Query psy210
Match_columns 915
No_of_seqs 605 out of 4323
Neff 6.7
Searched_HMMs 29240
Date Sat Aug 17 00:17:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oaa_A ATP synthase subunit al 100.0 3E-106 1E-110 919.1 36.2 448 123-583 38-490 (513)
2 2r9v_A ATP synthase subunit al 100.0 7E-104 2E-108 903.6 38.7 481 72-582 9-491 (515)
3 2qe7_A ATP synthase subunit al 100.0 3E-103 9E-108 899.2 35.4 447 123-589 38-484 (502)
4 2ck3_A ATP synthase subunit al 100.0 7E-103 2E-107 897.3 37.0 442 122-582 37-486 (510)
5 1fx0_A ATP synthase alpha chai 100.0 5E-103 2E-107 897.7 35.0 450 115-583 30-480 (507)
6 3vr4_D V-type sodium ATPase su 100.0 1.2E-96 4E-101 836.1 31.0 423 122-566 21-458 (465)
7 3gqb_B V-type ATP synthase bet 100.0 2.6E-96 9E-101 833.2 29.5 422 122-566 17-460 (464)
8 2c61_A A-type ATP synthase non 100.0 5.9E-96 2E-100 836.2 30.6 427 122-570 23-463 (469)
9 1fx0_B ATP synthase beta chain 100.0 5.5E-93 1.9E-97 813.4 23.9 338 577-914 60-405 (498)
10 2ck3_D ATP synthase subunit be 100.0 1.7E-92 5.7E-97 806.6 27.2 338 577-914 48-392 (482)
11 1fx0_B ATP synthase beta chain 100.0 1.2E-90 4.2E-95 794.0 31.6 423 116-556 22-473 (498)
12 2ck3_D ATP synthase subunit be 100.0 9.8E-90 3.3E-94 783.8 35.1 402 136-556 38-460 (482)
13 3oaa_A ATP synthase subunit al 100.0 3.7E-90 1.3E-94 787.1 26.0 334 580-915 60-408 (513)
14 2qe7_A ATP synthase subunit al 100.0 3.4E-89 1.2E-93 782.7 28.4 333 580-915 60-397 (502)
15 2c61_A A-type ATP synthase non 100.0 1.2E-89 4.2E-94 784.2 24.5 333 582-914 52-394 (469)
16 3vr4_D V-type sodium ATPase su 100.0 1.3E-89 4.5E-94 778.6 24.5 333 581-914 49-393 (465)
17 2ck3_A ATP synthase subunit al 100.0 3.4E-89 1.1E-93 784.1 27.3 335 580-915 60-405 (510)
18 3gqb_B V-type ATP synthase bet 100.0 2.5E-89 8.7E-94 776.0 26.0 334 581-915 45-397 (464)
19 2r9v_A ATP synthase subunit al 100.0 3.3E-89 1.1E-93 782.4 25.5 332 581-915 74-410 (515)
20 1fx0_A ATP synthase alpha chai 100.0 5.4E-89 1.8E-93 781.9 19.1 333 580-915 61-398 (507)
21 3vr4_A V-type sodium ATPase ca 100.0 1.1E-86 3.7E-91 766.2 27.2 429 114-560 10-555 (600)
22 3gqb_A V-type ATP synthase alp 100.0 7E-87 2.4E-91 765.0 24.0 403 122-544 12-519 (578)
23 3mfy_A V-type ATP synthase alp 100.0 3.3E-87 1.1E-91 767.4 17.3 397 130-544 21-527 (588)
24 1sky_E F1-ATPase, F1-ATP synth 100.0 5.5E-84 1.9E-88 739.3 32.1 416 123-556 13-452 (473)
25 1sky_E F1-ATPase, F1-ATP synth 100.0 7.4E-85 2.5E-89 746.5 23.3 337 578-914 46-384 (473)
26 3gqb_A V-type ATP synthase alp 100.0 3.2E-85 1.1E-89 751.3 16.9 332 579-915 36-469 (578)
27 3vr4_A V-type sodium ATPase ca 100.0 3.6E-85 1.2E-89 753.6 17.3 331 579-914 43-481 (600)
28 3mfy_A V-type ATP synthase alp 100.0 1.2E-85 4.2E-90 754.5 13.3 330 581-914 38-476 (588)
29 3l0o_A Transcription terminati 100.0 2.4E-75 8E-80 645.6 13.7 361 514-914 36-401 (427)
30 3ice_A Transcription terminati 100.0 4E-73 1.4E-77 629.4 8.7 374 501-914 19-400 (422)
31 3l0o_A Transcription terminati 100.0 4.1E-70 1.4E-74 603.8 17.0 305 173-503 94-404 (427)
32 3ice_A Transcription terminati 100.0 3.3E-66 1.1E-70 574.1 16.8 256 228-504 141-404 (422)
33 2obl_A ESCN; ATPase, hydrolase 100.0 5.9E-61 2E-65 537.0 26.0 340 189-544 2-345 (347)
34 2dpy_A FLII, flagellum-specifi 100.0 1.7E-58 5.9E-63 531.8 30.6 403 122-544 19-434 (438)
35 2obl_A ESCN; ATPase, hydrolase 100.0 7.3E-57 2.5E-61 503.9 18.4 297 614-915 2-299 (347)
36 2dpy_A FLII, flagellum-specifi 100.0 2.9E-54 9.9E-59 496.7 23.7 332 579-915 48-388 (438)
37 2zxi_A TRNA uridine 5-carboxym 100.0 1.9E-42 6.6E-47 410.4 3.1 244 43-350 289-534 (637)
38 3ces_A MNMG, tRNA uridine 5-ca 100.0 1.6E-41 5.3E-46 404.0 2.4 217 45-309 286-504 (651)
39 3g5s_A Methylenetetrahydrofola 100.0 5.3E-38 1.8E-42 349.9 5.0 142 58-208 223-384 (443)
40 3cp8_A TRNA uridine 5-carboxym 100.0 6.2E-38 2.1E-42 373.0 3.8 218 45-310 280-499 (641)
41 1wu0_A ATP synthase C chain; A 98.9 4.7E-10 1.6E-14 96.2 1.7 56 3-58 2-57 (72)
42 2x2v_A ATP synthase subunit C; 98.8 3.8E-10 1.3E-14 96.0 0.1 53 6-58 3-55 (69)
43 4f4s_A ATP synthase subunit 9, 98.8 1.9E-10 6.4E-15 98.2 -1.8 60 3-63 6-65 (76)
44 1a91_A F1FO ATPase subunit C; 98.8 1E-09 3.4E-14 95.8 1.7 55 4-58 8-62 (79)
45 2xqu_A C15_RING, ATP synthase 98.7 8.7E-10 3E-14 97.0 -0.3 58 4-61 9-66 (82)
46 2xnd_J ATP synthase lipid-bind 98.7 1.7E-09 5.9E-14 92.6 -1.1 55 3-58 4-58 (72)
47 2wgm_A ATP synthase subunit C, 98.6 3.5E-09 1.2E-13 94.4 -0.3 57 4-61 13-69 (89)
48 3cmu_A Protein RECA, recombina 98.2 1.4E-05 4.8E-10 105.3 17.5 109 238-361 1059-1171(2050)
49 3cmu_A Protein RECA, recombina 98.0 1.2E-05 4.1E-10 105.9 11.8 115 236-365 10-128 (2050)
50 3cmw_A Protein RECA, recombina 98.0 5.1E-06 1.7E-10 108.3 7.9 113 237-364 11-127 (1706)
51 2zts_A Putative uncharacterize 97.8 0.00015 5.1E-09 75.4 13.0 65 664-728 10-76 (251)
52 2bl2_A V-type sodium ATP synth 97.8 6.4E-06 2.2E-10 81.0 2.1 49 4-56 90-138 (156)
53 3io5_A Recombination and repai 97.3 0.00018 6.1E-09 78.8 6.1 109 239-362 5-124 (333)
54 3io5_A Recombination and repai 97.3 0.00039 1.3E-08 76.1 7.6 110 664-788 5-124 (333)
55 1n0w_A DNA repair protein RAD5 97.2 0.00098 3.4E-08 69.0 9.4 44 664-707 4-49 (243)
56 2cvh_A DNA repair and recombin 97.0 0.00067 2.3E-08 69.1 5.5 39 666-704 2-42 (220)
57 2zr9_A Protein RECA, recombina 96.9 0.0012 4.1E-08 73.5 7.8 110 663-788 39-152 (349)
58 3hr8_A Protein RECA; alpha and 96.9 0.0011 3.7E-08 74.0 7.2 110 664-788 40-152 (356)
59 2z43_A DNA repair and recombin 96.9 0.0015 5E-08 71.8 8.3 120 663-790 86-218 (324)
60 3lda_A DNA repair protein RAD5 96.9 0.0055 1.9E-07 69.4 13.0 45 663-707 157-203 (400)
61 4a74_A DNA repair and recombin 96.8 0.0016 5.3E-08 66.8 7.2 44 664-707 5-50 (231)
62 3hr8_A Protein RECA; alpha and 96.8 0.00069 2.4E-08 75.6 4.7 110 239-362 40-152 (356)
63 2z43_A DNA repair and recombin 96.8 0.0023 7.7E-08 70.3 8.3 117 238-364 86-218 (324)
64 2zr9_A Protein RECA, recombina 96.7 0.0012 4.1E-08 73.5 5.9 110 238-362 39-152 (349)
65 2cvh_A DNA repair and recombin 96.7 0.001 3.6E-08 67.7 4.7 52 241-295 2-55 (220)
66 1v5w_A DMC1, meiotic recombina 96.7 0.0045 1.5E-07 68.6 10.0 120 663-790 101-234 (343)
67 1u94_A RECA protein, recombina 96.7 0.0025 8.6E-08 71.1 7.8 111 663-788 41-154 (356)
68 4a74_A DNA repair and recombin 96.6 0.0041 1.4E-07 63.6 8.5 41 239-280 5-47 (231)
69 1xp8_A RECA protein, recombina 96.6 0.0027 9.1E-08 71.1 7.5 110 663-788 52-165 (366)
70 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0012 4.2E-08 67.4 4.2 63 664-727 3-67 (235)
71 2ehv_A Hypothetical protein PH 96.6 0.0012 4.1E-08 68.6 4.1 43 664-706 10-54 (251)
72 1u94_A RECA protein, recombina 96.6 0.0017 5.9E-08 72.4 5.6 110 238-362 41-154 (356)
73 1v5w_A DMC1, meiotic recombina 96.5 0.0046 1.6E-07 68.5 8.8 120 238-364 101-234 (343)
74 3v76_A Flavoprotein; structura 96.5 0.0002 7E-09 81.6 -2.3 95 57-157 270-396 (417)
75 1xp8_A RECA protein, recombina 96.4 0.0021 7E-08 72.1 5.1 110 238-362 52-165 (366)
76 1n0w_A DNA repair protein RAD5 96.4 0.0064 2.2E-07 62.7 8.1 42 239-280 4-47 (243)
77 2i1q_A DNA repair and recombin 96.3 0.0098 3.4E-07 64.9 9.5 120 238-364 77-219 (322)
78 2i1q_A DNA repair and recombin 96.3 0.0096 3.3E-07 65.0 9.1 120 663-790 77-219 (322)
79 1pzn_A RAD51, DNA repair and r 96.2 0.005 1.7E-07 68.5 6.7 120 663-790 110-246 (349)
80 1cr0_A DNA primase/helicase; R 96.2 0.011 3.8E-07 63.5 9.2 46 664-709 15-62 (296)
81 3bh0_A DNAB-like replicative h 96.1 0.015 5.2E-07 63.5 9.9 54 664-718 49-103 (315)
82 2zts_A Putative uncharacterize 96.1 0.0031 1.1E-07 65.3 4.1 63 241-303 12-77 (251)
83 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0032 1.1E-07 64.3 3.9 64 239-302 3-68 (235)
84 2dr3_A UPF0273 protein PH0284; 96.0 0.0031 1.1E-07 65.2 3.6 64 239-302 3-68 (247)
85 2dr3_A UPF0273 protein PH0284; 95.9 0.004 1.4E-07 64.4 3.9 62 664-726 3-66 (247)
86 3bh0_A DNAB-like replicative h 95.9 0.022 7.6E-07 62.1 9.9 64 239-302 49-113 (315)
87 2r6a_A DNAB helicase, replicat 95.9 0.016 5.6E-07 66.5 9.0 46 664-709 184-230 (454)
88 2bl2_A V-type sodium ATP synth 95.8 0.0068 2.3E-07 59.5 4.5 55 4-62 14-68 (156)
89 3lda_A DNA repair protein RAD5 95.6 0.016 5.5E-07 65.6 7.5 57 238-294 157-221 (400)
90 2ehv_A Hypothetical protein PH 95.5 0.0072 2.5E-07 62.6 3.9 40 239-279 10-51 (251)
91 3bs4_A Uncharacterized protein 95.5 0.023 7.9E-07 60.5 7.7 198 665-881 2-231 (260)
92 1pzn_A RAD51, DNA repair and r 95.4 0.017 5.8E-07 64.1 6.7 120 238-364 110-246 (349)
93 3bs4_A Uncharacterized protein 95.3 0.019 6.4E-07 61.2 6.1 66 241-306 3-70 (260)
94 2q6t_A DNAB replication FORK h 95.3 0.037 1.3E-06 63.3 9.0 59 664-723 181-240 (444)
95 3cmw_A Protein RECA, recombina 95.2 0.015 5.1E-07 76.3 5.9 110 238-362 361-474 (1706)
96 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.013 4.5E-07 64.2 4.4 44 662-705 102-146 (331)
97 2v1u_A Cell division control p 95.1 0.036 1.2E-06 61.0 7.9 99 680-790 42-145 (387)
98 1q57_A DNA primase/helicase; d 95.0 0.035 1.2E-06 64.5 7.8 61 665-725 223-285 (503)
99 2qby_A CDC6 homolog 1, cell di 94.7 0.053 1.8E-06 59.4 8.0 98 680-789 43-142 (386)
100 4a1f_A DNAB helicase, replicat 94.6 0.081 2.8E-06 58.4 9.1 59 664-724 27-86 (338)
101 1q57_A DNA primase/helicase; d 94.6 0.054 1.8E-06 62.9 8.1 63 239-301 222-287 (503)
102 4a1f_A DNAB helicase, replicat 94.6 0.068 2.3E-06 59.0 8.5 63 239-301 27-90 (338)
103 1nlf_A Regulatory protein REPA 94.5 0.03 1E-06 59.7 5.3 47 662-708 9-56 (279)
104 1tf7_A KAIC; homohexamer, hexa 94.5 0.16 5.5E-06 59.3 11.7 58 664-723 261-320 (525)
105 2r6a_A DNAB helicase, replicat 94.4 0.06 2E-06 61.8 7.7 62 239-300 184-247 (454)
106 1fnn_A CDC6P, cell division co 94.3 0.11 3.9E-06 57.0 9.7 92 684-787 46-137 (389)
107 3ec2_A DNA replication protein 94.2 0.037 1.3E-06 54.6 4.8 29 679-707 35-63 (180)
108 1nlf_A Regulatory protein REPA 94.2 0.042 1.4E-06 58.5 5.4 46 235-280 7-53 (279)
109 2q6t_A DNAB replication FORK h 93.9 0.1 3.4E-06 59.7 8.3 62 239-300 181-244 (444)
110 1w5s_A Origin recognition comp 93.9 0.13 4.4E-06 57.2 9.0 95 681-788 49-151 (412)
111 1zu4_A FTSY; GTPase, signal re 93.8 0.34 1.2E-05 53.0 11.8 45 679-724 102-146 (320)
112 2vhj_A Ntpase P4, P4; non- hyd 93.4 0.13 4.4E-06 56.4 7.6 44 236-280 101-146 (331)
113 1zp6_A Hypothetical protein AT 93.4 0.031 1E-06 55.5 2.5 30 676-705 3-32 (191)
114 1w5s_A Origin recognition comp 93.1 0.18 6.2E-06 56.0 8.5 93 256-362 49-151 (412)
115 2chg_A Replication factor C sm 93.0 0.17 5.8E-06 50.3 7.4 26 682-707 38-63 (226)
116 2yhs_A FTSY, cell division pro 92.9 0.31 1.1E-05 56.4 10.1 36 678-713 289-324 (503)
117 3dm5_A SRP54, signal recogniti 92.8 0.75 2.6E-05 52.5 13.0 93 681-784 99-191 (443)
118 1z6g_A Guanylate kinase; struc 92.7 0.049 1.7E-06 56.0 2.9 30 677-706 18-47 (218)
119 1jbk_A CLPB protein; beta barr 92.7 0.15 5E-06 49.5 6.2 28 680-707 41-68 (195)
120 1znw_A Guanylate kinase, GMP k 92.7 0.051 1.7E-06 55.2 2.9 29 678-706 16-44 (207)
121 2v1u_A Cell division control p 92.7 0.24 8.2E-06 54.2 8.6 94 255-364 42-145 (387)
122 4eun_A Thermoresistant glucoki 92.6 0.06 2.1E-06 54.2 3.4 41 666-706 13-53 (200)
123 3tr0_A Guanylate kinase, GMP k 92.6 0.057 1.9E-06 54.1 3.1 27 679-705 4-30 (205)
124 3bgw_A DNAB-like replicative h 92.6 0.068 2.3E-06 61.3 4.1 46 664-709 178-224 (444)
125 1l8q_A Chromosomal replication 92.6 0.16 5.6E-06 54.9 7.0 28 681-708 36-63 (324)
126 2z4s_A Chromosomal replication 92.5 0.1 3.6E-06 59.6 5.5 36 682-717 130-166 (440)
127 1fnn_A CDC6P, cell division co 92.4 0.43 1.5E-05 52.4 10.2 89 259-361 46-137 (389)
128 3uie_A Adenylyl-sulfate kinase 92.3 0.4 1.4E-05 48.1 9.1 28 680-707 23-50 (200)
129 1z6t_A APAF-1, apoptotic prote 92.3 0.16 5.4E-06 59.8 7.0 98 681-786 146-247 (591)
130 2a5y_B CED-4; apoptosis; HET: 92.3 0.1 3.4E-06 61.3 5.2 52 683-734 153-208 (549)
131 3bgw_A DNAB-like replicative h 92.3 0.07 2.4E-06 61.2 3.7 64 238-301 177-241 (444)
132 1d2n_A N-ethylmaleimide-sensit 92.1 0.52 1.8E-05 49.6 10.0 25 682-706 64-88 (272)
133 3tif_A Uncharacterized ABC tra 92.1 0.06 2.1E-06 56.2 2.6 34 672-705 20-54 (235)
134 2qby_A CDC6 homolog 1, cell di 92.1 0.18 6E-06 55.2 6.5 95 255-362 43-141 (386)
135 2p65_A Hypothetical protein PF 91.9 0.55 1.9E-05 45.3 9.2 29 680-708 41-69 (187)
136 3c8u_A Fructokinase; YP_612366 91.9 0.072 2.4E-06 54.1 2.8 29 679-707 19-47 (208)
137 2v9p_A Replication protein E1; 91.8 0.063 2.1E-06 58.5 2.5 33 674-706 118-150 (305)
138 2cbz_A Multidrug resistance-as 91.8 0.066 2.3E-06 56.0 2.6 32 675-706 24-55 (237)
139 3kl4_A SRP54, signal recogniti 91.8 1 3.5E-05 51.3 12.6 39 681-720 96-134 (433)
140 1cr0_A DNA primase/helicase; R 91.8 0.089 3E-06 56.4 3.6 41 240-280 16-58 (296)
141 1j8m_F SRP54, signal recogniti 91.7 0.78 2.7E-05 49.5 10.9 49 681-730 97-145 (297)
142 2ff7_A Alpha-hemolysin translo 91.7 0.069 2.3E-06 56.3 2.5 32 674-705 27-58 (247)
143 2pcj_A ABC transporter, lipopr 91.6 0.065 2.2E-06 55.5 2.2 31 674-704 22-52 (224)
144 3e70_C DPA, signal recognition 91.6 0.81 2.8E-05 50.2 11.2 41 680-721 127-167 (328)
145 1htw_A HI0065; nucleotide-bind 91.6 0.084 2.9E-06 51.8 2.9 30 677-706 28-57 (158)
146 3pvs_A Replication-associated 91.5 0.2 6.8E-06 57.4 6.3 24 683-706 51-74 (447)
147 1vma_A Cell division protein F 91.5 0.72 2.5E-05 50.1 10.5 44 679-723 101-144 (306)
148 1tf7_A KAIC; homohexamer, hexa 91.4 0.09 3.1E-06 61.5 3.4 44 664-707 19-65 (525)
149 4g1u_C Hemin import ATP-bindin 91.4 0.075 2.6E-06 56.6 2.5 35 671-705 25-60 (266)
150 3gfo_A Cobalt import ATP-bindi 91.4 0.076 2.6E-06 56.9 2.5 32 674-705 26-57 (275)
151 2zu0_C Probable ATP-dependent 91.4 0.091 3.1E-06 56.0 3.1 30 675-704 39-68 (267)
152 2j41_A Guanylate kinase; GMP, 91.3 0.097 3.3E-06 52.3 3.1 29 678-706 2-30 (207)
153 1sgw_A Putative ABC transporte 91.3 0.075 2.6E-06 54.8 2.3 30 676-705 29-58 (214)
154 2d2e_A SUFC protein; ABC-ATPas 91.3 0.092 3.2E-06 55.3 3.0 30 675-704 22-51 (250)
155 1g6h_A High-affinity branched- 91.3 0.082 2.8E-06 55.9 2.7 31 675-705 26-56 (257)
156 1b0u_A Histidine permease; ABC 91.3 0.081 2.8E-06 56.2 2.6 31 675-705 25-55 (262)
157 3fvq_A Fe(3+) IONS import ATP- 91.3 0.087 3E-06 58.7 2.9 35 671-705 18-53 (359)
158 1vpl_A ABC transporter, ATP-bi 91.2 0.083 2.8E-06 56.0 2.6 31 675-705 34-64 (256)
159 2olj_A Amino acid ABC transpor 91.2 0.083 2.8E-06 56.2 2.6 32 674-705 42-73 (263)
160 2pze_A Cystic fibrosis transme 91.2 0.083 2.9E-06 54.9 2.5 33 674-706 26-58 (229)
161 1lvg_A Guanylate kinase, GMP k 91.1 0.092 3.1E-06 53.0 2.7 26 681-706 3-28 (198)
162 1ji0_A ABC transporter; ATP bi 91.0 0.087 3E-06 55.2 2.5 31 675-705 25-55 (240)
163 2ixe_A Antigen peptide transpo 91.0 0.088 3E-06 56.2 2.6 32 674-705 37-68 (271)
164 2ihy_A ABC transporter, ATP-bi 91.0 0.085 2.9E-06 56.6 2.5 32 674-705 39-70 (279)
165 1mv5_A LMRA, multidrug resista 91.0 0.082 2.8E-06 55.4 2.3 31 675-705 21-51 (243)
166 2ghi_A Transport protein; mult 91.0 0.09 3.1E-06 55.8 2.6 31 675-705 39-69 (260)
167 2qm8_A GTPase/ATPase; G protei 91.0 0.17 5.8E-06 55.8 4.8 41 677-717 50-90 (337)
168 1kgd_A CASK, peripheral plasma 90.9 0.11 3.8E-06 51.4 3.1 26 681-706 4-29 (180)
169 2eyu_A Twitching motility prot 90.9 0.11 3.9E-06 55.0 3.4 36 672-708 16-51 (261)
170 2qi9_C Vitamin B12 import ATP- 90.9 0.09 3.1E-06 55.5 2.5 32 674-705 18-49 (249)
171 3lnc_A Guanylate kinase, GMP k 90.9 0.088 3E-06 54.2 2.3 28 678-705 23-51 (231)
172 3rlf_A Maltose/maltodextrin im 90.8 0.11 3.6E-06 58.4 3.1 35 671-705 17-52 (381)
173 1z47_A CYSA, putative ABC-tran 90.8 0.11 3.7E-06 57.9 3.0 31 674-704 33-63 (355)
174 2yyz_A Sugar ABC transporter, 90.7 0.11 3.8E-06 57.8 3.1 31 674-704 21-51 (359)
175 2nq2_C Hypothetical ABC transp 90.7 0.096 3.3E-06 55.4 2.5 31 675-705 24-54 (253)
176 2yz2_A Putative ABC transporte 90.7 0.1 3.4E-06 55.6 2.6 31 675-705 26-56 (266)
177 3te6_A Regulatory protein SIR3 90.6 0.69 2.4E-05 50.5 9.3 90 679-788 42-145 (318)
178 1v43_A Sugar-binding transport 90.6 0.11 3.9E-06 58.0 3.1 31 674-704 29-59 (372)
179 1zp6_A Hypothetical protein AT 90.6 0.17 5.8E-06 50.0 4.1 34 251-285 3-36 (191)
180 2it1_A 362AA long hypothetical 90.6 0.11 3.9E-06 57.8 3.1 32 674-705 21-52 (362)
181 2kjq_A DNAA-related protein; s 90.6 0.23 7.8E-06 47.9 4.9 28 681-708 35-62 (149)
182 1c9k_A COBU, adenosylcobinamid 90.5 0.12 3.9E-06 52.0 2.7 85 260-365 2-89 (180)
183 3vaa_A Shikimate kinase, SK; s 90.4 0.14 4.9E-06 51.4 3.4 29 678-706 21-49 (199)
184 1g29_1 MALK, maltose transport 90.4 0.12 4.1E-06 57.8 3.0 32 674-705 21-52 (372)
185 2jeo_A Uridine-cytidine kinase 90.4 0.12 3.9E-06 54.0 2.7 30 677-706 20-49 (245)
186 3uk6_A RUVB-like 2; hexameric 90.4 0.62 2.1E-05 51.0 8.8 26 682-707 70-95 (368)
187 3b85_A Phosphate starvation-in 90.3 0.12 4E-06 53.1 2.6 34 679-713 19-52 (208)
188 4gp7_A Metallophosphoesterase; 90.3 0.1 3.6E-06 51.3 2.2 25 677-701 4-28 (171)
189 1jbk_A CLPB protein; beta barr 90.3 0.58 2E-05 45.1 7.6 26 255-281 41-66 (195)
190 3gd7_A Fusion complex of cysti 90.2 0.12 4.2E-06 58.1 2.9 30 675-704 40-69 (390)
191 2i3b_A HCR-ntpase, human cance 90.1 0.15 5.1E-06 51.4 3.2 26 682-707 1-26 (189)
192 3bos_A Putative DNA replicatio 90.1 0.086 3E-06 53.6 1.4 33 248-281 43-75 (242)
193 3d31_A Sulfate/molybdate ABC t 90.0 0.1 3.5E-06 57.9 2.0 31 674-704 18-48 (348)
194 3b9q_A Chloroplast SRP recepto 90.0 0.24 8.2E-06 53.7 4.9 36 678-713 96-131 (302)
195 3asz_A Uridine kinase; cytidin 89.9 0.13 4.4E-06 51.9 2.6 28 679-706 3-30 (211)
196 1rj9_A FTSY, signal recognitio 89.9 0.26 9E-06 53.5 5.1 31 679-709 99-129 (304)
197 3tui_C Methionine import ATP-b 89.8 0.15 5.1E-06 56.9 3.1 35 670-704 41-76 (366)
198 4b4t_I 26S protease regulatory 89.6 0.49 1.7E-05 53.8 7.2 55 685-747 219-282 (437)
199 2p67_A LAO/AO transport system 89.6 1.3 4.5E-05 48.5 10.6 41 677-717 51-91 (341)
200 2bbs_A Cystic fibrosis transme 89.5 0.13 4.6E-06 55.5 2.4 31 675-705 57-87 (290)
201 1ls1_A Signal recognition part 89.5 1.3 4.6E-05 47.5 10.3 43 681-724 97-139 (295)
202 3nh6_A ATP-binding cassette SU 89.4 0.11 3.6E-06 56.7 1.6 32 675-706 73-104 (306)
203 1sq5_A Pantothenate kinase; P- 89.4 0.24 8.2E-06 53.7 4.4 30 678-707 76-105 (308)
204 3bos_A Putative DNA replicatio 89.4 0.32 1.1E-05 49.3 5.1 40 679-719 49-88 (242)
205 2qt1_A Nicotinamide riboside k 89.3 0.16 5.6E-06 51.1 2.8 30 676-705 15-44 (207)
206 1vt4_I APAF-1 related killer D 89.3 0.72 2.5E-05 57.9 8.9 100 682-786 150-255 (1221)
207 2pjz_A Hypothetical protein ST 89.3 0.15 5.1E-06 54.3 2.5 29 676-705 25-53 (263)
208 1rz3_A Hypothetical protein rb 89.2 0.3 1E-05 49.2 4.7 30 678-707 18-47 (201)
209 1oxx_K GLCV, glucose, ABC tran 89.2 0.1 3.6E-06 57.9 1.3 31 674-704 23-53 (353)
210 2qby_B CDC6 homolog 3, cell di 89.1 0.38 1.3E-05 52.9 5.7 28 680-707 43-70 (384)
211 1y63_A LMAJ004144AAA protein; 89.1 0.22 7.6E-06 49.4 3.5 28 678-705 6-33 (184)
212 1znw_A Guanylate kinase, GMP k 88.8 0.21 7.3E-06 50.5 3.2 29 253-282 16-44 (207)
213 1ye8_A Protein THEP1, hypothet 88.8 0.2 6.8E-06 49.9 2.9 24 683-706 1-24 (178)
214 1kag_A SKI, shikimate kinase I 88.7 0.2 6.9E-06 48.6 2.9 26 681-706 3-28 (173)
215 3t15_A Ribulose bisphosphate c 88.7 0.27 9.1E-06 52.9 4.1 22 685-706 39-60 (293)
216 3ney_A 55 kDa erythrocyte memb 88.6 6.5 0.00022 39.8 14.0 27 253-280 15-41 (197)
217 3ney_A 55 kDa erythrocyte memb 88.5 0.23 7.9E-06 50.5 3.2 28 678-705 15-42 (197)
218 2og2_A Putative signal recogni 88.4 0.36 1.2E-05 53.7 4.9 31 679-709 154-184 (359)
219 1s96_A Guanylate kinase, GMP k 88.3 0.21 7.3E-06 51.5 2.9 28 679-706 13-40 (219)
220 2ffh_A Protein (FFH); SRP54, s 88.2 1.9 6.6E-05 48.9 10.9 45 681-726 97-141 (425)
221 1yqt_A RNAse L inhibitor; ATP- 88.2 0.27 9.1E-06 57.7 3.9 33 672-704 37-69 (538)
222 2b8t_A Thymidine kinase; deoxy 88.1 1.4 4.6E-05 45.7 8.8 124 255-400 10-147 (223)
223 3a00_A Guanylate kinase, GMP k 88.1 0.23 7.8E-06 49.4 2.8 25 682-706 1-25 (186)
224 3ec2_A DNA replication protein 88.1 0.25 8.6E-06 48.5 3.1 27 254-281 35-61 (180)
225 3aez_A Pantothenate kinase; tr 88.0 0.23 7.7E-06 54.2 3.0 30 678-707 86-115 (312)
226 3sfz_A APAF-1, apoptotic pepti 88.0 0.33 1.1E-05 61.7 5.0 40 683-722 148-190 (1249)
227 1knq_A Gluconate kinase; ALFA/ 88.0 0.24 8.1E-06 48.3 2.8 27 680-706 6-32 (175)
228 1z6g_A Guanylate kinase; struc 87.7 0.26 9E-06 50.5 3.1 30 252-282 18-47 (218)
229 2x8a_A Nuclear valosin-contain 87.7 0.23 7.8E-06 53.0 2.7 27 678-706 42-68 (274)
230 3tau_A Guanylate kinase, GMP k 87.6 0.27 9.2E-06 49.9 3.1 27 680-706 6-32 (208)
231 3tr0_A Guanylate kinase, GMP k 87.6 0.28 9.7E-06 48.9 3.2 27 254-281 4-30 (205)
232 3tif_A Uncharacterized ABC tra 87.6 0.26 8.7E-06 51.4 2.9 30 252-282 26-55 (235)
233 2p5t_B PEZT; postsegregational 87.5 0.92 3.2E-05 47.4 7.2 30 677-706 27-56 (253)
234 2onk_A Molybdate/tungstate ABC 87.5 0.26 9E-06 51.5 3.0 32 673-705 16-47 (240)
235 1htw_A HI0065; nucleotide-bind 87.5 0.29 1E-05 47.8 3.1 29 252-281 28-56 (158)
236 1ixz_A ATP-dependent metallopr 87.4 0.25 8.4E-06 51.5 2.7 27 678-706 47-73 (254)
237 1t9h_A YLOQ, probable GTPase E 87.4 0.12 4.1E-06 56.3 0.3 33 673-705 164-196 (307)
238 1pui_A ENGB, probable GTP-bind 87.3 0.12 4.2E-06 51.6 0.3 33 671-704 16-48 (210)
239 2bbw_A Adenylate kinase 4, AK4 87.3 0.31 1.1E-05 50.6 3.4 26 681-706 26-51 (246)
240 2wwf_A Thymidilate kinase, put 87.2 0.53 1.8E-05 47.1 5.0 30 679-708 7-36 (212)
241 4eun_A Thermoresistant glucoki 87.2 0.3 1E-05 49.0 3.1 40 242-282 14-53 (200)
242 1lw7_A Transcriptional regulat 87.1 0.24 8.2E-06 54.9 2.5 29 678-706 164-194 (365)
243 2w58_A DNAI, primosome compone 87.0 0.54 1.8E-05 46.9 4.9 26 683-708 55-80 (202)
244 2ff7_A Alpha-hemolysin translo 87.0 0.27 9.3E-06 51.6 2.7 30 252-282 30-59 (247)
245 2cbz_A Multidrug resistance-as 86.9 0.29 1E-05 51.0 2.9 29 252-281 26-54 (237)
246 4g1u_C Hemin import ATP-bindin 86.9 0.27 9.3E-06 52.3 2.7 29 252-281 32-60 (266)
247 4edh_A DTMP kinase, thymidylat 86.8 2.9 9.8E-05 42.7 10.3 53 681-735 5-57 (213)
248 3j16_B RLI1P; ribosome recycli 86.8 0.35 1.2E-05 57.5 3.9 33 672-704 93-125 (608)
249 1cke_A CK, MSSA, protein (cyti 86.8 0.32 1.1E-05 49.4 3.1 25 682-706 5-29 (227)
250 2px0_A Flagellar biosynthesis 86.6 0.89 3E-05 49.0 6.7 53 680-732 103-155 (296)
251 3cm0_A Adenylate kinase; ATP-b 86.6 0.3 1E-05 47.9 2.7 26 681-706 3-28 (186)
252 2pze_A Cystic fibrosis transme 86.5 0.3 1E-05 50.7 2.7 30 252-282 29-58 (229)
253 1l8q_A Chromosomal replication 86.5 0.68 2.3E-05 50.0 5.7 37 256-293 36-73 (324)
254 1z6t_A APAF-1, apoptotic prote 86.5 1.5 5.2E-05 51.3 9.1 40 256-296 146-190 (591)
255 3pfi_A Holliday junction ATP-d 86.5 0.71 2.4E-05 50.0 5.8 24 683-706 56-79 (338)
256 1mv5_A LMRA, multidrug resista 86.5 0.29 1E-05 51.1 2.6 29 252-281 23-51 (243)
257 2qor_A Guanylate kinase; phosp 86.4 0.36 1.2E-05 48.6 3.2 28 679-706 9-36 (204)
258 1vpl_A ABC transporter, ATP-bi 86.4 0.31 1.1E-05 51.6 2.8 30 252-282 36-65 (256)
259 2npi_A Protein CLP1; CLP1-PCF1 86.4 0.26 8.9E-06 56.7 2.4 32 675-706 131-162 (460)
260 2pcj_A ABC transporter, lipopr 86.4 0.29 1E-05 50.5 2.5 30 252-282 25-54 (224)
261 3bk7_A ABC transporter ATP-bin 86.2 0.34 1.2E-05 57.7 3.4 33 672-704 107-139 (607)
262 2bdt_A BH3686; alpha-beta prot 86.2 0.29 1E-05 48.4 2.3 23 682-704 2-24 (189)
263 4b4t_K 26S protease regulatory 86.1 0.65 2.2E-05 52.8 5.5 23 685-707 209-231 (428)
264 2orw_A Thymidine kinase; TMTK, 86.1 0.58 2E-05 46.7 4.5 42 681-722 2-44 (184)
265 2p65_A Hypothetical protein PF 86.1 0.97 3.3E-05 43.5 6.1 26 255-281 41-66 (187)
266 3n70_A Transport activator; si 86.1 0.89 3.1E-05 43.1 5.7 26 681-706 23-48 (145)
267 4b4t_J 26S protease regulatory 86.1 0.73 2.5E-05 52.0 5.7 23 685-707 185-207 (405)
268 2ghi_A Transport protein; mult 86.1 0.48 1.7E-05 50.1 4.1 30 252-282 41-70 (260)
269 3c8u_A Fructokinase; YP_612366 86.0 0.36 1.2E-05 48.8 3.0 27 254-281 19-45 (208)
270 1kht_A Adenylate kinase; phosp 86.0 0.58 2E-05 45.8 4.4 27 681-707 2-28 (192)
271 1nn5_A Similar to deoxythymidy 86.0 0.64 2.2E-05 46.5 4.8 30 679-708 6-35 (215)
272 1b0u_A Histidine permease; ABC 86.0 0.34 1.2E-05 51.3 2.9 31 251-282 26-56 (262)
273 3gfo_A Cobalt import ATP-bindi 85.8 0.34 1.2E-05 51.8 2.8 31 251-282 28-58 (275)
274 1iy2_A ATP-dependent metallopr 85.8 0.33 1.1E-05 51.4 2.7 27 678-706 71-97 (278)
275 1g6h_A High-affinity branched- 85.8 0.37 1.3E-05 50.9 3.0 30 252-282 28-57 (257)
276 2yv5_A YJEQ protein; hydrolase 85.7 0.23 8E-06 53.7 1.5 31 673-703 156-186 (302)
277 3te6_A Regulatory protein SIR3 85.7 0.72 2.5E-05 50.4 5.4 89 254-362 42-145 (318)
278 2qp9_X Vacuolar protein sortin 85.6 1.7 5.9E-05 47.8 8.5 24 683-706 85-108 (355)
279 2olj_A Amino acid ABC transpor 85.6 0.37 1.2E-05 51.2 2.9 31 251-282 44-74 (263)
280 4b4t_M 26S protease regulatory 85.6 0.66 2.3E-05 52.9 5.2 23 684-706 217-239 (434)
281 2yvu_A Probable adenylyl-sulfa 85.6 0.73 2.5E-05 45.4 4.9 29 680-708 11-39 (186)
282 3v9p_A DTMP kinase, thymidylat 85.5 3.2 0.00011 42.9 9.9 97 680-792 23-128 (227)
283 1a5t_A Delta prime, HOLB; zinc 85.5 1.2 4.3E-05 48.4 7.2 23 685-707 27-49 (334)
284 2c9o_A RUVB-like 1; hexameric 85.4 0.85 2.9E-05 52.1 6.1 26 682-707 63-88 (456)
285 2kjq_A DNAA-related protein; s 85.4 0.33 1.1E-05 46.8 2.2 25 256-281 35-59 (149)
286 3tau_A Guanylate kinase, GMP k 85.4 0.74 2.5E-05 46.5 5.0 26 256-282 7-32 (208)
287 2d2e_A SUFC protein; ABC-ATPas 85.4 0.4 1.4E-05 50.4 3.0 29 252-281 24-52 (250)
288 4e22_A Cytidylate kinase; P-lo 85.4 0.39 1.3E-05 50.3 2.9 27 680-706 25-51 (252)
289 2ihy_A ABC transporter, ATP-bi 85.4 0.37 1.3E-05 51.6 2.8 31 251-282 41-71 (279)
290 2ixe_A Antigen peptide transpo 85.3 0.39 1.3E-05 51.2 2.9 30 252-282 40-69 (271)
291 1ji0_A ABC transporter; ATP bi 85.3 0.38 1.3E-05 50.2 2.8 30 252-282 27-56 (240)
292 3fvq_A Fe(3+) IONS import ATP- 85.3 0.38 1.3E-05 53.5 2.9 33 249-282 22-54 (359)
293 2v9p_A Replication protein E1; 85.3 0.36 1.2E-05 52.5 2.6 32 250-282 119-150 (305)
294 2zu0_C Probable ATP-dependent 85.3 0.41 1.4E-05 50.8 3.1 29 252-281 41-69 (267)
295 3uk6_A RUVB-like 2; hexameric 85.3 2 6.7E-05 46.9 8.7 28 257-285 70-97 (368)
296 3b5x_A Lipid A export ATP-bind 85.2 0.36 1.2E-05 57.1 2.8 33 675-707 362-394 (582)
297 2ewv_A Twitching motility prot 85.1 0.6 2E-05 52.1 4.5 30 679-708 133-162 (372)
298 2qi9_C Vitamin B12 import ATP- 85.1 0.4 1.4E-05 50.5 2.8 31 251-282 20-50 (249)
299 4gp7_A Metallophosphoesterase; 85.0 0.34 1.2E-05 47.6 2.1 24 252-276 4-27 (171)
300 3eie_A Vacuolar protein sortin 85.0 1 3.4E-05 48.8 6.1 24 683-706 52-75 (322)
301 2j41_A Guanylate kinase; GMP, 84.9 0.47 1.6E-05 47.2 3.2 29 253-282 2-30 (207)
302 2yz2_A Putative ABC transporte 84.8 0.42 1.5E-05 50.7 2.9 30 252-282 28-57 (266)
303 1lvg_A Guanylate kinase, GMP k 84.7 0.44 1.5E-05 48.0 2.9 25 256-281 3-27 (198)
304 2z4s_A Chromosomal replication 84.7 1.2 4E-05 50.8 6.7 36 257-293 130-168 (440)
305 2z0h_A DTMP kinase, thymidylat 84.7 1.3 4.6E-05 43.4 6.4 25 684-708 2-26 (197)
306 2nq2_C Hypothetical ABC transp 84.7 0.41 1.4E-05 50.4 2.7 31 252-283 26-56 (253)
307 1iqp_A RFCS; clamp loader, ext 84.7 2.3 8E-05 45.1 8.8 27 681-707 45-71 (327)
308 3iij_A Coilin-interacting nucl 84.6 0.55 1.9E-05 46.0 3.4 27 680-706 9-35 (180)
309 3jvv_A Twitching mobility prot 84.5 0.73 2.5E-05 51.1 4.8 30 679-708 120-149 (356)
310 1z47_A CYSA, putative ABC-tran 84.5 0.45 1.5E-05 52.8 3.0 33 249-282 33-65 (355)
311 2yyz_A Sugar ABC transporter, 84.4 0.47 1.6E-05 52.8 3.1 33 249-282 21-53 (359)
312 3rlf_A Maltose/maltodextrin im 84.4 0.47 1.6E-05 53.2 3.1 32 250-282 22-53 (381)
313 2r8r_A Sensor protein; KDPD, P 84.3 0.83 2.8E-05 47.5 4.8 161 684-883 8-191 (228)
314 4b4t_L 26S protease subunit RP 84.3 1 3.5E-05 51.3 6.0 24 684-707 217-240 (437)
315 2it1_A 362AA long hypothetical 84.2 0.48 1.6E-05 52.8 3.1 33 250-283 22-54 (362)
316 1sgw_A Putative ABC transporte 84.2 0.81 2.8E-05 47.0 4.6 31 252-283 30-60 (214)
317 1ex7_A Guanylate kinase; subst 84.2 0.69 2.4E-05 46.5 4.0 83 260-356 4-100 (186)
318 3b85_A Phosphate starvation-in 84.2 0.45 1.5E-05 48.7 2.7 27 254-281 19-45 (208)
319 1v43_A Sugar-binding transport 84.2 0.48 1.6E-05 52.9 3.1 32 250-282 30-61 (372)
320 2gza_A Type IV secretion syste 84.0 0.32 1.1E-05 54.1 1.5 31 677-707 170-200 (361)
321 1kgd_A CASK, peripheral plasma 83.9 0.55 1.9E-05 46.3 3.1 25 256-281 4-28 (180)
322 1u0l_A Probable GTPase ENGC; p 83.9 0.25 8.5E-06 53.4 0.6 32 673-704 160-191 (301)
323 2x8a_A Nuclear valosin-contain 83.9 0.68 2.3E-05 49.2 4.0 29 254-285 43-71 (274)
324 2chq_A Replication factor C sm 83.8 1 3.5E-05 47.8 5.5 27 681-707 37-63 (319)
325 1g29_1 MALK, maltose transport 83.8 0.5 1.7E-05 52.8 3.0 33 249-282 21-53 (372)
326 2rcn_A Probable GTPase ENGC; Y 83.8 0.3 1E-05 54.3 1.2 31 674-704 207-237 (358)
327 3p32_A Probable GTPase RV1496/ 83.7 4.3 0.00015 44.6 10.6 37 680-716 77-113 (355)
328 2www_A Methylmalonic aciduria 83.7 0.87 3E-05 50.2 4.9 36 682-717 74-109 (349)
329 2gj8_A MNME, tRNA modification 83.7 0.45 1.5E-05 46.3 2.3 25 681-705 3-27 (172)
330 1zu4_A FTSY; GTPase, signal re 83.7 3.6 0.00012 44.8 9.8 27 253-280 101-127 (320)
331 2qby_B CDC6 homolog 3, cell di 83.5 1.2 4.1E-05 48.8 6.0 39 256-295 44-91 (384)
332 2qgz_A Helicase loader, putati 83.5 0.94 3.2E-05 49.0 5.0 27 681-707 151-177 (308)
333 2pez_A Bifunctional 3'-phospho 83.5 0.59 2E-05 45.7 3.1 27 681-707 4-30 (179)
334 2i3b_A HCR-ntpase, human cance 83.4 0.56 1.9E-05 47.2 3.0 24 257-281 1-24 (189)
335 2bbs_A Cystic fibrosis transme 83.4 0.48 1.6E-05 51.1 2.6 30 252-282 59-88 (290)
336 3kb2_A SPBC2 prophage-derived 83.3 0.58 2E-05 45.0 2.9 23 684-706 3-25 (173)
337 2j37_W Signal recognition part 83.2 6.2 0.00021 45.8 12.0 34 682-715 101-134 (504)
338 1in4_A RUVB, holliday junction 83.2 0.83 2.8E-05 49.9 4.5 28 258-286 52-79 (334)
339 2xxa_A Signal recognition part 83.1 3.9 0.00013 46.4 10.2 40 683-723 101-141 (433)
340 1yqt_A RNAse L inhibitor; ATP- 83.1 0.51 1.7E-05 55.3 2.8 34 247-281 37-70 (538)
341 3lnc_A Guanylate kinase, GMP k 83.0 0.47 1.6E-05 48.7 2.3 28 253-281 23-51 (231)
342 2a5y_B CED-4; apoptosis; HET: 83.0 1.2 4.1E-05 52.1 6.0 47 258-306 153-206 (549)
343 3nwj_A ATSK2; P loop, shikimat 83.0 0.44 1.5E-05 50.2 2.0 30 677-706 40-72 (250)
344 4b4t_J 26S protease regulatory 83.0 1.4 4.7E-05 49.7 6.2 30 255-287 182-211 (405)
345 2jeo_A Uridine-cytidine kinase 82.9 0.61 2.1E-05 48.4 3.1 29 252-281 20-48 (245)
