++++++++++|+++|+|.+++.++-.+.++||..++.
T Consensus 1 ~~~~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~~ 45 (141)
T PRK09621 1 MIDMSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGKI 45 (141)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhhH
Confidence 456778999999999999999999999999999999999988884
No 313
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.22 E-value=0.43 Score=48.18 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=27.3
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCC
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGER 722 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer 722 (915)
...-+.+.-+.|.|++|+|||+|+..+....... ....+..-+-..
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~-~~~~~~~~~~~~ 63 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER-GGYVISINCDDS 63 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH-T--EEEEEEETT
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEEEecc
Confidence 3556677889999999999999999999887764 233444444443
No 314
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.20 E-value=0.1 Score=56.05 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=26.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+.+|+-+.|+|++||||||| |..|+--
T Consensus 24 L~v~~GEfvsilGpSGcGKSTL-LriiAGL 52 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTL-LRLIAGL 52 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788899999999999999999 8988864
No 315
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.19 E-value=0.1 Score=54.38 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=27.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33467889999999999999999999987754
No 316
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.18 E-value=0.099 Score=55.19 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=27.9
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999988643
No 317
>PF13479 AAA_24: AAA domain
Probab=92.16 E-value=0.38 Score=50.81 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=19.5
Q ss_pred cCCeeeeccCCCCChhhHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMEL 702 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i 702 (915)
++.|++|.|+||+|||+++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4679999999999999999765
No 318
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.11 E-value=0.1 Score=54.62 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=27.7
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999999999888643
No 319
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.10 E-value=0.1 Score=54.71 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=28.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344678899999999999999999999888643
No 320
>PRK06893 DNA replication initiation factor; Validated
Probab=92.06 E-value=0.55 Score=50.21 Aligned_cols=32 Identities=16% Similarity=0.440 Sum_probs=24.7
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~ 717 (915)
+.|+|++|+|||+|+..+++...++...+ +|.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~-~y~ 73 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTA-IYI 73 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCe-EEe
Confidence 68999999999999999998765443333 454
No 321
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.04 E-value=0.1 Score=54.43 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=27.8
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 334568899999999999999999999887643
No 322
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.03 E-value=0.1 Score=53.67 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=24.9
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELI 703 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~ 703 (915)
+++.+|++++|.|++|+|||||+..+.
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999999998774
No 323
>PRK08727 hypothetical protein; Validated
Probab=92.02 E-value=1.5 Score=47.01 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=49.8
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALT 762 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~ 762 (915)
+-+.|.|++|+|||+|+..+++...... --++|.-..+..+...+.++.+.. ..++|.--.+.-+..+.. ...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~l~~-----~dlLiIDDi~~l~~~~~~-~~~ 114 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG-RSSAYLPLQAAAGRLRDALEALEG-----RSLVALDGLESIAGQRED-EVA 114 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEEeHHHhhhhHHHHHHHHhc-----CCEEEEeCcccccCChHH-HHH
Confidence 3489999999999999999988765432 234666554433333344433322 234555444332211110 111
Q ss_pred HHHHHHHHHHCCCcEEEEec
Q psy210 763 GLSIAEEFRNSGKDVLLFID 782 (915)
Q Consensus 763 a~~~Ae~f~~~g~~Vl~~~D 782 (915)
-..+=.+..++|+.|++..+
T Consensus 115 lf~l~n~~~~~~~~vI~ts~ 134 (233)
T PRK08727 115 LFDFHNRARAAGITLLYTAR 134 (233)
T ss_pred HHHHHHHHHHcCCeEEEECC
Confidence 12233444556666776655
No 324
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.01 E-value=0.11 Score=54.82 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=26.9
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 578899999999999999999999887643
No 325
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.00 E-value=0.1 Score=54.64 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=27.1
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999887643
No 326
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.99 E-value=0.096 Score=50.65 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=26.2
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccc
Confidence 467899999999999999999998777643
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.98 E-value=0.87 Score=50.31 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=30.9
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~ 717 (915)
.|+-+++||.|.||+|||||...+++.......-|-|++
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlA 86 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLA 86 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEE
Confidence 588899999999999999999999998754322344444
No 328
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.98 E-value=0.11 Score=54.76 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=27.6
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999888643
No 329
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.95 E-value=0.89 Score=48.77 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=33.6
Q ss_pred cceeeeecCCCCChhHHHHHHHHhh------------cCCCeEEEEEeeccchhhHHHHHHH
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQ------------KNKNVICIYVCIGQKISSLINVINK 306 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~------------~~~~~~~V~~~iGer~~ev~~~~~~ 306 (915)
|.=..|+|++|+|||+|++++..+- ......|+|....+...++.+=++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~ 62 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEA 62 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHH
Confidence 3445799999999999998886542 1234567787776666555544443
No 330
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.94 E-value=0.12 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.8
Q ss_pred eeeeccCCCCChhhHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+++|.|+||+||||++..++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999865
No 331
>PRK04296 thymidine kinase; Provisional
Probab=91.93 E-value=0.63 Score=48.30 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=25.7
Q ss_pred cceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEE
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYV 291 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~ 291 (915)
|.=..|.|+.|+||||++++.+.+....+-+|++.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45567889999999999998888765445444443
No 332
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.91 E-value=0.11 Score=55.77 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=27.2
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3578899999999999999999999887543
No 333
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.89 E-value=0.12 Score=54.06 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=31.3
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcE
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC 713 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~ 713 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+.....+...+
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i 62 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV 62 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence 3446788999999999999999999999887554333334
No 334
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.88 E-value=0.11 Score=54.95 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999887543
No 335
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.84 E-value=0.11 Score=55.61 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=27.2
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3367889999999999999999999988754
No 336
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.84 E-value=0.49 Score=48.87 Aligned_cols=86 Identities=24% Similarity=0.266 Sum_probs=55.9
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCC---Cc----------hHHHHHHHhhhcCccccEEEEEE
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGER---SR----------EGNDFYHEMKESNVLDKVSLIYG 747 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer---~~----------ev~e~~~~~~~~~~~~~~~vv~~ 747 (915)
+|.=+.|+||+|+|||||+.++.... ++.+-+..--| +- ...||.+-+.....++.+.++-+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-----~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gn 77 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-----KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGN 77 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-----CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCC
Confidence 68888999999999999998887643 23233322222 22 23567777777788988888642
Q ss_pred cCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEec
Q psy210 748 QMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFID 782 (915)
Q Consensus 748 t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~D 782 (915)
-.-- ...-.|--.++|+||++-+|
T Consensus 78 yYGT-----------~~~~ve~~~~~G~~vildId 101 (191)
T COG0194 78 YYGT-----------SREPVEQALAEGKDVILDID 101 (191)
T ss_pred cccC-----------cHHHHHHHHhcCCeEEEEEe
Confidence 2111 11222444567999999998
No 337
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=91.83 E-value=0.34 Score=52.26 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=27.1
Q ss_pred eeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHH
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLIN 302 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~ 302 (915)
|+.|+|++|+|||++.+..+.. ......+||....+...+...