346 2yl4_A ATP-binding cassette SU 82.8 0.48 1.6E-05 56.2 2.5 33 674-706 362-394 (595)
347 3b60_A Lipid A export ATP-bind 82.8 0.46 1.6E-05 56.2 2.3 33 674-706 361-393 (582)
348 3gd7_A Fusion complex of cysti 82.7 0.56 1.9E-05 52.7 2.9 29 252-281 42-70 (390)
349 1ixz_A ATP-dependent metallopr 82.7 0.91 3.1E-05 47.1 4.4 30 254-286 48-77 (254)
350 1pui_A ENGB, probable GTP-bind 82.6 0.31 1.1E-05 48.6 0.7 32 247-280 17-48 (210)
351 2plr_A DTMP kinase, probable t 82.6 0.66 2.2E-05 46.2 3.1 28 681-708 3-30 (213)
352 3d31_A Sulfate/molybdate ABC t 82.6 0.43 1.5E-05 52.9 1.8 32 250-282 19-50 (348)
353 3trf_A Shikimate kinase, SK; a 82.6 0.72 2.4E-05 45.2 3.3 25 682-706 5-29 (185)
354 1zuh_A Shikimate kinase; alpha 82.6 0.7 2.4E-05 44.6 3.2 24 683-706 8-31 (168)
355 3asz_A Uridine kinase; cytidin 82.6 0.6 2E-05 46.9 2.8 27 254-281 3-29 (211)
356 3fb4_A Adenylate kinase; psych 82.4 0.67 2.3E-05 46.7 3.1 23 684-706 2-24 (216)
357 2pjz_A Hypothetical protein ST 82.2 0.61 2.1E-05 49.5 2.8 29 252-282 26-54 (263)
358 3dl0_A Adenylate kinase; phosp 82.1 0.67 2.3E-05 46.8 3.0 23 684-706 2-24 (216)
359 3tui_C Methionine import ATP-b 82.0 0.66 2.3E-05 51.7 3.1 35 246-281 42-77 (366)
360 3ozx_A RNAse L inhibitor; ATP 82.0 0.51 1.8E-05 55.3 2.3 30 677-706 289-318 (538)
361 2eyu_A Twitching motility prot 82.0 0.57 1.9E-05 49.6 2.5 33 247-281 16-48 (261)
362 3vfd_A Spastin; ATPase, microt 81.9 6 0.00021 43.8 11.0 25 682-706 148-172 (389)
363 3qf4_B Uncharacterized ABC tra 81.8 0.53 1.8E-05 55.8 2.4 30 676-705 375-404 (598)
364 1njg_A DNA polymerase III subu 81.7 2.2 7.5E-05 42.5 6.7 22 259-281 47-68 (250)
365 3bk7_A ABC transporter ATP-bin 81.7 0.61 2.1E-05 55.5 2.8 34 247-281 107-140 (607)
366 2iw3_A Elongation factor 3A; a 81.6 0.63 2.2E-05 58.2 3.0 30 675-704 454-483 (986)
367 2if2_A Dephospho-COA kinase; a 81.6 0.63 2.2E-05 46.4 2.5 21 684-704 3-23 (204)
368 2pt7_A CAG-ALFA; ATPase, prote 81.6 0.34 1.2E-05 53.1 0.6 31 677-707 166-196 (330)
369 3nh6_A ATP-binding cassette SU 81.6 0.54 1.9E-05 51.1 2.2 30 252-282 75-104 (306)
370 4b4t_H 26S protease regulatory 81.4 1.6 5.4E-05 50.0 6.0 24 684-707 245-268 (467)
371 2pbr_A DTMP kinase, thymidylat 81.3 2.1 7E-05 41.9 6.2 24 684-707 2-25 (195)
372 1svm_A Large T antigen; AAA+ f 81.3 0.6 2.1E-05 52.2 2.5 30 677-706 164-193 (377)
373 2c95_A Adenylate kinase 1; tra 81.3 0.81 2.8E-05 45.0 3.2 27 680-706 7-33 (196)
374 1p9r_A General secretion pathw 81.2 0.96 3.3E-05 51.3 4.1 28 680-707 165-192 (418)
375 1xwi_A SKD1 protein; VPS4B, AA 81.2 2.2 7.5E-05 46.3 6.9 24 683-706 46-69 (322)
376 3lv8_A DTMP kinase, thymidylat 81.1 7.1 0.00024 40.5 10.5 52 681-733 26-77 (236)
377 1s96_A Guanylate kinase, GMP k 81.0 0.8 2.7E-05 47.1 3.1 28 255-283 14-41 (219)
378 2jaq_A Deoxyguanosine kinase; 80.9 0.84 2.9E-05 45.1 3.2 24 684-707 2-25 (205)
379 1xjc_A MOBB protein homolog; s 80.9 1.4 4.7E-05 43.7 4.6 26 684-709 6-31 (169)
380 3h4m_A Proteasome-activating n 80.9 0.86 3E-05 47.9 3.4 26 681-706 50-75 (285)
381 1oxx_K GLCV, glucose, ABC tran 80.9 0.44 1.5E-05 52.8 1.2 31 251-282 25-55 (353)
382 2v54_A DTMP kinase, thymidylat 80.7 0.83 2.8E-05 45.3 3.1 26 681-706 3-28 (204)
383 4b4t_K 26S protease regulatory 80.7 1.6 5.6E-05 49.6 5.8 27 260-287 209-235 (428)
384 1nks_A Adenylate kinase; therm 80.7 1.3 4.4E-05 43.3 4.4 24 684-707 3-26 (194)
385 1qhx_A CPT, protein (chloramph 80.7 0.9 3.1E-05 44.1 3.2 25 682-706 3-27 (178)
386 1ye8_A Protein THEP1, hypothet 80.7 0.82 2.8E-05 45.4 3.0 23 259-282 2-24 (178)
387 1tev_A UMP-CMP kinase; ploop, 80.7 0.84 2.9E-05 44.7 3.0 25 682-706 3-27 (196)
388 1hqc_A RUVB; extended AAA-ATPa 80.6 3.2 0.00011 44.3 7.9 66 682-753 38-103 (324)
389 3cf0_A Transitional endoplasmi 80.6 0.84 2.9E-05 49.0 3.3 27 680-706 47-73 (301)
390 4a82_A Cystic fibrosis transme 80.6 0.43 1.5E-05 56.4 1.0 32 675-706 360-391 (578)
391 2f9l_A RAB11B, member RAS onco 80.5 0.79 2.7E-05 45.5 2.8 22 684-705 7-28 (199)
392 2rhm_A Putative kinase; P-loop 80.4 0.87 3E-05 44.7 3.0 26 681-706 4-29 (193)
393 1aky_A Adenylate kinase; ATP:A 80.4 0.94 3.2E-05 45.9 3.4 26 681-706 3-28 (220)
394 2iyv_A Shikimate kinase, SK; t 80.4 0.88 3E-05 44.5 3.1 24 683-706 3-26 (184)
395 1iy2_A ATP-dependent metallopr 80.3 1.2 4.2E-05 46.9 4.4 30 254-286 72-101 (278)
396 1zd8_A GTP:AMP phosphotransfer 80.3 0.83 2.8E-05 46.6 2.9 27 680-706 5-31 (227)
397 4eaq_A DTMP kinase, thymidylat 80.3 1.4 4.7E-05 45.5 4.6 31 678-708 22-52 (229)
398 4b4t_M 26S protease regulatory 80.2 1.6 5.3E-05 49.8 5.4 27 260-287 218-244 (434)
399 2qag_B Septin-6, protein NEDD5 80.1 0.77 2.6E-05 52.2 2.8 28 677-704 35-64 (427)
400 1odf_A YGR205W, hypothetical 3 80.1 0.92 3.1E-05 48.8 3.3 29 679-707 28-56 (290)
401 3sfz_A APAF-1, apoptotic pepti 80.1 2 7E-05 54.4 7.1 91 258-361 148-248 (1249)
402 1oix_A RAS-related protein RAB 80.0 0.77 2.6E-05 45.4 2.5 22 684-705 31-52 (191)
403 4tmk_A Protein (thymidylate ki 80.0 5.9 0.0002 40.4 9.3 53 681-735 2-55 (213)
404 3a00_A Guanylate kinase, GMP k 80.0 0.88 3E-05 45.0 2.9 24 257-281 1-24 (186)
405 2b8t_A Thymidine kinase; deoxy 80.0 1.5 5E-05 45.4 4.7 43 680-722 10-53 (223)
406 1t9h_A YLOQ, probable GTPase E 80.0 0.36 1.2E-05 52.5 0.1 33 248-281 164-196 (307)
407 4b4t_L 26S protease subunit RP 80.0 2 6.8E-05 48.9 6.2 27 260-287 218-244 (437)
408 2r62_A Cell division protease 80.0 0.88 3E-05 47.5 3.1 22 685-706 47-68 (268)
409 2vli_A Antibiotic resistance p 79.9 0.81 2.8E-05 44.6 2.6 26 681-706 4-29 (183)
410 3syl_A Protein CBBX; photosynt 79.9 0.99 3.4E-05 48.0 3.5 27 682-708 67-93 (309)
411 2bwj_A Adenylate kinase 5; pho 79.9 0.87 3E-05 44.9 2.9 27 680-706 10-36 (199)
412 1in4_A RUVB, holliday junction 79.8 0.86 2.9E-05 49.7 3.0 24 683-706 52-75 (334)
413 2vp4_A Deoxynucleoside kinase; 79.6 0.56 1.9E-05 48.3 1.4 28 678-705 16-43 (230)
414 2cdn_A Adenylate kinase; phosp 79.5 1.1 3.6E-05 44.8 3.4 26 681-706 19-44 (201)
415 3qf4_A ABC transporter, ATP-bi 79.5 0.52 1.8E-05 55.8 1.2 31 676-706 363-393 (587)
416 2gno_A DNA polymerase III, gam 79.5 2.8 9.7E-05 45.2 7.0 69 682-750 18-92 (305)
417 3cf2_A TER ATPase, transitiona 79.4 1.9 6.5E-05 52.9 6.1 68 684-752 513-626 (806)
418 1via_A Shikimate kinase; struc 79.4 0.93 3.2E-05 44.1 2.9 23 684-706 6-28 (175)
419 3be4_A Adenylate kinase; malar 79.4 1 3.4E-05 45.8 3.2 26 681-706 4-29 (217)
420 1jjv_A Dephospho-COA kinase; P 79.4 0.84 2.9E-05 45.7 2.6 21 684-704 4-24 (206)
421 1ni3_A YCHF GTPase, YCHF GTP-b 79.4 0.94 3.2E-05 50.9 3.2 29 676-704 14-42 (392)
422 3szr_A Interferon-induced GTP- 79.4 1.7 5.7E-05 51.7 5.6 104 245-356 28-222 (608)
423 3aez_A Pantothenate kinase; tr 79.3 0.97 3.3E-05 49.1 3.2 28 253-281 86-113 (312)
424 3pfi_A Holliday junction ATP-d 79.2 1.3 4.5E-05 47.8 4.3 28 258-286 56-83 (338)
425 3u61_B DNA polymerase accessor 79.2 2.4 8.2E-05 45.5 6.3 66 684-753 49-118 (324)
426 3t61_A Gluconokinase; PSI-biol 79.1 1.1 3.6E-05 44.8 3.3 24 683-706 19-42 (202)
427 2wji_A Ferrous iron transport 79.1 0.9 3.1E-05 43.6 2.6 21 684-704 5-25 (165)
428 1lv7_A FTSH; alpha/beta domain 79.1 0.92 3.2E-05 47.1 2.9 22 685-706 48-69 (257)
429 2yhs_A FTSY, cell division pro 79.0 4.7 0.00016 46.6 8.9 29 252-281 288-316 (503)
430 2qt1_A Nicotinamide riboside k 79.0 1 3.4E-05 45.2 3.0 29 252-281 16-44 (207)
431 3dm5_A SRP54, signal recogniti 79.0 5.4 0.00019 45.4 9.4 41 256-296 99-139 (443)
432 1c9k_A COBU, adenosylcobinamid 78.9 0.43 1.5E-05 47.8 0.3 33 685-722 2-34 (180)
433 4f4c_A Multidrug resistance pr 78.9 0.66 2.2E-05 60.2 2.0 33 674-706 1097-1129(1321)
434 1d2n_A N-ethylmaleimide-sensit 78.8 2 6.9E-05 44.9 5.5 29 257-286 64-92 (272)
435 3pqc_A Probable GTP-binding pr 78.7 7.3 0.00025 37.5 9.2 22 259-281 25-46 (195)
436 2qz4_A Paraplegin; AAA+, SPG7, 78.7 0.98 3.3E-05 46.7 2.9 24 683-706 40-63 (262)
437 1njg_A DNA polymerase III subu 78.6 1 3.4E-05 45.1 2.9 25 684-708 47-71 (250)
438 3b9p_A CG5977-PA, isoform A; A 78.6 1 3.5E-05 47.7 3.1 25 682-706 54-78 (297)
439 1ly1_A Polynucleotide kinase; 78.5 0.94 3.2E-05 43.8 2.6 21 684-704 4-24 (181)
440 4fcw_A Chaperone protein CLPB; 78.3 1.2 4.3E-05 47.2 3.7 38 683-721 48-85 (311)
441 2zej_A Dardarin, leucine-rich 78.2 0.82 2.8E-05 44.7 2.1 21 684-704 4-24 (184)
442 3upu_A ATP-dependent DNA helic 78.2 0.94 3.2E-05 51.8 2.8 26 684-709 47-72 (459)
443 3vaa_A Shikimate kinase, SK; s 78.2 1.1 3.9E-05 44.6 3.1 28 253-281 21-48 (199)
444 1q3t_A Cytidylate kinase; nucl 78.2 1.2 4.2E-05 45.7 3.5 27 680-706 14-40 (236)
445 3r20_A Cytidylate kinase; stru 78.1 1.1 3.8E-05 46.7 3.1 24 683-706 10-33 (233)
446 3sop_A Neuronal-specific septi 78.0 0.95 3.2E-05 48.1 2.6 23 684-706 4-26 (270)
447 3lw7_A Adenylate kinase relate 77.9 0.9 3.1E-05 43.3 2.2 19 684-702 3-21 (179)
448 1ukz_A Uridylate kinase; trans 77.9 1.2 4.2E-05 44.2 3.3 26 681-706 14-39 (203)
449 1jr3_A DNA polymerase III subu 77.8 4.9 0.00017 43.6 8.4 24 684-707 40-63 (373)
450 2yv5_A YJEQ protein; hydrolase 77.8 0.75 2.6E-05 49.7 1.7 33 248-282 156-188 (302)
451 1kag_A SKI, shikimate kinase I 77.8 1.2 3.9E-05 43.1 2.9 24 257-281 4-27 (173)
452 3j16_B RLI1P; ribosome recycli 77.8 1.5 5.1E-05 52.2 4.4 35 247-282 93-127 (608)
453 2orw_A Thymidine kinase; TMTK, 77.7 1.5 5.1E-05 43.7 3.8 27 256-282 2-28 (184)
454 3ozx_A RNAse L inhibitor; ATP 77.5 0.9 3.1E-05 53.3 2.4 29 676-704 19-47 (538)
455 2npi_A Protein CLP1; CLP1-PCF1 77.4 0.97 3.3E-05 51.9 2.6 29 252-281 133-161 (460)
456 1svi_A GTP-binding protein YSX 77.4 12 0.0004 36.2 10.3 89 259-355 25-141 (195)
457 2qp9_X Vacuolar protein sortin 77.4 3.5 0.00012 45.3 7.1 27 259-286 86-112 (355)
458 4b4t_I 26S protease regulatory 77.2 2.6 8.8E-05 47.9 5.9 30 255-287 216-245 (437)
459 1m7g_A Adenylylsulfate kinase; 77.2 1.3 4.5E-05 44.6 3.3 29 679-707 22-50 (211)
460 1lw7_A Transcriptional regulat 77.2 1 3.5E-05 49.8 2.7 30 254-284 165-196 (365)
461 4b3f_X DNA-binding protein smu 77.2 1.6 5.5E-05 52.2 4.5 49 684-735 207-255 (646)
462 1xwi_A SKD1 protein; VPS4B, AA 77.2 3.8 0.00013 44.4 7.2 24 258-282 46-69 (322)
463 2oap_1 GSPE-2, type II secreti 77.1 0.77 2.6E-05 53.5 1.7 30 677-706 255-284 (511)
464 2onk_A Molybdate/tungstate ABC 77.1 1.2 4.1E-05 46.5 3.0 30 251-282 19-48 (240)
465 1jr3_A DNA polymerase III subu 77.0 4.1 0.00014 44.3 7.4 22 259-281 40-61 (373)
466 2f1r_A Molybdopterin-guanine d 77.0 0.75 2.6E-05 45.5 1.3 26 683-708 3-28 (171)
467 2gj8_A MNME, tRNA modification 76.9 1.2 4E-05 43.2 2.7 25 256-281 3-27 (172)
468 1y63_A LMAJ004144AAA protein; 76.9 1.4 4.9E-05 43.3 3.4 28 253-281 6-33 (184)
469 1qvr_A CLPB protein; coiled co 76.8 3.1 0.00011 51.4 7.1 28 681-708 190-217 (854)
470 2gza_A Type IV secretion syste 76.7 1.2 4E-05 49.4 3.0 31 252-283 170-200 (361)
471 1zak_A Adenylate kinase; ATP:A 76.6 1.3 4.4E-05 45.0 3.0 26 681-706 4-29 (222)
472 1ak2_A Adenylate kinase isoenz 76.6 1.4 5E-05 45.1 3.5 26 681-706 15-40 (233)
473 1ofh_A ATP-dependent HSL prote 76.6 1.3 4.5E-05 46.8 3.2 26 681-706 49-74 (310)
474 3eie_A Vacuolar protein sortin 76.6 3.5 0.00012 44.5 6.7 28 258-286 52-79 (322)
475 1np6_A Molybdopterin-guanine d 76.6 2.1 7.1E-05 42.4 4.5 26 683-708 7-32 (174)
476 2pt5_A Shikimate kinase, SK; a 76.6 1.4 4.7E-05 42.3 3.1 23 684-706 2-24 (168)
477 3e70_C DPA, signal recognition 76.5 8.9 0.00031 41.8 9.9 27 254-281 126-152 (328)
478 3dz8_A RAS-related protein RAB 76.5 6.9 0.00023 38.0 8.3 85 259-344 25-158 (191)
479 3m6a_A ATP-dependent protease 76.4 1.3 4.5E-05 51.8 3.5 26 681-706 107-132 (543)
480 1r8s_A ADP-ribosylation factor 76.4 1.4 4.6E-05 41.6 3.0 22 684-705 2-23 (164)
481 3tlx_A Adenylate kinase 2; str 76.3 1.3 4.6E-05 45.9 3.1 26 681-706 28-53 (243)
482 2iw3_A Elongation factor 3A; a 76.2 0.78 2.7E-05 57.4 1.4 32 674-705 691-722 (986)
483 1knq_A Gluconate kinase; ALFA/ 76.2 1.4 4.7E-05 42.7 3.0 25 256-281 7-31 (175)
484 2dyk_A GTP-binding protein; GT 76.1 1.3 4.5E-05 41.5 2.8 21 684-704 3-23 (161)
485 2wjg_A FEOB, ferrous iron tran 76.0 1.2 4.2E-05 43.1 2.6 22 683-704 8-29 (188)
486 1sq5_A Pantothenate kinase; P- 75.9 1.3 4.4E-05 47.9 2.9 28 253-281 76-103 (308)
487 2qm8_A GTPase/ATPase; G protei 75.8 1.3 4.5E-05 48.6 3.0 29 252-281 50-78 (337)
488 2nzj_A GTP-binding protein REM 75.8 1.3 4.3E-05 42.3 2.6 21 684-704 6-26 (175)
489 1z2a_A RAS-related protein RAB 75.8 1.3 4.6E-05 41.7 2.8 22 684-705 7-28 (168)
490 1u0l_A Probable GTPase ENGC; p 75.8 0.92 3.1E-05 48.9 1.7 34 248-282 160-193 (301)
491 3tqc_A Pantothenate kinase; bi 75.7 1.9 6.5E-05 47.1 4.3 24 684-707 94-117 (321)
492 1e6c_A Shikimate kinase; phosp 75.7 1.4 4.8E-05 42.4 2.9 24 683-706 3-26 (173)
493 3ux8_A Excinuclease ABC, A sub 75.7 0.77 2.6E-05 55.2 1.2 28 676-703 342-369 (670)
494 1kao_A RAP2A; GTP-binding prot 75.6 1.4 4.7E-05 41.4 2.8 22 684-705 5-26 (167)
495 1sxj_B Activator 1 37 kDa subu 75.5 3.8 0.00013 43.3 6.6 25 683-707 43-67 (323)
496 1e4v_A Adenylate kinase; trans 75.4 1.4 4.7E-05 44.5 2.9 23 684-706 2-24 (214)
497 4b4t_H 26S protease regulatory 75.0 3.3 0.00011 47.4 6.2 27 260-287 246-272 (467)
498 1tq4_A IIGP1, interferon-induc 75.0 0.97 3.3E-05 51.2 1.7 21 684-704 71-91 (413)
499 3cr8_A Sulfate adenylyltranfer 75.0 0.82 2.8E-05 53.7 1.2 31 678-708 365-395 (552)
500 2bdt_A BH3686; alpha-beta prot 75.0 1.4 4.8E-05 43.3 2.7 23 257-280 2-24 (189)
No 1
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=3.3e-106 Score=919.07 Aligned_cols=448 Identities=52% Similarity=0.811 Sum_probs=422.5
Q ss_pred EEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeE
Q psy210 123 NIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRI 202 (915)
Q Consensus 123 ~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrv 202 (915)
.++-.-++...+++.+++. +| ..|+|.++++ +.+.+++|+++.+++.|++|++||+++++|+|+++||||
T Consensus 38 i~~v~Gl~~~~~gElv~~~--~~--~~g~v~~l~~------d~v~~~~~~~~~gi~~G~~V~~tg~~~~VpvG~~lLGRV 107 (513)
T 3oaa_A 38 VIRIHGLADCMQGEMISLP--GN--RYAIALNLER------DSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRV 107 (513)
T ss_dssp EEEEEECTTCBTTCEEEET--TT--EEEEEEEECS------SCEEEEESSCCSSCCTTCEEECCSCSSEEECSGGGTTCE
T ss_pred EEEEECCccCCcCCEEEEC--CC--CEEEEEEeeC------CEEEEEEeCCccCCCCCCEEEEcCCCCeEeeCHHHhccc
Confidence 3344445456889999885 45 5799999998 345789999999999999999999999999999999999
Q ss_pred eCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 203 VNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 203 iD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+|++|+|||+++++....++|++.+||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|++++|+||+
T Consensus 108 ~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~ 187 (513)
T 3oaa_A 108 VNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR 187 (513)
T ss_dssp EETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS
T ss_pred hhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhc
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 283 NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 283 ~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
++|++|||++||||++|+++|+++|+++|+|+||++|++++|+||.+|+++||+|||+||||||+|+|||++||||||||
T Consensus 188 ~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 267 (513)
T 3oaa_A 188 DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQA 267 (513)
T ss_dssp SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHH
T ss_pred cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhh-c----cCCCCccceeEEEEecCCCCCCccccc
Q psy210 363 WAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKI-F----NKNNGTLTAFPIIETLEGDVTSFIPTN 437 (915)
Q Consensus 363 ~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~-~----~~~~GSiT~~~~v~~~~~d~~~pi~~~ 437 (915)
+|+||||+++||||+++|||||+||+||||+||||++++.. +++ + ..++||||++|+|++|+||++|||||+
T Consensus 268 ~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~---~~~~~~~~~~g~~GSITal~~V~~~~dD~s~pIp~~ 344 (513)
T 3oaa_A 268 VAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEY---VEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTN 344 (513)
T ss_dssp HHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHH---HHHHHTTSCCSCCEEEEECCEEECGGGCCSSHHHHH
T ss_pred HHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhccccc---chhccccccCCCCcceEEEEEEEcCCCCccCcchHh
Confidence 99999999999999999999999999999999999985320 111 1 123899999999999999999999999
Q ss_pred cccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHhH
Q psy210 438 VISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNG 517 (915)
Q Consensus 438 ~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~~ 517 (915)
++|||||||||||+||++||||||||+.|+||+|+.+++++|+++++++|..|++|+|+++|+++|+++|++++++|+++
T Consensus 345 ~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~~~~~~~~~~va~~lr~~la~y~el~~~~~~g~~ld~~~~~~l~~~ 424 (513)
T 3oaa_A 345 VISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLDHG 424 (513)
T ss_dssp HHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred hhccCCeEEEEehhHHhCCCCCccCccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhhh
Q psy210 518 EKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKVQ 583 (915)
Q Consensus 518 ~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~ 583 (915)
++|++||+|+.++++++++++..||++.+|+||++|++++..|+..+++|++..+++..+.|.+..
T Consensus 425 ~~i~~fL~Q~~~~~~~~~e~~~~l~a~~~g~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 490 (513)
T 3oaa_A 425 QKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTG 490 (513)
T ss_dssp HHHHHHTCCCSSCCCCTTHHHHHHHHHHSCTTTTTCCHHHHHHHHHHHHHHTGGGCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998888776653
No 2
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=6.8e-104 Score=903.58 Aligned_cols=481 Identities=45% Similarity=0.755 Sum_probs=430.1
Q ss_pred CcceeEEeecCCCC-ceEEecccccCCCHHHHHHHHHHhcCccceeeecce-eEEEEeecChhhcccccccccCCCceEe
Q psy210 72 KNHQIFLEPEGYYS-RELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFA-YNIEYDYFDPRCLNQTLNIKFANNTVLS 149 (915)
Q Consensus 72 ~~~~~~l~~e~~~~-~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~r~g-~~~~~~~~~p~~L~~~le~~~~~g~~~a 149 (915)
.+|++-+.|+.... -.=.+.+|++..... +.-++.+.+ -.++-.-+++..+++.+++. .+|+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~G~V~~V~g~iv~v~gl~~~~~gEl~~i~-~~g~--~ 73 (515)
T 2r9v_A 9 HHHHLRINPGEITKVLEEKIKSFEEKIDLE------------DTGKVIQVGDGIARAYGLNKVMVSELVEFV-ETGV--K 73 (515)
T ss_dssp --------------------CTTCCCSCTT------------TEEEEEEEETTEEEEEECTTCCTTEEEEET-TTCC--E
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCCcce------------eeeEEEEEECcEEEEecCCCCCCCCEEEEe-cCCe--E
Confidence 45666777775443 222244455444322 233444433 34444556677889999985 3454 4
Q ss_pred eEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceeecCCCcccccccccccccCC
Q psy210 150 GQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAP 229 (915)
Q Consensus 150 GQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~ 229 (915)
|+|.++++ + .+.+++|+.+.+++.|++|++||+++.+|+|+.+||||+|++|+|||+++++....++|++.+||
T Consensus 74 g~v~~l~~--~----~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P 147 (515)
T 2r9v_A 74 GVAFNLEE--D----NVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAP 147 (515)
T ss_dssp EEEEECCT--T----CEEEEEESCCTTCCTTCEEEEEEEECEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCC
T ss_pred EEEEEecC--C----eEEEEEecCcccccCCCEEEEeCCcceeecCccceeeEEcCCCCCcCCCCCCCccceeecccCCC
Confidence 99999998 3 34788999999999999999999999999999999999999999999999998888999999999
Q ss_pred CCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhc
Q psy210 230 GIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKY 309 (915)
Q Consensus 230 ~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~ 309 (915)
+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|++++|+||+++|++|||++||||++||++|++++++
T Consensus 148 ~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 148 GVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp CGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CcccccCCCcchhcCccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhh
Q psy210 310 YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLH 389 (915)
Q Consensus 310 ~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~ 389 (915)
.++|+||++|++|+|+||.+|+++||+|||+||||||+|+|||++||||||||+||||||+++||||+++||||++||+|
T Consensus 228 ~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~ 307 (515)
T 2r9v_A 228 YGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLH 307 (515)
T ss_dssp TTGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHH
T ss_pred CCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccc
Q psy210 390 SRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR 469 (915)
Q Consensus 390 ~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR 469 (915)
+||+||||++++..| +||||++|+|++|+||++|||||+++|||||||||||+||++||||||||+.|+||
T Consensus 308 ~rLlERAg~~~~~~~---------~GSITal~~v~~~~~D~s~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSR 378 (515)
T 2r9v_A 308 SRLLERAVRLNDKLG---------GGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSR 378 (515)
T ss_dssp HHHHTTCEEBCTTTT---------SCEEEEEEEEEESTTCTTSHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEG
T ss_pred HHHHHHHhhccccCC---------CcceEEeeeeeccCCCccccchhhhccccceEEEEchHHHhCCCCCeecccccccc
Confidence 999999999865333 79999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHHhcccc
Q psy210 470 VGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFF 549 (915)
Q Consensus 470 ~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~L 549 (915)
+|+.++.++|+++++++|+.|++|+|+++|+++|+++|++++++|+++++|++||+|+.++++++++++..+|++.+|+|
T Consensus 379 v~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~l 458 (515)
T 2r9v_A 379 VGGSAQIKAMKQVAGMLRIDLAQYRELETFAQFATELDPATRAQIIRGQRLMELLKQEQYSPMPVEEQVVVLFAGVRGYL 458 (515)
T ss_dssp GGTTTSCHHHHHHHHHHHHHHHHHHHHHTTGGGCSCCCHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHHHHHTTTT
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHhhhcccccchhhhh
Q psy210 550 FKIPIKQIELFEINIIKYFRIINLKNNISINKV 582 (915)
Q Consensus 550 d~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev 582 (915)
+.+|.+++..|+..+++|++..+++..+.|.+.
T Consensus 459 d~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 491 (515)
T 2r9v_A 459 DDLPVEEVRRFEKEFLRFMHEKHQDILDDIKTK 491 (515)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 999999999999999999999999888777654
No 3
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=2.7e-103 Score=899.17 Aligned_cols=447 Identities=48% Similarity=0.794 Sum_probs=423.5
Q ss_pred EEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeE
Q psy210 123 NIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRI 202 (915)
Q Consensus 123 ~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrv 202 (915)
.++-.-+++..+++.+++.. |+ .|++.++++ +.+.+++|+.+.+++.|++|++||+++.+|+|+++||||
T Consensus 38 iv~v~gl~~~~~ge~~~i~~--g~--~g~v~~l~~------~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRV 107 (502)
T 2qe7_A 38 IARVHGLEKVMAGELLEFEN--GV--MGMAQNLEE------DNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRV 107 (502)
T ss_dssp EEEEECCTTCBTTEEEEETT--SC--EEEEEEEET------TEEEEEECSCCSSCCTTCEEEEEEEESEEECSGGGTTCE
T ss_pred EEEEEECCCCCCCCEEEECC--CC--EEEEEEecC------CeEEEEEecCccCCcCCCEEEEeCCcceEEcccccceEE
Confidence 34444455677889998853 53 499999997 345888999999999999999999999999999999999
Q ss_pred eCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 203 VNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 203 iD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+|++|+|||+++++....++|++.+||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|++++|+||+
T Consensus 108 vd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 108 VNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp ECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred EccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 283 NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 283 ~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
++|++|||++||||++|+++|++++++.++|+||++|++++|+||.+|+++||+|||+||||||+|+|||++||||||||
T Consensus 188 ~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A 267 (502)
T 2qe7_A 188 GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQA 267 (502)
T ss_dssp SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcccccccccc
Q psy210 363 WAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISIT 442 (915)
Q Consensus 363 ~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~ 442 (915)
+||||||+++||||+++||||++||+|+||+||||++++..| +||||++|+|++|+||++||||++++|||
T Consensus 268 ~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~~~---------~GSITal~~v~~~~dD~s~pI~~~~~si~ 338 (502)
T 2qe7_A 268 AAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKG---------GGSLTALPFIETQAGDVSAYIPTNVISIT 338 (502)
T ss_dssp HHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTTTT---------CCEEEEEEEEECSTTCCSSHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccccCC---------CcceeEEEEEEccCCCcccchhHHHhhhc
Confidence 999999999999999999999999999999999999864323 79999999999999999999999999999
Q ss_pred CcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHHHHhHHHHHH
Q psy210 443 DGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISL 522 (915)
Q Consensus 443 dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~L~~~~~i~~ 522 (915)
||||||||+||++||||||||+.|+||+|+.++.++|+++++++|+.|++|+|+++|+++|+++|++++++|+++++|++
T Consensus 339 DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~ 418 (502)
T 2qe7_A 339 DGQIFLESDLFYSGVRPAVNVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVE 418 (502)
T ss_dssp SEEEEECHHHHTTTCSSCBCTTTCEESSGGGGSCHHHHHHHHHHHHHHHHHHHGGGSTTCCCCTTTTTTTTHHHHHHHHH
T ss_pred CcEEEEehhHhhCCCCceeCcccccccCCCccCCHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhhhhccccc
Q psy210 523 LMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKVQQQIGEN 589 (915)
Q Consensus 523 fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~~~l~~~ 589 (915)
||+|+.++++++++++..||++.+|+|+.+|.+++..|++.+++|++..+++..+.|.+.. .++++
T Consensus 419 fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~ 484 (502)
T 2qe7_A 419 ILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKDSLLDHIRQTG-ELPDT 484 (502)
T ss_dssp HHCCCTTCCCCHHHHHHHHHHHHTTTTTSSCSTTHHHHHHHHHHHHHHTTHHHHHHHHSSC-CCCCT
T ss_pred HhCCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCHH
Confidence 9999999999999999999999999999999999999999999999999998887776653 34443
No 4
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=6.8e-103 Score=897.33 Aligned_cols=442 Identities=48% Similarity=0.737 Sum_probs=420.8
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
-.++..-+++..+++.+++.. |+ .|+|.++++ +.+.+++|+.+.+++.|++|++||+++.+|+|+++|||
T Consensus 37 ~iv~v~gl~~~~~ge~~~i~~--g~--~g~v~~l~~------~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGR 106 (510)
T 2ck3_A 37 GIARVHGLRNVQAEEMVEFSS--GL--KGMSLNLEP------DNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGR 106 (510)
T ss_dssp TEEEEEECTTCBTTCEEEETT--SC--EEEEEEECS------SCEEEEESSCGGGCCTTCEEEECCCCCEEEESGGGTTC
T ss_pred cEEEEeeCCCCCCCCEEEECC--CC--eEEEEeccC------CeEEEEEECCcccccCCCEEEEeCCcceeecCccceee
Confidence 344444565678899999853 53 499999997 34578899999999999999999999999999999999
Q ss_pred EeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 202 IVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 202 viD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
|+|++|+|||+++++....++|++.+||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+||+++|+||
T Consensus 107 Vvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q 186 (510)
T 2ck3_A 107 VVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ 186 (510)
T ss_dssp EECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHT
T ss_pred EEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEecCCCCCchHHHHHHHHHH
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC--------CCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEE
Q psy210 282 KN--------KNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353 (915)
Q Consensus 282 ~~--------~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv 353 (915)
+. +|++|||++||||++|+++|++++++.++|+||++|++++|+||.+|+++||+|||+||||||+|+|||+
T Consensus 187 ~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl 266 (510)
T 2ck3_A 187 KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALI 266 (510)
T ss_dssp HHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 65 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCc
Q psy210 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSF 433 (915)
Q Consensus 354 ~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~p 433 (915)
+||||||||+||||||+++||||+++||||++||+|+||+||||++++..| +||||++|+|++|+||++||
T Consensus 267 i~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~~~---------~GSITal~~v~~~~dD~s~p 337 (510)
T 2ck3_A 267 IYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG---------GGSLTALPVIETQAGDVSAY 337 (510)
T ss_dssp EEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGGGT---------SCEEEEEEEEECSTTCTTSH
T ss_pred EEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhcccccCC---------CcceeEeeeeccCCCCcccc
Confidence 999999999999999999999999999999999999999999999865333 79999999999999999999
Q ss_pred cccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHH
Q psy210 434 IPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQ 513 (915)
Q Consensus 434 i~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~ 513 (915)
||++++|||||||||||+||++||||||||+.|+||+|+.++.++|+++++++|+.|++|+|+++|+++|+++|++++++
T Consensus 338 I~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~G~~l~~~~~~~ 417 (510)
T 2ck3_A 338 IPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQL 417 (510)
T ss_dssp HHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGGSCHHHHHHHHHHHHHHHHHHHHGGGSSSCSSSCHHHHHH
T ss_pred chHhhhcccceEEEEehhHhhCCCCCcccchhcccccccccCCHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhh
Q psy210 514 LYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKV 582 (915)
Q Consensus 514 L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev 582 (915)
|+++++|++||+|+.++++++++++..||++.+|+|+.++.+++..|+..+++|++..+++..+.|.+.
T Consensus 418 l~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 486 (510)
T 2ck3_A 418 LSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTD 486 (510)
T ss_dssp HHHHHHHHHTTCCCSSCCCCHHHHHHHHHHHHTTSSTTSCGGGHHHHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred HHHhHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999887777654
No 5
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=5.3e-103 Score=897.68 Aligned_cols=450 Identities=45% Similarity=0.723 Sum_probs=425.7
Q ss_pred eeeecce-eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceec
Q psy210 115 SSIIRFA-YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIP 193 (915)
Q Consensus 115 a~~~r~g-~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vp 193 (915)
-++.+.+ ..++-.-+++..+++.+++.. |+ .|+|.++++ +.+.+++|+.+.+++.|++|.+||+++.+|
T Consensus 30 G~V~~v~g~iv~v~gl~~~~~ge~~~i~~--g~--~g~v~~l~~------~~v~~~~~~~~~gi~~G~~V~~tg~~~~vp 99 (507)
T 1fx0_A 30 GTVLQVGDGIARIHGLDEVMAGELVEFEE--GT--IGIALNLES------NNVGVVLMGDGLMIQEGSSVKATGRIAQIP 99 (507)
T ss_dssp EEECCCCSSEEEEEECTTCCTTCCEEETT--CC--EEEEEEECS------SEEEEEECSCGGGCCTTCEEECCCCCCEEE
T ss_pred EEEEEEeCCEEEEEECCCccCCCEEEECC--Cc--eEEEEeccC------CeEEEEEecCccCCcCCCEEEEeCCcceee
Confidence 3444432 445555566778899999853 53 499999997 345889999999999999999999999999
Q ss_pred cccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHH
Q psy210 194 VGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTI 273 (915)
Q Consensus 194 vg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l 273 (915)
+|+++||||+|++|+|||+++++....++|++.+||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 100 vG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~L 179 (507)
T 1fx0_A 100 VSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAV 179 (507)
T ss_dssp ESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHH
T ss_pred cCccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEecCCCCCccHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEE
Q psy210 274 AIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353 (915)
Q Consensus 274 ~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv 353 (915)
++++|+||+++|++|||++||||++|+++|++++++.++|+||++|++++|+||.+|+++||+|||+||||||+|+|||+
T Consensus 180 al~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl 259 (507)
T 1fx0_A 180 ATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLI 259 (507)
T ss_dssp HHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCc
Q psy210 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSF 433 (915)
Q Consensus 354 ~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~p 433 (915)
+||||||||+||||||+++||||+++||||++||+|+||+||||++++..| +||||++|+|++|+||++||
T Consensus 260 i~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~~~---------~GSITal~~v~~~~~D~s~p 330 (507)
T 1fx0_A 260 IYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLG---------EGSMTALPIVETQAGDVSAY 330 (507)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTTTT---------SCEEEECCEEECSTTCTTSH
T ss_pred EEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccccCC---------CcceeeeeeeeccCCCcccc
Confidence 999999999999999999999999999999999999999999999865323 79999999999999999999
Q ss_pred cccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccCCCCHHHHHH
Q psy210 434 IPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQ 513 (915)
Q Consensus 434 i~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~~ld~~~~~~ 513 (915)
||++++|||||||||||+||++||||||||+.|+||+++.++.++|+++++++|+.|++|+|+++|+++|+++|++++++
T Consensus 331 I~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~G~~l~~~~~~~ 410 (507)
T 1fx0_A 331 IPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQ 410 (507)
T ss_dssp HHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGGGGSCHHHHHHHHHHHHHHHHHHHHTTTGGGCSSCCHHHHHH
T ss_pred hHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccccCCCHHHHHHHHHHHHHHHhhhHHHHHHHhccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhhh
Q psy210 514 LYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKVQ 583 (915)
Q Consensus 514 L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~ 583 (915)
|+++++|++||+|+.++++++++++..+|++.+|+|+.++.+++..|+..+++|++.+++++.+.|.+..
T Consensus 411 l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~ 480 (507)
T 1fx0_A 411 LARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTK 480 (507)
T ss_dssp HHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTSSSSSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhhchhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999998887776543
No 6
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=1.2e-96 Score=836.09 Aligned_cols=423 Identities=21% Similarity=0.295 Sum_probs=396.6
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhcccccccc-CCCcccccCccceeccccccce
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLT-QGQKCFCTEKIFEIPVGFELLG 200 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~-~G~~V~~tg~~~~vpvg~~lLG 200 (915)
-.++-.-+....+++.+++...+|..+.|+|.++++ + .+.+++|+.+.+++ .|++|.+||+++++|+|+++||
T Consensus 21 ~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~--~----~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLG 94 (465)
T 3vr4_D 21 PLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQE--D----KAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIG 94 (465)
T ss_dssp TEEEEESCCSCCTTCEEEEECTTSCEEEEEEEEEES--S----EEEEEETTCCTTCCTTTCEEEECSSCCEEEECGGGTT
T ss_pred CEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeC--C----eEEEEEecCccccccCCCEEEECCCcceeecchhhcc
Confidence 344445455578999999987778788999999998 3 34788999999999 8999999999999999999999
Q ss_pred eEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 201 RIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 201 rviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
||+|++|+|||+++++....+++++..||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|++
T Consensus 95 RV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L-~~~Ia~ 173 (465)
T 3vr4_D 95 RVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKEL-AAQIAR 173 (465)
T ss_dssp EEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHH-HHHHHH
T ss_pred ceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChHHH-HHHHHH
Confidence 9999999999999999888889999999999999999999999999999999999999999999999999999 578999
Q ss_pred hc-----CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHh-cCCcEEEE
Q psy210 281 QK-----NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD-LGQDCLII 354 (915)
Q Consensus 281 ~~-----~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~-~g~~Vlv~ 354 (915)
|+ +.+++|||++||||++|+++|+++++++|+|+||++|++++|+||.+|+++||+|+|+|||||| +|+|||++
T Consensus 174 ~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~ 253 (465)
T 3vr4_D 174 QATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVI 253 (465)
T ss_dssp HCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 85 3567899999999999999999999999999999999999999999999999999999999998 69999999
Q ss_pred eccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCcc
Q psy210 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFI 434 (915)
Q Consensus 355 ~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi 434 (915)
|||+||||+|+||||+++||||+++||||++|+.||+||||||++++ ++||||++|+|++|+||++|||
T Consensus 254 ~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~~-----------~~GSIT~i~tv~~~~dD~~~pI 322 (465)
T 3vr4_D 254 MTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRG-----------LKGSVTQIPILTMPEDDKTHPI 322 (465)
T ss_dssp EECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEETT-----------CSCEEEEEEEEECGGGCTTSHH
T ss_pred EcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccCC-----------CCCcEEEEEEEEecCCCcccch
Confidence 99999999999999999999999999999999999999999999853 2799999999999999999999
Q ss_pred ccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccc-----cHHHHHHHHHHHHHHHhhHHHHhhhhcc--CCCC
Q psy210 435 PTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ-----YKIVKKLSGDIRIMLAQYRELESFSKFS--SDLD 507 (915)
Q Consensus 435 ~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~-----~~~~~~~a~~lr~~la~~~e~e~l~~lG--~~ld 507 (915)
||++++|+||||+|||+||++||||||||+.|+||+|.... .++|++++.++++.|++|+|+++++++. +.++
T Consensus 323 ~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~~G~d~L~ 402 (465)
T 3vr4_D 323 PDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLGESALS 402 (465)
T ss_dssp HHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred hHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 99999999999999999999999999999999999986654 4899999999999999999999999984 6899
Q ss_pred HHHHHHHHhHHHH-HHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Q psy210 508 IVTKTQLYNGEKI-SLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIK 566 (915)
Q Consensus 508 ~~~~~~L~~~~~i-~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~ 566 (915)
++++..+.++++| ++||+|+.+++++++++++.+| .+|+.+|.+++.+|++++++
T Consensus 403 ~~d~~~~~~~~~~~~~fL~Q~~~e~~~~~~~~~~l~----~~l~~~p~~~~~~~~~~~~~ 458 (465)
T 3vr4_D 403 DIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGW----ELLAMLPRTELKRIKDDLLD 458 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHH----HHHTTSCTTTCTTSCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCCHHHHHHHHH----HHHhhCCHHHHHHHHHHHHH
Confidence 9999999999998 6999999999999999999999 57899999999999999875
No 7
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=2.6e-96 Score=833.22 Aligned_cols=422 Identities=21% Similarity=0.277 Sum_probs=395.6
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhcccccccc-CCCcccccCccceeccccccce
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLT-QGQKCFCTEKIFEIPVGFELLG 200 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~-~G~~V~~tg~~~~vpvg~~lLG 200 (915)
-.++-.-+....+++.+++...+|..+.|+|.++++ + .+.+++|+.+.+++ .|++|.+||+++++|+|+++||
T Consensus 17 ~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~--~----~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLG 90 (464)
T 3gqb_B 17 PLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSE--E----YAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLG 90 (464)
T ss_dssp TEEEEESCTTSCTTCEEEEECTTSCEEEEEEEEEES--S----EEEEEESSCCTTCCSSSCEEEEEESSCEEEECSTTTT
T ss_pred CEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeC--C----eEEEEEecCccccccCCCEEEECCCCcEEEeChHhcC
Confidence 445555565678999999987778888999999998 3 34789999999999 8999999999999999999999
Q ss_pred eEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 201 RIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 201 rviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
||+|++|+|||+++++....+++++..||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|++
T Consensus 91 RV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L-~~~Ia~ 169 (464)
T 3gqb_B 91 RRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEI-AAQIAR 169 (464)
T ss_dssp EEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHHH-HHHHHH
T ss_pred CEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCchHH-HHHHHH
Confidence 9999999999999999888889999999999999999999999999999999999999999999999999999 578999
Q ss_pred hcC------------CCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHh-c
Q psy210 281 QKN------------KNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD-L 347 (915)
Q Consensus 281 ~~~------------~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~-~ 347 (915)
|+. .+++|||++||||++|+++|+++++++|+|+||++|++++|+||.+|+++||+|||+|||||| +
T Consensus 170 ~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~ 249 (464)
T 3gqb_B 170 QATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEH 249 (464)
T ss_dssp HCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 853 457899999999999999999999999999999999999999999999999999999999998 6
Q ss_pred CCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecC
Q psy210 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLE 427 (915)
Q Consensus 348 g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~ 427 (915)
|+|||++|||+||||+|+||||+++||||+++||||++|+.||+||||||++++ ++||||++|+|++|+
T Consensus 250 G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~~-----------~~GSIT~l~~v~~~~ 318 (464)
T 3gqb_B 250 DYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEG-----------KKGSVTQIPILSMPD 318 (464)
T ss_dssp CCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBTT-----------CSCEEEEEEEEEETT
T ss_pred CCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccCC-----------CCCcEEEEEEEEccC
Confidence 999999999999999999999999999999999999999999999999999853 279999999999999
Q ss_pred CCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccc-----cHHHHHHHHHHHHHHHhhHHHHhhhhc
Q psy210 428 GDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ-----YKIVKKLSGDIRIMLAQYRELESFSKF 502 (915)
Q Consensus 428 ~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~-----~~~~~~~a~~lr~~la~~~e~e~l~~l 502 (915)
||++||||+++++|+||||+|||+||++||||||||+.|+||+|.... .++|++++.++++.|++|+|+++++++
T Consensus 319 dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~ 398 (464)
T 3gqb_B 319 DDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAI 398 (464)
T ss_dssp SCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTSSTTTSCTTHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred CCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999987654 489999999999999999999999998
Q ss_pred c--CCCCHHHHHHHHhHHHH-HHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Q psy210 503 S--SDLDIVTKTQLYNGEKI-SLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIK 566 (915)
Q Consensus 503 G--~~ld~~~~~~L~~~~~i-~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~ 566 (915)
. +.++++++..+.++++| ++||+|+ +|+++++++++.+| .+|..+|.+++.++.+++++
T Consensus 399 ~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e~~~~~~s~~~l~----~ll~~~p~~~~~~~~~~~~~ 460 (464)
T 3gqb_B 399 IGEDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIAW----ALLSMLPQGELKRISKDHIG 460 (464)
T ss_dssp SCSCCCCSHHHHTTHHHHHHHHTTTCCT-TCCCCHHHHHHHHH----HHHTTSCGGGCTTSCHHHHH
T ss_pred cCCCCCCHHHHHHHHhhHHHHHHhcCCC-CCCCCHHHHHHHHH----HHHHhCCHHHHhcCCHHHHH
Confidence 5 68999999999999998 5899999 99999999999999 56889999999999988775
No 8
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=5.9e-96 Score=836.25 Aligned_cols=427 Identities=23% Similarity=0.309 Sum_probs=388.0
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
-.++-.......+++.+++...+|..+.|+|.++++ +.+.+++|+.+.+++.|++|.+||+++++|+|+++|||
T Consensus 23 ~vv~v~g~~~~~~ge~v~i~~~~g~~~~geV~~~~~------~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpvg~~lLGR 96 (469)
T 2c61_A 23 PLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSA------DIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGR 96 (469)
T ss_dssp CEEEEECCSCCCTTCEEEEECTTSCEEEEEEEEECS------SEEEEEEC-------------CEEEBCEEEECGGGTTC
T ss_pred cEEEEeeCCCCCcCCEEEEEeCCCCEEEEEEEEEeC------CEEEEEEeCCCcCCCCCCEEEEcCCCcEEEccccceee
Confidence 455556665668999999975556667899999998 34578899999999999999999999999999999999
Q ss_pred EeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 202 IVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 202 viD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
|+|++|+|||+++++.+..+++++..||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+|+++
T Consensus 97 V~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~L-l~~Ia~~ 175 (469)
T 2c61_A 97 ILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEI-ALQIARQ 175 (469)
T ss_dssp EEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHH-HHHHHHH
T ss_pred EEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHHHH-HHHHHHH
Confidence 999999999999998887789999999999999999999999999999999999999999999999999999 7899987
Q ss_pred cCC-----CeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHH-hcCCcEEEEe
Q psy210 282 KNK-----NVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLIIY 355 (915)
Q Consensus 282 ~~~-----~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r-~~g~~Vlv~~ 355 (915)
... +++|||++||||++|+++|+++++++++|+||++|++|+|+||.+|+++||+|+|+||||| ++|+|||+++
T Consensus 176 ~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~ 255 (469)
T 2c61_A 176 ASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVIL 255 (469)
T ss_dssp CBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 643 5789999999999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred ccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccc
Q psy210 356 DDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIP 435 (915)
Q Consensus 356 Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~ 435 (915)
|||||||+|+||||+++||||+++||||++|+.|++||||||++++ ++||||++|+|++|+||++||||
T Consensus 256 DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~~-----------~~GSIT~i~~v~~~~dD~~dPI~ 324 (469)
T 2c61_A 256 TDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKG-----------AKGSVTQIPILSMPGDDITHPIP 324 (469)
T ss_dssp ECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBTT-----------SSCEEEEEEEEECCSCTTTSCCC
T ss_pred eCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccCC-----------CCCceeeeeeeecCCCCcCcchH
Confidence 9999999999999999999999999999999999999999999853 27999999999999999999999
Q ss_pred cccccccCcEEEeehhhhhcCCCCeeeecCCcccccccc-----ccHHHHHHHHHHHHHHHhhHHHHhhhhcc--CCCCH
Q psy210 436 TNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA-----QYKIVKKLSGDIRIMLAQYRELESFSKFS--SDLDI 508 (915)
Q Consensus 436 ~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~-----~~~~~~~~a~~lr~~la~~~e~e~l~~lG--~~ld~ 508 (915)
|++++|+||||+|||+||++||||||||+.|+||+++.+ +.++|+++++++++.|++|+|++++.++. +++++
T Consensus 325 ~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~~~~~~~~a~~l~~~l~~~~eL~~i~~~~G~~~l~d 404 (469)
T 2c61_A 325 DLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSE 404 (469)
T ss_dssp CCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCH
T ss_pred HHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH
Confidence 999999999999999999999999999999999999998 88999999999999999999999999974 68999
Q ss_pred HHHHHHHhHHHHHH-HhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhh
Q psy210 509 VTKTQLYNGEKISL-LMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRI 570 (915)
Q Consensus 509 ~~~~~L~~~~~i~~-fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~ 570 (915)
+++++++++++|++ ||+|+.+++.++++++..+|+ +|+.+|.+++..+...+++++..
T Consensus 405 ~~~~~l~~~~~i~~~fL~Q~~~~~~~~~et~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~ 463 (469)
T 2c61_A 405 RDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQ----ILTHLPENQLGRIDNKYIQKYHP 463 (469)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHH----HHTTSCGGGCTTSCHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHhh
Confidence 99999999999996 999999999999999999995 68999999999999999987753
No 9
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=5.5e-93 Score=813.36 Aligned_cols=338 Identities=63% Similarity=0.998 Sum_probs=330.5
Q ss_pred chhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCc
Q psy210 577 ISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKF 656 (915)
Q Consensus 577 ~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~ 656 (915)
..+.||+.+|+++.+++++|+++.||++|++|++||+++++|||+++||||+|++|+|+|+++++...++||++..+|++
T Consensus 60 ~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~ 139 (498)
T 1fx0_B 60 NVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAF 139 (498)
T ss_dssp CCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSCEEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCG
T ss_pred ceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcceEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCch
Confidence 35789998899999999999999999999999999999999999999999999999999999888877889999999999
Q ss_pred cccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhc
Q psy210 657 SNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736 (915)
Q Consensus 657 ~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~ 736 (915)
++|.+++++++||||+||+|+|||||||+||||++|+|||+|++++++|++++|++++||++||||+||++||+++++++
T Consensus 140 ~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 140 TQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp GGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred hhhcccccccccceeEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999877889999999999999999999999999
Q ss_pred Cccc-------cEEEEEEcCCCChHhHHHHHHHHHHHHHHHHH-CCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCc
Q psy210 737 NVLD-------KVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQ 808 (915)
Q Consensus 737 ~~~~-------~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~-~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp 808 (915)
++++ ||++|++|+|+||.+|++++++|+|+|||||| +|+|||+++||+||||+|+||||+++||+|+++|||
T Consensus 220 ~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYp 299 (498)
T 1fx0_B 220 GVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQ 299 (498)
T ss_dssp TSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCC
T ss_pred cccccccccccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCC
Confidence 9998 99999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCC
Q psy210 809 PTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYI 888 (915)
Q Consensus 809 ~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~ 888 (915)
|++|++|++||||+|+.++||||+|+||++|+||++|||||++++||||||+|||+||++||||||||+.|+||+|++.+
T Consensus 300 p~l~~~l~~L~ERag~~~~GSIT~i~tV~v~~dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i 379 (498)
T 1fx0_B 300 PTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRI 379 (498)
T ss_dssp TTHHHHHHHTSSSSSCCTTCEECCEEEEECGGGCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTT
T ss_pred chhhhHHHHHHHhccCCCCCceeeeEEEEccCCCcCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCHHHHHHHHHHHHHHHccHhhhhcc
Q psy210 889 VGEEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 889 ~~~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
++++|+++++++|++|++|+|+++|.
T Consensus 380 ~~~~h~~~a~~lr~~la~y~el~~li 405 (498)
T 1fx0_B 380 VGEEHYEIAQRVKETLQRYKELQDII 405 (498)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999974
No 10
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=1.7e-92 Score=806.60 Aligned_cols=338 Identities=65% Similarity=1.031 Sum_probs=329.9
Q ss_pred chhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCc
Q psy210 577 ISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKF 656 (915)
Q Consensus 577 ~~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~ 656 (915)
..+.||+.+++++.+++++|+++.||++|++|++||+++++|||+++||||+|++|+|+|+++++...++||++..+|++
T Consensus 48 ~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~ 127 (482)
T 2ck3_D 48 RLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEF 127 (482)
T ss_dssp CCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEECSGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCG
T ss_pred cEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcceeeccccccCCEEcccCcCcCCcCCCCccccccccccCCch
Confidence 35789988899999999999999999999999999999999999999999999999999999988878889999999999
Q ss_pred cccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhc
Q psy210 657 SNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736 (915)
Q Consensus 657 ~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~ 736 (915)
++|.+++++++||||+||+|+|||||||++|||++|+|||+|++++++|++++|++++||++||||+|||+||++++++.
T Consensus 128 ~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 128 VEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp GGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred HHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999877889999999999999999999999999
Q ss_pred Cccc------cEEEEEEcCCCChHhHHHHHHHHHHHHHHHHH-CCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcc
Q psy210 737 NVLD------KVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP 809 (915)
Q Consensus 737 ~~~~------~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~-~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~ 809 (915)
++++ ||++|++|+|+||.+|++++++|+|+|||||| +|+|||+++||+||||+|+||||+++||+|+++||||
T Consensus 208 ~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp 287 (482)
T 2ck3_D 208 GVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQP 287 (482)
T ss_dssp TSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCT
T ss_pred cccccccCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCch
Confidence 9998 99999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCC
Q psy210 810 TLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIV 889 (915)
Q Consensus 810 ~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~ 889 (915)
++|++|++||||+++.++||||+|+||++|+||++|||||++++||||||+|||+||++||||||||+.|+||+|++.++
T Consensus 288 ~l~~~l~~l~ERag~~~~GSIT~i~tv~v~~dD~tdPi~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i~ 367 (482)
T 2ck3_D 288 TLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIV 367 (482)
T ss_dssp THHHHHHHHHTTSSCCSSCCEEEEEEEECGGGCTTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHHH
T ss_pred hHHHHhHHHHHhhcCCCCCceeeeEEEEecCCCCCCccHHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCcccC
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999977789
Q ss_pred CHHHHHHHHHHHHHHHccHhhhhcc
Q psy210 890 GEEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 890 ~~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
+++|+++++++|++|++|+|+++|.
T Consensus 368 ~~~~~~~a~~lr~~la~y~el~~li 392 (482)
T 2ck3_D 368 GSEHYDVARGVQKILQDYKSLQDII 392 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999974
No 11
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=1.2e-90 Score=793.95 Aligned_cols=423 Identities=20% Similarity=0.264 Sum_probs=375.2
Q ss_pred eeecc-eeEEEEeecC--hhhcccccccccCC--Cc--eEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCc
Q psy210 116 SIIRF-AYNIEYDYFD--PRCLNQTLNIKFAN--NT--VLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEK 188 (915)
Q Consensus 116 ~~~r~-g~~~~~~~~~--p~~L~~~le~~~~~--g~--~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~ 188 (915)
++.+. |-.++-.+.+ -..+++.+++...+ |. .+.++|.+.-+ + ..+.+++|+.+.|++.|++|.+||+
T Consensus 22 ~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~--~---~~v~~~~~~~t~Gl~~G~~V~~tg~ 96 (498)
T 1fx0_B 22 RIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLG--N---NRVRAVAMSATDGLTRGMEVIDTGA 96 (498)
T ss_dssp EEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCS--S---SCEEEEESSCCTTCCTTCEEEECSS
T ss_pred eEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEec--C---CeEEEEEecCccCCCCCCEEEecCC
Confidence 44442 3445555653 12344445665322 32 24566666332 2 2346778999999999999999999
Q ss_pred cceeccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCC
Q psy210 189 IFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQT 268 (915)
Q Consensus 189 ~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~ 268 (915)
++++|+|+++||||+|++|+|||+++++....+||++.+||++++|.++++||+||||+||+|+|||||||++|||++|+
T Consensus 97 ~~~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~Gv 176 (498)
T 1fx0_B 97 PLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGV 176 (498)
T ss_dssp SCEEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSS
T ss_pred cceEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCC
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhhc-CCCeEEEEEeeccchhhHHHHHHHHhccCCcc-------eEEEEEecCCCCHHHhhhhhhhhhhh
Q psy210 269 GKTTIAIDTIINQK-NKNVICIYVCIGQKISSLINVINKLKYYNCMD-------YTVVVAATAADSAAEQYISPYTGCTI 340 (915)
Q Consensus 269 GKt~l~l~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~-------~tvvv~~~a~~~~~~r~~~~~~a~ti 340 (915)
|||+|+.+++.|++ +++.+|||++||||+||+++|++++++.++++ ||++|++++|+||.+|++++++|+|+
T Consensus 177 GKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~alti 256 (498)
T 1fx0_B 177 GKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTM 256 (498)
T ss_dssp SHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHHHHHT
T ss_pred CchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 99999655555554 23335899999999999999999999999997 99999999999999999999999999
Q ss_pred HHHHHh-cCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccce
Q psy210 341 GEYFRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419 (915)
Q Consensus 341 AEy~r~-~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~ 419 (915)
|||||| +|+|||+++|||||||+|+||||+++||||+++||||++|+.|++||||||+. ++||||+
T Consensus 257 AEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~~-------------~~GSIT~ 323 (498)
T 1fx0_B 257 AEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST-------------KEGSITS 323 (498)
T ss_dssp HHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSCC-------------TTCEECC
T ss_pred HHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccCC-------------CCCceee
Confidence 999999 99999999999999999999999999999999999999999999999999863 2799999
Q ss_pred eEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccc-cccHHHHHHHHHHHHHHHhhHHHHh
Q psy210 420 FPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGA-AQYKIVKKLSGDIRIMLAQYRELES 498 (915)
Q Consensus 420 ~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~-~~~~~~~~~a~~lr~~la~~~e~e~ 498 (915)
+|+|++|+||++|||||++++|+||||+|||+||++||||||||+.|+||+|.. ...++|++++.++|+.|++|+|+++
T Consensus 324 i~tV~v~~dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i~~~~h~~~a~~lr~~la~y~el~~ 403 (498)
T 1fx0_B 324 IQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQD 403 (498)
T ss_dssp EEEEECGGGCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEccCCCcCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCcccCCHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999865 5569999999999999999999999
Q ss_pred hhhc-cC-CCCHHHHHHHHhHHHHHHHhhcCCC----------CCccHHHHHHHHHHHhcccccccchhh
Q psy210 499 FSKF-SS-DLDIVTKTQLYNGEKISLLMKQKPH----------ENYSIVELIIILLIIKNRFFFKIPIKQ 556 (915)
Q Consensus 499 l~~l-G~-~ld~~~~~~L~~~~~i~~fL~Q~~~----------e~~s~ee~l~~L~ai~~G~Ld~vp~~e 556 (915)
++++ |. .++++++++++++++|++||+|+.+ +..++++++..+..+..|-+|.+|.+.
T Consensus 404 li~i~G~d~ls~~d~~~l~~~~~i~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~g~~d~~pe~~ 473 (498)
T 1fx0_B 404 IIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQA 473 (498)
T ss_dssp HHHHHCSTTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTTTTSSSCGGG
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhcCcccCCCHHH
Confidence 9875 64 6999999999999999999999966 888999999999998888888887643
No 12
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=9.8e-90 Score=783.83 Aligned_cols=402 Identities=23% Similarity=0.311 Sum_probs=365.8
Q ss_pred cccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCceeecCCCc
Q psy210 136 QTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKK 215 (915)
Q Consensus 136 ~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~~~ 215 (915)
+.+++.. +|....++|.+.-+ + ..+.+++|+.+.|++.|++|.+||+++++|+|+++||||+|++|+|||++++
T Consensus 38 ~~~~i~~-~~~~~~~eV~~~~~--~---~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG~~lLGRV~d~lG~PiDg~~~ 111 (482)
T 2ck3_D 38 NALEVQG-RETRLVLEVAQHLG--E---STVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGP 111 (482)
T ss_dssp CEEEESS-CSSCCEEEEEEEEE--T---TEEEEEESSCCTTCBTTCEEEECSSSCEEECSGGGBTCEECTTSCBCSSSCS
T ss_pred ceEEEee-CCCcEEEEEeEEec--C---CeEEEEeccCccCCCCCCEEEEcCCcceeeccccccCCEEcccCcCcCCcCC
Confidence 4445543 23334556666322 1 2246778999999999999999999999999999999999999999999998
Q ss_pred ccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc-CCCeEEEEEeec
Q psy210 216 FLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK-NKNVICIYVCIG 294 (915)
Q Consensus 216 ~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~-~~~~~~V~~~iG 294 (915)
+....+||++..+|++.+|..+++||+||||+||+|+|||||||++|||++|+|||+|+.+++.|++ +++.+|||++||
T Consensus 112 ~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iG 191 (482)
T 2ck3_D 112 IKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 191 (482)
T ss_dssp CCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEES
T ss_pred CCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECC
Confidence 8888889999999999999999999999999999999999999999999999999999555555553 232348999999
Q ss_pred cchhhHHHHHHHHhccCCcc------eEEEEEecCCCCHHHhhhhhhhhhhhHHHHHh-cCCcEEEEeccchhHHHHHHH
Q psy210 295 QKISSLINVINKLKYYNCMD------YTVVVAATAADSAAEQYISPYTGCTIGEYFRD-LGQDCLIIYDDLTKHAWAYRQ 367 (915)
Q Consensus 295 er~~ev~~~~~~l~~~~~~~------~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~-~g~~Vlv~~Ddltr~a~A~re 367 (915)
||++|+++|++++++.++++ ||++|++++|+||.+|++++|+|+|+|||||| +|+|||+++|||||||+|+||
T Consensus 192 ER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rE 271 (482)
T 2ck3_D 192 ERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSE 271 (482)
T ss_dssp CCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHH
T ss_pred CcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHH
Confidence 99999999999999999998 99999999999999999999999999999999 999999999999999999999
Q ss_pred HHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCccccccccccCcEEE
Q psy210 368 ISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIF 447 (915)
Q Consensus 368 is~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~pi~~~~~~i~dgqi~ 447 (915)
||+++||||+++||||++|+.|++|+||||+. ++||||++++|++|+||++|||||++++|+||||+
T Consensus 272 is~~lge~P~~~GYpp~l~~~l~~l~ERag~~-------------~~GSIT~i~tv~v~~dD~tdPi~d~~~~i~dG~iv 338 (482)
T 2ck3_D 272 VSALLGRIPSAVGYQPTLATDMGTMQERITTT-------------KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTV 338 (482)
T ss_dssp HHGGGTCCCCGGGCCTTHHHHHHHHHTTSSCC-------------SSCCEEEEEEEECGGGCTTSHHHHHHGGGCSEEEE
T ss_pred hhhhcCCCCccccCchhHHHHhHHHHHhhcCC-------------CCCceeeeEEEEecCCCCCCccHHHHHHhcCeEEE
Confidence 99999999999999999999999999999853 27999999999999999999999999999999999
Q ss_pred eehhhhhcCCCCeeeecCCccccccc-cccHHHHHHHHHHHHHHHhhHHHHhhhhc-c-CCCCHHHHHHHHhHHHHHHHh
Q psy210 448 LDTNLFNSNYRPAINVGLSVSRVGGA-AQYKIVKKLSGDIRIMLAQYRELESFSKF-S-SDLDIVTKTQLYNGEKISLLM 524 (915)
Q Consensus 448 Lsr~la~~g~~PaId~~~S~SR~~~~-~~~~~~~~~a~~lr~~la~~~e~e~l~~l-G-~~ld~~~~~~L~~~~~i~~fL 524 (915)
|||+||++||||||||+.|+||+|.. .+.++|+++++++|+.|++|+|+++++++ | +.++++++++++++++|++||
T Consensus 339 Lsr~La~~giyPAIDvl~S~SR~~~~~i~~~~~~~~a~~lr~~la~y~el~~li~i~G~~~l~~~d~~~l~~~~~i~~fL 418 (482)
T 2ck3_D 339 LSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 418 (482)
T ss_dssp BCHHHHTTTCSSCBCTTSCEETTCSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHT
T ss_pred EcHHHHhCCCCCccCcccccccCCCcccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999844 67799999999999999999999999875 6 469999999999999999999
Q ss_pred hcCCC----------CCccHHHHHHHHHHHhcccccccchhh
Q psy210 525 KQKPH----------ENYSIVELIIILLIIKNRFFFKIPIKQ 556 (915)
Q Consensus 525 ~Q~~~----------e~~s~ee~l~~L~ai~~G~Ld~vp~~e 556 (915)
+|+.+ +..++++++..+..+..|-+|.+|.+.
T Consensus 419 ~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~g~~d~~pe~~ 460 (482)
T 2ck3_D 419 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQA 460 (482)
T ss_dssp CCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTTTTTTSCGGG
T ss_pred cCCchHHHHhhcCccccCCHHHHHHHHHHHhcccccCCCHHH
Confidence 99965 889999999999999889999988754
No 13
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=3.7e-90 Score=787.15 Aligned_cols=334 Identities=23% Similarity=0.379 Sum_probs=318.1
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
...+.+|+++.+.+++|+++.||++|++|++||++++||||+++||||+|++|+|||+++++...+++|++..+|++++|
T Consensus 60 ~g~v~~l~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R 139 (513)
T 3oaa_A 60 YAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIER 139 (513)
T ss_dssp EEEEEEECSSCEEEEESSCCSSCCTTCEEECCSCSSEEECSGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSC
T ss_pred EEEEEEeeCCEEEEEEeCCccCCCCCCEEEEcCCCCeEeeCHHHhccchhhcCcCccCCCCCCccceeecccCCCCcccc
Confidence 35668999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCcc
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVL 739 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~ 739 (915)
.++++|++||||+||+|+|||||||++|||++|+|||+|+.+++.|++ .+..+|||++||||++||++|+++++++|+|
T Consensus 140 ~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m 218 (513)
T 3oaa_A 140 QSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR-DSGIKCIYVAIGQKASTISNVVRKLEEHGAL 218 (513)
T ss_dssp CCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS-SSSCEEEEEEESCCHHHHHHHHHHHHHHSCS
T ss_pred CCcCcccccceeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhc-cCCceEEEEEecCChHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999654455543 2233589999999999999999999999999
Q ss_pred ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHH
Q psy210 740 DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819 (915)
Q Consensus 740 ~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ 819 (915)
+||+||++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+
T Consensus 219 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLl 298 (513)
T 3oaa_A 219 ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLL 298 (513)
T ss_dssp TTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC---------------CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCccccc
Q psy210 820 ERISST---------------KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQL 884 (915)
Q Consensus 820 ERag~~---------------~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~ 884 (915)
||||+. ++||||++|+|++|+||++||||+++++||||||+|||+||++||||||||+.|+||+|
T Consensus 299 ERAg~~~~~~~~~~~~~~~~g~~GSITal~~V~~~~dD~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~ 378 (513)
T 3oaa_A 299 ERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVG 378 (513)
T ss_dssp TTCSEECHHHHHHHHTTSCCSCCEEEEECCEEECGGGCCSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSG
T ss_pred HHHhhcccccchhccccccCCCCcceEEEEEEEcCCCCccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccC
Confidence 999962 38999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 885 DPYIVGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 885 ~~~~~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
+ ..+.++|+++++++|+.|++|+|++++++
T Consensus 379 ~-~~~~~~~~~va~~lr~~la~y~el~~~~~ 408 (513)
T 3oaa_A 379 G-AAQTKIMKKLSGGIRTALAQYRELAAFSQ 408 (513)
T ss_dssp G-GGSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c-ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 56789999999999999999999999874
No 14
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=3.4e-89 Score=782.72 Aligned_cols=333 Identities=25% Similarity=0.386 Sum_probs=318.9
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
.+++++|+++.+.+++|+++.||+.|+.|++||+++++|||+++||||+|++|+|||+++++...++||++..+|++++|
T Consensus 60 ~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R 139 (502)
T 2qe7_A 60 MGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDR 139 (502)
T ss_dssp EEEEEEEETTEEEEEECSCCSSCCTTCEEEEEEEESEEECSGGGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSB
T ss_pred EEEEEEecCCeEEEEEecCccCCcCCCEEEEeCCcceEEcccccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccc
Confidence 36778999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCc-EEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKG-CSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~-~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
.++++|++||||+||+|+|||||||++|||++|+|||+|+.+++.|++ ++| +|||++||||++||+||+++++++++
T Consensus 140 ~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~ 217 (502)
T 2qe7_A 140 KSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQKQSTVAGVVETLRQHDA 217 (502)
T ss_dssp CCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCccccceeecccccccccCCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCcchHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999554444544 256 58999999999999999999999999
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l 818 (915)
|+||+||++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|
T Consensus 218 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL 297 (502)
T 2qe7_A 218 LDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRL 297 (502)
T ss_dssp STTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHH
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHH
Q psy210 819 QERISST----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHY 894 (915)
Q Consensus 819 ~ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~ 894 (915)
+||||+. ++||||++++|++++||++||||+++++||||||+|||+||++||||||||+.|+||+|+ ..+.++|+
T Consensus 298 ~ERAg~~~~~~~~GSITal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~-~~~~~~~~ 376 (502)
T 2qe7_A 298 LERAAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGG-AAQIKAMK 376 (502)
T ss_dssp HTSCCBBCTTTTCCEEEEEEEEECSTTCCSSHHHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGG-GGSCHHHH
T ss_pred HHhhhcccccCCCcceeEEEEEEccCCCcccchhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCC-ccCCHHHH
Confidence 9999985 579999999999999999999999999999999999999999999999999999999995 56789999
Q ss_pred HHHHHHHHHHHccHhhhhccC
Q psy210 895 KVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 895 ~~~~~~r~~l~~~~e~~~~~~ 915 (915)
++++++|++|++|+|++++++
T Consensus 377 ~~a~~lr~~la~y~el~~~~~ 397 (502)
T 2qe7_A 377 KVAGTLRLDLAQYRELQAFAQ 397 (502)
T ss_dssp HHHHHHHHHHHHHHHGGGSTT
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999999874
No 15
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=1.2e-89 Score=784.21 Aligned_cols=333 Identities=23% Similarity=0.381 Sum_probs=307.2
Q ss_pred hhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccccc
Q psy210 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIF 661 (915)
Q Consensus 582 v~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~~ 661 (915)
.+..|+++.+.+++|+++.||++|++|++||+++++|||+++||||+|++|+|||+++++....++|+++.||+|++|.+
T Consensus 52 eV~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpvg~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~ 131 (469)
T 2c61_A 52 QVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLP 131 (469)
T ss_dssp EEEEECSSEEEEEEC-------------CEEEBCEEEECGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCC
T ss_pred EEEEEeCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEccccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccc
Confidence 44689999999999999999999999999999999999999999999999999999998887788999999999999999
Q ss_pred ccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCC---cEEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 662 NNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHK---GCSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~---~~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
++++++||||+||+|+|||||||++|||++|+|||+|+++|+++...|++ ++|||++||||++||+||+++++++++
T Consensus 132 ~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~ 211 (469)
T 2c61_A 132 PKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGA 211 (469)
T ss_dssp CCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSG
T ss_pred cccccceeeEeeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999998765443 689999999999999999999999999
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHH-HCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~-~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~ 817 (915)
|+||++|++|||+||.+|+++||+|+|+||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|++|++
T Consensus 212 m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~ 291 (469)
T 2c61_A 212 LERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLAT 291 (469)
T ss_dssp GGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHH
T ss_pred ccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhh
Confidence 999999999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC--CCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCC----CCH
Q psy210 818 LQERISS--TKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYI----VGE 891 (915)
Q Consensus 818 l~ERag~--~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~----~~~ 891 (915)
||||||+ .++||||+|+||++|+||++|||++++++||||||+|||+||++||||||||+.|+||+|++.+ +++
T Consensus 292 l~ERAg~~~~~~GSIT~i~~v~~~~dD~~dPI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~~~ 371 (469)
T 2c61_A 292 LYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTRE 371 (469)
T ss_dssp HHTSCEEBTTSSCEEEEEEEEECCSCTTTSCCCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCT
T ss_pred HHhhccccCCCCCceeeeeeeecCCCCcCcchHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccCCH
Confidence 9999987 5689999999999999999999999999999999999999999999999999999999996543 789
Q ss_pred HHHHHHHHHHHHHHccHhhhhcc
Q psy210 892 EHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 892 ~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
+|+++++++++.|++|+||+++.