T Consensus 15 r~viIG~sGSGKT~li~~lL~~-~~~~f~~I~l~t~~~n~~~~~ 57 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY-LRHKFDHIFLITPEYNNEYYK 57 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh-hcccCCEEEEEecCCchhhhh
Confidence 6789999999999996666544 222223455555544444433
No 338
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.82 E-value=0.17 Score=52.10 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=50.3
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCC--cEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHK--GCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVAL 761 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~--~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~ 761 (915)
|+.|+|+||+||||++..|+....--|= +-..-..+-++ .|.....+.+...| .+| | --.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g-----~lv------~------d~i 63 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-TELGEEIKKYIDKG-----ELV------P------DEI 63 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-ChHHHHHHHHHHcC-----Ccc------c------hHH
Confidence 7899999999999999999986422121 11122234444 44444444432222 111 0 112
Q ss_pred HHHHHHHHHHHC-CCcEEEEecchhhHHHhhhhhh
Q psy210 762 TGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVS 795 (915)
Q Consensus 762 ~a~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A~reis 795 (915)
+--.+-+++... .+. .+|+|..-|+..-.+.+-
T Consensus 64 ~~~~v~~rl~~~d~~~-~~I~dg~PR~~~qa~~l~ 97 (178)
T COG0563 64 VNGLVKERLDEADCKA-GFILDGFPRTLCQARALK 97 (178)
T ss_pred HHHHHHHHHHhhcccC-eEEEeCCCCcHHHHHHHH
Confidence 233445566553 445 788887766544444433
No 339
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.81 E-value=0.11 Score=55.25 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=28.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445678899999999999999999999888644
No 340
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.80 E-value=0.11 Score=54.74 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444678899999999999999999999887543
No 341
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.76 E-value=0.11 Score=55.32 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=27.5
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6788999999999999999999998886543
No 342
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.75 E-value=0.93 Score=45.12 Aligned_cols=23 Identities=30% Similarity=0.288 Sum_probs=20.4
Q ss_pred eeeccCCCCChhhHHHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.|.|.+|+|||||+..++....
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999998765
No 343
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.73 E-value=0.12 Score=56.42 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=29.1
Q ss_pred eeecccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 672 VIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 672 ~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+++.+..+.+|+.++|+|++|+|||||+..|+.-..
T Consensus 16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344444488999999999999999999988886543
No 344
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.71 E-value=0.12 Score=54.20 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=26.8
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999888643
No 345
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.69 E-value=0.99 Score=51.95 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=52.0
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhh---cCCCeEEEEEeeccchhh---HHHHHHHHhccCCcceEEEEEecCCCCHHH
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQ---KNKNVICIYVCIGQKISS---LINVINKLKYYNCMDYTVVVAATAADSAAE 329 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~---~~~~~~~V~~~iGer~~e---v~~~~~~l~~~~~~~~tvvv~~~a~~~~~~ 329 (915)
+++.+.|.|++|+|||++ +..+.++ ...++.++|+-+-..... ..++.+.+.......+ ..+ ..
T Consensus 54 ~~~~~lI~G~~GtGKT~l-~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~--------~~~-~~ 123 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTT-VKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSS--------GLS-FD 123 (394)
T ss_pred CCCeEEEECCCCCCHHHH-HHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCC--------CCC-HH
Confidence 456789999999999999 5655553 223566777766544322 2233333322110000 000 11
Q ss_pred hhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 330 QYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 330 r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
. .--.+.+++...++.++|++|++..+.
T Consensus 124 ~-----~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 124 E-----LFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred H-----HHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 1 111234555567888999999998776
No 346
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.69 E-value=0.12 Score=55.35 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=28.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334678899999999999999999999887643
No 347
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.68 E-value=0.12 Score=55.32 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=26.9
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 578999999999999999999999888643
No 348
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.68 E-value=0.11 Score=54.59 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=27.1
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|+.++|.|++|+|||||+..|+.-.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3567899999999999999999999888644
No 349
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.67 E-value=0.12 Score=53.90 Aligned_cols=30 Identities=33% Similarity=0.324 Sum_probs=26.5
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+|++|+|||||+..|+-..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999999887643
No 350
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.60 E-value=0.12 Score=55.04 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=28.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334589999999999999999999999888643
No 351
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.60 E-value=0.14 Score=53.76 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=29.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 666889999999999999999999999887643
No 352
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.58 E-value=0.11 Score=55.35 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=26.9
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 578899999999999999999999887643
No 353
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.58 E-value=0.49 Score=55.84 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=26.7
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHhcCCcE-EEEE
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAIEHKGC-SVFI 717 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~-~v~~ 717 (915)
..+.|.|++|+|||+|+..+++.+.+.+++. ++|+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv 177 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM 177 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3478999999999999999988766544444 4555
No 354
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.58 E-value=0.12 Score=54.07 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=27.3
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.|.+|+.++|+|++|+|||||+..|+...