T Consensus 372 ~~~~~a~~l~~~l~~~~eL~~i~ 394 (469)
T 2c61_A 372 DHKAVSDQMYAGYAEGRDLRGLV 394 (469)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 16
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=1.3e-89 Score=778.57 Aligned_cols=333 Identities=26% Similarity=0.393 Sum_probs=318.2
Q ss_pred hhhhccccceeeeccccCccCcc-cCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 581 KVQQQIGENIVRTIAFGNTNGIK-RNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 581 ev~~~l~~~~v~l~~~~~~~gl~-~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
..+..|+++.+.+++|+++.||+ .|++|++||+++++|||+++||||+|++|+|||+++++...+++|+++.+|+|++|
T Consensus 49 geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R 128 (465)
T 3vr4_D 49 GQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIAR 128 (465)
T ss_dssp EEEEEEESSEEEEEETTCCTTCCTTTCEEEECSSCCEEEECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTE
T ss_pred EEEEEEeCCeEEEEEecCccccccCCCEEEECCCcceeecchhhccceeccCCcccCCCCCCcccceeeccCcccCchhc
Confidence 34469999999999999999999 89999999999999999999999999999999999998888889999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHh--cCCc-EEEEEEecCCCchHHHHHHHhhhc
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAI--EHKG-CSVFIGVGERSREGNDFYHEMKES 736 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~--~~~~-~~v~~~iGer~~ev~e~~~~~~~~ 736 (915)
.+++++++||||+||+|+|||||||++|||++|+|||+|+.+|+++..+ ++++ +|||++||||++||+||+++++++
T Consensus 129 ~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~ 208 (465)
T 3vr4_D 129 DYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQT 208 (465)
T ss_dssp ECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred cCcccccccCceEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999987654 2222 799999999999999999999999
Q ss_pred CccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHH-CCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHH
Q psy210 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815 (915)
Q Consensus 737 ~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~-~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l 815 (915)
++|+||++|++|+|+||.+|+++||+|+|+|||||| +|+|||++|||+||||+|+||||+++||||+++||||++|++|
T Consensus 209 g~~~rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l 288 (465)
T 3vr4_D 209 GAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNL 288 (465)
T ss_dssp TGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHH
T ss_pred CCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHh
Confidence 999999999999999999999999999999999999 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC--CCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCC---
Q psy210 816 GKLQERISS--TKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVG--- 890 (915)
Q Consensus 816 ~~l~ERag~--~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~--- 890 (915)
++||||||+ .++||||+|+||++|+||++|||++++++||||||+|||+||++||||||||+.|+||+|+ .+++
T Consensus 289 ~~l~ERAg~~~~~~GSIT~i~tv~~~~dD~~~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~-~~ig~~~ 367 (465)
T 3vr4_D 289 ATLFERAGRIRGLKGSVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKD-KGTGAGK 367 (465)
T ss_dssp HHHHTSCEEETTCSCEEEEEEEEECGGGCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGG-GSCSTTT
T ss_pred HHHHHhhhccCCCCCcEEEEEEEEecCCCcccchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcch-hhcCccc
Confidence 999999997 4589999999999999999999999999999999999999999999999999999999995 4556
Q ss_pred --HHHHHHHHHHHHHHHccHhhhhcc
Q psy210 891 --EEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 891 --~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
++|++++++++++|++|+|++++.
T Consensus 368 ~~~~h~~~a~~l~~~~~~~~el~~i~ 393 (465)
T 3vr4_D 368 TREDHAATMNQLFAAYAQGKQAKELA 393 (465)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999985
No 17
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=3.4e-89 Score=784.07 Aligned_cols=335 Identities=25% Similarity=0.389 Sum_probs=319.7
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
.+++++|+++.+.+++|+++.||+.|+.|++||+++++|||+++||||+|++|+|||+++++...++||++..+|++++|
T Consensus 60 ~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R 139 (510)
T 2ck3_A 60 KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPR 139 (510)
T ss_dssp EEEEEEECSSCEEEEESSCGGGCCTTCEEEECCCCCEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTB
T ss_pred eEEEEeccCCeEEEEEECCcccccCCCEEEEeCCcceeecCccceeeEEccCCcCcCCCCCCCccceeecccCCCCcccc
Confidence 36778999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHH-HHHHHHHHh-----cCCc-EEEEEEecCCCchHHHHHHH
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNM-MELIRNIAI-----EHKG-CSVFIGVGERSREGNDFYHE 732 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll-~~i~~~~~~-----~~~~-~~v~~~iGer~~ev~e~~~~ 732 (915)
.++++|++||||+||+|+|||||||++|||++|+|||+|+ .+|+++..+ +++| +|||++||||++||++|+++
T Consensus 140 ~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~ 219 (510)
T 2ck3_A 140 ISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKR 219 (510)
T ss_dssp CCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHH
T ss_pred cccCccccccceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999995 455554442 2345 69999999999999999999
Q ss_pred hhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhh
Q psy210 733 MKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLA 812 (915)
Q Consensus 733 ~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~ 812 (915)
++++++|+||+||++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|
T Consensus 220 ~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf 299 (510)
T 2ck3_A 220 LTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 299 (510)
T ss_dssp HHHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHH
T ss_pred HHhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCC
Q psy210 813 EEMGKLQERISST----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYI 888 (915)
Q Consensus 813 ~~l~~l~ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~ 888 (915)
+.|++|+||||+. ++||||++++|++++||++||||+++++||||||+|||+||++||||||||+.|+||+|+ ..
T Consensus 300 ~~~~rLlERAg~~~~~~~~GSITal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~-~~ 378 (510)
T 2ck3_A 300 YLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGS-AA 378 (510)
T ss_dssp HHHHHHHTTCEEBCGGGTSCEEEEEEEEECSTTCTTSHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGG-GG
T ss_pred HhhHHHHHhhhcccccCCCcceeEeeeeccCCCCccccchHhhhcccceEEEEehhHhhCCCCCcccchhccccccc-cc
Confidence 9999999999985 579999999999999999999999999999999999999999999999999999999995 56
Q ss_pred CCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 889 VGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 889 ~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
+.++|+++++++|++|++|+|++++++
T Consensus 379 ~~~~~~~~a~~lr~~la~y~el~~~~~ 405 (510)
T 2ck3_A 379 QTRAMKQVAGTMKLELAQYREVAAFAQ 405 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHGGGSS
T ss_pred CCHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 789999999999999999999999874
No 18
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=2.5e-89 Score=776.04 Aligned_cols=334 Identities=25% Similarity=0.408 Sum_probs=319.3
Q ss_pred hhhhccccceeeeccccCccCcc-cCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 581 KVQQQIGENIVRTIAFGNTNGIK-RNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 581 ev~~~l~~~~v~l~~~~~~~gl~-~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
..+..|+++.+.+++|+++.||+ .|+.|++||+++++|||+++||||+|++|+|||+++++...+++|+++.||+|++|
T Consensus 45 geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R 124 (464)
T 3gqb_B 45 GQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVAR 124 (464)
T ss_dssp EEEEEEESSEEEEEESSCCTTCCSSSCEEEEEESSCEEEECSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGB
T ss_pred EEEEEEeCCeEEEEEecCccccccCCCEEEECCCCcEEEeChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhc
Confidence 34568999999999999999999 99999999999999999999999999999999999998888889999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhc---------CCc-EEEEEEecCCCchHHHH
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE---------HKG-CSVFIGVGERSREGNDF 729 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~---------~~~-~~v~~~iGer~~ev~e~ 729 (915)
.+++++++||||+||+|+|||||||++|||++|+|||+|+.+|+++..++ +++ +|||++||||++||+||
T Consensus 125 ~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~ 204 (464)
T 3gqb_B 125 RKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYF 204 (464)
T ss_dssp CCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHH
T ss_pred cCccccccCcceeeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHH
Confidence 99999999999999999999999999999999999999999999876542 333 89999999999999999
Q ss_pred HHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHH-CCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCc
Q psy210 730 YHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQ 808 (915)
Q Consensus 730 ~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~-~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp 808 (915)
+++++++|+|+||++|++|+|+||.+|+++||+|+|+|||||| +|+|||++|||+||||+|+||||+++||||+++|||
T Consensus 205 ~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp 284 (464)
T 3gqb_B 205 IQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYP 284 (464)
T ss_dssp HHHHHHTSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSB
T ss_pred HHHhhhcccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCC
Confidence 9999999999999999999999999999999999999999999 599999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcC--CCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCC
Q psy210 809 PTLAEEMGKLQERISS--TKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDP 886 (915)
Q Consensus 809 ~~l~~~l~~l~ERag~--~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~ 886 (915)
|++|++|++||||||+ .++||||+++||++|+||++|||++++++||||||+|||+||++||||||||+.|+||+|+
T Consensus 285 ~~~f~~l~~l~ERag~~~~~~GSIT~l~~v~~~~dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~- 363 (464)
T 3gqb_B 285 GYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMN- 363 (464)
T ss_dssp TTHHHHHHHHHTSCBCBTTCSCEEEEEEEEEETTSCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGG-
T ss_pred chHHHHhHHHHHhhcccCCCCCcEEEEEEEEccCCCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcch-
Confidence 9999999999999998 4589999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCC-----HHHHHHHHHHHHHHHccHhhhhccC
Q psy210 887 YIVG-----EEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 887 ~~~~-----~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
.+++ ++|+++++++++.|++|+|++++.+
T Consensus 364 ~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~ 397 (464)
T 3gqb_B 364 NGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVA 397 (464)
T ss_dssp GTSSTTTSCTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556 8999999999999999999999863
No 19
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=3.3e-89 Score=782.36 Aligned_cols=332 Identities=25% Similarity=0.385 Sum_probs=318.0
Q ss_pred hhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCccccc
Q psy210 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQI 660 (915)
Q Consensus 581 ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r~ 660 (915)
+++++|+++.+.+++|+++.||+.|+.|++||+++++|||+++||||+|++|+|+|+++++...++||++..+|++++|.
T Consensus 74 g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~ 153 (515)
T 2r9v_A 74 GVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRK 153 (515)
T ss_dssp EEEEECCTTCEEEEEESCCTTCCTTCEEEEEEEECEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBC
T ss_pred EEEEEecCCeEEEEEecCcccccCCCEEEEeCCcceeecCccceeeEEcCCCCCcCCCCCCCccceeecccCCCCccccc
Confidence 66789999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred cccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCc-EEEEEEecCCCchHHHHHHHhhhcCcc
Q psy210 661 FNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKG-CSVFIGVGERSREGNDFYHEMKESNVL 739 (915)
Q Consensus 661 ~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~-~~v~~~iGer~~ev~e~~~~~~~~~~~ 739 (915)
++++|++||||+||+|+|||||||++|||++|+|||+|+.+++.|++ ++| +|||++||||++||+||+++++++++|
T Consensus 154 ~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m 231 (515)
T 2r9v_A 154 PVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAM 231 (515)
T ss_dssp CCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGG
T ss_pred CCCcchhcCccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999554444443 256 589999999999999999999999999
Q ss_pred ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHH
Q psy210 740 DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819 (915)
Q Consensus 740 ~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ 819 (915)
+||+||++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+
T Consensus 232 ~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLl 311 (515)
T 2r9v_A 232 EYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLL 311 (515)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHH
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHH
Q psy210 820 ERISST----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895 (915)
Q Consensus 820 ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~ 895 (915)
||||+. ++||||++|||++++||++||||+++++||||||+|||+||++||||||||+.|+||+|+ .++.++|++
T Consensus 312 ERAg~~~~~~~~GSITal~~v~~~~~D~s~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~-~~~~~~~~~ 390 (515)
T 2r9v_A 312 ERAVRLNDKLGGGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGG-SAQIKAMKQ 390 (515)
T ss_dssp TTCEEBCTTTTSCEEEEEEEEEESTTCTTSHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGT-TTSCHHHHH
T ss_pred HHHhhccccCCCcceEEeeeeeccCCCccccchhhhccccceEEEEchHHHhCCCCCeeccccccccCCc-ccCCHHHHH
Confidence 999985 579999999999999999999999999999999999999999999999999999999995 678899999
Q ss_pred HHHHHHHHHHccHhhhhccC
Q psy210 896 VANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 896 ~~~~~r~~l~~~~e~~~~~~ 915 (915)
+++++|++|++|+|++++++
T Consensus 391 ~a~~lr~~la~y~el~~~~~ 410 (515)
T 2r9v_A 391 VAGMLRIDLAQYRELETFAQ 410 (515)
T ss_dssp HHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999864
No 20
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=5.4e-89 Score=781.90 Aligned_cols=333 Identities=23% Similarity=0.343 Sum_probs=318.5
Q ss_pred hhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcccc
Q psy210 580 NKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQ 659 (915)
Q Consensus 580 ~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~~r 659 (915)
.+++++|+++.+.+++|+++.||+.|+.|++||+++++|||+++||||+|++|+|||+++++...++||++..+|++++|
T Consensus 61 ~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R 140 (507)
T 1fx0_A 61 IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSR 140 (507)
T ss_dssp EEEEEEECSSEEEEEECSCGGGCCTTCEEECCCCCCEEEESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSB
T ss_pred eEEEEeccCCeEEEEEecCccCCcCCCEEEEeCCcceeecCccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccc
Confidence 36778999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred ccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCc-EEEEEEecCCCchHHHHHHHhhhcCc
Q psy210 660 IFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKG-CSVFIGVGERSREGNDFYHEMKESNV 738 (915)
Q Consensus 660 ~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~-~~v~~~iGer~~ev~e~~~~~~~~~~ 738 (915)
.++++|++||||+||+|+|||||||++|||++|+|||+|+.+++.|++. +| +|||++||||++||++|+++++++++
T Consensus 141 ~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~ 218 (507)
T 1fx0_A 141 RSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIGQKASSVAQVVTNFQERGA 218 (507)
T ss_dssp CCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEESCCHHHHHHHHHHTGGGTG
T ss_pred cccCCcccccceecccccccccCCEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCchHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999995544444432 45 68999999999999999999999999
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l 818 (915)
|+||+||++|+|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|
T Consensus 219 m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srL 298 (507)
T 1fx0_A 219 MEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRL 298 (507)
T ss_dssp GGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTT
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHH
Q psy210 819 QERISST----KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHY 894 (915)
Q Consensus 819 ~ERag~~----~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~ 894 (915)
+||||+. ++||||+++||++|+||++||||+++++||||||+|||+||++||||||||+.|+||+|+ ..+.++|+
T Consensus 299 lERAg~~~~~~~~GSITal~~v~~~~~D~s~pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~-~~~~~~~~ 377 (507)
T 1fx0_A 299 LERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGS-AAQIKAMK 377 (507)
T ss_dssp GGGCCBBCTTTTSCEEEECCEEECSTTCTTSHHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGG-GGSCHHHH
T ss_pred HHhhhhccccCCCcceeeeeeeeccCCCcccchHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccc-cCCCHHHH
Confidence 9999985 579999999999999999999999999999999999999999999999999999999995 56789999
Q ss_pred HHHHHHHHHHHccHhhhhccC
Q psy210 895 KVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 895 ~~~~~~r~~l~~~~e~~~~~~ 915 (915)
++++++|++|++|+|++++++
T Consensus 378 ~~a~~lr~~la~y~el~~~~~ 398 (507)
T 1fx0_A 378 KVAGKLKLELAQFAELEAFAQ 398 (507)
T ss_dssp HHHHHHHHHHHHHHHHTTTGG
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999864
No 21
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=1.1e-86 Score=766.24 Aligned_cols=429 Identities=20% Similarity=0.263 Sum_probs=372.7
Q ss_pred ceeeecc-eeEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCcccee
Q psy210 114 YSSIIRF-AYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEI 192 (915)
Q Consensus 114 ~a~~~r~-g~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~v 192 (915)
.-++.+. |-.++-.......+++.+++.. . .+.|+|.+.+| +. +.+++|+++.|++.|++|.+||+++++
T Consensus 10 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~~-~--~l~gEVi~~~~--d~----a~i~v~e~t~Gl~~G~~V~~tG~~lsV 80 (600)
T 3vr4_A 10 IGKIIKVSGPLVMAENMSEASIQDMCLVGD-L--GVIGEIIEMRQ--DV----ASIQVYEETSGIGPGEPVRSTGEALSV 80 (600)
T ss_dssp CEEEEEEETTEEEEESCTTSCTTCEEEETT-T--TEEEEEEEEET--TE----EEEEESSCCTTCCTTCEEEECSSSSEE
T ss_pred ceEEEEEECcEEEEEcCCCCccCCEEEECC-C--cEEEEEEEEcC--Cc----EEEEEccCCCCCCCCCEEEECCCCCEE
Confidence 3455554 3566666666678899998843 2 36799999998 33 378999999999999999999999999
Q ss_pred ccccccceeEeCCCceeecCC----C-----------ccccc--------------------------------------
Q psy210 193 PVGFELLGRIVNSKGEFIDNK----K-----------KFLIK-------------------------------------- 219 (915)
Q Consensus 193 pvg~~lLGrviD~lG~PiD~~----~-----------~~~~~-------------------------------------- 219 (915)
++|+++||||+|++|+|||++ + ++...
T Consensus 81 ~vG~~lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp 160 (600)
T 3vr4_A 81 ELGPGIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPN 160 (600)
T ss_dssp EESTTCTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCT
T ss_pred EeCHHHHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCC
Confidence 999999999999999999986 3 11111
Q ss_pred -----------------------------------ccccccccCCCCCcccccCccccccceeeeccccccccceeeeec
Q psy210 220 -----------------------------------NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIG 264 (915)
Q Consensus 220 -----------------------------------~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g 264 (915)
++||+.. ||++.+|.++++||+||||+||+|+|||||||++|||
T Consensus 161 ~~~g~v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg 239 (600)
T 3vr4_A 161 GIKGTVQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRR-GRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPG 239 (600)
T ss_dssp TCCEEEEEECCEEECTTSCCEEEEETTEEEEECSCEEEETTS-CCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEEC
T ss_pred CCCceEEEecCCcceeceeEEEEeccCCcccccccccccccC-CCchhhccCCCceecccchhhhccCCccCCCEEeeec
Confidence 1223322 3445689999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhc-------cCCcceEEEEEecCCCCHHHhhhhhhhh
Q psy210 265 DRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKY-------YNCMDYTVVVAATAADSAAEQYISPYTG 337 (915)
Q Consensus 265 ~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~tvvv~~~a~~~~~~r~~~~~~a 337 (915)
++|+|||+| +.+|++|++.++ |||++||||++|+++|+++|++ .++|+||++|++++|+||.+|+++||+|
T Consensus 240 g~g~GKT~L-~~~ia~~~~~~v-~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~~~~~a 317 (600)
T 3vr4_A 240 PFGAGKTVV-QHQIAKWSDVDL-VVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTG 317 (600)
T ss_dssp CTTSCHHHH-HHHHHHHSSCSE-EEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHHHHHHH
T ss_pred CCCccHHHH-HHHHHhccCCCE-EEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHH
Confidence 999999999 678999998886 9999999999999999999976 5689999999999999999999999999
Q ss_pred hhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCcc
Q psy210 338 CTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTL 417 (915)
Q Consensus 338 ~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSi 417 (915)
+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++||||||+++... + .+++|||
T Consensus 318 ltiAEyfrd~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~-~-----~~~~GSI 391 (600)
T 3vr4_A 318 ITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALG-S-----DQREGSI 391 (600)
T ss_dssp HHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSS-T-----TCCEEEE
T ss_pred HHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhccccccC-C-----CCCCcce
Confidence 999999999999999999999999999999999999999999999999999999999999985311 0 1247999
Q ss_pred ceeEEEEecCCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCcccccccc-------ccHHHHHHHHHHHHHH
Q psy210 418 TAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA-------QYKIVKKLSGDIRIML 490 (915)
Q Consensus 418 T~~~~v~~~~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~-------~~~~~~~~a~~lr~~l 490 (915)
|++++|++|+||++||||+++++|+||||+|||+||++||||||||+.|+||++..+ ..++|.+++.+++++|
T Consensus 392 T~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~l 471 (600)
T 3vr4_A 392 TAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRIL 471 (600)
T ss_dssp EEEEEECCSSSCTTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcccccccccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999743 4688999999999999
Q ss_pred HhhHHHHhhhhc-c-CCCCHHHHHHHHhHHHHH-HHhhcCCCCC----ccHHHHHHHHHHHh------ccccc-ccchhh
Q psy210 491 AQYRELESFSKF-S-SDLDIVTKTQLYNGEKIS-LLMKQKPHEN----YSIVELIIILLIIK------NRFFF-KIPIKQ 556 (915)
Q Consensus 491 a~~~e~e~l~~l-G-~~ld~~~~~~L~~~~~i~-~fL~Q~~~e~----~s~ee~l~~L~ai~------~G~Ld-~vp~~e 556 (915)
++|+|+++++++ | ++|+++++..++++++|+ +||+|+.|++ .++++++..|..+. ..+++ .++.++
T Consensus 472 a~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~~~ 551 (600)
T 3vr4_A 472 QEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNE 551 (600)
T ss_dssp HHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999999995 7 469999999999999997 6999998766 79999998887642 12332 456677
Q ss_pred HHHH
Q psy210 557 IELF 560 (915)
Q Consensus 557 v~~f 560 (915)
+..+
T Consensus 552 i~~~ 555 (600)
T 3vr4_A 552 IMEG 555 (600)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 22
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=7e-87 Score=765.04 Aligned_cols=403 Identities=21% Similarity=0.256 Sum_probs=360.4
Q ss_pred eEEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecccccccee
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGR 201 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGr 201 (915)
-.++-.+.....+++.+++.. . .+.|+|.+.+| +. +.+++|+++.|++.|++|.+||+++++++|+++|||
T Consensus 12 ~vv~v~g~~~~~~gE~v~v~~-~--~l~gEVi~~~~--d~----~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGr 82 (578)
T 3gqb_A 12 PAVIAKGMLGARMYDISKVGE-E--GLVGEIIRLDG--DT----AFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNG 82 (578)
T ss_dssp TEEEEESCTTCCTTEEEEETT-T--TEEEEEEEEET--TE----EEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTC
T ss_pred CEEEEEcCCCCccCCEEEECC-C--cEEEEEEEEcC--Cc----EEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhh
Confidence 455566665567888888843 2 36799999998 33 378899999999999999999999999999999999
Q ss_pred EeCCCceeecCC----Cc----------cccc------------------------------------------------
Q psy210 202 IVNSKGEFIDNK----KK----------FLIK------------------------------------------------ 219 (915)
Q Consensus 202 viD~lG~PiD~~----~~----------~~~~------------------------------------------------ 219 (915)
|+|++|+|||++ ++ +...
T Consensus 83 V~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i~~ 162 (578)
T 3gqb_A 83 IYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKP 162 (578)
T ss_dssp EECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEECC
T ss_pred hhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeEEecc
Confidence 999999999987 21 1111
Q ss_pred ----------------------ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHH
Q psy210 220 ----------------------NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDT 277 (915)
Q Consensus 220 ----------------------~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~ 277 (915)
++||+..+ +++.+|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+
T Consensus 163 ~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l-~~~ 240 (578)
T 3gqb_A 163 AGEYTVEEPVVVLEDGTELKMYHTWPVRRA-RPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT-QQS 240 (578)
T ss_dssp SEEECTTSCSEEETTCCEECSCEEEETTSC-CCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHH-HHH
T ss_pred CCcccccceeEEeecCccccccccccccCC-CChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHH-HHH
Confidence 12233322 346689999999999999999999999999999999999999999 568
Q ss_pred HHhhcCCCeEEEEEeeccchhhHHHHHHHHhc-------cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCc
Q psy210 278 IINQKNKNVICIYVCIGQKISSLINVINKLKY-------YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQD 350 (915)
Q Consensus 278 i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~ 350 (915)
|++|++.++ |||++||||++|+++|+++|++ .++|+||++|++++|+||.+|+++||+|+|+||||||+|+|
T Consensus 241 ia~~~~~~v-~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyfrd~G~d 319 (578)
T 3gqb_A 241 LAKWSNADV-VVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFS 319 (578)
T ss_dssp HHHHSSCSE-EEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHhccCCCE-EEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999998886 9999999999999999999976 56899999999999999999999999999999999999999
Q ss_pred EEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCC
Q psy210 351 CLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDV 430 (915)
Q Consensus 351 Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~ 430 (915)
||+++||+||||+|+||||+++||||+++||||++|+.+++||||||+++... +++||||++++|++|+||+
T Consensus 320 VLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~--------~~~GSIT~i~~v~~~gdD~ 391 (578)
T 3gqb_A 320 VALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLG--------GEEGAVTIVGAVSPPGGDM 391 (578)
T ss_dssp EEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTT--------SCEEEEEEEEECCCTTTCT
T ss_pred EEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCC--------CCCcceEEEEEEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999986422 2379999999999999999
Q ss_pred CCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccc-------cccHHHHHHHHHHHHHHHhhHHHHhhhh-c
Q psy210 431 TSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGA-------AQYKIVKKLSGDIRIMLAQYRELESFSK-F 502 (915)
Q Consensus 431 ~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~-------~~~~~~~~~a~~lr~~la~~~e~e~l~~-l 502 (915)
+||||+++++|+||||+|||+||++||||||||+.|+||++.. ...++|.+++.+++++|++|+|++++++ +
T Consensus 392 tdPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~i~ 471 (578)
T 3gqb_A 392 SEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLV 471 (578)
T ss_dssp TSHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTTTT
T ss_pred CCcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999974 3568999999999999999999999999 4
Q ss_pred c-CCCCHHHHHHHHhHHHHH-HHhhcCCCCC----ccHHHHHHHHHHH
Q psy210 503 S-SDLDIVTKTQLYNGEKIS-LLMKQKPHEN----YSIVELIIILLII 544 (915)
Q Consensus 503 G-~~ld~~~~~~L~~~~~i~-~fL~Q~~~e~----~s~ee~l~~L~ai 544 (915)
| ++|+++++..++++++|+ +||+|+.|++ .++++++..|..+
T Consensus 472 G~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~~d~~~~~~kq~~~l~~i 519 (578)
T 3gqb_A 472 GPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMI 519 (578)
T ss_dssp TGGGCCHHHHHHHHHHHHHHHHHTCCCSSSTTTTCCCHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCCCCCCceecCCHHHHHHHHHHH
Confidence 7 469999999999999996 6999998766 7999999888764
No 23
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=3.3e-87 Score=767.45 Aligned_cols=397 Identities=22% Similarity=0.280 Sum_probs=309.1
Q ss_pred ChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeCCCcee
Q psy210 130 DPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEF 209 (915)
Q Consensus 130 ~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~P 209 (915)
....+++.+++.. ..+.|+|.++++ +.+ .+++|+++.|++.|++|.+||+++++++|+++||||+|++|+|
T Consensus 21 ~~~~~gElv~v~~---~~l~geVi~l~~--d~~----~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gLLGrV~DglgrP 91 (588)
T 3mfy_A 21 KGAKMYEVVRVGE---LGLIGEIIRLEG--DKA----VIQVYEETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQRP 91 (588)
T ss_dssp -------------------------------------------------CCCCCSSSSSCCEEEESTTCTTCEEETTCCS
T ss_pred CCCccCCEEEEcC---CceEEEEEEecC--CeE----EEEEccCCCCCCCCCEEEEcCCCCEEEeCHHHHhhccCCCCCc
Confidence 3356777777732 236799999998 433 7899999999999999999999999999999999999999999
Q ss_pred ecCCCcccc-----------------------------------------------------------------------
Q psy210 210 IDNKKKFLI----------------------------------------------------------------------- 218 (915)
Q Consensus 210 iD~~~~~~~----------------------------------------------------------------------- 218 (915)
||++++...
T Consensus 92 Ld~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i~~~g~~~v~ 171 (588)
T 3mfy_A 92 LEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIE 171 (588)
T ss_dssp SSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEECCSEEECTT
T ss_pred ccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCceEEEeccCCccccc
Confidence 999753110
Q ss_pred ------------------cccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 219 ------------------KNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 219 ------------------~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
.++||+.. |+++++|.++++||+||||+||+|+|||||||++|||++|+|||+| +++|++
T Consensus 172 ~~i~~i~~~~g~~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g~GKT~L-~~~ia~ 249 (588)
T 3mfy_A 172 EVIAKVKTPSGEIKELKMYQRWPVRV-KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTVT-QHQLAK 249 (588)
T ss_dssp SEEEEEECTTCCEEEEESCEEEETTS-CCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCSHHHHHH-HHHHHH
T ss_pred ceEEEEecCCCccccccccccccccC-CCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCCCCHHHH-HHHHHh
Confidence 01233332 2335689999999999999999999999999999999999999999 677999
Q ss_pred hcCCCeEEEEEeeccchhhHHHHHHHHhc-------cCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEE
Q psy210 281 QKNKNVICIYVCIGQKISSLINVINKLKY-------YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353 (915)
Q Consensus 281 ~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv 353 (915)
|++.++ |||++||||++|+++|+++|++ .++|+||++|++++|+||.+|+++||+|+|+||||||+|+|||+
T Consensus 250 ~~~~~~-~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl 328 (588)
T 3mfy_A 250 WSDAQV-VIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAL 328 (588)
T ss_dssp HSSCSE-EEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCE-EEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 988885 9999999999999999999976 56899999999999999999999999999999999999999999
Q ss_pred EeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCCCc
Q psy210 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSF 433 (915)
Q Consensus 354 ~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~~p 433 (915)
++||+||||+|+||||+++||||+++||||++|+.+++||||||+++...+ .+++||||++++|++|+||++||
T Consensus 329 ~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~------~~~~GSIT~i~~v~~~gdD~sdp 402 (588)
T 3mfy_A 329 MADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGS------DYRVGSVSVIGAVSPPGGDFSEP 402 (588)
T ss_dssp EEECTTTCCCCC----------------CCHHHHHHHHHHTTCEEEECSSS------SCCEEEEEEEEECCCTTSCSSCS
T ss_pred eecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhccccccccCC------CCCCcceEEEEEEECCCCCCCCc
Confidence 999999999999999999999999999999999999999999999853110 12479999999999999999999
Q ss_pred cccccccccCcEEEeehhhhhcCCCCeeeecCCcccccccc-------ccHHHHHHHHHHHHHHHhhHHHHhhhh-ccC-
Q psy210 434 IPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA-------QYKIVKKLSGDIRIMLAQYRELESFSK-FSS- 504 (915)
Q Consensus 434 i~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~-------~~~~~~~~a~~lr~~la~~~e~e~l~~-lG~- 504 (915)
||+++++|+||||+|||+||++||||||||+.|+||++... ..++|.+++.+++++|++|+|++++++ +|.
T Consensus 403 i~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~~el~~ii~i~G~d 482 (588)
T 3mfy_A 403 VVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVGPD 482 (588)
T ss_dssp HHHHHHHHCSEECCBCHHHHHTTCSSCBCTTTCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred chHHHHHhccCeeecCHHHHhCCCCCCcCcccchhhhcccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999763 468999999999999999999999999 574
Q ss_pred CCCHHHHHHHHhHHHHH-HHhhcCCCCCc----cHHHHHHHHHHH
Q psy210 505 DLDIVTKTQLYNGEKIS-LLMKQKPHENY----SIVELIIILLII 544 (915)
Q Consensus 505 ~ld~~~~~~L~~~~~i~-~fL~Q~~~e~~----s~ee~l~~L~ai 544 (915)
+|+++++..++++++|+ +||+|+.|+++ ++++++..|..+
T Consensus 483 ~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~~i 527 (588)
T 3mfy_A 483 ALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVL 527 (588)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHHH
Confidence 69999999999999996 79999988877 999999887764
No 24
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=5.5e-84 Score=739.34 Aligned_cols=416 Identities=22% Similarity=0.303 Sum_probs=373.9
Q ss_pred EEEEeecC--hhhcccccccccCC--Cc----eEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceecc
Q psy210 123 NIEYDYFD--PRCLNQTLNIKFAN--NT----VLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPV 194 (915)
Q Consensus 123 ~~~~~~~~--p~~L~~~le~~~~~--g~----~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpv 194 (915)
.++-.+.+ -..+++.+++...+ |. ...++|.+.-+ + +.+.+++++.+.+++.|++|.+||+++++|+
T Consensus 13 vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~--~---~~v~~~~~~~t~gl~~G~~V~~tg~~~~vpv 87 (473)
T 1sky_E 13 VVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLG--D---DTVRTIAMASTDGLIRGMEVIDTGAPISVPV 87 (473)
T ss_dssp EEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEE--T---TEEEEEESSCCTTCCTTCEEEEEEEECEEEC
T ss_pred EEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEec--C---CcEEEEEecCccCCCCCCEEEEcCCcceeec
Confidence 44445542 23577777776422 32 35567777333 1 2347789999999999999999999999999
Q ss_pred ccccceeEeCCCceeecCCCccccc-ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHH
Q psy210 195 GFELLGRIVNSKGEFIDNKKKFLIK-NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTI 273 (915)
Q Consensus 195 g~~lLGrviD~lG~PiD~~~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l 273 (915)
|+++||||+|++|+|||+++++... .+||++..+|++++|.++++||+||||+||.|+|+++|||++|||++|+|||+|
T Consensus 88 g~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 88 GQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp SGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSSSCHHHH
T ss_pred cccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCCCCccHH
Confidence 9999999999999999999988876 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-CCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHh-cCCcE
Q psy210 274 AIDTIINQK-NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD-LGQDC 351 (915)
Q Consensus 274 ~l~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~-~g~~V 351 (915)
+...+.+++ +...+|||++||+|.+|+.+|++++++.++++||++|++++++||..|++++++++++||||++ +|+||
T Consensus 168 ~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~V 247 (473)
T 1sky_E 168 IQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDG 247 (473)
T ss_dssp HHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 544444443 2334589999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred EEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCC
Q psy210 352 LIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVT 431 (915)
Q Consensus 352 lv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~ 431 (915)
|+++|||||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||++|+|++|+||++
T Consensus 248 Ll~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~~-------------~~GSIT~i~tv~~~~dD~~ 314 (473)
T 1sky_E 248 LLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITST-------------AKGSITSIQAIYVPADDYT 314 (473)
T ss_dssp EEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSCB-------------SSCEEEEEEECCCSTTCSS
T ss_pred EEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcCC-------------CCCceEEEEEEEecCCCCC
Confidence 999999999999999999999999999999999999999999999863 2799999999999999999
Q ss_pred CccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccc-cccHHHHHHHHHHHHHHHhhHHHHhhhhc-c-CCCCH
Q psy210 432 SFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGA-AQYKIVKKLSGDIRIMLAQYRELESFSKF-S-SDLDI 508 (915)
Q Consensus 432 ~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~-~~~~~~~~~a~~lr~~la~~~e~e~l~~l-G-~~ld~ 508 (915)
|||||++++|+||||+|||+||++||||||||+.|+||+|+. ...++|+++++++|+.|++|+|+++++++ | +++++
T Consensus 315 dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~~~~~~~~~a~~lr~~la~y~e~~~li~i~g~~~ls~ 394 (473)
T 1sky_E 315 DPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSD 394 (473)
T ss_dssp SHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCTT
T ss_pred CcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhcCCHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccCCH
Confidence 999999999999999999999999999999999999999966 45699999999999999999999999886 6 48999
Q ss_pred HHHHHHHhHHHHHHHhhcCCC----------CCccHHHHHHHHHHHhcccccccchhh
Q psy210 509 VTKTQLYNGEKISLLMKQKPH----------ENYSIVELIIILLIIKNRFFFKIPIKQ 556 (915)
Q Consensus 509 ~~~~~L~~~~~i~~fL~Q~~~----------e~~s~ee~l~~L~ai~~G~Ld~vp~~e 556 (915)
+++++++++++|++||+|+.+ +..++++++..++.+..|-++.+|.+.
T Consensus 395 ~d~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~~~~~~~~~~~ 452 (473)
T 1sky_E 395 EDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDR 452 (473)
T ss_dssp HHHHHHHHHHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTTTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhcccccCCCHHH
Confidence 999999999999999999965 678999999999999889999888654
No 25
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=7.4e-85 Score=746.51 Aligned_cols=337 Identities=63% Similarity=1.033 Sum_probs=328.5
Q ss_pred hhhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCC-CCCccCCCCCCc
Q psy210 578 SINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSK-KKSPIHTLPPKF 656 (915)
Q Consensus 578 ~i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~-~~~pi~~~~p~~ 656 (915)
.+.||+.+++++.+++++|+++.||++|++|++||+++++|||+++||||+|++|+|+|+.+++... ++||++..+|++
T Consensus 46 ~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~ 125 (473)
T 1sky_E 46 LTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKF 125 (473)
T ss_dssp EEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEECEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCG
T ss_pred eEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCCcceeeccccceeeEEeecCCccCcccccCCCceeecccccCcch
Confidence 5788988899999999999999999999999999999999999999999999999999999888776 789999999999
Q ss_pred cccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhc
Q psy210 657 SNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736 (915)
Q Consensus 657 ~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~ 736 (915)
++|.+++++++||||+||.|+|++||||++|||++|+|||+|+.+++++++.++.+++||++||||.+|+++|++++.+.
T Consensus 126 ~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~ 205 (473)
T 1sky_E 126 EELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDS 205 (473)
T ss_dssp GGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHT
T ss_pred hhhcccCccccccchHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999877789999999999999999999999999
Q ss_pred CccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHH-CCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHH
Q psy210 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815 (915)
Q Consensus 737 ~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~-~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l 815 (915)
++|+||++|++++|+||..|++++++++++||||+| +|+|||+++||+||||+|+||||+++||+|+++||||++|++|
T Consensus 206 ~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l 285 (473)
T 1sky_E 206 GVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEM 285 (473)
T ss_dssp SGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHH
T ss_pred CCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHH
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHH
Q psy210 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895 (915)
Q Consensus 816 ~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~ 895 (915)
++||||+|+.++||||+++||++|+||++|||||++++||||||+|||+||++||||||||+.|+||+|++.+++++|++
T Consensus 286 ~~l~ERa~~~~~GSIT~i~tv~~~~dD~~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~~~~~~~~ 365 (473)
T 1sky_E 286 GQLQERITSTAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGEEHYQ 365 (473)
T ss_dssp HHHHTTSSCBSSCEEEEEEECCCSTTCSSSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCceEEEEEEEecCCCCCCcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhcCCHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999977788999999
Q ss_pred HHHHHHHHHHccHhhhhcc
Q psy210 896 VANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 896 ~~~~~r~~l~~~~e~~~~~ 914 (915)
+++++|++|++|+|+++|.
T Consensus 366 ~a~~lr~~la~y~e~~~li 384 (473)
T 1sky_E 366 VARKVQQTLERYKELQDII 384 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999963
No 26
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=3.2e-85 Score=751.35 Aligned_cols=332 Identities=26% Similarity=0.407 Sum_probs=306.9
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCC----CC----------CCCC
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNK----GE----------INSK 644 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~----~~----------~~~~ 644 (915)
..+| ..++++.+.+++|+++.||++|++|++||++++||+|+++||||+|++|+|||+. ++ +...
T Consensus 36 ~gEV-i~~~~d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGrV~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~ 114 (578)
T 3gqb_A 36 VGEI-IRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTGIYITRGVVVHALDRE 114 (578)
T ss_dssp EEEE-EEEETTEEEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTCEECTTSCBHHHHHHHHCSBCCTTCCCCSSCSS
T ss_pred EEEE-EEEcCCcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhhhhCcCCCcccccccccCccccccccCCCcCcc
Confidence 3444 6899999999999999999999999999999999999999999999999999986 21 1111
Q ss_pred ----------------------------------------------------------------------CCCccCCCCC
Q psy210 645 ----------------------------------------------------------------------KKSPIHTLPP 654 (915)
Q Consensus 645 ----------------------------------------------------------------------~~~pi~~~~p 654 (915)
++||++.+ +
T Consensus 115 ~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i~~~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~-~ 193 (578)
T 3gqb_A 115 KKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRA-R 193 (578)
T ss_dssp SCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEECCSEEECTTSCSEEETTCCEECSCEEEETTSC-C
T ss_pred cccccccccccCccccccceeeeecccccceecccCCCcCceeEEeccCCcccccceeEEeecCccccccccccccCC-C
Confidence 23444433 4
Q ss_pred CccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhh
Q psy210 655 KFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMK 734 (915)
Q Consensus 655 ~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~ 734 (915)
++.+|.+++++++||||+||+|+|||||||++|||++|+|||+|+++|+++. +.+++||++||||++|++||+++|+
T Consensus 194 p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~---~~~v~V~~~iGER~~Ev~e~~~~~~ 270 (578)
T 3gqb_A 194 PVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWS---NADVVVYVGSGERGNEMTDVLVEFP 270 (578)
T ss_dssp CCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHHHHTTGG
T ss_pred ChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999874 4689999999999999999999987
Q ss_pred h-------cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCC
Q psy210 735 E-------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY 807 (915)
Q Consensus 735 ~-------~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gy 807 (915)
+ +++|+||++|++|||+||.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++||+|+++||
T Consensus 271 el~d~~~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GY 350 (578)
T 3gqb_A 271 ELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGY 350 (578)
T ss_dssp GCBCTTTSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSS
T ss_pred hhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHhccCCCccccC
Confidence 6 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhcC-----CCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCccc
Q psy210 808 QPTLAEEMGKLQERISS-----TKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSK 882 (915)
Q Consensus 808 p~~l~~~l~~l~ERag~-----~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR 882 (915)
|||+|++|++||||||+ .++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||
T Consensus 351 p~~l~s~l~~l~ERAg~~~~~~~~~GSIT~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR 430 (578)
T 3gqb_A 351 PPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSL 430 (578)
T ss_dssp CTTHHHHHHHHHTTCEEEECTTSCEEEEEEEEECCCTTTCTTSHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEES
T ss_pred CchhhhHHHHHHHhhcCcccCCCCCcceEEEEEEEcCCCCCCCcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhh
Confidence 99999999999999986 3689999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC------CCCCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 883 QLDP------YIVGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 883 ~~~~------~~~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
+|+. .+++++|++++++++++|++|+|+++|++
T Consensus 431 ~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~ 469 (578)
T 3gqb_A 431 FTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQ 469 (578)
T ss_dssp SHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred ccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9962 35789999999999999999999999874
No 27
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=3.6e-85 Score=753.61 Aligned_cols=331 Identities=25% Similarity=0.404 Sum_probs=306.1
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCC----C-----------CCCC
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNK----G-----------EINS 643 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~----~-----------~~~~ 643 (915)
..|| ..++++.+.+++|+++.||++|++|++||++++||+|+++||||+|++|+|||+. + ++..
T Consensus 43 ~gEV-i~~~~d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~ 121 (600)
T 3vr4_A 43 IGEI-IEMRQDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDH 121 (600)
T ss_dssp EEEE-EEEETTEEEEEESSCCTTCCTTCEEEECSSSSEEEESTTCTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCS
T ss_pred EEEE-EEEcCCcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHHHHhhhhCcCCCcccccccccCccccccCCcCCCCCc
Confidence 3444 6899999999999999999999999999999999999999999999999999986 3 1211
Q ss_pred C-------------------------------------------------------------------------CCCccC
Q psy210 644 K-------------------------------------------------------------------------KKSPIH 650 (915)
Q Consensus 644 ~-------------------------------------------------------------------------~~~pi~ 650 (915)
. ++||++
T Consensus 122 ~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~ 201 (600)
T 3vr4_A 122 EKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVR 201 (600)
T ss_dssp SCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEECCEEECTTSCCEEEEETTEEEEECSCEEEETT
T ss_pred ccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEecCCcceeceeEEEEeccCCccccccccccccc
Confidence 1 234443
Q ss_pred CCCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHH
Q psy210 651 TLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFY 730 (915)
Q Consensus 651 ~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~ 730 (915)
. ||+..+|.+++++|+||||+||+|+|||||||++|||++|+|||+|+++|+++. +.+++||++||||++|++||+
T Consensus 202 ~-~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~---~~~v~V~~~iGER~~Ev~e~~ 277 (600)
T 3vr4_A 202 R-GRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS---DVDLVVYVGCGERGNEMTDVV 277 (600)
T ss_dssp S-CCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHHHH
T ss_pred C-CCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHH
Confidence 3 455678999999999999999999999999999999999999999999999873 468999999999999999999
Q ss_pred HHhhh-------cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCC
Q psy210 731 HEMKE-------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPS 803 (915)
Q Consensus 731 ~~~~~-------~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~ 803 (915)
++|++ +++|+||++|++|||+||.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++||+|+
T Consensus 278 ~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~ 357 (600)
T 3vr4_A 278 NEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPG 357 (600)
T ss_dssp HHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCBC
T ss_pred HHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhccCCCCc
Confidence 99876 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHhcC-------CCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccC
Q psy210 804 AVGYQPTLAEEMGKLQERISS-------TKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDP 876 (915)
Q Consensus 804 ~~gyp~~l~~~l~~l~ERag~-------~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv 876 (915)
++|||||+|++|++||||||+ .++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||
T Consensus 358 ~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~ 437 (600)
T 3vr4_A 358 DEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINW 437 (600)
T ss_dssp GGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEECCSSSCTTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCT
T ss_pred cccCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEEECCCCCCCCcchhhhhhhccEEEEEhhhHHhCCCCCccCc
Confidence 999999999999999999985 3689999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCC------CCCCHHHHHHHHHHHHHHHccHhhhhcc
Q psy210 877 LESYSKQLDP------YIVGEEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 877 ~~S~SR~~~~------~~~~~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
+.|+||+|+. .+++++|++++++++++|++|+|+++|+
T Consensus 438 l~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~la~~~el~~ii 481 (600)
T 3vr4_A 438 IQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIV 481 (600)
T ss_dssp TTCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999962 3468999999999999999999999986
No 28
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=1.2e-85 Score=754.50 Aligned_cols=330 Identities=27% Similarity=0.397 Sum_probs=269.4
Q ss_pred hhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCC--------------CC---
Q psy210 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI--------------NS--- 643 (915)
Q Consensus 581 ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~--------------~~--- 643 (915)
..+..|+++.+.+++|+++.||++|++|++||++++|++|++|||||+|++|+|||+.++. ..
T Consensus 38 geVi~l~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gLLGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~ 117 (588)
T 3mfy_A 38 GEIIRLEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKK 117 (588)
T ss_dssp -----------------------CCCCCSSSSSCCEEEESTTCTTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCC
T ss_pred EEEEEecCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCHHHHhhccCCCCCcccCcccccccccccccccCccccccc
Confidence 3446999999999999999999999999999999999999999999999999999987431 10
Q ss_pred ------------------------------------------------------------------------CCCCccCC
Q psy210 644 ------------------------------------------------------------------------KKKSPIHT 651 (915)
Q Consensus 644 ------------------------------------------------------------------------~~~~pi~~ 651 (915)
.++||++.
T Consensus 118 w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~ 197 (588)
T 3mfy_A 118 WHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRV 197 (588)
T ss_dssp EEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTS
T ss_pred cccccccccCcccccCceEEEEecccceeeeeecCCCCCceEEEeccCCcccccceEEEEecCCCccccccccccccccC
Confidence 12345543
Q ss_pred CCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHH
Q psy210 652 LPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYH 731 (915)
Q Consensus 652 ~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~ 731 (915)
|+++++|.++++|++||||+||+|+|||||||++|||++|+|||+|+++|+++. +.+++||++||||++|++||++
T Consensus 198 -~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~---~~~~~V~~~iGER~~Ev~e~~~ 273 (588)
T 3mfy_A 198 -KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS---DAQVVIYIGCGERGNEMTDVLE 273 (588)
T ss_dssp -CCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS---SCSEEEEEECCSSSSHHHHHHH
T ss_pred -CCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999998763 4689999999999999999999
Q ss_pred Hhhh-------cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCC
Q psy210 732 EMKE-------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSA 804 (915)
Q Consensus 732 ~~~~-------~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~ 804 (915)
+|++ +++|+||++|++|||+||.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++||+|++
T Consensus 274 ~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~ 353 (588)
T 3mfy_A 274 EFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGE 353 (588)
T ss_dssp HTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTCCCCC-------------
T ss_pred HHHHhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHHHHHHHHHHHhccCCCcc
Confidence 9876 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHhcC-------CCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCC
Q psy210 805 VGYQPTLAEEMGKLQERISS-------TKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPL 877 (915)
Q Consensus 805 ~gyp~~l~~~l~~l~ERag~-------~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~ 877 (915)
+|||||++++|++||||||+ .++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||+
T Consensus 354 ~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId~l 433 (588)
T 3mfy_A 354 EGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433 (588)
T ss_dssp ---CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEECCCTTSCSSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBCTT
T ss_pred ccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEEEECCCCCCCCcchHHHHHhccCeeecCHHHHhCCCCCCcCcc
Confidence 99999999999999999985 35899999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCC------CCCCHHHHHHHHHHHHHHHccHhhhhcc
Q psy210 878 ESYSKQLDP------YIVGEEHYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 878 ~S~SR~~~~------~~~~~~~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
.|+||+|++ .+++++|++++++++++|++|+|+++|+
T Consensus 434 ~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~~el~~ii 476 (588)
T 3mfy_A 434 TSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIV 476 (588)
T ss_dssp TCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999964 2478999999999999999999999986
No 29
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-75 Score=645.58 Aligned_cols=361 Identities=18% Similarity=0.218 Sum_probs=314.3
Q ss_pred HHhHHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhhhhhhccccceeee
Q psy210 514 LYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKVQQQIGENIVRT 593 (915)
Q Consensus 514 L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ev~~~l~~~~v~l 593 (915)
+++.+.|.++|+......-. ....|+|+.++. =.+|||..+.+++....+++ ++.++++.
T Consensus 36 ~~k~~l~~~~~~~~~~~~~~---------~~~~g~le~~~~---------g~gflr~~~~~y~~~~~d~y--vs~~~ir~ 95 (427)
T 3l0o_A 36 MRKRDLIFAILKAQTESTGY---------FFGEGVLEIHPE---------GFGFLRRIEDNLLPSNDDIY--ISPSQIRK 95 (427)
T ss_dssp SCHHHHHHHHHHGGGSSSSE---------EEEEEEEEECTT---------SCEEEECGGGTTCCCSSCEE--ECHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhcCc---------eeEEEEEEEcCC---------CceEeeCCccCCCCCCCCee--eCHHHHHh
Confidence 33556666666654322211 113477766542 23577777778888888888 88888886
Q ss_pred ccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCC-Ccccccccc-ccccccce
Q psy210 594 IAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPP-KFSNQIFNN-NILETGIK 671 (915)
Q Consensus 594 ~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p-~~~~r~~~~-e~l~TGir 671 (915)
+ +|+.||.|....++.+-.-...-|+||.+++|++.+. ...+.+++..+| +|.+|..+. ++++||+|
T Consensus 96 ~------~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~-----~~~r~~fe~l~Pi~P~~R~~le~e~~~tGir 164 (427)
T 3l0o_A 96 F------NLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEA-----VNDRVNFDNLTPDYPRERFILETDPKIYSTR 164 (427)
T ss_dssp T------TCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC---------CCCCGGGSCEECCCSBCCCCCSTTCHHHH
T ss_pred c------CCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHH-----hccccccccCCCCCchhhccccccchhccch
Confidence 5 7999999999888877665566789999999988764 235566766655 788899998 99999999
Q ss_pred eeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcE-EEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCC
Q psy210 672 VIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC-SVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMN 750 (915)
Q Consensus 672 ~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~-~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d 750 (915)
+||+|+|||||||++||||+|+|||+|+++|++++.++|+++ |||++||||++||++|+++++ .+||++|+|
T Consensus 165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~-------G~VV~atad 237 (427)
T 3l0o_A 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTN-------AIVIAAPFD 237 (427)
T ss_dssp HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCC-------SEEEECCTT
T ss_pred hhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhC-------CeEEEECCC
Confidence 999999999999999999999999999999999988878884 689999999999999999885 289999999
Q ss_pred CChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcC-CCCCc
Q psy210 751 EPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISS-TKNGT 829 (915)
Q Consensus 751 ~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~-~~~GS 829 (915)
+||.+|+++|++|+++||||||+|+|||+++||+||||+|+||||+++||+|+ +||||++++.+++|+|||++ +++||
T Consensus 238 ep~~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie~~GS 316 (427)
T 3l0o_A 238 MPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTREGGS 316 (427)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEESSSCE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999 59999999999999999997 47999
Q ss_pred eeEEEEEEec-CCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHHHHHHccH
Q psy210 830 ITSVQAIYVP-ADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYK 908 (915)
Q Consensus 830 iT~i~~v~~~-~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r~~l~~~~ 908 (915)
||+|+||+++ +||++|||+|++++++||||+|||+||++||||||||+.|+||+| +.+++++|+++++++|++|++|+
T Consensus 317 IT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~-~~l~~~~h~~~a~~lr~~la~y~ 395 (427)
T 3l0o_A 317 LTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRRE-ELLLDEETLKKVWLLRRMLSAMT 395 (427)
T ss_dssp EEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTG-GGTSCHHHHHHHHHHHHHHTTSC
T ss_pred eeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCCCCCccCccccccccc-cccCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999 899999999999999999999999999999999999999999998 58899999999999999999999
Q ss_pred hhhhcc
Q psy210 909 ELKDTS 914 (915)
Q Consensus 909 e~~~~~ 914 (915)
+++++.
T Consensus 396 e~e~l~ 401 (427)
T 3l0o_A 396 EEEGLT 401 (427)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 999875
No 30
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=4e-73 Score=629.36 Aligned_cols=374 Identities=16% Similarity=0.235 Sum_probs=301.9
Q ss_pred hccCCCCHHHHHHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhhhcccccchhh
Q psy210 501 KFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISIN 580 (915)
Q Consensus 501 ~lG~~ld~~~~~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai~~G~Ld~vp~~ev~~f~~~Li~~Lr~~~~~lv~~i~ 580 (915)
.++.++.-+.-..+++.+.|.++|+......-. ....|+|+.++. =.+|||....+++....
T Consensus 19 ~~a~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~---------~~~~g~le~~~~---------g~gflr~~~~~~~~~~~ 80 (422)
T 3ice_A 19 TLGENMGLENLARMRKQDIIFAILKQHAKSGED---------IFGDGVLEILQD---------GFGFLRSADSSYLAGPD 80 (422)
T ss_dssp --------------CHHHHHHHHHHHHHHTTCC---------CEEEEEEEECTT---------SCEEEECGGGTTCCCTT
T ss_pred HHHHHcCCCCccccCHHHHHHHHHHHHHhcCCc---------eEEEEEEEEcCC---------CceEeeCCCcCCCCCCC
Confidence 333344444444456666666666542111100 123477766542 13577877778888888
Q ss_pred hhhhccccceeeeccccCccCcccCCeEEeCCCcccccCCCcccceEEcccCccCCCCCCCCCCCCCccCCCCCCcc-cc
Q psy210 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS-NQ 659 (915)
Q Consensus 581 ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~~~p~~~-~r 659 (915)
+++ ++.++++.+ +|+.||.|...-++.+-.-...-|-+|-..+|.+++ ....+..++...|.++ +|
T Consensus 81 d~y--vs~~~ir~~------~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~~pe-----~~~~ri~Fe~ltp~yP~er 147 (422)
T 3ice_A 81 DIY--VSPSQIRRF------NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE-----NARNKILFENLTPLHANSR 147 (422)
T ss_dssp CEE--BCHHHHHHH------TCCTTCEEEEEEECCCSSCCSEEEEEEEEESSSCHH-----HHTTSCCTTTSCEESCCSB
T ss_pred Cee--eCHHHHHhc------CCCCCCEEEEEEeCCCccchHHHHhccCcccCCChh-----hhcCCceeccccccCCCCc
Confidence 888 888888866 799999999877665533332233355555554432 1223445555544333 45
Q ss_pred cccc----ccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcE-EEEEEecCCCchHHHHHHHhh
Q psy210 660 IFNN----NILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC-SVFIGVGERSREGNDFYHEMK 734 (915)
Q Consensus 660 ~~~~----e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~-~v~~~iGer~~ev~e~~~~~~ 734 (915)
..+. ++++||||+||+++|++||||++|||++|+|||+|+++|++++.++|+++ |||++||||++||++|++++
T Consensus 148 ~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~- 226 (422)
T 3ice_A 148 LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV- 226 (422)
T ss_dssp CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC-
T ss_pred cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh-
Confidence 5555 69999999999999999999999999999999999999999998888885 88999999999999999887
Q ss_pred hcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHH
Q psy210 735 ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814 (915)
Q Consensus 735 ~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~ 814 (915)
+++||++|+|+||.+|++++++|+++||||||+|+|||+++||+||||+||||+|+++||+|+ +||||++|++
T Consensus 227 ------~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps-~Gyp~~~~~~ 299 (422)
T 3ice_A 227 ------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHR 299 (422)
T ss_dssp ------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCS-SSCBHHHHHH
T ss_pred ------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCC-CCcCHHHHhh
Confidence 579999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHhcC-CCCCceeEEEEEEec-CCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHH
Q psy210 815 MGKLQERISS-TKNGTITSVQAIYVP-ADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEE 892 (915)
Q Consensus 815 l~~l~ERag~-~~~GSiT~i~~v~~~-~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~ 892 (915)
+++|+|||++ .++||||+|+||++| +||++|||++++++|+||||+|||+||++||||||||+.|+||+| +.+++++
T Consensus 300 ~~rl~erA~~~~~~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~giyPAIDvl~S~SR~~-~~~~~~~ 378 (422)
T 3ice_A 300 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE-ELLTTQE 378 (422)
T ss_dssp HHHHHTTCEEESSSCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHTTCSSCBCTTTCEESSG-GGSSCHH
T ss_pred hHHHHHhccccCCCcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhcCCCCccCccccccccc-hhhCCHH
Confidence 9999999998 479999999999999 899999999999999999999999999999999999999999999 5889999
Q ss_pred HHHHHHHHHHHHHccHhhhhcc
Q psy210 893 HYKVANEVKFYLQKYKELKDTS 914 (915)
Q Consensus 893 ~~~~~~~~r~~l~~~~e~~~~~ 914 (915)
|+++++++|++|++|+|++++.
T Consensus 379 ~~~~a~~lr~~la~~~e~~~~~ 400 (422)
T 3ice_A 379 ELQKMWILRKIIHPMGEIDAME 400 (422)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHH
Confidence 9999999999999999999874
No 31
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=4.1e-70 Score=603.77 Aligned_cols=305 Identities=20% Similarity=0.215 Sum_probs=276.9
Q ss_pred ccccccCCCcccccCccceeccccccceeEeCCCceeecCCCcccccccccccc-cCCCCCcccccC-ccccccceeeec
Q psy210 173 DLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEK-IAPGIMDRESVN-EPLLTGIKSIDS 250 (915)
Q Consensus 173 ~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~-~~~~~~~R~~~~-~~l~TGi~aiD~ 250 (915)
-.-+++.||.|.+..++++-......|++|.+..|.+.+. ...+...+. .|++|.+|..++ +|++||+|+||+
T Consensus 94 r~~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~-----~~~r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~ 168 (427)
T 3l0o_A 94 RKFNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEA-----VNDRVNFDNLTPDYPRERFILETDPKIYSTRLIDL 168 (427)
T ss_dssp HHTTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC---------CCCCGGGSCEECCCSBCCCCCSTTCHHHHHHHH
T ss_pred HhcCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHH-----hccccccccCCCCCchhhccccccchhccchhhhh
Confidence 3457889999998777766655566888998888876654 222333444 456899999999 999999999999
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhh---cCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCH
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQ---KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSA 327 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~---~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~ 327 (915)
|+|||||||++|||++|+|||+| +++|+++ ++.++.|||++||||++||++|+++++ | ++|++++|+||
T Consensus 169 l~PigrGQR~lIfg~~g~GKT~L-l~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~--G-----~VV~atadep~ 240 (427)
T 3l0o_A 169 FAPIGKGQRGMIVAPPKAGKTTI-LKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTN--A-----IVIAAPFDMPP 240 (427)
T ss_dssp HSCCBTTCEEEEEECTTCCHHHH-HHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCC--S-----EEEECCTTSCH
T ss_pred cccccCCceEEEecCCCCChhHH-HHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhC--C-----eEEEECCCCCH
Confidence 99999999999999999999999 5888876 468999999999999999999999986 2 89999999999
Q ss_pred HHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchh
Q psy210 328 AEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407 (915)
Q Consensus 328 ~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~ 407 (915)
.+|+++|++|+|+||||||+|+|||+++|||||||+|+||||+++||+|+ +||||++|+.+++++|||++++.
T Consensus 241 ~~r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie~------ 313 (427)
T 3l0o_A 241 DKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTRE------ 313 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEESS------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccCC------
Confidence 99999999999999999999999999999999999999999999999999 59999999999999999999853
Q ss_pred hhccCCCCccceeEEEEec-CCCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHH
Q psy210 408 KIFNKNNGTLTAFPIIETL-EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486 (915)
Q Consensus 408 ~~~~~~~GSiT~~~~v~~~-~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~l 486 (915)
+||||+++||+++ +||++|||||++++|+||||+|||+||++||||||||+.|+||+++.++.++|.++++++
T Consensus 314 ------~GSIT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~~~l~~~~h~~~a~~l 387 (427)
T 3l0o_A 314 ------GGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELLLDEETLKKVWLL 387 (427)
T ss_dssp ------SCEEEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTGGGTSCHHHHHHHHHH
T ss_pred ------CcceeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCCCCCccCccccccccccccCCHHHHHHHHHH
Confidence 7999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHhhhhcc
Q psy210 487 RIMLAQYRELESFSKFS 503 (915)
Q Consensus 487 r~~la~~~e~e~l~~lG 503 (915)
|+.|++|++++++..+.
T Consensus 388 r~~la~y~e~e~l~~ll 404 (427)
T 3l0o_A 388 RRMLSAMTEEEGLTLIL 404 (427)
T ss_dssp HHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHH
Confidence 99999999999998764
No 32
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=3.3e-66 Score=574.13 Aligned_cols=256 Identities=16% Similarity=0.191 Sum_probs=241.6
Q ss_pred CCCCCcccccC----ccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh---hcCCCeEEEEEeeccchhhH
Q psy210 228 APGIMDRESVN----EPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN---QKNKNVICIYVCIGQKISSL 300 (915)
Q Consensus 228 ~~~~~~R~~~~----~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~---~~~~~~~~V~~~iGer~~ev 300 (915)
+..|.+|..++ +|++||||+||.++|+++|||++|||++|+|||+| +.+|++ +++.++.|||++||||++||
T Consensus 141 p~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL-l~~Iar~i~~~~~~v~~I~~lIGER~~Ev 219 (422)
T 3ice_A 141 PLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTML-LQNIAQSIAYNHPDCVLMVLLIDERPEEV 219 (422)
T ss_dssp EESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH-HHHHHHHHHHHCTTSEEEEEEESSCHHHH
T ss_pred ccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHH-HHHHHHHHhhcCCCeeEEEEEecCChHHH
Confidence 34566777777 89999999999999999999999999999999999 455554 56789999999999999999
Q ss_pred HHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHHHHHHhhcCCCCCCCc
Q psy210 301 INVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREA 380 (915)
Q Consensus 301 ~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~g 380 (915)
++|++.+ ++++|++++|+||.+|++++++|+++|||||++|+||||++|||||||+||||+|+++||||+ +|
T Consensus 220 ~~~~~~~-------~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps-~G 291 (422)
T 3ice_A 220 TEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GG 291 (422)
T ss_dssp HHHHTTC-------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCS-SS
T ss_pred HHHHHHh-------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCC-CC
Confidence 9999888 379999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred CCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEec-CCCCCCccccccccccCcEEEeehhhhhcCCCC
Q psy210 381 FPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL-EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRP 459 (915)
Q Consensus 381 yp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~-~~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~P 459 (915)
||+++|+.+++|+||||+++. +||||++++|++| +||++|||||++++|+||||+|||+||++||||
T Consensus 292 yp~~~~~~~~rl~erA~~~~~------------~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~giyP 359 (422)
T 3ice_A 292 VDANALHRPKRFFGAARNVEE------------GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 359 (422)
T ss_dssp CBHHHHHHHHHHHTTCEEESS------------SCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHTTCSS
T ss_pred cCHHHHhhhHHHHHhccccCC------------CcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhcCCCC
Confidence 999999999999999999753 7999999999999 999999999999999999999999999999999
Q ss_pred eeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC
Q psy210 460 AINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS 504 (915)
Q Consensus 460 aId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~ 504 (915)
||||+.|+||++..++.++|.++++++|+.|++|++++++..+..
T Consensus 360 AIDvl~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~~~~~~ll~ 404 (422)
T 3ice_A 360 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLIN 404 (422)
T ss_dssp CBCTTTCEESSGGGSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccCccccccccchhhCCHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999987653
No 33
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=5.9e-61 Score=537.02 Aligned_cols=340 Identities=27% Similarity=0.401 Sum_probs=323.7
Q ss_pred cceeccccccceeEeCCCceeecCCC-cccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCC
Q psy210 189 IFEIPVGFELLGRIVNSKGEFIDNKK-KFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQ 267 (915)
Q Consensus 189 ~~~vpvg~~lLGrviD~lG~PiD~~~-~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g 267 (915)
++.+|+|+++||||+|++|+|||+++ ++....++|++.++|++++|..+++++.||+++||.++|+++||+++|+|++|
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 67899999999999999999999998 88877889999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhc
Q psy210 268 TGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347 (915)
Q Consensus 268 ~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~ 347 (915)
+||||| +.+|+++...+. .++.++|++.+|+.+++..+ +.+.+++++++++++++|+..|+.+++.++++||||+++
T Consensus 82 aGKTTL-l~~I~g~~~~~~-g~i~~~G~~~~ev~~~i~~~-~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~ 158 (347)
T 2obl_A 82 VGKSTL-LGMICNGASADI-IVLALIGERGREVNEFLALL-PQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQ 158 (347)
T ss_dssp SSHHHH-HHHHHHHSCCSE-EEEEEESCCHHHHHHHHTTS-CHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHH-HHHHhcCCCCCE-EEEEEecccHHHHHHHHHhh-hhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999 899999988886 67889999999999988773 334678999999999999999999999999999999999
Q ss_pred CCcEEEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecC
Q psy210 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLE 427 (915)
Q Consensus 348 g~~Vlv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~ 427 (915)
|+||++++|++++|+.++|++++++++||.+.|||+++|+.+.+|+||+++.+ +||||++++|++++
T Consensus 159 ~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~-------------~GsiT~~~tVl~~t 225 (347)
T 2obl_A 159 GKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAP-------------KGSITAIYTVLLES 225 (347)
T ss_dssp TCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECS-------------SSEEEEEEEEECCS
T ss_pred cccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCC-------------CCCeeeEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999988621 69999999999999
Q ss_pred CCCCCccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---
Q psy210 428 GDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS--- 504 (915)
Q Consensus 428 ~d~~~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~--- 504 (915)
+|+++|++|++..++||||+||+++++.++|||||++.|+||++..++.++|++++.++|+.|++|+|+++++++|.
T Consensus 226 hdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 305 (347)
T 2obl_A 226 DNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNPELLIRIGEYTM 305 (347)
T ss_dssp SCCCCHHHHHHHHHCSEEEEBCHHHHTTTCSSCBCGGGCEETTHHHHSCHHHHHHHHHHHHHHHHCCCTHHHHTTTCCCC
T ss_pred CCCCChhhhheEEeeCcEEEEeCCHHHcCCCCCcCccccccccccccCCHHHHHHHHHHHHHHHccHHHHHHHHhcCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCHHHHHHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 505 DLDIVTKTQLYNGEKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 505 ~ld~~~~~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
++|++++.+++++++|++||+|+.++++++++++..+|.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~ 345 (347)
T 2obl_A 306 GQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKV 345 (347)
T ss_dssp CSCHHHHHHHHTHHHHHHHHCCCTTCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999965
No 34
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=1.7e-58 Score=531.83 Aligned_cols=403 Identities=22% Similarity=0.300 Sum_probs=369.6
Q ss_pred eEEEEeecChhhcccccccccCCCc---eEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCc-------cce
Q psy210 122 YNIEYDYFDPRCLNQTLNIKFANNT---VLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEK-------IFE 191 (915)
Q Consensus 122 ~~~~~~~~~p~~L~~~le~~~~~g~---~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~-------~~~ 191 (915)
-.++-.+. ...+++.+++...+|. .+.|+|.++++ + .+.+++|+++.+++.|+.|.+||+ ++.
T Consensus 19 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~--~----~~~~~~~~~~~gl~~g~~v~~~~~~~~~~~~~~~ 91 (438)
T 2dpy_A 19 LVLEATGL-QLPLGATCIIERQDGPETKEVESEVVGFNG--Q----RLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQ 91 (438)
T ss_dssp SSEEEESC-CCCSSCEEEEEECSTTSCEEEEEEEEECCT--T----CEEEEESSCCTTCCTTEEEEEC----------CE
T ss_pred cEEEEEeC-CCCCCCEEEEecCCCCccccEEEEEEEEcC--C----EEEEEEccCCCCCCCCCEEEECCCccccccccEE
Confidence 34445555 4578999999764554 57899999987 3 348889999999999999999999 999
Q ss_pred eccccccceeEeCCCceeecCCCcccccccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChh
Q psy210 192 IPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKT 271 (915)
Q Consensus 192 vpvg~~lLGrviD~lG~PiD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt 271 (915)
++++++++||++|.+|+|+|+.+++.+..+++++.++|++++|..++.++.||++++|.++|+++||+++|+|++|+|||
T Consensus 92 v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKS 171 (438)
T 2dpy_A 92 LPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKS 171 (438)
T ss_dssp EECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHH
T ss_pred EEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHH
Confidence 99999999999999999999998887777789998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcE
Q psy210 272 TIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDC 351 (915)
Q Consensus 272 ~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~V 351 (915)
|| +.+|+++...+. .++.++|+|++++.++.+++.+.+.+.+++.+++++++++..++.+++.+++.||||++++++|
T Consensus 172 TL-l~~Iag~~~~~~-G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v 249 (438)
T 2dpy_A 172 VL-LGMMARYTRADV-IVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHV 249 (438)
T ss_dssp HH-HHHHHHHSCCSE-EEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred HH-HHHHhcccCCCe-EEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99 899999988876 5788999999999999877665556788999999999999999999999999999999999999
Q ss_pred EEEeccchhHHHHHHHHHhhcCCCCCCCcCCCchhhhhhhHHhhhhcccccccchhhhccCCCCccceeEEEEecCCCCC
Q psy210 352 LIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVT 431 (915)
Q Consensus 352 lv~~Ddltr~a~A~reis~~~~~~p~~~gyp~~~~~~~~~l~ERag~~~~~~g~~~~~~~~~~GSiT~~~~v~~~~~d~~ 431 (915)
+.++|++++|+.+++++++++++||...|||+++++.+.+++||+++.+ | ++||||++++|+++++|++
T Consensus 250 ~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~---~--------~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 250 LLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI---H--------GGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCS---T--------TSCEEEEEEEEECSSSCSC
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhcc---C--------CCCcccceeEEEEeCCCcc
Confidence 9999999999999999999999999999999999999999999988632 1 1599999999999999999
Q ss_pred CccccccccccCcEEEeehhhhhcCCCCeeeecCCccccccccccHHHHHHHHHHHHHHHhhHHHHhhhhccC---CCCH
Q psy210 432 SFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSS---DLDI 508 (915)
Q Consensus 432 ~pi~~~~~~i~dgqi~Lsr~la~~g~~PaId~~~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~e~l~~lG~---~ld~ 508 (915)
+|++|++.++.||||++++++++.++|||||++.|+||++...+.++|.+++.++|+.|++|+++++++++|. ++|+
T Consensus 319 ~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 398 (438)
T 2dpy_A 319 DPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDP 398 (438)
T ss_dssp CHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHGGGTSSSSCCCTTSCH
T ss_pred chhhceEEEEeCcEEEEeCCHHHccCCCCcCCcccccccccccCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCCcCCCCH
Confidence 9999999999999999999999999999999999999999889999999999999999999999999999974 8999
Q ss_pred HHHHHHHhHHHHHHHhhcCCCCCccHHHHHHHHHHH
Q psy210 509 VTKTQLYNGEKISLLMKQKPHENYSIVELIIILLII 544 (915)
Q Consensus 509 ~~~~~L~~~~~i~~fL~Q~~~e~~s~ee~l~~L~ai 544 (915)
++|+++.++++|++||+|+.++++++++++..+|.+
T Consensus 399 ~~~~~i~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~ 434 (438)
T 2dpy_A 399 MLDKAITLWPQLEAFLQQGIFERADWEDSLQALDLI 434 (438)
T ss_dssp HHHHHHTTHHHHHHHHCCCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999965
No 35
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=7.3e-57 Score=503.90 Aligned_cols=297 Identities=29% Similarity=0.445 Sum_probs=281.6
Q ss_pred cccccCCCcccceEEcccCccCCCCC-CCCCCCCCccCCCCCCccccccccccccccceeeecccccccCCeeeeccCCC
Q psy210 614 PILTPVGDCTLGRILNVLGDPIDNKG-EINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAG 692 (915)
Q Consensus 614 ~~~v~vg~~lLGrV~d~~G~pid~~~-~~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g 692 (915)
++++|||+++||||+|++|+|+|+++ ++...++||++..+|++.++..+++++.||+++||.++||++||+++|+|++|
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 67899999999999999999999998 88777889999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHH
Q psy210 693 VGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN 772 (915)
Q Consensus 693 ~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~ 772 (915)
+|||||+.+|+... ++++.++.++|||++|+++++.. .+.+.+++++++++++++|+..|+.+++.++++||||++
T Consensus 82 aGKTTLl~~I~g~~---~~~~g~i~~~G~~~~ev~~~i~~-~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~ 157 (347)
T 2obl_A 82 VGKSTLLGMICNGA---SADIIVLALIGERGREVNEFLAL-LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD 157 (347)
T ss_dssp SSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHTT-SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCC---CCCEEEEEEecccHHHHHHHHHh-hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999875 36888999999999999998876 333468899999999999999999999999999999999
Q ss_pred CCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEecCCCCCCCcccccc
Q psy210 773 SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTF 852 (915)
Q Consensus 773 ~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~ 852 (915)
+|+||++++|+++||++|+||+++++++||.+.||||++++.+.+|+||+++.++||||+++||+++++|+++|++|.++
T Consensus 158 ~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~ 237 (347)
T 2obl_A 158 QGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVR 237 (347)
T ss_dssp TTCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHH
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheE
Confidence 99999999999999999999999999999999999999999999999999875679999999999999999999999999
Q ss_pred cccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCCCHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 853 THLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 853 ~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
.+.||||+||+++++.++||||||+.|+||+|+ .+++++|+++++++|++|++|+|++++.+
T Consensus 238 ~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 299 (347)
T 2obl_A 238 SILDGHIVLTRELAEENHFPAIDIGLSASRVMH-NVVTSEHLRAAAECKKLIATYKNPELLIR 299 (347)
T ss_dssp HHCSEEEEBCHHHHTTTCSSCBCGGGCEETTHH-HHSCHHHHHHHHHHHHHHHHCCCTHHHHT
T ss_pred EeeCcEEEEeCCHHHcCCCCCcCcccccccccc-ccCCHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 999999999999999999999999999999995 58999999999999999999999999864
No 36
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=2.9e-54 Score=496.68 Aligned_cols=332 Identities=28% Similarity=0.438 Sum_probs=310.3
Q ss_pred hhhhhhccccceeeeccccCccCcccCCeEEeCCC-------cccccCCCcccceEEcccCccCCCCCCCCCCCCCccCC
Q psy210 579 INKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGK-------PILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHT 651 (915)
Q Consensus 579 i~ev~~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~-------~~~v~vg~~lLGrV~d~~G~pid~~~~~~~~~~~pi~~ 651 (915)
..+|. +|+++.+++++|+++.||++|+.|..||+ ++++++|+++||||+|++|+|+|+.+++....+||++.
T Consensus 48 ~~ev~-~~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~ 126 (438)
T 2dpy_A 48 ESEVV-GFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALIT 126 (438)
T ss_dssp EEEEE-ECCTTCEEEEESSCCTTCCTTEEEEEC----------CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCC
T ss_pred EEEEE-EEcCCEEEEEEccCCCCCCCCCEEEECCCccccccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccC
Confidence 45564 79999999999999999999999999999 99999999999999999999999988887777789998
Q ss_pred CCCCccccccccccccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHH
Q psy210 652 LPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYH 731 (915)
Q Consensus 652 ~~p~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~ 731 (915)
.+|++.++..++.++.||+++||.++|+++||+++|+|++|+|||||+.+|++.. +++..++.++|+|++|++++.+
T Consensus 127 ~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~---~~~~G~i~~~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 127 PPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT---RADVIVVGLIGERGREVKDFIE 203 (438)
T ss_dssp CCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHH
T ss_pred CCCCceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc---CCCeEEEEEeceecHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999875 3678899999999999999988
Q ss_pred HhhhcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchh
Q psy210 732 EMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTL 811 (915)
Q Consensus 732 ~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l 811 (915)
++.+.+.+++++.+++++++|+..|+.+++.+++.||||++++++|+.++|+++||+.++|++++++++||.+.|||+++
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~ 283 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSV 283 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTH
T ss_pred hhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHH
Confidence 76655667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCC--CCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCccccCCCCcccccCCCCC
Q psy210 812 AEEMGKLQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIV 889 (915)
Q Consensus 812 ~~~l~~l~ERag~~--~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~PAIdv~~S~SR~~~~~~~ 889 (915)
++.+.+++||+++. ++||||+++||+++++|+++|++|+++.+.||+|++|+++++.++||||||+.|+||.++ .++
T Consensus 284 ~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~-~~~ 362 (438)
T 2dpy_A 284 FAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMT-ALI 362 (438)
T ss_dssp HHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHH-HHS
T ss_pred HHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHccCCCCcCCccccccccc-ccC
Confidence 99999999999875 469999999999999999999999999999999999999999999999999999999985 578
Q ss_pred CHHHHHHHHHHHHHHHccHhhhhccC
Q psy210 890 GEEHYKVANEVKFYLQKYKELKDTST 915 (915)
Q Consensus 890 ~~~~~~~~~~~r~~l~~~~e~~~~~~ 915 (915)
+++|+++++++|++|++|+|++++.+
T Consensus 363 ~~~~~~~~~~l~~~l~~~~~~~~~~~ 388 (438)
T 2dpy_A 363 TEQHYARVRLFKQLLSSFQRNRDLVS 388 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGTSS
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999864
No 37
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=100.00 E-value=1.9e-42 Score=410.36 Aligned_cols=244 Identities=32% Similarity=0.434 Sum_probs=195.9
Q ss_pred cccccceeeccCcccccChhhhhhcCCCCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeeeccee
Q psy210 43 NSLLNKTFLITGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFAY 122 (915)
Q Consensus 43 ~~l~~~mIig~g~~~~~si~~k~~~~~~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~r~g~ 122 (915)
..++...|-+.|||||||||||++||++|++|++||||||++++++|+|||||+|||++|++++|+|||||||+|+||||
T Consensus 289 ~~~~~g~i~~~Gprycpsie~k~~rf~dk~~h~i~lepEg~~~~~~y~~G~stslp~~~Q~~~~~~ipGle~a~~~r~Gy 368 (637)
T 2zxi_A 289 TALYGGLIKGIGPRYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAY 368 (637)
T ss_dssp -------------CCCCSHHHHHHHCTTCSCCEEEEEECCSSCCEEEEETCCCCSCHHHHHHHHTTSTTCTTCCEEECCE
T ss_pred ccccCccccccCCccCcchhhhhcccCCcccceeeeccccccCceeeecCCCCcCCHHHHHHHHhhCcCcccceEecccc
Confidence 34667778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeE
Q psy210 123 NIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRI 202 (915)
Q Consensus 123 ~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrv 202 (915)
+||||||||++|+++||+|..+|+|+|||||||+||+||++||++|+++...... . .+++.+++.++|+|.+
T Consensus 369 ~ieyd~i~p~~l~~tLe~k~~~gLf~AGqinGt~GyeEAaaqGl~AG~nAa~~~~-~-------~~~~~~~r~~ayig~l 440 (637)
T 2zxi_A 369 AIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAF-G-------KEPIYLRRDESYIGVM 440 (637)
T ss_dssp EEEEEECCGGGBCTTSBBSSSBTEEECGGGGTBCSHHHHHHHHHHHHHHHHHHHT-T-------CCCCCCCTTTCHHHHH
T ss_pred ccccceEchhhcCccccccCCCCEEEeeecCCcchHHHHHHHHHHHHHHHHHHhc-C-------CCCCCCChhheehhhH
Confidence 9999999999999999999999999999999999999999999999996644333 1 3578889999999999
Q ss_pred eCCCceeecCCCccccc--ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 203 VNSKGEFIDNKKKFLIK--NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 203 iD~lG~PiD~~~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
+|++- .++..+|| ++++.|+ +++.|++ +|..+|+|+|+ ++|++++..