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478899999999999999999999888643
No 355
>PRK08118 topology modulation protein; Reviewed
Probab=91.57 E-value=0.13 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.6
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+|+.|+|++|+|||||+..++....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998653
No 356
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.54 E-value=0.12 Score=55.59 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=28.1
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 334578899999999999999999999888654
No 357
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.53 E-value=0.13 Score=55.03 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=26.7
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999988754
No 358
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.53 E-value=0.79 Score=47.74 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=24.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+|.-+.|.|.+|+|||||+..+......
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5778999999999999999999987643
No 359
>PRK04296 thymidine kinase; Provisional
Probab=91.51 E-value=0.92 Score=47.10 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
|.=..|.|++|+||||++..++.+....
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~ 29 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER 29 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc
Confidence 5567889999999999999999887543
No 360
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.51 E-value=0.13 Score=55.92 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=29.5
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
|.=+++-+|.-.+|+||.|+|||||+..|++-++
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3446789999999999999999999999998554
No 361
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.51 E-value=0.14 Score=52.41 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=28.8
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3446678999999999999999999999887543
No 362
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.50 E-value=0.95 Score=51.27 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=51.9
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCch-HHHHH---HHhhhcCccccEEEEEEcCCCChH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSRE-GNDFY---HEMKESNVLDKVSLIYGQMNEPSG 754 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~e-v~e~~---~~~~~~~~~~~~~vv~~t~d~~~~ 754 (915)
.++.-+++|.|++|+|||||+..++..+......+.|+. ++-.... ...++ ..+.+.+.- ..+++-++......
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~-~Dp~s~~~~gallgd~~r~~~~~~~-~~~~~r~~~~~~~l 130 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA-VDPSSTRTGGSILGDKTRMERLSRH-PNAFIRPSPSSGTL 130 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eCCCccccchhhhchHhHHHhhcCC-CCeEEEecCCcccc
Confidence 456679999999999999999999988765322333333 3322111 00011 112221111 22455554443221
Q ss_pred hHHHHHHHHHHHHHHHHHCCCcEEEE
Q psy210 755 NRLRVALTGLSIAEEFRNSGKDVLLF 780 (915)
Q Consensus 755 ~r~~~~~~a~~~Ae~f~~~g~~Vl~~ 780 (915)
.- .+.......+.+...|+|++|+
T Consensus 131 ~~--~a~~~~~~~~~~~~~g~d~vii 154 (332)
T PRK09435 131 GG--VARKTRETMLLCEAAGYDVILV 154 (332)
T ss_pred cc--hHHHHHHHHHHHhccCCCEEEE
Confidence 10 1223344445566679999887
No 363
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=91.49 E-value=0.12 Score=55.96 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=28.7
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445678999999999999999999999888654
No 364
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.48 E-value=0.16 Score=51.68 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=27.3
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3567899999999999999999999888654
No 365
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.48 E-value=0.15 Score=52.96 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=29.7
Q ss_pred eeecccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 672 VIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 672 ~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.|.=+.+-+|++++|.|++|+|||||+..|+....
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345446788999999999999999999998886543
No 366
>KOG0727|consensus
Probab=91.48 E-value=0.22 Score=53.30 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=42.2
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE------EecCCCchHHHHHHHhhhcCccccEEEEEEc
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI------GVGERSREGNDFYHEMKESNVLDKVSLIYGQ 748 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~------~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t 748 (915)
-+-++++||||||||+|+...+++.++. -+-|.+ -.||-+|-|+++.+--++.. -+++|..-
T Consensus 189 prgvllygppg~gktml~kava~~t~a~--firvvgsefvqkylgegprmvrdvfrlakena---psiifide 256 (408)
T KOG0727|consen 189 PRGVLLYGPPGTGKTMLAKAVANHTTAA--FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA---PSIIFIDE 256 (408)
T ss_pred CcceEEeCCCCCcHHHHHHHHhhccchh--eeeeccHHHHHHHhccCcHHHHHHHHHHhccC---CcEEEeeh
Confidence 4558999999999999999888876642 233443 46777888877776554432 34555443
No 367
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.45 E-value=0.14 Score=51.72 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=27.1
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999999887654
No 368
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.45 E-value=0.13 Score=54.52 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=27.2
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999999888654
No 369
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.44 E-value=0.13 Score=53.96 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999887643
No 370
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.41 E-value=0.13 Score=55.72 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=28.0
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 30 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 30 NINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334668899999999999999999999888643
No 371
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.40 E-value=0.14 Score=51.91 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=28.6
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
|.=+.+-+|++++|+|++|+|||||+..|+....
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3346788999999999999999999999886543
No 372
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.39 E-value=0.12 Score=54.15 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 478899999999999999999999887643
No 373
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.39 E-value=0.13 Score=54.12 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.3
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELI 703 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~ 703 (915)
+.+-+|+.+.|+||+|+|||||+..|-
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999999998654
No 374
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.38 E-value=0.31 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.8
Q ss_pred CCeeeeccCCCCChhhHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|+.+.|.|++|+|||||+..+++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 678999999999999999998874
No 375
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.37 E-value=0.13 Score=54.99 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=27.6
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34467889999999999999999999988754
No 376
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.33 E-value=0.14 Score=55.06 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=28.5
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455678899999999999999999999888643
No 377
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.30 E-value=0.14 Score=54.51 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=27.4
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+--.
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34568899999999999999999999887543
No 378
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.28 E-value=0.14 Score=55.42 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=27.7
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34678899999999999999999999887643
No 379
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.28 E-value=0.14 Score=54.53 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=26.9
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999999887643
No 380
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=91.28 E-value=0.14 Score=55.29 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=28.5
Q ss_pred eecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 673 IDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 673 ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
-|.=+.+-+|+.++|+|++|+|||||+..|+-.