T Consensus 441 iddl~----t~g~~epyrm~tsrae~---rl~lr~d---------nad~rl~~~~~--~~g~~~~~~------------- 489 (637)
T 2zxi_A 441 IDDLT----TKGVTEPYRLFTSRSEY---RLYIRQD---------NAILRLAKLGR--ELGLLSEEQ------------- 489 (637)
T ss_dssp HHHHH----HHCCSSCBCGGGCCCTT---TTTSCST---------THHHHHHHHHH--HHTSSCHHH-------------
T ss_pred HHHHh----hcCCCchhhhcccHHHH---HHHhccC---------ChhhhhHHHHH--HhCCCCHHH-------------
Confidence 99985 46666776 6888898 9999999 99999999998 345777644
Q ss_pred hcCCCeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCc
Q psy210 281 QKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQD 350 (915)
Q Consensus 281 ~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~ 350 (915)
|..+-+|.+.+.+.++.|++..+-.. + . . . ..+++..|.++ ++.+
T Consensus 490 ---------~~~~~~~~~~~~~~~~~l~~~~~~~~---~--~--~-------~-~~~~~~~~~l~-~~~~ 534 (637)
T 2zxi_A 490 ---------YKLVKELEREIEKWKEFYKSERVSVA---V--G--G-------D-TRSYSVATLMT-MNYT 534 (637)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTTCEEEEE---E--T--T-------E-EEEEEHHHHTT-TTCC
T ss_pred ---------HHHHHHHHHHHHHHHHHHhccCccCC---C--C--C-------C-CCcCCHHHHhC-CCCC
Confidence 33455677788888888876332111 0 0 0 1 24567777877 7777
No 38
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=100.00 E-value=1.6e-41 Score=403.99 Aligned_cols=217 Identities=36% Similarity=0.570 Sum_probs=179.1
Q ss_pred cccceeeccCcccccChhhhhhcCCCCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeeecceeEE
Q psy210 45 LLNKTFLITGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFAYNI 124 (915)
Q Consensus 45 l~~~mIig~g~~~~~si~~k~~~~~~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~r~g~~~ 124 (915)
+++..+-+.|||||||||||++||++|++|++||||||++++++|+|||||+|||++|++++|+|||||||+|+||||+|
T Consensus 286 ~~~g~i~~~Gprycpsie~k~~rf~~k~~~~i~lepeg~~~~~~y~~G~st~lp~~~q~~~~~~ipGle~a~i~r~Gy~i 365 (651)
T 3ces_A 286 MYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAI 365 (651)
T ss_dssp --------------CCHHHHHHHSCSSSCCEEEEEESCTTCCEEEEETCCCCSCHHHHHHHHHTSTTCTTCCEEECCEEE
T ss_pred cccccccccCCcccccccccccccCCCccceeEeccccccCCeeeecCCCCCCCHHHHHHHHhhCCCccceEEEecccee
Confidence 56667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeC
Q psy210 125 EYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVN 204 (915)
Q Consensus 125 ~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD 204 (915)
|||||||++|+++||+|..+|+|||||||||+||+||++||++|+++...... . .+++.+++.++|+|.++|
T Consensus 366 eyd~i~p~~L~~tle~k~~~gLf~AGqinGttGYeEAaaqGl~AG~nAa~~~~-~-------~~~~~~~r~~ayiG~lid 437 (651)
T 3ces_A 366 EYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSA-D-------KEGWAPARSQAYLGVLVD 437 (651)
T ss_dssp EEEEECGGGBCTTSBBSSSBTEEECSGGGTCCCHHHHHHHHHHHHHHHHHHHT-T-------CCCCCCCTTTCHHHHHHH
T ss_pred ccCccchhhcCccccccCCCCeEEEEEecCCcChHHHHHHHHHHHHHHHHHhc-C-------CCCCCCChhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999986554322 1 257888999999999999
Q ss_pred CCceeecCCCccccc--ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 205 SKGEFIDNKKKFLIK--NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 205 ~lG~PiD~~~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
++- .++..+|| ++++.|+ +++.|++ +|.-+|+|+|+ ++|++++..
T Consensus 438 dl~----t~g~~epyrm~tsrae~---rl~lr~d---------nad~rl~~~~~--~~gl~~~~~--------------- 484 (651)
T 3ces_A 438 DLC----TLGTKEPYRMFTSRAEY---RLMLRED---------NADLRLTEIGR--ELGLVDDER--------------- 484 (651)
T ss_dssp HHH----HHSSCCCGGGHHHHHTT---CSTTCGG---------GHHHHHHHHHH--HHTCCCHHH---------------
T ss_pred HHH----HhcccchHHhhhhHHHH---HHHhccc---------chhhhchHhHh--HhCCCCHHH---------------
Confidence 984 45666776 6788898 9999999 99999999998 344777644
Q ss_pred CCCeEEEEEeeccchhhHHHHHHHHhc
Q psy210 283 NKNVICIYVCIGQKISSLINVINKLKY 309 (915)
Q Consensus 283 ~~~~~~V~~~iGer~~ev~~~~~~l~~ 309 (915)
|..+-+|.+.+.+.++.|++
T Consensus 485 -------~~~~~~~~~~~~~~~~~l~~ 504 (651)
T 3ces_A 485 -------WARFNEKLENIERERQRLKS 504 (651)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHHHHHHhc
Confidence 33444567777777777765
No 39
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=100.00 E-value=5.3e-38 Score=349.87 Aligned_cols=142 Identities=30% Similarity=0.420 Sum_probs=128.0
Q ss_pred ccChhh------hhhcCCC-------------CCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeee
Q psy210 58 CPSIED------KIYKFPN-------------TKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSII 118 (915)
Q Consensus 58 ~~si~~------k~~~~~~-------------~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~ 118 (915)
|||||| |++||.+ +++|+|||||||+++++||+|||||+|||++|+++||+|||||||+|+
T Consensus 223 CpsIE~~a~rg~k~~rF~p~kp~gl~d~~~~~~p~a~v~LepE~~~~~~~y~~GfsTsLp~~~Q~~~~r~IpGLE~a~~~ 302 (443)
T 3g5s_A 223 CVPVEELARRGYQTLLFGPMKPVGLVDPRTGKEPFAVVQLRQEDKAGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIV 302 (443)
T ss_dssp CCCHHHHHHTCTTHHHHTTTCCTTCCBTTTTBCCSEEEEEEECSTTSCEEEETTCCCCBCHHHHHHHHTTSTTCTTCCEE
T ss_pred CcCHHHHhhcCCceeecCCCccccCCCcccCCccceEEEEeecCCCCCEEeCCceecCCCHHHHHHHHhcCcChhhCeee
Confidence 999999 8899953 455699999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeecC-hhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccc
Q psy210 119 RFAYNIEYDYFD-PRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFE 197 (915)
Q Consensus 119 r~g~~~~~~~~~-p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~ 197 (915)
||||+||||||| |++|+++||+|..+|+|+||||+||+||+||++||++|+++...... |+++.+++.++
T Consensus 303 r~G~~~ey~~i~sP~~L~~tle~k~~~~Lf~AGqi~G~~Gy~eAaa~Gl~AG~naa~~~~---------g~~p~~l~r~~ 373 (443)
T 3g5s_A 303 RYGVMHRNTYLNAPRLLGETLEFREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKAL---------GLPPVAPPEES 373 (443)
T ss_dssp ECCEEEEEEEECHHHHBCTTSEETTEEEEEECGGGGTBCSHHHHHHHHHHHHHHHHHHHT---------TCCCCCCCTTS
T ss_pred eCcEeecCceecChhHhChhceecCCCCEEECccccccHHHHHHHHhHHHHHHHHHHHhc---------CCCCCCCChhh
Confidence 999999999999 99999999999999999999999999999999999999986655433 44444444469
Q ss_pred cceeEeCCCce
Q psy210 198 LLGRIVNSKGE 208 (915)
Q Consensus 198 lLGrviD~lG~ 208 (915)
|+|.++|++-.
T Consensus 374 yiGvLiddl~~ 384 (443)
T 3g5s_A 374 MLGGLVRYLAT 384 (443)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHhhc
Confidence 99999999954
No 40
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=100.00 E-value=6.2e-38 Score=373.00 Aligned_cols=218 Identities=33% Similarity=0.501 Sum_probs=181.5
Q ss_pred cccceeeccCcccccChhhhhhcCCCCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhcCccceeeecceeEE
Q psy210 45 LLNKTFLITGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSIIRFAYNI 124 (915)
Q Consensus 45 l~~~mIig~g~~~~~si~~k~~~~~~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ipgl~~a~~~r~g~~~ 124 (915)
++...+-|.|||||||||||++||++|++||+||||||++++++|+|||||+|||++|++++++|||||||+|+||||+|
T Consensus 280 ~~~g~isG~G~RycPsIedki~rf~d~~~~~~~lepe~~~~~~~~~~g~st~l~~~~q~~~~~~i~gle~a~~~~~G~~~ 359 (641)
T 3cp8_A 280 LFTGKVQGVGPRYCPSIEDKISRFPDKSSHHIFLEPEGTDTVEMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAI 359 (641)
T ss_dssp TCCC---------CCCSHHHHHHCCSCSCCEEEEEESSTTCCEEEEETCCCCSCHHHHHHHHTTSTTCTTCCEEECCEEE
T ss_pred CCCCcccCcCCccCcchhhhheeccCCCcceEEEecCCCCCCceecCCccccccHHHHHHHHhcCcchhhceEecceeee
Confidence 45666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecChhhcccccccccCCCceEeeEeeccchhHHHhhcccchhhccccccccCCCcccccCccceeccccccceeEeC
Q psy210 125 EYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVN 204 (915)
Q Consensus 125 ~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~Gy~ea~a~Gv~a~i~~~~~gl~~G~~V~~tg~~~~vpvg~~lLGrviD 204 (915)
||||+||++|+++||+|..+|+|+||||+|++||+||+++|++|+.+...... . .+++.+++.++|+|.++|
T Consensus 360 ~y~~i~p~~l~~tle~k~~~gLf~AGqi~g~~Gy~eA~a~G~~AG~naa~~~~-~-------~~~~~~~r~~~y~g~l~~ 431 (641)
T 3cp8_A 360 EYDFFHPWQIRSTMETRPVENLFFAGQINGTSGYEEAAAQGLMAGINAVRKIL-G-------KELIVLGRDQAYIGVLID 431 (641)
T ss_dssp EEEEECGGGBCTTSBBSSSBTEEECSGGGTBCCHHHHHHHHHHHHHHHHHHHH-T-------CCCCCCCTTTCHHHHHHH
T ss_pred cceEECHHHcCCcccccCcCCEEEEEeecCCccHHHHHHHHHHHHHHHHHHhc-C-------CCCCCCChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999986543222 1 357888999999999999
Q ss_pred CCceeecCCCccccc--ccccccccCCCCCcccccCccccccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 205 SKGEFIDNKKKFLIK--NRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 205 ~lG~PiD~~~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
++- +++..+|| ++++.|+ +++.|++ +|...|+|+|+ ..|++.+..
T Consensus 432 ~l~----~~g~~epyrm~tsrae~---rl~lr~d---------na~~~~~~~~~--~~gl~~~~~--------------- 478 (641)
T 3cp8_A 432 DLI----TKETKEPYRMFTSSAEH---RLILRHD---------NADLRLRKIGY--DCNLVSSDD--------------- 478 (641)
T ss_dssp HHH----HCCCSSCBCTTTCCCSC---CGGGCGG---------GHHHHHHHHHH--HTTCSCHHH---------------
T ss_pred HHH----hcCccchhhhccchHhh---hhhhccc---------CcccCCCcccc--ccCCCCHHH---------------
Confidence 985 45555665 6788888 9999999 99999999998 344777644
Q ss_pred CCCeEEEEEeeccchhhHHHHHHHHhcc
Q psy210 283 NKNVICIYVCIGQKISSLINVINKLKYY 310 (915)
Q Consensus 283 ~~~~~~V~~~iGer~~ev~~~~~~l~~~ 310 (915)
|..+-+|.+.+.+.++.|++.
T Consensus 479 -------~~~~~~~~~~~~~~~~~l~~~ 499 (641)
T 3cp8_A 479 -------LHRTESIIKRVQHCLEVMKTA 499 (641)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHHHHHHHHhcC
Confidence 334445667777777777653
No 41
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=98.86 E-value=4.7e-10 Score=96.23 Aligned_cols=56 Identities=34% Similarity=0.586 Sum_probs=51.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
+++.+++++++|++++|+|+|+|+++++++++++||||+.++++++||++.+..+.
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea 57 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEA 57 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999998776554
No 42
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=98.83 E-value=3.8e-10 Score=95.98 Aligned_cols=53 Identities=28% Similarity=0.409 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 6 ~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
++++++++|++++|+|+|+|+++++++++++||||+.+++++++|++.+..+.
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea 55 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEA 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998776554
No 43
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=98.83 E-value=1.9e-10 Score=98.17 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChhh
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIED 63 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~~ 63 (915)
..++|++|++. ++++|+|+|+|+++++++++++||||+++++++++|+|.+..+.-.|-.
T Consensus 6 aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~ 65 (76)
T 4f4s_A 6 AAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFC 65 (76)
T ss_dssp HHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35788888886 8889999999999999999999999999999999999887766544433
No 44
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=98.80 E-value=1e-09 Score=95.76 Aligned_cols=55 Identities=47% Similarity=0.777 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
+..+++++++|++++|+|+|+|+++++++++++||||+.+++++++|++.+.-+.
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea 62 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999999999999999998765544
No 45
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=98.75 E-value=8.7e-10 Score=96.96 Aligned_cols=58 Identities=33% Similarity=0.519 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccCh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSI 61 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si 61 (915)
++.+++|+++|++++|+|+|+|+++++++++++||||+.++++++||++.+..+.-.|
T Consensus 9 ~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai 66 (82)
T 2xqu_A 9 ASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTI 66 (82)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998776554333
No 46
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=98.66 E-value=1.7e-09 Score=92.63 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccc
Q psy210 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYC 58 (915)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~ 58 (915)
.++.+++|+++ ++++|+|+|+|+++++++++++||||+.++++++|+++.+.-+.
T Consensus 4 ~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea 58 (72)
T 2xnd_J 4 AAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 58 (72)
T ss_dssp TTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHH
Confidence 46778999998 99999999999999999999999999999999999998765544
No 47
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=98.62 E-value=3.5e-09 Score=94.42 Aligned_cols=57 Identities=32% Similarity=0.501 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccCh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSI 61 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si 61 (915)
++.+++|+++ ++++|+|+|+|++++++++++|||||++++++++||++.+..+.-.|
T Consensus 13 ~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai 69 (89)
T 2wgm_A 13 ASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGI 69 (89)
T ss_dssp HHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHH
Confidence 5678888888 99999999999999999999999999999999999998776555433
No 48
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.20 E-value=1.4e-05 Score=105.35 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=80.1
Q ss_pred Cccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-c
Q psy210 238 NEPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-M 313 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 313 (915)
.+.+.|||..+|.++- +-+|..+++.|++|||||+||++.+.+....+-.|+|.-..+..+++.. ...|. +
T Consensus 1059 ~~~i~TGi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a-----~~~G~dl 1133 (2050)
T 3cmu_A 1059 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA-----RKLGVDI 1133 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHH-----HHTTCCT
T ss_pred cccccCCcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHH-----HHcCCCh
Confidence 4567899999999884 6679999999999999999998888876655767899999998887772 22233 3
Q ss_pred ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhH
Q psy210 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 314 ~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
++-.+ . ..+ ....+..+.+.+++.+.--+||+|+++-+
T Consensus 1134 ~~l~~-~-~pd--------~~e~~~~i~~~l~~~~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1134 DNLLC-S-QPD--------TGEQALEICDALARSGAVDVIVVDSVAAL 1171 (2050)
T ss_dssp TTCEE-E-CCS--------SHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred hHhee-e-cCc--------chHHHHHHHHHHHHhCCCCEEEECCcccc
Confidence 33222 2 211 11355677788887776668999999866
No 49
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.03 E-value=1.2e-05 Score=105.91 Aligned_cols=115 Identities=19% Similarity=0.279 Sum_probs=80.7
Q ss_pred ccCccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC
Q psy210 236 SVNEPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC 312 (915)
Q Consensus 236 ~~~~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~ 312 (915)
+..+.+.||+..+|.++. +-+|.-..|.|++|+|||++|++.+.+....+-.|+|.-..+..++.. .+.+ +.
T Consensus 10 ~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~~Ge~vlYI~tEes~~~~r--a~~l---G~ 84 (2050)
T 3cmu_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL---GV 84 (2050)
T ss_dssp --CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHT---TC
T ss_pred cCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhccCCceEEEEccCcchhhH--Hhhh---cc
Confidence 334568899999999875 557999999999999999999999888655566689999988877765 2333 22
Q ss_pred -cceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHHH
Q psy210 313 -MDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAY 365 (915)
Q Consensus 313 -~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A~ 365 (915)
+++.. +.. .+ ..+ ..+.+.+++.+.+.--+||+||++-+....
T Consensus 85 dl~~i~-v~~-p~--~~e------~ll~il~~L~~~~~~~lVVIDSISaL~~~~ 128 (2050)
T 3cmu_A 85 DIDNLL-CSQ-PD--TGE------QALEICDALARSGAVDVIVVDSVAALTPKA 128 (2050)
T ss_dssp CTTTCE-EEC-CS--SHH------HHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred Ccccce-ecC-CC--cHH------HHHHHHHHHHhccCCcEEEEcChHHhhhhc
Confidence 34433 222 11 122 234566677766656689999999876543
No 50
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.01 E-value=5.1e-06 Score=108.26 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=77.4
Q ss_pred cCccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-
Q psy210 237 VNEPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC- 312 (915)
Q Consensus 237 ~~~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~- 312 (915)
..+.+.||+..+|.++. +-+|+-+.|+|++|+|||+||++...+....+-.|+|.-..+..++.. .+.+ +.
T Consensus 11 ~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~--~~~l---g~d 85 (1706)
T 3cmw_A 11 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL---GVD 85 (1706)
T ss_dssp -CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH--HHHT---TCC
T ss_pred cCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHH--HHhh---ccC
Confidence 34568899999999975 667999999999999999999888777544455688998888776664 2333 22
Q ss_pred cceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHH
Q psy210 313 MDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 313 ~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
+++-.+ ... ...+ ....+.+.+.+.+..-+||+|+++-+...
T Consensus 86 l~~i~i-~~p---~t~e------~l~~ll~~L~~~~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 86 IDNLLC-SQP---DTGE------QALEICDALARSGAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp GGGCEE-ECC---SSHH------HHHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred ccceee-ecc---CcHH------HHHHHHHHHHhccCCCEEEEcchhhhccc
Confidence 233222 211 1122 23445566665566669999999988754
No 51
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.79 E-value=0.00015 Score=75.41 Aligned_cols=65 Identities=32% Similarity=0.407 Sum_probs=52.2
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHH
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGND 728 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e 728 (915)
+-+.||+..+|-++. +-+|+=+.|.|+||+|||+|+.+++.+...+....++|....+..+++.+
T Consensus 10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~ 76 (251)
T 2zts_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRR 76 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHH
Confidence 448999999999987 88999999999999999999999988754443445677766666665544
No 52
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=97.78 E-value=6.4e-06 Score=80.96 Aligned_cols=49 Identities=14% Similarity=0.332 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcc
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPR 56 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~ 56 (915)
.+.+++|+++|++++|+|+|+|++++++++++|||||+.++ ++++.+..
T Consensus 90 ~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~----~ii~~a~~ 138 (156)
T 2bl2_A 90 LNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATK----GIIFAAMV 138 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH----HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH----HHHHHHHH
Confidence 56799999999999999999999999999999999999988 56654443
No 53
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.34 E-value=0.00018 Score=78.77 Aligned_cols=109 Identities=14% Similarity=0.242 Sum_probs=73.6
Q ss_pred ccccccceeeecccc------ccccceeeeecCCCCChhHHHHHHHHhhcC--CCeEEEEEeeccchhhHHHHHHHHhcc
Q psy210 239 EPLLTGIKSIDSMIP------IGKGQRELIIGDRQTGKTTIAIDTIINQKN--KNVICIYVCIGQKISSLINVINKLKYY 310 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p------igrGqr~~I~g~~g~GKt~l~l~~i~~~~~--~~~~~V~~~iGer~~ev~~~~~~l~~~ 310 (915)
+.+.||+..+|.++. +.+| .+.|+|++|+|||+|+++.+++... .+-.|+|.--.+..+.. ..+.-
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~l 78 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSM 78 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHT
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHh
Confidence 356799999999988 6679 9999999999999999999887432 35678897766655432 23333
Q ss_pred CC-cceEEEEEecCCCCHHHhhhhhhhhhhhHHHH--HhcCCcEEEEeccchhHH
Q psy210 311 NC-MDYTVVVAATAADSAAEQYISPYTGCTIGEYF--RDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 311 ~~-~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~--r~~g~~Vlv~~Ddltr~a 362 (915)
|+ +++ ++++.. + ..++ .++.+++.+ .+.+.--|||+||++.+.
T Consensus 79 Gvd~d~-llv~~~-~--~~E~-----~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 79 GVDPER-VIHTPV-Q--SLEQ-----LRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCCGGG-EEEEEC-S--BHHH-----HHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred CCCHHH-eEEEcC-C--CHHH-----HHHHHHHHHHHhhccCceEEEEecccccc
Confidence 54 333 333322 1 2333 124455555 245667899999999875
No 54
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.26 E-value=0.00039 Score=76.10 Aligned_cols=110 Identities=15% Similarity=0.260 Sum_probs=71.9
Q ss_pred ccccccceeeecccc------cccCCeeeeccCCCCChhhHHHHHHHHHHhcC-CcEEEEEEecCCCchHHHHHHHhhhc
Q psy210 664 NILETGIKVIDLLCP------FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH-KGCSVFIGVGERSREGNDFYHEMKES 736 (915)
Q Consensus 664 e~l~TGir~ID~l~p------igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~-~~~~v~~~iGer~~ev~e~~~~~~~~ 736 (915)
+.+.||+..+|.++. +.+| ++.|+|+||+|||+|+.+++.+..++. ...++|+---+..+.. ..+.+
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--ra~~l--- 78 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--YLRSM--- 78 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--HHHHT---
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--HHHHh---
Confidence 468999999999988 8899 999999999999999999998876542 3567776433333322 23333
Q ss_pred Cc-cccEEEEEEcCCCChHhHHHHHHHHHHHHHHH--HHCCCcEEEEecchhhHH
Q psy210 737 NV-LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEF--RNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 737 ~~-~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f--~~~g~~Vl~~~Ds~tr~a 788 (915)
|+ .++ ++++. .+ ..++. ++.+++.+ ...+.--+|++||++-+.
T Consensus 79 Gvd~d~-llv~~-~~--~~E~~-----~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 79 GVDPER-VIHTP-VQ--SLEQL-----RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCCGGG-EEEEE-CS--BHHHH-----HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred CCCHHH-eEEEc-CC--CHHHH-----HHHHHHHHHHhhccCceEEEEecccccc
Confidence 32 233 34332 22 12222 24455554 345777889999999765
No 55
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.17 E-value=0.00098 Score=68.96 Aligned_cols=44 Identities=27% Similarity=0.252 Sum_probs=39.7
Q ss_pred ccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 664 NILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 664 e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.+.||+..+|-++ -+-+|+-++|.|++|+|||+|+.+++.+..
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 49 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQ 49 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHh
Confidence 46899999999998 588999999999999999999999998643
No 56
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.95 E-value=0.00067 Score=69.13 Aligned_cols=39 Identities=31% Similarity=0.346 Sum_probs=36.9
Q ss_pred ccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHH
Q psy210 666 LETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 666 l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+.||+..+|-++. +-+|+-++|.|++|+|||+|+.+++.
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999985 99999999999999999999999997
No 57
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.94 E-value=0.0012 Score=73.51 Aligned_cols=110 Identities=22% Similarity=0.368 Sum_probs=70.9
Q ss_pred cccccccceeeecccc---cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc-
Q psy210 663 NNILETGIKVIDLLCP---FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV- 738 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p---igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~- 738 (915)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|+.+++.+.... ...++|+-..+..+.. ..+.+ |.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~--~a~~l---G~~ 112 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPE--YAKKL---GVD 112 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH--HHHHT---TCC
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHH--HHHHc---CCC
Confidence 4568999999999876 5699999999999999999999999887653 2345665443333322 22222 22
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
.++ +.+.. .+ ..++ .+.+++.+..+++--+|++||++.+.
T Consensus 113 ~~~-l~i~~-~~--~~e~------~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 113 TDS-LLVSQ-PD--TGEQ------ALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp GGG-CEEEC-CS--SHHH------HHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHH-eEEec-CC--CHHH------HHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 222 22332 11 2222 34566766666555577889999764
No 58
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.92 E-value=0.0011 Score=74.04 Aligned_cols=110 Identities=25% Similarity=0.376 Sum_probs=69.3
Q ss_pred ccccccceeeecccc---cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccc
Q psy210 664 NILETGIKVIDLLCP---FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD 740 (915)
Q Consensus 664 e~l~TGir~ID~l~p---igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~ 740 (915)
+.+.||+..+|-++. +.+|.=+.|+|++|+|||||+.+++.+..... ..++|+- +|...... ..+.+ ++..
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g-g~VlyId-~E~s~~~~-ra~rl---gv~~ 113 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG-GVAAFID-AEHALDPV-YAKNL---GVDL 113 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEE-SSCCCCHH-HHHHH---TCCG
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEe-cccccchH-HHHHc---CCch
Confidence 568999999999987 77999999999999999999999999876532 3355653 33322211 23333 2221
Q ss_pred cEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 741 KVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 741 ~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
..+.+... .+ . .-.+.+++.+...+.--++++||++.+.
T Consensus 114 ~~l~i~~~--~~-~------e~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 114 KSLLISQP--DH-G------EQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp GGCEEECC--SS-H------HHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred hhhhhhhc--cC-H------HHHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 22222221 11 1 2234556666655444467779998765
No 59
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.92 E-value=0.0015 Score=71.81 Aligned_cols=120 Identities=19% Similarity=0.207 Sum_probs=73.3
Q ss_pred cccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhcC-----CcEEEEEEecCC---CchHHHHHHH
Q psy210 663 NNILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH-----KGCSVFIGVGER---SREGNDFYHE 732 (915)
Q Consensus 663 ~e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~-----~~~~v~~~iGer---~~ev~e~~~~ 732 (915)
.+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+....+ ..-++|+- .|. ++.+.+..+.
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~-~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID-TEGTFRWERIENMAKA 164 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE-SSSCCCHHHHHHHHHH
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCCHHHHHHHHHH
Confidence 457899999999997 588999999999999999999999998764321 23455553 343 3445444433
Q ss_pred hhh--cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC-CCcEEEEecchhhHHHh
Q psy210 733 MKE--SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 733 ~~~--~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A 790 (915)
+.- ..++++ +.+....+ .++.. ..+..++.+..+ +.--+|++||++.+.++
T Consensus 165 ~g~~~~~~~~~-l~~~~~~~---~~~~~---~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 165 LGLDIDNVMNN-IYYIRAIN---TDHQI---AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp TTCCHHHHHHT-EEEEECCS---HHHHH---HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred hCCCHHHHhcc-EEEEeCCC---HHHHH---HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 311 111223 23333221 12211 123333333333 55568889999988765
No 60
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.90 E-value=0.0055 Score=69.44 Aligned_cols=45 Identities=29% Similarity=0.237 Sum_probs=40.0
Q ss_pred cccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 663 NNILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 663 ~e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
...+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+..
T Consensus 157 ~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 157 LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 357899999999987 688999999999999999999999887654
No 61
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.83 E-value=0.0016 Score=66.77 Aligned_cols=44 Identities=27% Similarity=0.279 Sum_probs=39.1
Q ss_pred ccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 664 NILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 664 e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.+.||+..+|-++ -+-+|+-++|+|++|+|||||+..++....
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999776 688999999999999999999999987543
No 62
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.83 E-value=0.00069 Score=75.58 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=68.1
Q ss_pred ccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCCcce
Q psy210 239 EPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDY 315 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~ 315 (915)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+++++.+....+-.|+|.-..+..+.. ..+++ ++...
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rl---gv~~~ 114 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNL---GVDLK 114 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHH---TCCGG
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHc---CCchh
Confidence 457899999999988 55799999999999999999888777643333345676544433322 22333 33212
Q ss_pred EEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 316 TVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 316 tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
.+.+... . ..+ ..+.+++.+.+.+..-++|+|+++.+.
T Consensus 115 ~l~i~~~--~-~~e------~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 115 SLLISQP--D-HGE------QALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp GCEEECC--S-SHH------HHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred hhhhhhc--c-CHH------HHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 2222211 1 122 334556665544444477789998765
No 63
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.77 E-value=0.0023 Score=70.33 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=72.8
Q ss_pred Cccccccceeeeccc--cccccceeeeecCCCCChhHHHHHHHHhhcCC------CeEEEEEeeccc--hhhHHHHHHHH
Q psy210 238 NEPLLTGIKSIDSMI--PIGKGQRELIIGDRQTGKTTIAIDTIINQKNK------NVICIYVCIGQK--ISSLINVINKL 307 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~--pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~------~~~~V~~~iGer--~~ev~~~~~~l 307 (915)
...+.||+..+|.++ -+-+|+-+.|+|++|+|||+++++...+.... +-.|+|.-.... .+.+.+..+.+
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999998 46679999999999999999988887763222 456778776654 45555544433
Q ss_pred hccCC-----cceEEEEEecCCCCHHHhhhhhhhhhhhHH-HHHhcCCcEEEEeccchhHHHH
Q psy210 308 KYYNC-----MDYTVVVAATAADSAAEQYISPYTGCTIGE-YFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 308 ~~~~~-----~~~tvvv~~~a~~~~~~r~~~~~~a~tiAE-y~r~~g~~Vlv~~Ddltr~a~A 364 (915)
+. +++ +.+... .. .++.. ..+..++ .+++.+.--+||+|+++.+..+
T Consensus 166 ---g~~~~~~~~~-l~~~~~-~~--~~~~~---~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 166 ---GLDIDNVMNN-IYYIRA-IN--TDHQI---AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp ---TCCHHHHHHT-EEEEEC-CS--HHHHH---HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred ---CCCHHHHhcc-EEEEeC-CC--HHHHH---HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 22 122 222221 11 11111 1222333 3334244558999999998754
No 64
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.75 E-value=0.0012 Score=73.49 Aligned_cols=110 Identities=21% Similarity=0.298 Sum_probs=70.7
Q ss_pred Cccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-c
Q psy210 238 NEPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-M 313 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 313 (915)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|+++.+.+....+-.|+|.-..+..+.. .. +..|. .
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~--~a---~~lG~~~ 113 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE--YA---KKLGVDT 113 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HH---HHTTCCG
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH--HH---HHcCCCH
Confidence 3568899999999987 34699999999999999999988877643334446677666544432 12 22233 2
Q ss_pred ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 314 ~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
++ +.+... ...++ .+.+++.+...+.--+||+|+++.+.
T Consensus 114 ~~-l~i~~~---~~~e~------~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 114 DS-LLVSQP---DTGEQ------ALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp GG-CEEECC---SSHHH------HHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HH-eEEecC---CCHHH------HHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 33 222221 11222 34566666644444488999999765
No 65
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.71 E-value=0.001 Score=67.66 Aligned_cols=52 Identities=33% Similarity=0.410 Sum_probs=40.6
Q ss_pred ccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeecc
Q psy210 241 LLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQ 295 (915)
Q Consensus 241 l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGe 295 (915)
+.||+..+|.++. +-+|+-++|.|++|+|||+++.+... .. +-.++|....+
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~--~~~v~~i~~~~ 55 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS--GKKVAYVDTEG 55 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH--CSEEEEEESSC
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc--CCcEEEEECCC
Confidence 5799999999986 88899999999999999999765555 22 23456665544
No 66
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.70 E-value=0.0045 Score=68.58 Aligned_cols=120 Identities=23% Similarity=0.192 Sum_probs=72.4
Q ss_pred cccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhc-----CCcEEEEEEecCC---CchHHHHHHH
Q psy210 663 NNILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE-----HKGCSVFIGVGER---SREGNDFYHE 732 (915)
Q Consensus 663 ~e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~-----~~~~~v~~~iGer---~~ev~e~~~~ 732 (915)
.+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.... ...-++|+- .|. ++.+.+..+.
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~-~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID-TENTFRPDRLRDIADR 179 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE-SSSCCCHHHHHHHHHH
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCCHHHHHHHHHH
Confidence 467899999999998 58899999999999999999999999875431 123455553 343 3344444333
Q ss_pred hhh--cCccccEEEEEEcCCCChHhHHHHHHHHHHHH-HHHHHC-CCcEEEEecchhhHHHh
Q psy210 733 MKE--SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIA-EEFRNS-GKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 733 ~~~--~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~A-e~f~~~-g~~Vl~~~Ds~tr~a~A 790 (915)
+.- +.++++ +.+....+ .++... .+..+ +.++.. +.--+|++||++.+..+
T Consensus 180 ~g~~~~~~l~~-l~~~~~~~---~e~~~~---ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 180 FNVDHDAVLDN-VLYARAYT---SEHQME---LLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TTCCHHHHHHT-EEEEECCS---TTHHHH---HHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred cCCCHHHHHhc-eeEeecCC---HHHHHH---HHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 211 112234 23333222 112111 12223 344442 45558889999998765
No 67
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.67 E-value=0.0025 Score=71.09 Aligned_cols=111 Identities=20% Similarity=0.319 Sum_probs=69.5
Q ss_pred cccccccceeeecccc---cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCcc
Q psy210 663 NNILETGIKVIDLLCP---FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVL 739 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p---igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~ 739 (915)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|+.+++.+..... .-++|+-.-+..+.. ..+.+.-. .
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g-~~vlyid~E~s~~~~--~a~~~g~~--~ 115 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEHALDPI--YARKLGVD--I 115 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEESSCCCCHH--HHHHTTCC--G
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEeCCCCccHH--HHHHcCCC--h
Confidence 4568999999999987 77999999999999999999999999876532 334555332222222 12223111 2
Q ss_pred ccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 740 DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 740 ~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
++ +.+. ..+ ..++ .+.+++.+..++.--+|++||++.+.
T Consensus 116 ~~-l~i~-~~~--~~e~------~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 116 DN-LLCS-QPD--TGEQ------ALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp GG-CEEE-CCS--SHHH------HHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred hh-eeee-CCC--CHHH------HHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 23 2222 211 2222 34556666554443467889999765
No 68
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.62 E-value=0.0041 Score=63.56 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=34.8
Q ss_pred ccccccceeeeccc--cccccceeeeecCCCCChhHHHHHHHHh
Q psy210 239 EPLLTGIKSIDSMI--PIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 239 ~~l~TGi~aiD~l~--pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
+.+.||+..+|.++ -+-+|+.++|+|++|+||||| +.+|+.
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTl-l~~l~g 47 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQL-AHTLAV 47 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHH-HHHHHH
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHH-HHHHHH
Confidence 46889999999877 566799999999999999999 555554
No 69
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.62 E-value=0.0027 Score=71.14 Aligned_cols=110 Identities=22% Similarity=0.331 Sum_probs=71.6
Q ss_pred cccccccceeeecccc---cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCc-
Q psy210 663 NNILETGIKVIDLLCP---FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNV- 738 (915)
Q Consensus 663 ~e~l~TGir~ID~l~p---igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~- 738 (915)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|+.+++.+.... ..-++|+-.-+..+.. ..+.+ ++
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~--~a~~~---g~d 125 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPV--YARAL---GVN 125 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH--HHHHT---TCC
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHH--HHHHc---CCC
Confidence 4578999999999987 6699999999999999999999999987653 2345666544433333 12222 22
Q ss_pred cccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 739 ~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
.++ +.+. ..+ ..+ -.+.+++.+...+.--+||+||++.+.
T Consensus 126 ~~~-l~i~-~~~--~~e------~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 126 TDE-LLVS-QPD--NGE------QALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp GGG-CEEE-CCS--SHH------HHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHH-ceee-cCC--cHH------HHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 222 2232 222 122 234566777665544467889999764
No 70
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.59 E-value=0.0012 Score=67.44 Aligned_cols=63 Identities=25% Similarity=0.277 Sum_probs=47.6
Q ss_pred ccccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHH
Q psy210 664 NILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGN 727 (915)
Q Consensus 664 e~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~ 727 (915)
+.+.||++.+|-++. +-+|+-++|.|++|+|||||+.+++......... ++|....+..+++.
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~-v~~~~~~~~~~~~~ 67 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDP-CIYVTTEESRDSII 67 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCC-EEEEESSSCHHHHH
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCe-EEEEEcccCHHHHH
Confidence 457899999999985 8899999999999999999999999776543333 44544444333433
No 71
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.58 E-value=0.0012 Score=68.56 Aligned_cols=43 Identities=33% Similarity=0.433 Sum_probs=38.5
Q ss_pred ccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 664 NILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 664 e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.||+..+|-++ -+-+|+-++|+|++|+|||||+..++.+.
T Consensus 10 ~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~ 54 (251)
T 2ehv_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45899999999887 69999999999999999999999998543
No 72
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.57 E-value=0.0017 Score=72.40 Aligned_cols=110 Identities=20% Similarity=0.337 Sum_probs=69.7
Q ss_pred Cccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-c
Q psy210 238 NEPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-M 313 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 313 (915)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+||++.+.+....+..|+|.-..+..+... .+.+ +. +
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~--a~~~---g~~~ 115 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL---GVDI 115 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH--HHHT---TCCG
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH--HHHc---CCCh
Confidence 4578899999999987 557999999999999999999888776433333466766655443321 2222 33 2
Q ss_pred ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 314 ~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
++ +.+.. .+ ..+ ....+++.+.+.+.--+||+|+++.+.
T Consensus 116 ~~-l~i~~-~~--~~e------~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 116 DN-LLCSQ-PD--TGE------QALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp GG-CEEEC-CS--SHH------HHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred hh-eeeeC-CC--CHH------HHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 22 22221 11 122 234556666543333478999999775
No 73
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.54 E-value=0.0046 Score=68.45 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=71.5
Q ss_pred Cccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcC------CCeEEEEEeeccc--hhhHHHHHHHH
Q psy210 238 NEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKN------KNVICIYVCIGQK--ISSLINVINKL 307 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~------~~~~~V~~~iGer--~~ev~~~~~~l 307 (915)
.+.+.||+..+|.++. +-+|+-+.|+|++|+|||+++++...+... .+-.|+|.-.... .+.+.+..+.+
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 4568899999999984 667999999999999999998887776321 2445777776653 44444444433
Q ss_pred hcc--CCcceEEEEEecCCCCHHHhhhhhhhhh-hhHHHHHhc-CCcEEEEeccchhHHHH
Q psy210 308 KYY--NCMDYTVVVAATAADSAAEQYISPYTGC-TIGEYFRDL-GQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 308 ~~~--~~~~~tvvv~~~a~~~~~~r~~~~~~a~-tiAEy~r~~-g~~Vlv~~Ddltr~a~A 364 (915)
.-. .++++ +.+....+ .++.. ..+ .+.+.+++. +.--+||+|+++.+..+
T Consensus 181 g~~~~~~l~~-l~~~~~~~---~e~~~---~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 181 NVDHDAVLDN-VLYARAYT---SEHQM---ELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TCCHHHHHHT-EEEEECCS---TTHHH---HHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CCCHHHHHhc-eeEeecCC---HHHHH---HHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 110 01133 22222211 11111 111 222344441 44458999999998754
No 74
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=96.53 E-value=0.0002 Score=81.60 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=77.2
Q ss_pred cccChhhhhhcCCCCCcceeEEeecCCCCceEEecccccCCCHHHHHHHHHHhc--------------------------
Q psy210 57 YCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKIT-------------------------- 110 (915)
Q Consensus 57 ~~~si~~k~~~~~~~~~~~~~l~~e~~~~~~~~~~G~~t~l~~~~q~~~~~~ip-------------------------- 110 (915)
+.+..+.+|.-||+...++++.+........-+.+.++..||...+..+++..+
T Consensus 270 ~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 349 (417)
T 3v76_A 270 WREGEEIVLRLMPDIDIASILKGMRRANGRQAVQTALADILPRRLAQFFADEAKLTGRMLADLSDKTIDALASSIQVWAV 349 (417)
T ss_dssp CCTTCCEEEEESTTSCHHHHHHHHHHHTCSSBHHHHHTTTSCHHHHHHHHHHTTCTTCBGGGCCHHHHHHHHHHHHSEEE
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHHhchhhhHHHHHHHHhhHHHHHHHHHhcCCCCCchhhCCHHHHHHHHHHhcCCEE
Confidence 345566778888998888877676666667777788999999999999988754
Q ss_pred ------CccceeeecceeEEEEeecChhhcccccccccCCCceEeeEeeccch
Q psy210 111 ------GLNYSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTG 157 (915)
Q Consensus 111 ------gl~~a~~~r~g~~~~~~~~~p~~L~~~le~~~~~g~~~aGQI~Gt~G 157 (915)
|+++|++.+.| +.++.||| .|+|.|..||+||+|+|..++|
T Consensus 350 ~~~g~~~~~~a~vt~GG--V~~~ei~~----~tmesk~~~gLy~aGE~lD~~~ 396 (417)
T 3v76_A 350 KPAGSEGYRTAEVTLGG--VDTRALDS----RTMQAKEVPGLYFVGECVDVTG 396 (417)
T ss_dssp CCCEECCTTTCSEEEEE--ECGGGBCT----TTCBBTTSTTEEECGGGBSEEE
T ss_pred EecccCCcceEEEeCCC--CccccCCh----hhccccCCCCeEEEEEeEeccc
Confidence 99999999988 67777777 7899999999999996666654
No 75
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.43 E-value=0.0021 Score=72.06 Aligned_cols=110 Identities=19% Similarity=0.290 Sum_probs=70.9
Q ss_pred Cccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-c
Q psy210 238 NEPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-M 313 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 313 (915)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+||++.+.+....+-.|+|.-.....+... .+. .++ +
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~--a~~---~g~d~ 126 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY--ARA---LGVNT 126 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH--HHH---TTCCG
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH--HHH---cCCCH
Confidence 4578899999999987 446999999999999999999888776433333467777766554431 222 233 2
Q ss_pred ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 314 ~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
++ +.+... + ..+ ..+.+++.+.+.+.--+||+|+++.+.
T Consensus 127 ~~-l~i~~~-~--~~e------~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 DE-LLVSQP-D--NGE------QALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp GG-CEEECC-S--SHH------HHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HH-ceeecC-C--cHH------HHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 22 222221 1 122 234556666644434478899999764
No 76
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.0064 Score=62.72 Aligned_cols=42 Identities=29% Similarity=0.441 Sum_probs=35.8
Q ss_pred ccccccceeeeccc--cccccceeeeecCCCCChhHHHHHHHHh
Q psy210 239 EPLLTGIKSIDSMI--PIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 239 ~~l~TGi~aiD~l~--pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
+.+.||+..+|.++ -+-+|+-++|.|++|+|||+|+.....+
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999998 4678999999999999999996555543
No 77
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.30 E-value=0.0098 Score=64.92 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=73.0
Q ss_pred Cccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhc------------CCC----eEEEEEeeccc--h
Q psy210 238 NEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQK------------NKN----VICIYVCIGQK--I 297 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~------------~~~----~~~V~~~iGer--~ 297 (915)
...+.||+..+|.++. +-+|+-+.|.|++|+|||++|++...+.. ..+ -.|+|.-..+. .
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~ 156 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 156 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH
Confidence 4568899999999984 56799999999999999999988876521 112 56788877765 5
Q ss_pred hhHHHHHHHHhcc--CCcceEEEEEecCCCCHHHhhhhhhhhhh-hHHHHHhcCCcEEEEeccchhHHHH
Q psy210 298 SSLINVINKLKYY--NCMDYTVVVAATAADSAAEQYISPYTGCT-IGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 298 ~ev~~~~~~l~~~--~~~~~tvvv~~~a~~~~~~r~~~~~~a~t-iAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
+.+.+..+.+.-. .++++ +.+... .. .++.. ..+. +.+.+++.+.--+||+|+++.+..+
T Consensus 157 ~~l~~~~~~~g~~~~~~~~~-l~~~~~-~~--~~~~~---~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 157 ERIMQMAEHAGIDGQTVLDN-TFVARA-YN--SDMQM---LFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHHHHHHHHHTCCHHHHHHT-EEEEEC-SS--HHHHH---HHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhcC-EEEEeC-CC--HHHHH---HHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 5555555444110 00123 222221 11 11111 1122 3334444144458999999998754
No 78
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.26 E-value=0.0096 Score=65.00 Aligned_cols=120 Identities=18% Similarity=0.094 Sum_probs=72.1
Q ss_pred cccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhc-----------CC----cEEEEEEecCC---
Q psy210 663 NNILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE-----------HK----GCSVFIGVGER--- 722 (915)
Q Consensus 663 ~e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~-----------~~----~~~v~~~iGer--- 722 (915)
.+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.... .. .-++|+- .|.
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~-~e~~~~ 155 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID-TEGTFR 155 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE-SSSCCC
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE-CCCCCC
Confidence 346889999999998 57789999999999999999999999874321 11 3445553 443
Q ss_pred CchHHHHHHHhhh--cCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC-CCcEEEEecchhhHHHh
Q psy210 723 SREGNDFYHEMKE--SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 723 ~~ev~e~~~~~~~--~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~-g~~Vl~~~Ds~tr~a~A 790 (915)
++.+.+..+.+.- +.++++ +.+....+ .++.. ..+...+.+..+ +.--+|++||++.+..+
T Consensus 156 ~~~l~~~~~~~g~~~~~~~~~-l~~~~~~~---~~~~~---~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 156 PERIMQMAEHAGIDGQTVLDN-TFVARAYN---SDMQM---LFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHHHHHHHHHHTCCHHHHHHT-EEEEECSS---HHHHH---HHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHhcC-EEEEeCCC---HHHHH---HHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 3455554443311 111233 23333221 12211 122333334444 45558899999988754
No 79
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.23 E-value=0.005 Score=68.46 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=72.5
Q ss_pred cccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhc--C---CcEEEEEEecCC---CchHHHHHHH
Q psy210 663 NNILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE--H---KGCSVFIGVGER---SREGNDFYHE 732 (915)
Q Consensus 663 ~e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~--~---~~~~v~~~iGer---~~ev~e~~~~ 732 (915)
.+.+.||+..+|-++ -+-+|+-++|+|++|+|||||+.+++.+.... . .+-+||+ -+|. ++.+..+.+.
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i-~~e~~~~~~~i~~i~q~ 188 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI-DTENTFRPERIREIAQN 188 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEE-ESSSCCCHHHHHHHHHT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEE-eCCCCCCHHHHHHHHHH
Confidence 456899999999985 67799999999999999999999999876321 1 1344665 3343 2334433332
Q ss_pred hh--hcCccccEEEEEEcCCCChHhHHHHHHHHHHHHHHHHHC-----CCcEEEEecchhhHHHh
Q psy210 733 MK--ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-----GKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 733 ~~--~~~~~~~~~vv~~t~d~~~~~r~~~~~~a~~~Ae~f~~~-----g~~Vl~~~Ds~tr~a~A 790 (915)
+. ...++++- .+....+ +... ...+..+..+..+ ..-=+||+||+|-.-++
T Consensus 189 ~~~~~~~v~~ni-~~~~~~~--~~~~----~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 189 RGLDPDEVLKHI-YVARAFN--SNHQ----MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp TTCCHHHHGGGE-EEEECCS--HHHH----HHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred cCCCHHHHhhCE-EEEecCC--hHHH----HHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 21 11234443 3333221 1111 1233445555543 55668889999986655
No 80
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.21 E-value=0.011 Score=63.47 Aligned_cols=46 Identities=20% Similarity=0.086 Sum_probs=39.6
Q ss_pred ccccc-cceeeeccc-ccccCCeeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 664 NILET-GIKVIDLLC-PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 664 e~l~T-Gir~ID~l~-pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
.-+.| |+.++|-++ .+-+|+-++|.|++|+|||||+.+|+.+....
T Consensus 15 ~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 15 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34778 998888665 68899999999999999999999999987654
No 81
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.13 E-value=0.015 Score=63.46 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=43.6
Q ss_pred ccccccceeeecccc-cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEE
Q psy210 664 NILETGIKVIDLLCP-FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIG 718 (915)
Q Consensus 664 e~l~TGir~ID~l~p-igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~ 718 (915)
+.+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+++.+.+.++ .-++|..
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~s 103 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHS 103 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEE
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEE
Confidence 468899999998864 77999999999999999999999999887543 2334443
No 82
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.12 E-value=0.0031 Score=65.31 Aligned_cols=63 Identities=25% Similarity=0.389 Sum_probs=50.1
Q ss_pred ccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhh-cCCCeEEEEEeeccchhhHHHH
Q psy210 241 LLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQ-KNKNVICIYVCIGQKISSLINV 303 (915)
Q Consensus 241 l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~-~~~~~~~V~~~iGer~~ev~~~ 303 (915)
+.||+..+|.++. +-+|+=+.|.|++|+|||++|++.+.+. .+.+-.|+|....+..+++.+-
T Consensus 12 i~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~ 77 (251)
T 2zts_A 12 VKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRRE 77 (251)
T ss_dssp ECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHH
T ss_pred ecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHH
Confidence 6799999999997 7789999999999999999999987763 2323346788888777655443
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.08 E-value=0.0032 Score=64.30 Aligned_cols=64 Identities=31% Similarity=0.435 Sum_probs=44.7
Q ss_pred ccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHH
Q psy210 239 EPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLIN 302 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~ 302 (915)
+.+.||+..+|.++. +-+|+-++|.|++|+|||||+..........+..++|.......+++.+
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 68 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIR 68 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHH
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHH
Confidence 357899999999985 7789999999999999999964443332222223556665555444443
No 84
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.0031 Score=65.21 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=47.6
Q ss_pred ccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHH
Q psy210 239 EPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLIN 302 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~ 302 (915)
+.+.||+..+|.++. +-+|+-++|.|++|+|||+++++.+.+....+-.++|....+..+++.+
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~ 68 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQ 68 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHH
Confidence 357899999999864 5569999999999999999988776664333334667776665544433
No 85
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.93 E-value=0.004 Score=64.37 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=46.9
Q ss_pred ccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchH
Q psy210 664 NILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREG 726 (915)
Q Consensus 664 e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev 726 (915)
+.+.||++.+|-++ -+-+|+-++|.|++|+|||+|+.+++.+..... .-++|+..-+..+++
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-~~v~~~~~e~~~~~~ 66 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG-EPGIYVALEEHPVQV 66 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEEESSSCHHHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEEccCCHHHH
Confidence 45789999999885 477999999999999999999999988776532 334555544433333
No 86
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.91 E-value=0.022 Score=62.14 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=49.0
Q ss_pred ccccccceeeecccc-ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHH
Q psy210 239 EPLLTGIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLIN 302 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p-igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~ 302 (915)
+.+.||+..+|.++- +-+|+-+.|.|.+|+|||+++++...+....+-.|+|....+..+++..
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~ 113 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIK 113 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHH
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHH
Confidence 467899999999873 4469999999999999999998877665444445677777766655443
No 87
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.88 E-value=0.016 Score=66.51 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=40.5
Q ss_pred ccccccceeeeccc-ccccCCeeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 664 NILETGIKVIDLLC-PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 664 e~l~TGir~ID~l~-pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
..+.||+..+|-++ -+-+|+-+.|.|+||+|||+|+.+++.+.+..
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~ 230 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK 230 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45889999999887 37799999999999999999999999988753
No 88
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=95.78 E-value=0.0068 Score=59.47 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhccCcccccccccceeeccCcccccChh
Q psy210 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITGPRYCPSIE 62 (915)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~g~g~~~~~~~~~~aRqPe~~~~l~~~mIig~g~~~~~si~ 62 (915)
+..++++++++++++|+++|+|.++++++.+++||||...+ +++..+....-.|-
T Consensus 14 ~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k----~li~~~l~e~~~IY 68 (156)
T 2bl2_A 14 FAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQ----ALILQLLPGTQGLY 68 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHH----HHHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH----HHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998855 55544444433333
No 89
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.63 E-value=0.016 Score=65.55 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=42.8
Q ss_pred Cccccccceeeeccc--cccccceeeeecCCCCChhHHHHHHHHhhcC------CCeEEEEEeec
Q psy210 238 NEPLLTGIKSIDSMI--PIGKGQRELIIGDRQTGKTTIAIDTIINQKN------KNVICIYVCIG 294 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~--pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~------~~~~~V~~~iG 294 (915)
...+.||+..+|.++ -+-+|+-+.|+|++|+|||+|+++.+.+... .+-.++|.--.
T Consensus 157 ~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 157 LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 457899999999998 4667999999999999999997766544321 23446665443
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.52 E-value=0.0072 Score=62.59 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=34.6
Q ss_pred ccccccceeeeccc--cccccceeeeecCCCCChhHHHHHHHH
Q psy210 239 EPLLTGIKSIDSMI--PIGKGQRELIIGDRQTGKTTIAIDTII 279 (915)
Q Consensus 239 ~~l~TGi~aiD~l~--pigrGqr~~I~g~~g~GKt~l~l~~i~ 279 (915)
+.+.||+..+|.++ -+-+|+-++|+|++|+||||| +.+|+
T Consensus 10 ~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTL-l~~i~ 51 (251)
T 2ehv_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTF-AAQFI 51 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHH-HHHHH
T ss_pred ceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHH-HHHHH
Confidence 45789999999987 578899999999999999999 55555
No 91
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.50 E-value=0.023 Score=60.50 Aligned_cols=198 Identities=8% Similarity=-0.069 Sum_probs=108.8
Q ss_pred cccccceeeecccc--cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHh-------hh
Q psy210 665 ILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEM-------KE 735 (915)
Q Consensus 665 ~l~TGir~ID~l~p--igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~-------~~ 735 (915)
.+.|||.-+|-++- +-+|--++|.|+||+|||+|+.+++.+-.++ .+-++|+...|.+.++..-.+.+ .+
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~-Ge~~~~~~~~e~~~~l~~~~~~~G~dl~~~~~ 80 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS-DNLVGMFSISYPLQLIIRILSRFGVDVIKYLE 80 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHHTTCCHHHHHH
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC-CCcEEEEEEeCCHHHHHHHHHHcCCCHHHHhh
Confidence 36799999888864 5588899999999999999999998865543 57899999999888876544433 12
Q ss_pred cCccccEEEE----------------EEcC-CCChHhH---HHHHHHHHHHHHHHHH--CCCcEEEEecchhhHHHhhhh
Q psy210 736 SNVLDKVSLI----------------YGQM-NEPSGNR---LRVALTGLSIAEEFRN--SGKDVLLFIDNIYRFTLAGTE 793 (915)
Q Consensus 736 ~~~~~~~~vv----------------~~t~-d~~~~~r---~~~~~~a~~~Ae~f~~--~g~~Vl~~~Ds~tr~a~A~re 793 (915)
+| +-.++ +..+ +-.+.+- ++...-...-||...+ ..++|++++|++.-+..+..+
T Consensus 81 ~g---~l~i~d~~~~~~~~~~~~~~v~~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~~~~~ 157 (260)
T 3bs4_A 81 NH---RLAIVDTFGSFHGIKATMPGVWYLEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLEVFTP 157 (260)
T ss_dssp TT---SEEEECHHHHHHTC---CTTEECCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGGTSCH
T ss_pred CC---cEEEEEcccccccccccccceecccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecchHHHHhCh
Confidence 22 11222 1111 2223222 3332222111333445 248888888888766544311
Q ss_pred hhhhcCCCCCCCCCcchhhHHHHH-HHHHhcCCCCCceeEEEEEEecCCCCCCCcccccccccCcEEEeeHHHHhcCCCc
Q psy210 794 VSAMLGRTPSAVGYQPTLAEEMGK-LQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYP 872 (915)
Q Consensus 794 is~~~ge~p~~~gyp~~l~~~l~~-l~ERag~~~~GSiT~i~~v~~~~~d~~dpi~~~~~~i~dg~ivLsr~La~~g~~P 872 (915)
.. +-..+...++. ..+..-+.+.|..|. .+.. +..+...+..+.++.||-|.|.....+.+..=
T Consensus 158 ---------~~--~~~~~~~ll~~~~~~~~~~~~~~~tti-l~~~---~~~~~~~~~~l~~laD~VI~lr~~e~~g~~rR 222 (260)
T 3bs4_A 158 ---------EE--TLRYLETSAEVRYGHPAYKKYPRGTNF-WLWE---GVKDKRVLLSVYRRADYVLKTRSSLGENGIKR 222 (260)
T ss_dssp ---------HH--HHHHHHHHHHHHHHCHHHHSSCCCEEE-EEEE---SCSCHHHHHHHHHHCSEEEEEEEEEETTEEEE
T ss_pred ---------hh--HHHHHHHHHHhhhhHHHHhccCCcEEE-EEEC---CCcccccccceEEEeeEEEEEEEEecCCceEE
Confidence 00 01111222222 000011112454444 3333 23333344556677899999977655544445
Q ss_pred cccCCCCcc
Q psy210 873 AIDPLESYS 881 (915)
Q Consensus 873 AIdv~~S~S 881 (915)
++-|+++-.
T Consensus 223 ~L~V~K~Rg 231 (260)
T 3bs4_A 223 ELLVIKTPK 231 (260)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 566666543
No 92
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.42 E-value=0.017 Score=64.12 Aligned_cols=120 Identities=20% Similarity=0.158 Sum_probs=67.9
Q ss_pred Cccccccceeeecccc--ccccceeeeecCCCCChhHHHHHHHHhhc-C--C---CeEEEEEeeccc--hhhHHHHHHHH
Q psy210 238 NEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQK-N--K---NVICIYVCIGQK--ISSLINVINKL 307 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p--igrGqr~~I~g~~g~GKt~l~l~~i~~~~-~--~---~~~~V~~~iGer--~~ev~~~~~~l 307 (915)
.+.+.||+..+|.++. +-+|+-+.|+|++|+|||+|++....... . . +-.|||.---+. .+.+..+.+.+
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~ 189 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR 189 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 4567899999999864 55799999999999999999766555431 1 1 235666643332 23344333322
Q ss_pred h--ccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhc-----CCcEEEEeccchhHHHH
Q psy210 308 K--YYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL-----GQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 308 ~--~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~-----g~~Vlv~~Ddltr~a~A 364 (915)
. ...++++-.+ ... ..+ ..+ ...+..+..+... ..-=+||+|++|..-++
T Consensus 190 ~~~~~~v~~ni~~-~~~-~~~-~~~----~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 190 GLDPDEVLKHIYV-ARA-FNS-NHQ----MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp TCCHHHHGGGEEE-EEC-CSH-HHH----HHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred CCCHHHHhhCEEE-Eec-CCh-HHH----HHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 1 0112333322 221 111 111 1223344444432 44568999999987655
No 93
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.28 E-value=0.019 Score=61.23 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=54.1
Q ss_pred ccccceeeecccccc--ccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHH
Q psy210 241 LLTGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINK 306 (915)
Q Consensus 241 l~TGi~aiD~l~pig--rGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~ 306 (915)
+.|||..+|.++.=| +|--++|.|++++|||+++++.+.+....+=.|+|....|..+++..-.+.
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~ 70 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSR 70 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHH
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHH
Confidence 579999999997644 598899999999999999999998876556679999999988776654443
No 94
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.26 E-value=0.037 Score=63.35 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=44.0
Q ss_pred ccccccceeeecccc-cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCC
Q psy210 664 NILETGIKVIDLLCP-FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERS 723 (915)
Q Consensus 664 e~l~TGir~ID~l~p-igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~ 723 (915)
..+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+++.+.+..+..-++|. -.|-+
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~-slE~~ 240 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY-SLEMP 240 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE-ESSSC
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE-ECCCC
Confidence 457899999998873 669999999999999999999999998875332223443 34444
No 95
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.16 E-value=0.015 Score=76.26 Aligned_cols=110 Identities=20% Similarity=0.329 Sum_probs=75.3
Q ss_pred Cccccccceeeecccc---ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHHHHHHHHhccCC-c
Q psy210 238 NEPLLTGIKSIDSMIP---IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC-M 313 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p---igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 313 (915)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+||++.+.+....+-.|+|.-..+..+... .+..|+ +
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~ 435 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDI 435 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-----HHHTTCCG
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHH-----HHHcCCCH
Confidence 4578999999999987 668999999999999999999999887544444678888887776652 223344 3
Q ss_pred ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 314 ~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
++- .+.. . + ..++ .+.+++.+.+.+.--+||+|+++-+.
T Consensus 436 ~~L-~i~~-~-~-~~e~------~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 436 DNL-LCSQ-P-D-TGEQ------ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp GGC-EEEC-C-S-SHHH------HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred HHe-EEcC-C-C-CHHH------HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 332 2222 1 1 2333 34455655544444488999998664
No 96
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.10 E-value=0.013 Score=64.25 Aligned_cols=44 Identities=18% Similarity=0.056 Sum_probs=36.9
Q ss_pred ccccccccceeeeccc-ccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 662 NNNILETGIKVIDLLC-PFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~-pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+...+.||+.-+|-++ -+-+|.-+.|.|+||+|||+|+.+++.+
T Consensus 102 i~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 102 LTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SSTTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hhhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3455779999999887 3447778899999999999999999876
No 97
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.07 E-value=0.036 Score=60.96 Aligned_cols=99 Identities=13% Similarity=0.137 Sum_probs=54.8
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcC----CcE-EEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEH----KGC-SVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSG 754 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~----~~~-~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~ 754 (915)
+.+.-+.|.|++|+|||+|+..+++...... .+. .+++-|..- ....+++..+.+. +... ......+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~--l~~~---~~~~~~~~~ 115 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR-ETPYRVASAIAEA--VGVR---VPFTGLSVG 115 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS-CSHHHHHHHHHHH--HSCC---CCSSCCCHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC-CCHHHHHHHHHHH--hCCC---CCCCCCCHH
Confidence 5678899999999999999999998764321 133 344444432 2333344433221 0000 000111111
Q ss_pred hHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHHHh
Q psy210 755 NRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLA 790 (915)
Q Consensus 755 ~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A 790 (915)
. .--.+.+++...|+.++|++|++-++...
T Consensus 116 ~------~~~~l~~~l~~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 116 E------VYERLVKRLSRLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp H------HHHHHHHHHTTSCSEEEEEEETTTHHHHS
T ss_pred H------HHHHHHHHHhccCCeEEEEEccHhhhccc
Confidence 1 11123344555688999999999887653
No 98
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.97 E-value=0.035 Score=64.51 Aligned_cols=61 Identities=15% Similarity=-0.036 Sum_probs=45.2
Q ss_pred cccc-cceeeecccc-cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCch
Q psy210 665 ILET-GIKVIDLLCP-FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSRE 725 (915)
Q Consensus 665 ~l~T-Gir~ID~l~p-igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~e 725 (915)
.+.| |+..+|-++- +-+|+=+.|.|+||+|||+|+.+++.+.+.++..-++|+..-+..++
T Consensus 223 ~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~ 285 (503)
T 1q57_A 223 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEE 285 (503)
T ss_dssp CSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHH
T ss_pred CccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHH
Confidence 4678 8888887763 66899999999999999999999999987643333455544443333
No 99
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.70 E-value=0.053 Score=59.44 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=55.8
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCC-c-EEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHK-G-CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL 757 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~-~-~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~ 757 (915)
.+++-+.|.|++|+|||+|+..+++....... + ..+++-+.+.. ...+++..+.+. +... ......+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~--l~~~---~~~~~~~~~~-- 114 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLES--LDVK---VPFTGLSIAE-- 114 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTT--TSCC---CCSSSCCHHH--
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHH--hCCC---CCCCCCCHHH--
Confidence 56788999999999999999999987654321 2 34555544322 233445444321 1000 0001111111
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEecchhhHHH
Q psy210 758 RVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789 (915)
Q Consensus 758 ~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~ 789 (915)
.--.+.+++...++.++|++|++..+..
T Consensus 115 ----~~~~l~~~l~~~~~~~vlilDE~~~l~~ 142 (386)
T 2qby_A 115 ----LYRRLVKAVRDYGSQVVIVLDEIDAFVK 142 (386)
T ss_dssp ----HHHHHHHHHHTCCSCEEEEEETHHHHHH
T ss_pred ----HHHHHHHHHhccCCeEEEEEcChhhhhc
Confidence 1112334555568899999999987654
No 100
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.60 E-value=0.081 Score=58.43 Aligned_cols=59 Identities=24% Similarity=0.191 Sum_probs=46.5
Q ss_pred ccccccceeeeccc-ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCc
Q psy210 664 NILETGIKVIDLLC-PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSR 724 (915)
Q Consensus 664 e~l~TGir~ID~l~-pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ 724 (915)
.-+.||+..+|-++ -+-+|+=+.|.|+||+|||+|+.+++.+.+.. +..|...-.|-+.
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEMSA 86 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSSCH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCH
Confidence 45899999999876 48899999999999999999999999988763 3334444455543
No 101
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.60 E-value=0.054 Score=62.91 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=48.6
Q ss_pred ccccc-cceeeecccc-ccccceeeeecCCCCChhHHHHHHHHhhcCC-CeEEEEEeeccchhhHH
Q psy210 239 EPLLT-GIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTIINQKNK-NVICIYVCIGQKISSLI 301 (915)
Q Consensus 239 ~~l~T-Gi~aiD~l~p-igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~-~~~~V~~~iGer~~ev~ 301 (915)
..+.| |+..+|.++- +-+|+=+.|.|++|+|||+++++...+.... +..|+|....+..+++.
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~ 287 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETA 287 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHH
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHH
Confidence 36778 9999999874 4459999999999999999998887775433 44567777777665443
No 102
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.59 E-value=0.068 Score=59.04 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=48.0
Q ss_pred ccccccceeeecccc-ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHH
Q psy210 239 EPLLTGIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLI 301 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p-igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~ 301 (915)
.-+.||+..+|.++- +-+|+=+.|.|.+|+|||+++++...+....+..|.|....+..+++.
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~ 90 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLA 90 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 457799999999884 556999999999999999998887666543444566666666655543
No 103
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.54 E-value=0.03 Score=59.71 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=39.4
Q ss_pred ccccccccceeeecccc-cccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 662 NNNILETGIKVIDLLCP-FLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 662 ~~e~l~TGir~ID~l~p-igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
..+.+.||+.-+|.++. +-+|+-++|+|++|+|||||+.+++..+..
T Consensus 9 ~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 9 ILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp HHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 45668999988886654 559999999999999999999999987654
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.45 E-value=0.16 Score=59.26 Aligned_cols=58 Identities=26% Similarity=0.426 Sum_probs=42.2
Q ss_pred ccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCC
Q psy210 664 NILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERS 723 (915)
Q Consensus 664 e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~ 723 (915)
+.+.||+.-+|-++ .+-+|+-++|.|++|+|||||+.+++.....+ ..-++|. .+|..
T Consensus 261 ~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~-~~ee~ 320 (525)
T 1tf7_A 261 VRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILF-AYEES 320 (525)
T ss_dssp CEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEE-ESSSC
T ss_pred ceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEE-EEeCC
Confidence 34678876666543 78999999999999999999999999876543 2323443 44443
No 105
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.39 E-value=0.06 Score=61.77 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=45.7
Q ss_pred ccccccceeeecccc-ccccceeeeecCCCCChhHHHHHHHHhhcC-CCeEEEEEeeccchhhH
Q psy210 239 EPLLTGIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTIINQKN-KNVICIYVCIGQKISSL 300 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p-igrGqr~~I~g~~g~GKt~l~l~~i~~~~~-~~~~~V~~~iGer~~ev 300 (915)
.-+.||+..+|.++- +-+|+-+.|.|++|+|||+++++...+... .+..|+|....+..+++
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l 247 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQL 247 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHH
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 467899999999983 456999999999999999998877666432 23335566665555443
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.34 E-value=0.11 Score=57.04 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=50.7
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~~~a 763 (915)
-+.|.|++|+|||+|+..+++..........+++-|... ....++++.+.+. +... ......+... .-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~--l~~~---~~~~~~~~~~------~~ 113 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY-RNFTAIIGEIARS--LNIP---FPRRGLSRDE------FL 113 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC-CSHHHHHHHHHHH--TTCC---CCSSCCCHHH------HH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC-CCHHHHHHHHHHH--hCcc---CCCCCCCHHH------HH
Confidence 799999999999999999988764321123455544433 3334455543221 1000 0001111111 11
Q ss_pred HHHHHHHHHCCCcEEEEecchhhH
Q psy210 764 LSIAEEFRNSGKDVLLFIDNIYRF 787 (915)
Q Consensus 764 ~~~Ae~f~~~g~~Vl~~~Ds~tr~ 787 (915)
-.+.+++...++.++|++|++..+
T Consensus 114 ~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 114 ALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHHHHHhhcCCeEEEEEECcccc
Confidence 123345555688899999988764
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.20 E-value=0.037 Score=54.60 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=26.2
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.+|+-++|+|++|+|||+|+..++....
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998775
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.16 E-value=0.042 Score=58.55 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=37.0
Q ss_pred cccCccccccceeeecccc-ccccceeeeecCCCCChhHHHHHHHHh
Q psy210 235 ESVNEPLLTGIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 235 ~~~~~~l~TGi~aiD~l~p-igrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
.+..+.+.||+..+|.++. +-+|+-++|.|++|+|||||++.....
T Consensus 7 ~~~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 7 INILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp CCHHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCHHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4456678999999998875 225999999999999999997666543
No 109
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.93 E-value=0.1 Score=59.73 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=45.4
Q ss_pred ccccccceeeecccc-ccccceeeeecCCCCChhHHHHHHHHhhc-CCCeEEEEEeeccchhhH
Q psy210 239 EPLLTGIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTIINQK-NKNVICIYVCIGQKISSL 300 (915)
Q Consensus 239 ~~l~TGi~aiD~l~p-igrGqr~~I~g~~g~GKt~l~l~~i~~~~-~~~~~~V~~~iGer~~ev 300 (915)
..+.||+..+|.++. +-+|+-+.|.|++|+|||+++++...+.. ..+..|+|....+..+++
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l 244 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQL 244 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHH
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHH
Confidence 467899999999983 44699999999999999999988876643 234345676666555443
No 110
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.89 E-value=0.13 Score=57.17 Aligned_cols=95 Identities=8% Similarity=0.076 Sum_probs=54.4
Q ss_pred cCCeeee--ccCCCCChhhHHHHHHHHHHhc----CCcE-EEEEEecCCCchHHHHHHHhhhc-CccccEEEEEEcCCCC
Q psy210 681 KGGKIGL--FGGAGVGKTVNMMELIRNIAIE----HKGC-SVFIGVGERSREGNDFYHEMKES-NVLDKVSLIYGQMNEP 752 (915)
Q Consensus 681 kGQr~~I--~~~~g~GKt~Ll~~i~~~~~~~----~~~~-~v~~~iGer~~ev~e~~~~~~~~-~~~~~~~vv~~t~d~~ 752 (915)
.++-+.| .|++|+|||+|+..+++..... +.+. ++++-|.+. ....+++..+.+. +.- ......+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~------~~~~~~~ 121 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA-PNLYTILSLIVRQTGYP------IQVRGAP 121 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC-CSHHHHHHHHHHHHTCC------CCCTTCC
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC-CCHHHHHHHHHHHhCCC------CCCCCCC
Confidence 4566777 8999999999999999866431 1123 455655443 3344555554321 100 0000111
Q ss_pred hHhHHHHHHHHHHHHHHHHHCCCcEEEEecchhhHH
Q psy210 753 SGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFT 788 (915)
Q Consensus 753 ~~~r~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a 788 (915)
.. ...-.+.+++...++.++|++|++-.+.
T Consensus 122 ~~------~~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 122 AL------DILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HH------HHHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HH------HHHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 11 1122344555556889999999998765
No 111
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.77 E-value=0.34 Score=53.01 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=33.4
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCc
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSR 724 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ 724 (915)
..+|+.++|+|++|+||||++..++...+..... ++++.++-+..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~k-Vllid~D~~r~ 146 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYK-VLIAAADTFRA 146 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCC-EEEEECCCSCH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEeCCCcch
Confidence 4578899999999999999999999877654333 44455555443
No 112
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.42 E-value=0.13 Score=56.41 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=35.8
Q ss_pred ccCccccccceeeecccccc--ccceeeeecCCCCChhHHHHHHHHh
Q psy210 236 SVNEPLLTGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 236 ~~~~~l~TGi~aiD~l~pig--rGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
.+...+.||+..+|.++ -| +|.-+.|.|++|+|||+||++...+
T Consensus 101 ~i~~~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 101 DLTGELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp CSSTTCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred chhhccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45566789999999998 33 4777899999999999998776554
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.41 E-value=0.031 Score=55.50 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=24.8
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.++-+|+.++|+|++|+|||||+..++..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 557889999999999999999999988753
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.07 E-value=0.18 Score=55.95 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=52.3
Q ss_pred ccceeee--ecCCCCChhHHHHHHHHhhcC-------CCeEEEEEeeccchhhHHHHHHHHhc-cCCcceEEEEEecCCC
Q psy210 256 KGQRELI--IGDRQTGKTTIAIDTIINQKN-------KNVICIYVCIGQKISSLINVINKLKY-YNCMDYTVVVAATAAD 325 (915)
Q Consensus 256 rGqr~~I--~g~~g~GKt~l~l~~i~~~~~-------~~~~~V~~~iGer~~ev~~~~~~l~~-~~~~~~tvvv~~~a~~ 325 (915)
.++.+.| .|++|+|||+| +..+++... .+..++|+-+.+.. ...++++.+.+ -+... .....
T Consensus 49 ~~~~~li~i~G~~G~GKT~L-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~------~~~~~ 120 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTL-AKFTVKRVSEAAAKEGLTVKQAYVNAFNAP-NLYTILSLIVRQTGYPI------QVRGA 120 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHH-HHHHHHHHHHHHHHTTCCEEEEEEEGGGCC-SHHHHHHHHHHHHTCCC------CCTTC
T ss_pred CCCEEEEeCcCcCCCCHHHH-HHHHHHHHHHHHhccCCceeEEEEECCCCC-CHHHHHHHHHHHhCCCC------CCCCC
Confidence 4566777 89999999999 455555421 25667787765432 33344444321 11100 00011
Q ss_pred CHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 326 SAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 326 ~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
+ ..+ ..-.+.+++...++.++|++||+-.+.
T Consensus 121 ~-~~~-----~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 121 P-ALD-----ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp C-HHH-----HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred C-HHH-----HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 1 111 122344556566889999999998764
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.01 E-value=0.17 Score=50.31 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.3
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
...+.|.|++|+|||+|+..+++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 34599999999999999999988764
No 116
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.89 E-value=0.31 Score=56.43 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=29.6
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcE
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC 713 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~ 713 (915)
.+.+|+-++|+|++|+|||||+..|+.........|
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V 324 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 324 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE
Confidence 467899999999999999999999998766443333
No 117
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.76 E-value=0.75 Score=52.52 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=52.5
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~~~~ 760 (915)
++..+.+.|++|+||||++..++...+..... ++++.++-......+-+..+.+.. ..-++.......|..-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~k-Vllv~~D~~R~aa~eqL~~~~~~~---gvpv~~~~~~~dp~~i---- 170 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYK-VGVVCSDTWRPGAYHQLRQLLDRY---HIEVFGNPQEKDAIKL---- 170 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCC-EEEEECCCSSTHHHHHHHHHHGGG---TCEEECCTTCCCHHHH----
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCe-EEEEeCCCcchhHHHHHHHHHHhc---CCcEEecCCCCCHHHH----
Confidence 45678999999999999999999988754333 344556654444444444443321 1112222222222221
Q ss_pred HHHHHHHHHHHHCCCcEEEEecch
Q psy210 761 LTGLSIAEEFRNSGKDVLLFIDNI 784 (915)
Q Consensus 761 ~~a~~~Ae~f~~~g~~Vl~~~Ds~ 784 (915)
+-..-++++.+|+||+|+ |.-
T Consensus 171 --~~~al~~a~~~~~DvVII-DTa 191 (443)
T 3dm5_A 171 --AKEGVDYFKSKGVDIIIV-DTA 191 (443)
T ss_dssp --HHHHHHHHHHTTCSEEEE-ECC
T ss_pred --HHHHHHHHHhCCCCEEEE-ECC
Confidence 112235566778998765 643
No 118
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.72 E-value=0.049 Score=55.98 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.0
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+||+|+|||||+..|+...
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 567799999999999999999999988753
No 119
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.72 E-value=0.15 Score=49.52 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.4
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.+.-+.|.|++|+|||+|+..+++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4467799999999999999999998764
No 120
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.69 E-value=0.051 Score=55.16 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=23.9
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++-+|+-++|+|++|+|||||+..|+.-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 78899999999999999999999888654
No 121
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.68 E-value=0.24 Score=54.23 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=53.7
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhhc-------CCCeEEEEEeeccchhh---HHHHHHHHhccCCcceEEEEEecCC
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQK-------NKNVICIYVCIGQKISS---LINVINKLKYYNCMDYTVVVAATAA 324 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~~-------~~~~~~V~~~iGer~~e---v~~~~~~l~~~~~~~~tvvv~~~a~ 324 (915)
+.+..+.|.|++|+|||++ +..+++.. ..+..++|.-+...... ...+.+.+... . ....
T Consensus 42 ~~~~~vll~G~~G~GKT~l-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~-~--------~~~~ 111 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAV-ARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVR-V--------PFTG 111 (387)
T ss_dssp CCCCCEEECBCTTSSHHHH-HHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCC-C--------CSSC
T ss_pred CCCCcEEEECCCCCCHHHH-HHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCC-C--------CCCC
Confidence 5577899999999999999 56666542 22566667765543322 23333334210 0 0001
Q ss_pred CCHHHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhHHHH
Q psy210 325 DSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364 (915)
Q Consensus 325 ~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a~A 364 (915)
.+.. . .--.+.+++...+..+++++|++..+...
T Consensus 112 ~~~~-~-----~~~~l~~~l~~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 112 LSVG-E-----VYERLVKRLSRLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp CCHH-H-----HHHHHHHHHTTSCSEEEEEEETTTHHHHS
T ss_pred CCHH-H-----HHHHHHHHHhccCCeEEEEEccHhhhccc
Confidence 1111 1 11123345555788999999999988653
No 122
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.63 E-value=0.06 Score=54.22 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=24.2
Q ss_pred ccccceeeecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 666 LETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 666 l~TGir~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.++--+.+.+.+..+|+.++|.|++|+|||||+..++...
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45555566777777899999999999999999999998754
No 123
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.61 E-value=0.057 Score=54.10 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.8
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+-+|+-++|+||+|+|||||+..++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999998865
No 124
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.60 E-value=0.068 Score=61.28 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=40.6
Q ss_pred ccccccceeeecccc-cccCCeeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 664 NILETGIKVIDLLCP-FLKGGKIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 664 e~l~TGir~ID~l~p-igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
..+.||+..+|-++. +-+|+-+.|.|+||+|||+|+.+++.+.+.+
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 457899999998774 7799999999999999999999999998764
No 125
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.57 E-value=0.16 Score=54.94 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=24.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
.+.-+.|.|++|+|||+|+..+++....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4677999999999999999999987654
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.48 E-value=0.1 Score=59.56 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=28.2
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHhcCCcE-EEEE
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC-SVFI 717 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~-~v~~ 717 (915)
+.-+.|.|++|+|||+|+..+++.+...+++. ++++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 56799999999999999999998776554444 3444
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.40 E-value=0.43 Score=52.37 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=49.3
Q ss_pred eeeeecCCCCChhHHHHHHHHhhcC-C-CeEEEEEeeccchhhHHHHHHHHh-ccCCcceEEEEEecCCCCHHHhhhhhh
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQKN-K-NVICIYVCIGQKISSLINVINKLK-YYNCMDYTVVVAATAADSAAEQYISPY 335 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~~~-~-~~~~V~~~iGer~~ev~~~~~~l~-~~~~~~~tvvv~~~a~~~~~~r~~~~~ 335 (915)
.++|.|++|+|||++ +..+++... . +..++|.-+.... ....+++.+. .-+.. ......+. ..
T Consensus 46 ~~li~G~~G~GKTtl-~~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~~l~~~------~~~~~~~~-~~----- 111 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT-LRKLWELYKDKTTARFVYINGFIYR-NFTAIIGEIARSLNIP------FPRRGLSR-DE----- 111 (389)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHTTSCCCEEEEEETTTCC-SHHHHHHHHHHHTTCC------CCSSCCCH-HH-----
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhhhcCeeEEEEeCccCC-CHHHHHHHHHHHhCcc------CCCCCCCH-HH-----
Confidence 799999999999999 567776532 2 4556677655433 2233333321 11110 00001111 11
Q ss_pred hhhhhHHHHHhcCCcEEEEeccchhH
Q psy210 336 TGCTIGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 336 ~a~tiAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
.--.+.+++...+..++|++|++...
T Consensus 112 ~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 112 FLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHHHHHHHhhcCCeEEEEEECcccc
Confidence 11123345556688899999998876
No 128
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.33 E-value=0.4 Score=48.09 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=25.5
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
-+|+-+.|.|++|+|||||+..++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999998765
No 129
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.33 E-value=0.16 Score=59.76 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=52.1
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH---HhcCCcEEEEEEecCCCchHHHHHHHhhhc-CccccEEEEEEcCCCChHhH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI---AIEHKGCSVFIGVGERSREGNDFYHEMKES-NVLDKVSLIYGQMNEPSGNR 756 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~---~~~~~~~~v~~~iGer~~ev~e~~~~~~~~-~~~~~~~vv~~t~d~~~~~r 756 (915)
..+-++|.|++|+|||+|+.++++.. ....++.+.++-+++.... ++...+.+- ..+... ....+.++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~--~~~~~l~~l~~~l~~~---~~~~~~~~~~- 219 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS--GLLMKLQNLCTRLDQD---ESFSQRLPLN- 219 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHH--HHHHHHHHHHHHHCSS---CCSCSSCCCS-
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchH--HHHHHHHHHHHHhccc---cccccCCCCC-
Confidence 45678999999999999999988642 2223455677767665322 233322210 000000 0000111110
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEecchhh
Q psy210 757 LRVALTGLSIAEEFRNSGKDVLLFIDNIYR 786 (915)
Q Consensus 757 ~~~~~~a~~~Ae~f~~~g~~Vl~~~Ds~tr 786 (915)
. ....-.+.+.+.+.++.+|||+||+..