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 355567889999999999999999999988753
No 381
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.28 E-value=0.14 Score=55.61 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=27.7
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33578899999999999999999999888643
No 382
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.26 E-value=0.14 Score=54.01 Aligned_cols=32 Identities=25% Similarity=0.178 Sum_probs=27.8
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|++++|+|++|+|||||+..|+.-
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred cceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 44467889999999999999999999988764
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.23 E-value=0.15 Score=51.95 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=27.5
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..++...
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999999887643
No 384
>PRK06526 transposase; Provisional
Probab=91.23 E-value=0.39 Score=52.36 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=24.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+++.+.|.||+|+|||+|+..|+.....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 5788999999999999999999887654
No 385
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=91.18 E-value=0.14 Score=54.69 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=28.1
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+-..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 334678899999999999999999999888643
No 386
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.14 E-value=0.15 Score=53.86 Aligned_cols=33 Identities=24% Similarity=0.099 Sum_probs=28.4
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 346789999999999999999999998886543
No 387
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.13 E-value=0.14 Score=53.88 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|.|++|+|||||+..|+-..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 578899999999999999999999887543
No 388
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.11 E-value=0.23 Score=52.74 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=29.0
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCc-EE-EEEEecCCCchH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKG-CS-VFIGVGERSREG 726 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~-~~-v~~~iGer~~ev 726 (915)
.+|+|||++||||||.+|+|.++..-.. .+ =.+.|+||.+-.
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa 183 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA 183 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh
Confidence 6789999999999999999987642111 11 123567776544
No 389
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.11 E-value=0.14 Score=57.73 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=27.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|.=+.+-+|.-+.|+||+||||||||.+||=
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999999998874
No 390
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=91.10 E-value=0.15 Score=54.65 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.3
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344678899999999999999999999888654
No 391
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.10 E-value=0.62 Score=49.55 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=26.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHhh---cCCCeEEEEEe
Q psy210 258 QRELIIGDRQTGKTTIAIDTIINQ---KNKNVICIYVC 292 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~~---~~~~~~~V~~~ 292 (915)
+-+-|.|++|+|||+| |++|++. ...+.+|+|.-
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEE
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeec
Confidence 3577999999999999 8888874 34676777874
No 392
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=91.08 E-value=0.14 Score=55.87 Aligned_cols=33 Identities=33% Similarity=0.411 Sum_probs=28.1
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 29 PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344678899999999999999999999887643
No 393
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.08 E-value=0.21 Score=53.46 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=25.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.|.+|++.||+|++||||||| ..+++-.
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL-~r~l~Gl 56 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTL-ARLLAGL 56 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHH-HHHHhcc
Confidence 5789999999999999999999 5666653
No 394
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.07 E-value=0.15 Score=53.23 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=27.9
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|++++|+|++|+|||||+..|+...
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334578899999999999999999999887643
No 395
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.06 E-value=0.15 Score=55.12 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=26.2
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 25 DLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999999998875
No 396
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.06 E-value=0.15 Score=53.51 Aligned_cols=29 Identities=31% Similarity=0.277 Sum_probs=26.1
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999887754
No 397
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.05 E-value=0.15 Score=54.63 Aligned_cols=30 Identities=33% Similarity=0.358 Sum_probs=26.8
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 367889999999999999999999988754
No 398
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.04 E-value=0.15 Score=54.11 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=27.7
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34678899999999999999999999888643
No 399
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.03 E-value=0.84 Score=49.44 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.4
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+-+.|.|++|+|||+|+..+++...
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3688999999999999999887654
No 400
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.03 E-value=0.15 Score=53.93 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=27.0
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999887543
No 401
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.03 E-value=0.15 Score=52.20 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=27.8
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334567899999999999999999999887644
No 402
>PRK05748 replicative DNA helicase; Provisional
Probab=90.99 E-value=0.22 Score=58.65 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=46.9
Q ss_pred ccccccceeeecccc-cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchH
Q psy210 664 NILETGIKVIDLLCP-FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREG 726 (915)
Q Consensus 664 e~l~TGir~ID~l~p-igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev 726 (915)
.-+.||+..+|-++. +-+|+=+.|-|.||+|||+++.+++.+.+..+..-++|...-+..+++
T Consensus 184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 358999999999864 778999999999999999999999998764333333444444444433
No 403
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=90.99 E-value=0.15 Score=53.37 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=27.1
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999998888643
No 404
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.98 E-value=0.49 Score=57.44 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=26.6
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCCcE-EEEE
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGC-SVFI 717 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~-~v~~ 717 (915)
-+.|.|++|+|||+|+..|++.+...+++. ++|+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi 350 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV 350 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 388999999999999999999876543343 4566
No 405
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.97 E-value=0.15 Score=52.27 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=28.2
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.=+.+.+|+..+|+|++|+|||||+..|+....
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346788999999999999999999998886543
No 406
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=90.97 E-value=0.16 Score=54.23 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=26.8
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999988764
No 407
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.97 E-value=1.5 Score=46.39 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=87.6
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhc------CccccEEEEEEc----CC
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES------NVLDKVSLIYGQ----MN 750 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~------~~~~~~~vv~~t----~d 750 (915)
-|+=+.|.|+.|+|||.|.++++.....+ +..|...-- ...+.+|++.+..- -.+...-.++.. .+
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~~--g~~v~yvsT--e~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~ 102 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLMN--GYRVTYVST--ELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVN 102 (235)
T ss_pred cCeEEEEECCCCccHHHHHHHHHHHHHhC--CceEEEEEe--chhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccc
Confidence 48999999999999999999999977654 333332222 34677888776542 123233344443 33
Q ss_pred CChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCC-CCCc
Q psy210 751 EPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST-KNGT 829 (915)
Q Consensus 751 ~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~-~~GS 829 (915)
.....+-..-.. +.|+.+-..+||++ +||++-++.--.|. ..-.|++...+. ..|-
T Consensus 103 ~~~~~~~~~L~~---l~~~~k~~~~dViI-IDSls~~~~~~~~~-------------------~vl~fm~~~r~l~d~gK 159 (235)
T COG2874 103 WGRRSARKLLDL---LLEFIKRWEKDVII-IDSLSAFATYDSED-------------------AVLNFMTFLRKLSDLGK 159 (235)
T ss_pred cChHHHHHHHHH---HHhhHHhhcCCEEE-EecccHHhhcccHH-------------------HHHHHHHHHHHHHhCCC
Confidence 322222222121 23344444567765 59999765322111 222333333321 2343
Q ss_pred eeEEEEEEecCCCCCCCcccccccccCcEEEeeHHH
Q psy210 830 ITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQI 865 (915)
Q Consensus 830 iT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~L 865 (915)
|++-|| ....+.+.+..-++++-|+++.|+-+-
T Consensus 160 -vIilTv--hp~~l~e~~~~rirs~~d~~l~L~~~~ 192 (235)
T COG2874 160 -VIILTV--HPSALDEDVLTRIRSACDVYLRLRLEE 192 (235)
T ss_pred -EEEEEe--ChhhcCHHHHHHHHHhhheeEEEEhhh
Confidence 344444 444566777777888899999987653
No 408
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.95 E-value=0.15 Score=54.70 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=27.4
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999888654
No 409
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.94 E-value=0.15 Score=54.52 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=27.9
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+-..
T Consensus 22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred eEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34578899999999999999999999888654
No 410
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.93 E-value=0.16 Score=53.65 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=26.6
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+--.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 468899999999999999999999887543
No 411
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.92 E-value=0.39 Score=49.47 Aligned_cols=49 Identities=24% Similarity=0.409 Sum_probs=34.9
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE 735 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~ 735 (915)
+.+|+-+.|+|++|+|||+|+..|++.+... .--+.|+ .+.++++.++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~-------~~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFI-------TASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEE-------EHHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEe-------ecCceeccccc
Confidence 3478889999999999999999999876642 2335666 56778888754
No 412
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=0.17 Score=59.45 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=29.9
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
-+++-+|+|+.|+|.+|+|||||++-++++..-+
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 3578999999999999999999999999876543
No 413
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.90 E-value=0.71 Score=55.64 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=22.0
Q ss_pred cCCe-eeeccCCCCChhhHHHHHHHHHH
Q psy210 681 KGGK-IGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 681 kGQr-~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+... .++.|++|+|||+++..+++.+.
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3434 57889999999999999998764
No 414
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=90.89 E-value=0.17 Score=53.71 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|.|++|+|||||+..|+-..
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 567899999999999999999999887643
No 415
>PRK08727 hypothetical protein; Validated
Probab=90.89 E-value=0.87 Score=48.86 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=25.7
Q ss_pred ceeeeecCCCCChhHHHHHHHHhh-cCCCeEEEEEeecc
Q psy210 258 QRELIIGDRQTGKTTIAIDTIINQ-KNKNVICIYVCIGQ 295 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~~-~~~~~~~V~~~iGe 295 (915)
+-+.|.|++|+|||+| +.+++++ ...+..++|.-+.+
T Consensus 42 ~~l~l~G~~G~GKThL-~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL-ALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHcCCcEEEEeHHH
Confidence 3488999999999999 6777664 23344456665544
No 416
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=90.89 E-value=0.15 Score=54.24 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=27.8
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35678999999999999999999999887543
No 417
>PRK07261 topology modulation protein; Provisional
Probab=90.87 E-value=0.16 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.7
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+|+.|+|++|+|||||+..++...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
No 418
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=90.83 E-value=0.17 Score=54.28 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=28.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344678899999999999999999999888654
No 419
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=90.79 E-value=0.16 Score=57.96 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=28.7
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+--.
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445778899999999999999999999988743
No 420
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=90.79 E-value=0.16 Score=54.65 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=27.4
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33668899999999999999999999887543
No 421
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=90.78 E-value=0.22 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=17.6
Q ss_pred eeeeccCCCCChhhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|+.|.|++++|||||+..+++.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7899999999999999998865
No 422
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=90.78 E-value=1.6 Score=44.81 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=47.4
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRV 759 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~ 759 (915)
.+|--+.|.|.+|+||||++..+....... ...++.+ .+..++. .+... ..-.+..+...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~--~~~~~~l---~~d~~r~---~l~~~------------~~~~~~~~~~~ 75 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESK--GYRVYVL---DGDNVRH---GLNKD------------LGFSEEDRKEN 75 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEE---CChHHHh---hhccc------------cCCCHHHHHHH
Confidence 467788999999999999999999876532 2222221 1223321 22111 11123344433
Q ss_pred HHHHHHHHHHHHHCCCcEEEEe
Q psy210 760 ALTGLSIAEEFRNSGKDVLLFI 781 (915)
Q Consensus 760 ~~~a~~~Ae~f~~~g~~Vl~~~ 781 (915)
......++..+.++|..|++=.
T Consensus 76 ~~~~~~~~~~~~~~G~~VI~d~ 97 (184)
T TIGR00455 76 IRRIGEVAKLFVRNGIIVITSF 97 (184)
T ss_pred HHHHHHHHHHHHcCCCEEEEec
Confidence 3334557778888897777443
No 423
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.78 E-value=0.17 Score=55.21 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=28.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578899999999999999999999887643
No 424
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=90.77 E-value=0.17 Score=52.92 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=27.7
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 33578899999999999999999999988644
No 425
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.77 E-value=0.16 Score=53.45 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=27.5
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999999888643
No 426
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=90.77 E-value=0.16 Score=55.03 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=27.8
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+-..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34678899999999999999999999888644
No 427
>KOG0057|consensus
Probab=90.74 E-value=0.24 Score=58.46 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=28.4
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
++|.||.|++|+|++|+||||++..+-+-..
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999999998654
No 428
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=90.73 E-value=0.17 Score=55.53 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.9
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44468899999999999999999999988764
No 429
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.72 E-value=0.19 Score=53.74 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=32.8
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~ 717 (915)
-+.+-||+=.+|.||+|+|||||+..|.--..-....+-|+.
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G 69 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG 69 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcC
Confidence 357889999999999999999999988865544334455554
No 430
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.71 E-value=0.32 Score=51.32 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=54.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh--cCCCeEEEEEe--eccchhhHHHHHHH----HhccCCcceEEEEEecC
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ--KNKNVICIYVC--IGQKISSLINVINK----LKYYNCMDYTVVVAATA 323 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~--~~~~~~~V~~~--iGer~~ev~~~~~~----l~~~~~~~~tvvv~~~a 323 (915)
+.+-+|+.+.|+|++|+||||| |..|..- -+.+- +.+.+ ++.+. ++..+.+. |++..+..+-++.-|-.
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTl-LRclN~LE~~~~G~-I~i~g~~~~~~~-~~~~~R~~vGmVFQ~fnLFPHlTvleNv~ 99 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTL-LRCLNGLEEPDSGS-ITVDGEDVGDKK-DILKLRRKVGMVFQQFNLFPHLTVLENVT 99 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHH-HHHHHCCcCCCCce-EEECCEeccchh-hHHHHHHhcCeecccccccccchHHHHHH
Confidence 4677899999999999999999 7777653 23332 33332 33333 55555543 45555655555555554
Q ss_pred CCCHHHhhhhhhhhhhhHHHHH
Q psy210 324 ADSAAEQYISPYTGCTIGEYFR 345 (915)
Q Consensus 324 ~~~~~~r~~~~~~a~tiAEy~r 345 (915)
-.|.-.+-.....|-..|..+-
T Consensus 100 lap~~v~~~~k~eA~~~A~~lL 121 (240)
T COG1126 100 LAPVKVKKLSKAEAREKALELL 121 (240)
T ss_pred hhhHHHcCCCHHHHHHHHHHHH
Confidence 5555555555556666664443
No 431
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=90.70 E-value=0.17 Score=54.66 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=28.1
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 18 GLNFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334678899999999999999999999887643
No 432
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=90.70 E-value=0.17 Score=52.80 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.7
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33457899999999999999999999988765
No 433
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.70 E-value=0.16 Score=56.17 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=27.9
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
=+.|-+|+.++|+|++|+|||||+..|+....
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35788999999999999999999999886543
No 434
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=90.69 E-value=0.17 Score=57.82 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=27.4
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+-+|+.++|+|++|+|||||+..|+--
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 4567889999999999999999999988753
No 435
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=90.69 E-value=3.4 Score=44.93 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.1
Q ss_pred cceeeeecCCCCChhHHHHHHHHhhc
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
--+++++|.+|+|||+| +.+|.+..
T Consensus 31 ~~~IllvG~tGvGKSSl-iNaLlg~~ 55 (249)
T cd01853 31 SLTILVLGKTGVGKSST-INSIFGER 55 (249)
T ss_pred CeEEEEECCCCCcHHHH-HHHHhCCC
Confidence 34788999999999999 78888753
No 436
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=90.69 E-value=0.17 Score=53.77 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=27.5
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+-..
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33678899999999999999999999887643
No 437
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.67 E-value=0.17 Score=54.73 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=28.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334678899999999999999999999888654
No 438
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.66 E-value=0.17 Score=54.22 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=27.7
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|.++||+|..|+|||||++.|+--
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCc
Confidence 44467999999999999999999999888753
No 439
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=90.65 E-value=0.48 Score=50.53 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.8
Q ss_pred CeeeeccCCCCChhhHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELI 703 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~ 703 (915)
-.++|.|+||+|||+++..+.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 358899999999999987664
No 440
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.64 E-value=0.17 Score=54.71 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=27.0
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 578899999999999999999999988644
No 441
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=90.61 E-value=0.17 Score=54.62 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=26.4
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 57889999999999999999999988854
No 442
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.59 E-value=0.18 Score=53.44 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=27.8
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|.|++|+|||||+..|+.-.
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33678899999999999999999999887643
No 443
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=90.56 E-value=0.18 Score=55.25 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=28.6
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455788999999999999999999999887643
No 444
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=90.56 E-value=0.18 Score=56.28 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.5
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999999888644
No 445
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.55 E-value=0.18 Score=54.33 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 21 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 21 NVTMKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred eeeEeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33467889999999999999999999988853
No 446
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=90.55 E-value=0.18 Score=53.88 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999887654
No 447
>PRK10908 cell division protein FtsE; Provisional
Probab=90.54 E-value=0.18 Score=53.26 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=27.2
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999887543
No 448
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.54 E-value=0.18 Score=55.30 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=26.9
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999999999887654
No 449
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=90.54 E-value=0.18 Score=53.83 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=28.9
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 556778999999999999999999999887643
No 450
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=90.51 E-value=0.18 Score=52.45 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=27.8
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33678899999999999999999999887644
No 451
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.48 E-value=0.18 Score=52.69 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=28.9
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
|.=+.+-+|+..+|+|++|+|||||+..|+....
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4456788999999999999999999998886543
No 452
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.47 E-value=0.17 Score=56.07 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=28.3
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334678899999999999999999999887644
No 453
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=90.46 E-value=0.2 Score=52.33 Aligned_cols=32 Identities=31% Similarity=0.566 Sum_probs=27.4
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 27 isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33567899999999999999999999887643
No 454
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.46 E-value=0.18 Score=55.10 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=26.7
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 356889999999999999999999988763
No 455
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.45 E-value=0.19 Score=54.59 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=27.7
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+-..
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33678899999999999999999999887643
No 456
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=90.45 E-value=0.18 Score=53.56 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=25.8
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+-+|+.++|+|++|+|||||+..++...
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999999888654
No 457
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=90.43 E-value=0.18 Score=57.69 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=28.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+--
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 35578899999999999999999999988864
No 458
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=90.42 E-value=0.19 Score=54.95 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=27.8
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33678899999999999999999999887643
No 459
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=90.41 E-value=0.18 Score=54.76 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=26.9
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999888643
No 460
>CHL00181 cbbX CbbX; Provisional
Probab=90.41 E-value=2.6 Score=46.81 Aligned_cols=140 Identities=13% Similarity=0.121 Sum_probs=68.1
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcC---CcEEEEE--------EecCCCchHHHHHHHhhhcCccccEEEEEE
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH---KGCSVFI--------GVGERSREGNDFYHEMKESNVLDKVSLIYG 747 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~---~~~~v~~--------~iGer~~ev~e~~~~~~~~~~~~~~~vv~~ 747 (915)
..+|-.+.+.|+||||||+++..+++...... .+-.+.+ .+|+....+.++++.. ...|+|.-
T Consensus 56 ~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a------~ggVLfID 129 (287)
T CHL00181 56 SNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA------MGGVLFID 129 (287)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc------cCCEEEEE
Confidence 33466788999999999999999988653210 1112222 3454443333333321 24567665
Q ss_pred cCCCC--h-HhHHHHHHHHHHHHHHHHHCCCcEEEEecchh-hHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhc
Q psy210 748 QMNEP--S-GNRLRVALTGLSIAEEFRNSGKDVLLFIDNIY-RFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823 (915)
Q Consensus 748 t~d~~--~-~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~t-r~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag 823 (915)
-.+.- + ..+-......-++-+.+-+...++++|+-.-. +.-..++---....+.+..--||++-..++..+.++..
T Consensus 130 E~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 130 EAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred ccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 54431 0 00001112222222333233345666554322 21111110122334555555677777777777777665
Q ss_pred C
Q psy210 824 S 824 (915)
Q Consensus 824 ~ 824 (915)
+
T Consensus 210 ~ 210 (287)
T CHL00181 210 E 210 (287)
T ss_pred H
Confidence 3
No 461
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=90.40 E-value=0.33 Score=47.90 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccc
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENS 44 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~ 44 (915)
++..+++|+.+|++.+.+|+.||.++...++++++|||.-.+
T Consensus 78 g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~ 119 (143)
T PRK06649 78 PWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFAN 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 456789999999999999999999999999999999987655
No 462
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=90.39 E-value=0.19 Score=54.26 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 23 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 33467889999999999999999999988753
No 463
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.38 E-value=0.19 Score=54.23 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=27.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3446788999999999999999999999874
No 464
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=90.38 E-value=0.18 Score=55.04 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=27.7
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 33678899999999999999999999887643
No 465
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=90.34 E-value=0.19 Score=56.86 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=30.8
Q ss_pred ceeeecc-cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 670 IKVIDLL-CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 670 ir~ID~l-~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+++|.+ +.|.+|+.++|+|++|+|||||+..|+.-.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 3455555 489999999999999999999999887643
No 466
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=90.33 E-value=0.19 Score=57.44 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=28.1
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-.
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 35567889999999999999999999998864
No 467
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.32 E-value=0.19 Score=55.66 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=27.4
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 31 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3678899999999999999999999888644
No 468
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.31 E-value=0.19 Score=54.89 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=28.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444678899999999999999999999887644
No 469
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=90.29 E-value=0.19 Score=54.78 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=27.7
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 28 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34467889999999999999999999988853
No 470
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.28 E-value=0.17 Score=52.83 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=28.0
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 334578899999999999999999999888654
No 471
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=90.28 E-value=0.23 Score=56.63 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=29.8
Q ss_pred eecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 673 IDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 673 ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+|.=+.+-+|+.++|+|++|+|||||+..|+-.
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 477788999999999999999999999988864
No 472
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.26 E-value=0.2 Score=54.01 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=28.2
Q ss_pred eecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 673 IDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 673 ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
-|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344467889999999999999999999988753
No 473
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.25 E-value=0.2 Score=53.99 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=27.7
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44467889999999999999999999988864
No 474
>PF13245 AAA_19: Part of AAA domain
Probab=90.25 E-value=0.37 Score=42.51 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=19.9
Q ss_pred CCeee-eccCCCCChhhHHHHHHHHHH
Q psy210 682 GGKIG-LFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 682 GQr~~-I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
|+++. |-||||+|||+++...+....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44444 599999999988888777665
No 475
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.25 E-value=0.18 Score=55.20 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=27.4
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 33678899999999999999999999887543
No 476
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=90.22 E-value=0.2 Score=54.90 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=27.9
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 43 INLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33578899999999999999999999888654
No 477
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.22 E-value=0.2 Score=54.18 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=26.8
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 478899999999999999999999887643
No 478
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.18 E-value=0.19 Score=55.19 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=27.2
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999887643
No 479
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.17 E-value=1.7 Score=44.02 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+|.-+.|.|.+|+||||++..++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999987754
No 480
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.16 E-value=3 Score=48.35 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=28.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEec
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVG 720 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iG 720 (915)
++.+++++|+.|+||||++..++.........+. ++.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVg-lI~aD 278 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG-FITTD 278 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEE-EEecC
Confidence 3578999999999999999999987764322343 34343
No 481
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=90.16 E-value=0.2 Score=53.39 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=28.4
Q ss_pred ceee-ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 670 IKVI-DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 670 ir~I-D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+.++ |.=+.+-+|.-+.|.||+|+||||||..+.-
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444 4456899999999999999999999976653
No 482
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=90.16 E-value=0.2 Score=53.73 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=27.3
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 41 s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3578899999999999999999999988644
No 483
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=90.13 E-value=0.2 Score=53.92 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=28.0
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+-..
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 334678899999999999999999999887544
No 484
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.13 E-value=0.21 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.0
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELI 703 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~ 703 (915)
-+-+|++++|+|++|+|||||+.-++
T Consensus 32 ~v~~Ge~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 32 VVKRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred EecCCceEEEEcCCCCcHHhHHHHHh
Confidence 37789999999999999999997555
No 485
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.12 E-value=2.5 Score=46.88 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=66.4
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHhcC---CcEEEEE--------EecCCCchHHHHHHHhhhcCccccEEEEEEcCC
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAIEH---KGCSVFI--------GVGERSREGNDFYHEMKESNVLDKVSLIYGQMN 750 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~~~---~~~~v~~--------~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d 750 (915)
|--+.+.|+||||||+++..+++.+.... .+-.+++ ++|+....+.++++.. ...++|.--.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a------~~gvL~iDEi~ 131 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA------MGGVLFIDEAY 131 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc------cCcEEEEechh
Confidence 44588999999999999988887664311 1112222 2344333333332221 23566654333
Q ss_pred CC--h-HhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhh-hhhcCCCCCCCCCcchhhHHHHHHHHHhcC
Q psy210 751 EP--S-GNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEV-SAMLGRTPSAVGYQPTLAEEMGKLQERISS 824 (915)
Q Consensus 751 ~~--~-~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~rei-s~~~ge~p~~~gyp~~l~~~l~~l~ERag~ 824 (915)
.= + ..+-......-.+.+.+-+...++.+|+-.-+.--+.+..+ -....+.+..--||+.-..++..|..+.-+
T Consensus 132 ~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 132 YLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 10 0 00111112222334444444567777665443211222111 122334555555666667777777776543
No 486
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.11 E-value=0.19 Score=53.57 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.3
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 336788999999999999999999999886543
No 487
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.11 E-value=0.21 Score=53.96 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=28.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-..
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 334578999999999999999999999887643
No 488
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=90.10 E-value=0.2 Score=55.93 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=27.4
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|+.++|.|++|+|||||+..|+-..
T Consensus 24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 24 SFTIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999887643
No 489
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.09 E-value=0.21 Score=50.65 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+..+|+|++|+|||||+..|+-..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 568899999999999999999999887643
No 490
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.08 E-value=1 Score=48.42 Aligned_cols=69 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEE---------------------EEEecCCCc---------hHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSV---------------------FIGVGERSR---------EGNDFY 730 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v---------------------~~~iGer~~---------ev~e~~ 730 (915)
.+.-+.|+||+|+|||+|+..+++...++...+.. +++|+|=.. ++-+++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~ 123 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLY 123 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHH
Q ss_pred HHhhhcCccccEEEEEEcCCCC
Q psy210 731 HEMKESNVLDKVSLIYGQMNEP 752 (915)
Q Consensus 731 ~~~~~~~~~~~~~vv~~t~d~~ 752 (915)
+.+.+.+ +..++.++...|
T Consensus 124 n~~~e~g---~~~li~ts~~~p 142 (235)
T PRK08084 124 NRILESG---RTRLLITGDRPP 142 (235)
T ss_pred HHHHHcC---CCeEEEeCCCCh
No 491
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=90.07 E-value=0.2 Score=53.60 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=26.8
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999999888643
No 492
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=90.04 E-value=0.2 Score=54.64 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=28.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|.|++|+|||||+..|+.-.
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444678899999999999999999999887643
No 493
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.04 E-value=2.7 Score=42.45 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=28.8
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHH
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN 305 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~ 305 (915)
+++.|++|+|||+++..........+.+++++-+.-+..+..+.+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~ 48 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLR 48 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHH
Confidence 5688999999999964444333333445566666655544444333
No 494
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.03 E-value=0.27 Score=53.44 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=44.3
Q ss_pred ccccceeeeccc-cccccceeeeecCCCCChhHHHHHHHHhhcC-CCeEEEEEeeccchhhHH
Q psy210 241 LLTGIKSIDSMI-PIGKGQRELIIGDRQTGKTTIAIDTIINQKN-KNVICIYVCIGQKISSLI 301 (915)
Q Consensus 241 l~TGi~aiD~l~-pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~-~~~~~V~~~iGer~~ev~ 301 (915)
+.||++.+|.++ -+.+|+=..|-|.+|+|||+++++...+... .+..++|.......+++.
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~ 64 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELA 64 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHH
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Confidence 569999999987 4667888999999999999999888777543 235567777776665543
No 495
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.03 E-value=0.21 Score=53.21 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=28.1
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|.|++|+|||||+..|+-..
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444578899999999999999999999887643
No 496
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.02 E-value=0.21 Score=54.36 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=27.2
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|+.++|+|++|+|||||+..|+-..
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3668899999999999999999999887643
No 497
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=90.02 E-value=0.34 Score=52.57 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=31.0
Q ss_pred ecccc-cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE
Q psy210 674 DLLCP-FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717 (915)
Q Consensus 674 D~l~p-igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~ 717 (915)
+.+.| .|+..++||.|+||+|||||...+++...+....|-|++
T Consensus 20 ~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlA 64 (266)
T PF03308_consen 20 KRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLA 64 (266)
T ss_dssp HHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEE
Confidence 33343 578889999999999999999999998776433455543
No 498
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.99 E-value=0.21 Score=53.95 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=26.4
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 26 TISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 35788999999999999999999999875
No 499
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.98 E-value=0.2 Score=55.43 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=28.6
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.|.+|+.++|.|++|+|||||+..|+-..
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 555678999999999999999999999887543
No 500
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.96 E-value=0.21 Score=53.86 Aligned_cols=30 Identities=27% Similarity=0.322 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 568899999999999999999999887643
Done!