T Consensus 220 ~--~~~~~~l~~~l~~~~~~~LLVLDdv~~ 247 (591)
T 1z6t_A 220 I--EEAKDRLRILMLRKHPRSLLILDDVWD 247 (591)
T ss_dssp H--HHHHHHHHHHHHHTCTTCEEEEEEECC
T ss_pred H--HHHHHHHHHHHccCCCCeEEEEeCCCC
Confidence 0 011223445566667899999999953
No 130
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.31 E-value=0.1 Score=61.32 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=36.6
Q ss_pred CeeeeccCCCCChhhHHHHHHH---HHHhcCCcEEEEEEecCCC-chHHHHHHHhh
Q psy210 683 GKIGLFGGAGVGKTVNMMELIR---NIAIEHKGCSVFIGVGERS-REGNDFYHEMK 734 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~---~~~~~~~~~~v~~~iGer~-~ev~e~~~~~~ 734 (915)
.-++|.|..|+|||+|+..+++ .....+-+.++|+-+.+.. ..+.++.+.+.
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 5689999999999999999986 2223445788888777654 24455555543
No 131
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.29 E-value=0.07 Score=61.17 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=49.1
Q ss_pred Cccccccceeeecccc-ccccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccchhhHH
Q psy210 238 NEPLLTGIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLI 301 (915)
Q Consensus 238 ~~~l~TGi~aiD~l~p-igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer~~ev~ 301 (915)
..-+.||+..+|.++. +-+|+-+.|.|.+|+|||+++++...+....+..|+|....+..+++.
T Consensus 177 ~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~ 241 (444)
T 3bgw_A 177 ITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENI 241 (444)
T ss_dssp CCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHH
T ss_pred CCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHH
Confidence 3467899999999985 446999999999999999999888776543355566776666655444
No 132
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.12 E-value=0.52 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=21.7
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
..-++|.|++|||||+|+..+++..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4568999999999999999998864
No 133
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.07 E-value=0.06 Score=56.23 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=28.3
Q ss_pred eee-cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 672 VID-LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 672 ~ID-~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+++ .=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 443 3468899999999999999999999887753
No 134
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.06 E-value=0.18 Score=55.22 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=52.9
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhhcC---C-CeEEEEEeeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHh
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQKN---K-NVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQ 330 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~~~---~-~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r 330 (915)
..++-++|.|++|+|||+| +..+++... . +..++|.-+.... ....++..+.+. +... ......+.. .
T Consensus 43 ~~~~~vli~G~~G~GKTtl-~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~--l~~~---~~~~~~~~~-~ 114 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAV-VKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLES--LDVK---VPFTGLSIA-E 114 (386)
T ss_dssp CCCCCEEEEECTTSSHHHH-HHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTT--TSCC---CCSSSCCHH-H
T ss_pred CCCCeEEEECCCCCCHHHH-HHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHH--hCCC---CCCCCCCHH-H
Confidence 4578899999999999999 566666421 1 4556677665433 333444443221 1000 000001111 1
Q ss_pred hhhhhhhhhhHHHHHhcCCcEEEEeccchhHH
Q psy210 331 YISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362 (915)
Q Consensus 331 ~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~a 362 (915)
.--.+.+++...+..++|++|++....
T Consensus 115 -----~~~~l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 115 -----LYRRLVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp -----HHHHHHHHHHTCCSCEEEEEETHHHHH
T ss_pred -----HHHHHHHHHhccCCeEEEEEcChhhhh
Confidence 111233455566779999999998775
No 135
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.89 E-value=0.55 Score=45.35 Aligned_cols=29 Identities=31% Similarity=0.302 Sum_probs=24.5
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
..+.-+.|.|++|+|||+|+..+++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999987643
No 136
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.85 E-value=0.072 Score=54.08 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=26.0
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
..+|+.++|+|++|+|||||+..|+....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999988664
No 137
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.84 E-value=0.063 Score=58.50 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=29.3
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.-+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344678999999999999999999999998866
No 138
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.84 E-value=0.066 Score=55.99 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=27.5
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678899999999999999999998887543
No 139
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.81 E-value=1 Score=51.29 Aligned_cols=39 Identities=21% Similarity=0.049 Sum_probs=29.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEec
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVG 720 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iG 720 (915)
++..+.++|++|+||||++..++...+.....+ .++.++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV-llv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV-GLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE-EEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEecC
Confidence 467789999999999999999999876543333 344444
No 140
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.78 E-value=0.089 Score=56.36 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=32.5
Q ss_pred cccc-cceeeeccc-cccccceeeeecCCCCChhHHHHHHHHh
Q psy210 240 PLLT-GIKSIDSMI-PIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 240 ~l~T-Gi~aiD~l~-pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
-+.| |+.++|.++ .+-+|+-++|.|++|+|||||+......
T Consensus 16 ~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4668 998888776 4567999999999999999996544333
No 141
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.67 E-value=0.78 Score=49.53 Aligned_cols=49 Identities=18% Similarity=0.040 Sum_probs=34.2
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFY 730 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~ 730 (915)
+|..+++.|++|+||||++..++...+..... +.++..+-+.....+.+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~-v~l~~~D~~r~~a~~ql 145 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFK-VGLVGADVYRPAALEQL 145 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCC-EEEEECCCSSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEecCCCCHHHHHHH
Confidence 47888999999999999999999887654333 34455554444444333
No 142
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.67 E-value=0.069 Score=56.26 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.5
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34467889999999999999999999887754
No 143
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.64 E-value=0.065 Score=55.54 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.8
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+-
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3446788999999999999999999988764
No 144
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.64 E-value=0.81 Score=50.17 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=31.4
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE 721 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe 721 (915)
.+|+-++|+|++|+|||||+..++.........+ .+....-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V-~l~g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV-VIAASDT 167 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE-EEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE-EEEeecc
Confidence 5799999999999999999999998776543333 4444443
No 145
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.58 E-value=0.084 Score=51.75 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=27.3
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|.|+.|+|||||+..|+...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999999999876
No 146
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.51 E-value=0.2 Score=57.42 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.3
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.-+.|.|++|||||+|+..|++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999888765
No 147
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.50 E-value=0.72 Score=50.07 Aligned_cols=44 Identities=23% Similarity=0.107 Sum_probs=32.5
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCC
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERS 723 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~ 723 (915)
..+|+-++|+|++|+||||++..++...+.+... +.++.++-+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~k-V~lv~~D~~r 144 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKS-VVLAAADTFR 144 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC-EEEEEECTTC
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCE-EEEEcccccc
Confidence 3467889999999999999999999887654333 4445555443
No 148
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.39 E-value=0.09 Score=61.46 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=36.7
Q ss_pred ccccccceeeeccc--ccccCCeeeeccCCCCChhhHHHHHH-HHHH
Q psy210 664 NILETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELI-RNIA 707 (915)
Q Consensus 664 e~l~TGir~ID~l~--pigkGQr~~I~~~~g~GKt~Ll~~i~-~~~~ 707 (915)
+.+.||+.++|.++ .+-+|+-.+|.|++|+|||||+..++ ..+.
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45788999998664 68899999999999999999999964 4444
No 149
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.38 E-value=0.075 Score=56.64 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.1
Q ss_pred eeeec-ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 671 KVIDL-LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 671 r~ID~-l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.+++. =+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 44543 478899999999999999999999887753
No 150
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.37 E-value=0.076 Score=56.92 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=27.5
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 33468899999999999999999999887753
No 151
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.36 E-value=0.091 Score=55.97 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=26.6
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
.=+.+-+|+.++|+|++|+|||||+..|+-
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999999988775
No 152
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.34 E-value=0.097 Score=52.34 Aligned_cols=29 Identities=31% Similarity=0.258 Sum_probs=24.3
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+.+|..++|.|++|+|||||+..++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999887643
No 153
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.32 E-value=0.075 Score=54.81 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=26.3
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
=+.+-+|+.++|+|++|+|||||+..|+--
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999999887653
No 154
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.30 E-value=0.092 Score=55.31 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=26.7
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
.=+.+-+|+.++|+|++|+|||||+..|+-
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999999988775
No 155
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.29 E-value=0.082 Score=55.92 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=27.1
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+-+|+.++|+|++|+|||||+..|+--
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999999999888753
No 156
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.28 E-value=0.081 Score=56.22 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.0
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999999999887753
No 157
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.27 E-value=0.087 Score=58.68 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=29.6
Q ss_pred eee-ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 671 KVI-DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 671 r~I-D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.++ |.=+.+.+|+.++|+||+|+|||||+..|+--
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 445 45568999999999999999999999988753
No 158
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.22 E-value=0.083 Score=56.00 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=26.9
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+.+|+.++|+|++|+|||||+..|+--
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999999999887743
No 159
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.21 E-value=0.083 Score=56.24 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=27.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 34467889999999999999999999887753
No 160
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.16 E-value=0.083 Score=54.89 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=27.7
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578899999999999999999998887543
No 161
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.10 E-value=0.092 Score=53.04 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.2
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+|+.++|+||+|+|||||+..+....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999998754
No 162
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.05 E-value=0.087 Score=55.16 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=26.8
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+-+|+.++|+|++|+|||||+..|+--
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999999887753
No 163
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.04 E-value=0.088 Score=56.22 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=27.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33467889999999999999999999887754
No 164
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.03 E-value=0.085 Score=56.63 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=27.5
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+--
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34467889999999999999999999887753
No 165
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.03 E-value=0.082 Score=55.43 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=27.0
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3357889999999999999999999988754
No 166
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.01 E-value=0.09 Score=55.79 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=27.0
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457889999999999999999999888754
No 167
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.95 E-value=0.17 Score=55.76 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=32.2
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~ 717 (915)
+.+.+|+.++|+|++|+|||||+..++.........+.|..
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 46889999999999999999999999876654334454443
No 168
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.95 E-value=0.11 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+|+-++|+||+|+|||||+..++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999988753
No 169
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.94 E-value=0.11 Score=55.02 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=30.3
Q ss_pred eeecccccccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 672 VIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 672 ~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+++.++ +-+|+.++|+|++|+|||||+..++.....
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 445555 889999999999999999999999886643
No 170
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.90 E-value=0.09 Score=55.47 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=27.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+--
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34467889999999999999999999887653
No 171
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.86 E-value=0.088 Score=54.21 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=20.1
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHH-HH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELI-RN 705 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~-~~ 705 (915)
.+-+|+-++|+||+|+|||||+..++ ..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999999988 54
No 172
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.83 E-value=0.11 Score=58.40 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.3
Q ss_pred eee-ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 671 KVI-DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 671 r~I-D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.++ |.=+.+.+|+.++|+|++|+|||||+..|+--
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 444 34468899999999999999999999988753
No 173
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.78 E-value=0.11 Score=57.87 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=27.5
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4556788999999999999999999998875
No 174
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.73 E-value=0.11 Score=57.83 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=27.7
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHC
Confidence 4556788999999999999999999998875
No 175
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.72 E-value=0.096 Score=55.36 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=26.9
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3367889999999999999999999887753
No 176
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.69 E-value=0.1 Score=55.60 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=27.0
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+-+|+.++|+|++|+|||||+..|+--
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3467899999999999999999999887753
No 177
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.65 E-value=0.69 Score=50.55 Aligned_cols=90 Identities=8% Similarity=0.007 Sum_probs=54.6
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcC-----CcEE-EEEEecCCC----chHHHHHHHhhhcCccccEEEEEEc
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEH-----KGCS-VFIGVGERS----REGNDFYHEMKESNVLDKVSLIYGQ 748 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~-----~~~~-v~~~iGer~----~ev~e~~~~~~~~~~~~~~~vv~~t 748 (915)
-+++..+.|.|+||||||+++..+++.+.... +++. |++- |..- .....+++.+..+. . +
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c~~~~t~~~~~~~I~~~L~g~~---~------~ 111 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-ALELAGMDALYEKIWFAISKEN---L------C 111 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-TTCCC--HHHHHHHHHHHSCCC-----------
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-ccccCCHHHHHHHHHHHhcCCC---C------C
Confidence 46788899999999999999999999775322 1333 3343 3222 23444555553221 0 1
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHH----CCCcEEEEecchhhHH
Q psy210 749 MNEPSGNRLRVALTGLSIAEEFRN----SGKDVLLFIDNIYRFT 788 (915)
Q Consensus 749 ~d~~~~~r~~~~~~a~~~Ae~f~~----~g~~Vl~~~Ds~tr~a 788 (915)
...+ .-.+-++|.. +++.+++++|.+-++.
T Consensus 112 ~~~~----------~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 112 GDIS----------LEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp CCCC----------HHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred chHH----------HHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 1111 1223455653 4778999999998876
No 178
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.64 E-value=0.11 Score=58.04 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=27.6
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 4456889999999999999999999998875
No 179
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.64 E-value=0.17 Score=50.01 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=25.9
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhhcCCC
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKN 285 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~ 285 (915)
|+++-+|+.++|+|++|+||||+ +..++.....+
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl-~~~La~~~~~g 36 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTI-AEALANLPGVP 36 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHH-HHHHHTCSSSC
T ss_pred ccCCCCCeEEEEECCCCCCHHHH-HHHHHhccCCC
Confidence 56788899999999999999999 67777663333
No 180
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.63 E-value=0.11 Score=57.80 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=27.9
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+--
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 44567889999999999999999999988753
No 181
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.63 E-value=0.23 Score=47.93 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=25.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+|+-++|+|++|+|||+|+..++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999987653
No 182
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.53 E-value=0.12 Score=52.04 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccc-hhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhh
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQK-ISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGC 338 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer-~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~ 338 (915)
++|.|++|+|||++|.+.. .. . ..++|..-++. ..|..+-+...+..... ++.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la-~~-~--~~~~yiaT~~~~d~e~~~rI~~h~~~R~~----------------~w~tiE~p~ 61 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-GD-A--PQVLYIATSQILDDEMAARIQHHKDGRPA----------------HWRTAECWR 61 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-CS-C--SSEEEEECCCC------CHHHHHHHTSCT----------------TEEEECCSS
T ss_pred EEEECCCCCcHHHHHHHHH-hc-C--CCeEEEecCCCCCHHHHHHHHHHHhcCCC----------------CcEEEEcHh
Confidence 5799999999999975544 33 2 23578888775 33343333333222111 122222223
Q ss_pred hhHHHHHhc--CCcEEEEeccchhHHHHH
Q psy210 339 TIGEYFRDL--GQDCLIIYDDLTKHAWAY 365 (915)
Q Consensus 339 tiAEy~r~~--g~~Vlv~~Ddltr~a~A~ 365 (915)
.+++.+.+. ..+ +|++|++|-|...+
T Consensus 62 ~l~~~l~~~~~~~~-~VLvDclt~wl~n~ 89 (180)
T 1c9k_A 62 HLDTLITADLAPDD-AILLECITTMVTNL 89 (180)
T ss_dssp CGGGTSCTTSCTTC-EEEEECHHHHHHHH
T ss_pred hHHHHHHhhcccCC-eEEEcCHHHHHHHH
Confidence 344444332 124 79999999998654
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.45 E-value=0.14 Score=51.39 Aligned_cols=29 Identities=28% Similarity=0.147 Sum_probs=24.3
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+.+|..+.|.|++|+||||++..++...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999999765
No 184
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.40 E-value=0.12 Score=57.84 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=28.0
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+--
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 45568899999999999999999999988753
No 185
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.39 E-value=0.12 Score=53.99 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=24.6
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+.+|..++|.||+|+|||||+..++...
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999887643
No 186
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.38 E-value=0.62 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.5
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
|.-++|.|++|+|||+|+..+++.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999998765
No 187
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.34 E-value=0.12 Score=53.08 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=27.4
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcE
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC 713 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~ 713 (915)
+-+|+.++|+|++|+|||||+..|+.- .-....+
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 478999999999999999999988865 4333333
No 188
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.30 E-value=0.1 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.9
Q ss_pred cccccCCeeeeccCCCCChhhHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMME 701 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~ 701 (915)
+.+.+|+-++|+|++|+|||||+..
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 4678999999999999999999994
No 189
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.29 E-value=0.58 Score=45.14 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=20.1
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhh
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+.-+.|.|++|+|||+++ ..+++.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~-~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIV-EGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCCceEEECCCCCCHHHHH-HHHHHH
Confidence 34567899999999999994 555554
No 190
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.19 E-value=0.12 Score=58.12 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=26.9
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
.=+.+-+|+.++|+|++|+|||||+.+|+.
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 335899999999999999999999998875
No 191
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.14 E-value=0.15 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=24.1
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
|++++|+|++|+|||||+..++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999999998765
No 192
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.08 E-value=0.086 Score=53.62 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=24.0
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 248 IDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 248 iD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+..+.....++.+.|.|++|+|||+++ ..+++.
T Consensus 43 l~~~~~~~~~~~~ll~G~~G~GKT~la-~~l~~~ 75 (242)
T 3bos_A 43 LKSAASGDGVQAIYLWGPVKSGRTHLI-HAACAR 75 (242)
T ss_dssp HHHHHHTCSCSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH-HHHHHH
Confidence 333333346889999999999999994 566554
No 193
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.02 E-value=0.1 Score=57.90 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=27.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHc
Confidence 4446789999999999999999999998875
No 194
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.00 E-value=0.24 Score=53.73 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=29.4
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcE
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC 713 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~ 713 (915)
.+.+|+-++|+|++|+|||||+..++.........+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V 131 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 131 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 366899999999999999999999998776543333
No 195
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.94 E-value=0.13 Score=51.89 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=23.8
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.-+|..++|.|++|+|||||+..++...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988754
No 196
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.86 E-value=0.26 Score=53.47 Aligned_cols=31 Identities=32% Similarity=0.288 Sum_probs=27.0
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
-++|+.++|+|++|+|||||+..++......
T Consensus 99 ~~~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 99 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp CCSSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999877644
No 197
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.77 E-value=0.15 Score=56.91 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.3
Q ss_pred ceee-ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 670 IKVI-DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 670 ir~I-D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+.++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhc
Confidence 4455 4447899999999999999999999987765
No 198
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.63 E-value=0.49 Score=53.77 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=35.2
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE---------EecCCCchHHHHHHHhhhcCccccEEEEEE
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI---------GVGERSREGNDFYHEMKESNVLDKVSLIYG 747 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~---------~iGer~~ev~e~~~~~~~~~~~~~~~vv~~ 747 (915)
++++||||||||.|+..+|..+. +++|. .+||..+-++++.+...+ ..-++++.-
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~---~aP~IIfiD 282 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTS-----ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE---NAPSIVFID 282 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHT-----CEEEEEESGGGCCSSSSHHHHHHHHHHHHHHH---TCSEEEEEE
T ss_pred CceECCCCchHHHHHHHHHHHhC-----CCEEEEEHHHhhhccCchHHHHHHHHHHHHHh---cCCcEEEEe
Confidence 99999999999999999887653 23332 245444445554443332 335677754
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.58 E-value=1.3 Score=48.54 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=31.8
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~ 717 (915)
....+|..++|.|++|+|||||+..++.........+.|+.
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34789999999999999999999999886654333454443
No 200
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.49 E-value=0.13 Score=55.46 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.9
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
.=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457889999999999999999999887754
No 201
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.46 E-value=1.3 Score=47.54 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=32.1
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCc
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSR 724 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ 724 (915)
+|+.++++|++|+||||++..++...+..... +.++..+-+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~-v~l~~~d~~~~ 139 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR-PLLVAADTQRP 139 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCC-EEEEECCSSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe-EEEecCCcccH
Confidence 78899999999999999999999877654333 34444554443
No 202
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.45 E-value=0.11 Score=56.70 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=27.6
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34688999999999999999999998887643
No 203
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.45 E-value=0.24 Score=53.67 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=25.6
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+..+|..++|.|++|+|||||+..++....
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999998887553
No 204
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.38 E-value=0.32 Score=49.28 Aligned_cols=40 Identities=18% Similarity=0.029 Sum_probs=29.9
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEe
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGV 719 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~i 719 (915)
..+++.+.|.|++|+|||+|+..+++...... ..++++-+
T Consensus 49 ~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~-~~~~~~~~ 88 (242)
T 3bos_A 49 GDGVQAIYLWGPVKSGRTHLIHAACARANELE-RRSFYIPL 88 (242)
T ss_dssp TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEG
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEH
Confidence 34688999999999999999999998765432 22344433
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.33 E-value=0.16 Score=51.10 Aligned_cols=30 Identities=27% Similarity=0.150 Sum_probs=25.9
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
...+.+|..++|.|++|+|||||+..++..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 445778999999999999999999888754
No 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=89.31 E-value=0.72 Score=57.94 Aligned_cols=100 Identities=10% Similarity=0.106 Sum_probs=53.2
Q ss_pred CCeeeeccCCCCChhhHHHHHHHH--HHhcCCcEEEEEEecCCCchHHHHHHHhhhc-CccccEEEEEEcCCC--ChHhH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRN--IAIEHKGCSVFIGVGERSREGNDFYHEMKES-NVLDKVSLIYGQMNE--PSGNR 756 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~--~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~-~~~~~~~vv~~t~d~--~~~~r 756 (915)
..-++|.|+.|+|||+|+.++++. +....++-++++-+++... ...+...+.+. +.+... +....+. .+...
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d-~~~IL~~Ll~lL~~i~~~--~~~~~d~~~~ip~~ 226 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLR 226 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS-HHHHHHHHHHHHHHHCSS--STTTSCCCSSHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC-HHHHHHHHHHHHhhcCcc--cccccccccCCCCC
Confidence 356899999999999999999863 2222233467777887654 34444444321 000000 0000110 11111
Q ss_pred HHHHHHHHHHHHHHHH-CCCcEEEEecchhh
Q psy210 757 LRVALTGLSIAEEFRN-SGKDVLLFIDNIYR 786 (915)
Q Consensus 757 ~~~~~~a~~~Ae~f~~-~g~~Vl~~~Ds~tr 786 (915)
. ....-.+.+++.. .++++|||+||+..
T Consensus 227 l--eeL~e~Lr~lL~~l~~KRvLLVLDDVwd 255 (1221)
T 1vt4_I 227 I--HSIQAELRRLLKSKPYENCLLVLLNVQN 255 (1221)
T ss_dssp H--HHHHHHHHHHHHHSTTSSCEEEEESCCC
T ss_pred H--HHHHHHHHHHHHhhcCCCEEEEEeCcCh
Confidence 1 1112223344422 58999999999976
No 207
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.29 E-value=0.15 Score=54.26 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=25.1
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
=+.+- |+.++|+|++|+|||||+..|+--
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 35677 999999999999999999888753
No 208
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.24 E-value=0.3 Score=49.16 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=26.2
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+..+|..++|.|++|+|||||+..++....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356789999999999999999999987654
No 209
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.21 E-value=0.1 Score=57.90 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=27.3
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|.=+.+-+|+.++|+|++|+|||||+..|+-
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3446788999999999999999999998875
No 210
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.09 E-value=0.38 Score=52.89 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=23.7
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
..+.-+.|.|++|+|||+|+..+++.+.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3356799999999999999999998764
No 211
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.07 E-value=0.22 Score=49.35 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=24.8
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+..+|..++|.|++|+||||++..++..
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999988875
No 212
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.77 E-value=0.21 Score=50.47 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=23.2
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
++-+|+.++|+|++|+||||| +.+|+...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL-l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV-VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH-HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 688899999999999999999 78877653
No 213
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.75 E-value=0.2 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.4
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+++|+|++|+|||||+..|+...
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998765
No 214
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.72 E-value=0.2 Score=48.58 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.7
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.|..++|.|++|+|||||+..++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999988754
No 215
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.72 E-value=0.27 Score=52.86 Aligned_cols=22 Identities=32% Similarity=0.771 Sum_probs=19.7
Q ss_pred eeeccCCCCChhhHHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+++.||||||||+|+..+++.+
T Consensus 39 lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677999999999999999876
No 216
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.57 E-value=6.5 Score=39.75 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=21.9
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHh
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
|.-+|.-+.|.|++|+||||| +..+..
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL-~~~L~~ 41 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHI-KNALLS 41 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHH-HHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHH-HHHHHh
Confidence 445788999999999999999 566664
No 217
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.51 E-value=0.23 Score=50.53 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.3
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.-+|.-+.|.||+|+|||||+..++..
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4558999999999999999999988865
No 218
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.43 E-value=0.36 Score=53.72 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=27.5
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
+.+|+.++|+|++|+|||||+..|+......
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 5679999999999999999999999877644
No 219
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.34 E-value=0.21 Score=51.47 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.4
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+-+|+-++|+||+|+|||||+..++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4579999999999999999999887653
No 220
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.25 E-value=1.9 Score=48.88 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=32.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREG 726 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev 726 (915)
+|+.++++|++|+||||++..++...+..... +.++.++-+..-.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~-Vllvd~D~~r~aa 141 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR-PLLVAADTQRPAA 141 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCC-EEEEECCSSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe-EEEeeccccCchh
Confidence 57788999999999999999999987654333 3444455444333
No 221
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.18 E-value=0.27 Score=57.75 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.9
Q ss_pred eeecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 672 VIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 672 ~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+++.+..+.+|+.++|+|++|+|||||+..|+-
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 566666789999999999999999999988774
No 222
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.14 E-value=1.4 Score=45.69 Aligned_cols=124 Identities=19% Similarity=0.112 Sum_probs=65.9
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEE--eeccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhh
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYV--CIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYI 332 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~--~iGer~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~ 332 (915)
.+|+-..|.|+.|+||||++++.+.+....+.++++. ..+.| .+ ..+. ..-|.--..+- .
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~-~~i~---srlG~~~~~~~-~------------ 71 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SI-RNIQ---SRTGTSLPSVE-V------------ 71 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GC-SSCC---CCCCCSSCCEE-E------------
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HH-HHHH---HhcCCCccccc-c------------
Confidence 3578888889999999999999888764443333333 45444 21 1111 11122111111 1
Q ss_pred hhhhhhhhHHHHHh---cCCcEEEEeccchhH----HHHHHHHHhhcCCCCC-----CCcCCCchhhhhhhHHhhhhccc
Q psy210 333 SPYTGCTIGEYFRD---LGQDCLIIYDDLTKH----AWAYRQISLLLRRPPG-----REAFPGDVFYLHSRLLERSSKIN 400 (915)
Q Consensus 333 ~~~~a~tiAEy~r~---~g~~Vlv~~Ddltr~----a~A~reis~~~~~~p~-----~~gyp~~~~~~~~~l~ERag~~~ 400 (915)
.....+-+++++ .+.--+|++|.+.-+ .+.++++... + .|. ...|-+..|...+.|++.|-.+.
T Consensus 72 --~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~-g-i~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~ 147 (223)
T 2b8t_A 72 --ESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAEN-G-FVVIISGLDKNFKGEPFGPIAKLFTYADKIT 147 (223)
T ss_dssp --SSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHT-T-CEEEEECCSBCTTSSBCTTHHHHHHHCSEEE
T ss_pred --CCHHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhC-C-CeEEEEeccccccCCcCCCcHHHHHHhheEe
Confidence 011223344443 233347788987644 3344444432 2 211 23566777888899999887764
No 223
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.12 E-value=0.23 Score=49.36 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|+-++|.||+|+|||||+.+++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999988754
No 224
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.06 E-value=0.25 Score=48.51 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.3
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+|+.++|+|++|+||||| +..|++.
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL-~~~i~~~ 61 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHL-AVATLKA 61 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHH-HHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH-HHHHHHH
Confidence 45689999999999999999 5666654
No 225
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.03 E-value=0.23 Score=54.19 Aligned_cols=30 Identities=27% Similarity=0.174 Sum_probs=26.5
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.+.+|+-++|.|++|+|||||+..|+.-..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 368899999999999999999998887654
No 226
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.01 E-value=0.33 Score=61.71 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=29.9
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH---HhcCCcEEEEEEecCC
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI---AIEHKGCSVFIGVGER 722 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~---~~~~~~~~v~~~iGer 722 (915)
..++|.|..|+|||+|+.++++.. .....+.++++-+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 457899999999999999988753 2223566777877764
No 227
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.96 E-value=0.24 Score=48.33 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.6
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-+|..++|+|++|+||||++..++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 358899999999999999999988654
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.72 E-value=0.26 Score=50.48 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=23.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|++|+||||| +.+|+...
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTL-l~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTL-IKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHH-HHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 4567899999999999999999 78887654
No 229
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.69 E-value=0.23 Score=52.97 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=22.7
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+.+| ++|+||+|+|||+|+..++...
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHc
Confidence 34566 9999999999999999888653
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.61 E-value=0.27 Score=49.87 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.6
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-+|.-++|.||+|+|||||+..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 368899999999999999999888653
No 231
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.58 E-value=0.28 Score=48.86 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=22.9
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+-+|+.++|.|++|+||||| +.+|+..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl-~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSL-VRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHH-HHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHH-HHHHHhh
Confidence 45799999999999999999 7777765
No 232
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.56 E-value=0.26 Score=51.41 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|++|+||||| +.+|+..-
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~ 55 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTM-LNIIGCLD 55 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcCC
Confidence 5778899999999999999999 88888753
No 233
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.54 E-value=0.92 Score=47.37 Aligned_cols=30 Identities=23% Similarity=0.046 Sum_probs=25.8
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+..++..+.|.|++|+||||++..++...
T Consensus 27 ~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 27 KSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356678889999999999999999998764
No 234
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.53 E-value=0.26 Score=51.54 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=26.8
Q ss_pred eecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 673 IDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 673 ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
=|.=+.+-+ +.++|+|++|+|||||+..|+--
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 344467889 99999999999999999988753
No 235
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.49 E-value=0.29 Score=47.83 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=24.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+-+|+.++|+|+.|+||||| +.+|+..
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTL-lr~l~g~ 56 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTL-TRGMLQG 56 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHH-HHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHH-HHHHHHh
Confidence 3567899999999999999999 7887764
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.38 E-value=0.25 Score=51.48 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=22.8
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+.+| ++|+|++|+|||+|+..++...
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 34566 9999999999999999988754
No 237
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.37 E-value=0.12 Score=56.28 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=28.4
Q ss_pred eecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 673 IDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 673 ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+|.|.++-+|+..+|+|++|+|||||+..|+..
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 466788889999999999999999999877643
No 238
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.35 E-value=0.12 Score=51.63 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=27.7
Q ss_pred eeeecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 671 KVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 671 r~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
.+++. +++.+|.+++|+|++|+|||||+..++.
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34444 7899999999999999999999977653
No 239
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.28 E-value=0.31 Score=50.57 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++..++|+|++|+|||||+..|++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998754
No 240
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.25 E-value=0.53 Score=47.10 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=26.0
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
.-+|..+.|.|++|+||||++..+++....
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 446889999999999999999999987654
No 241
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=87.17 E-value=0.3 Score=48.97 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=22.4
Q ss_pred cccceeeeccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 242 LTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 242 ~TGi~aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
.|+--..+.+++..+|+.++|.|++|+||||+ +..++..-
T Consensus 14 ~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl-~~~L~~~~ 53 (200)
T 4eun_A 14 GTENLYFQSMMTGEPTRHVVVMGVSGSGKTTI-AHGVADET 53 (200)
T ss_dssp --------------CCCEEEEECCTTSCHHHH-HHHHHHHH
T ss_pred CchhhHHHhhhcCCCCcEEEEECCCCCCHHHH-HHHHHHhh
Confidence 34444555666777899999999999999999 57776543
No 242
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.10 E-value=0.24 Score=54.93 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.5
Q ss_pred cccc--CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 678 PFLK--GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 678 pigk--GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++-+ |++.+|+|++|+|||||+..|+...
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3566 9999999999999999999988764
No 243
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.03 E-value=0.54 Score=46.86 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.3
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+-+.|.|++|+|||+|+..+++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67999999999999999999987754
No 244
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.98 E-value=0.27 Score=51.64 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|++|+||||| +.+|+...
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~ 59 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY 59 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5677899999999999999999 88888754
No 245
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=86.91 E-value=0.29 Score=51.02 Aligned_cols=29 Identities=17% Similarity=0.493 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+-+|+.++|+|++|+||||| +..|+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 54 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSL-LSALLAE 54 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HHHHTTC
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5678899999999999999999 8888875
No 246
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.86 E-value=0.27 Score=52.28 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+-+|+.++|+|++|+||||| +.+|+..
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl 60 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTL-LRLLTGY 60 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHH-HHHHTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcC
Confidence 5688899999999999999999 7888864
No 247
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.84 E-value=2.9 Score=42.74 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=35.1
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE 735 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~ 735 (915)
+|--+.|.|++|+||||++..++...... ...|+..---.+.+..+.++++..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~v~~~~~p~~~~~g~~i~~~l~ 57 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER--GIEVQLTREPGGTPLAERIRELLL 57 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcccccCCCCCHHHHHHHHHHh
Confidence 57788999999999999999999887643 333332221223455555665543
No 248
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.83 E-value=0.35 Score=57.55 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=28.5
Q ss_pred eeecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 672 VIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 672 ~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
.++.+..+.+|+.++|+|++|+|||||+..|+-
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhc
Confidence 455566788999999999999999999998875
No 249
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.82 E-value=0.32 Score=49.41 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+++|.|++|+||||++..++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998754
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.64 E-value=0.89 Score=49.03 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=35.4
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHE 732 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~ 732 (915)
.+|+.++++|+.|+||||++..++.........-+.++..+-......+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~ 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKT 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHH
Confidence 36889999999999999999999987764222233444444443334444443
No 251
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.63 E-value=0.3 Score=47.91 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=23.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+|..+.+.|++|+||||++..++...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999998754
No 252
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.52 E-value=0.3 Score=50.66 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=26.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|+.|+||||| +.+|+..-
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~ 58 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSL-LMMIMGEL 58 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5677899999999999999999 88888753
No 253
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.48 E-value=0.68 Score=49.99 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=25.4
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhhc-CCCeEEEEEee
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQK-NKNVICIYVCI 293 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~~-~~~~~~V~~~i 293 (915)
.+.-+.|.|++|+|||+| +..|++.. ..+..++|.-+
T Consensus 36 ~~~~lll~G~~GtGKT~l-a~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHL-LQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHH-HHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHHHCCCEEEEEEH
Confidence 456789999999999999 57777653 11333455543
No 254
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.48 E-value=1.5 Score=51.27 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=25.8
Q ss_pred ccceeeeecCCCCChhHHHHHHHHh-----hcCCCeEEEEEeeccc
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIIN-----QKNKNVICIYVCIGQK 296 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~-----~~~~~~~~V~~~iGer 296 (915)
...-++|.|+.|+|||+||.+...+ ....+. ++|+-++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~-v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGG-VHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTC-EEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCc-eEEEECCCC
Confidence 3567889999999999997544321 112232 457767654
No 255
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.46 E-value=0.71 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.1
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.-++|.|++|||||+|+..+++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 469999999999999999987764
No 256
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.46 E-value=0.29 Score=51.13 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+-+|+.++|+|++|+||||| +.+|+..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 51 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTI-FSLLERF 51 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHH-HHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 4678899999999999999999 8888875
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.42 E-value=0.36 Score=48.60 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=25.0
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+|.-+.|.|++|+|||||+..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999999988754
No 258
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.39 E-value=0.31 Score=51.55 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=26.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|+.|+||||| +.+|+...
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTL-lk~l~Gl~ 65 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTT-LRIISTLI 65 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5678899999999999999999 88888754
No 259
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.38 E-value=0.26 Score=56.67 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.3
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|++++|+|++|+|||||+..|+...
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33556799999999999999999999988744
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.38 E-value=0.29 Score=50.53 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|++|+||||| +.+|+..-
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~ 54 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTL-LYILGLLD 54 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5677899999999999999999 88888753
No 261
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.25 E-value=0.34 Score=57.66 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=29.0
Q ss_pred eeecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 672 VIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 672 ~ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+++.+..+-+|+.++|+|++|+|||||+..|+-
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhC
Confidence 566666789999999999999999999988764
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.20 E-value=0.29 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred CCeeeeccCCCCChhhHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|+-++|+|++|+|||||+..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 56789999999999999999975
No 263
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.15 E-value=0.65 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.7
Q ss_pred eeeccCCCCChhhHHHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+++.||||||||.|+..+|..+.
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999987753
No 264
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=86.14 E-value=0.58 Score=46.71 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=27.5
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE-EecCC
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI-GVGER 722 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~-~iGer 722 (915)
+|+-..|.|++|+||||++.+++++.......+.++- .++.|
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r 44 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSR 44 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC----
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccc
Confidence 4778889999999999999888887654323333332 34443
No 265
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.10 E-value=0.97 Score=43.52 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=19.9
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhh
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
..+..+.|.|++|+|||+++ ..+++.
T Consensus 41 ~~~~~vll~G~~G~GKT~la-~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIV-EGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHH-HHHHHH
T ss_pred CCCCceEEECCCCCCHHHHH-HHHHHH
Confidence 33567889999999999994 555554
No 266
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.09 E-value=0.89 Score=43.11 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.9
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+.-+.|.|++|||||+++..+.+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999998887643
No 267
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.07 E-value=0.73 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred eeeccCCCCChhhHHHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
++++||||||||.|+..+|..+.
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHT
T ss_pred eEEeCCCCCCHHHHHHHHHHhhC
Confidence 89999999999999999887653
No 268
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.06 E-value=0.48 Score=50.09 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=26.4
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|++|+||||| +.+|+...
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~ 70 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTI-AKLLYRFY 70 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhccC
Confidence 5677899999999999999999 88888753
No 269
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=86.03 E-value=0.36 Score=48.78 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.7
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
..+|+.++|+|++|+||||| +..|+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl-~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTL-SNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHH-HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH-HHHHHHH
Confidence 36799999999999999999 5666653
No 270
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.02 E-value=0.58 Score=45.80 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+|..+.|.|++|+||||++..++....
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998764
No 271
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.01 E-value=0.64 Score=46.54 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.5
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
.-+|-.+.|.|++|+||||++..++.....
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446788999999999999999999987654
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.98 E-value=0.34 Score=51.31 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=26.9
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
=+.+-+|+.++|+|++|+||||| +.+|+..-
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~ 56 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTF-LRCINFLE 56 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 35678899999999999999999 88888753
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.79 E-value=0.34 Score=51.79 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=26.9
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
=+.+-+|+.++|+|++|+||||| +.+|+..-
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTL-l~~l~Gl~ 58 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTL-FQNFNGIL 58 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHHcCC
Confidence 35788899999999999999999 88888753
No 274
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.77 E-value=0.33 Score=51.37 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=22.8
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+.+| ++|+|++|+|||+|+..++...
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 34566 9999999999999999988754
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.76 E-value=0.37 Score=50.88 Aligned_cols=30 Identities=40% Similarity=0.635 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|+.|+||||| +.+|+..-
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~ 57 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTL-INVITGFL 57 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEEeCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5678899999999999999999 88888753
No 276
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=85.73 E-value=0.23 Score=53.68 Aligned_cols=31 Identities=39% Similarity=0.471 Sum_probs=26.8
Q ss_pred eecccccccCCeeeeccCCCCChhhHHHHHH
Q psy210 673 IDLLCPFLKGGKIGLFGGAGVGKTVNMMELI 703 (915)
Q Consensus 673 ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~ 703 (915)
||-|..+-+|+..+++|++|+|||||+..|+
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 3555666779999999999999999999888
No 277
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.71 E-value=0.72 Score=50.38 Aligned_cols=89 Identities=8% Similarity=0.020 Sum_probs=54.1
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhhc----C----CCeEEEEEeecc---chhhHHHHHHHHhccCCcceEEEEEec
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQK----N----KNVICIYVCIGQ---KISSLINVINKLKYYNCMDYTVVVAAT 322 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~~----~----~~~~~V~~~iGe---r~~ev~~~~~~l~~~~~~~~tvvv~~~ 322 (915)
-++|..+.|.|++|||||++ ...++++- . .++.+|+.-|-. ....+..+++.+..... +
T Consensus 42 ~~~~~~lli~GpPGTGKT~~-v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~---------~ 111 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQL-VNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL---------C 111 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHH-HHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC-----------
T ss_pred CCCCCeEEEECCCCCCHHHH-HHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC---------C
Confidence 36788899999999999999 45555531 1 145566665433 23455566666643210 0
Q ss_pred CCCCHHHhhhhhhhhhhhHHHHHh----cCCcEEEEeccchhHH
Q psy210 323 AADSAAEQYISPYTGCTIGEYFRD----LGQDCLIIYDDLTKHA 362 (915)
Q Consensus 323 a~~~~~~r~~~~~~a~tiAEy~r~----~g~~Vlv~~Ddltr~a 362 (915)
... ..-.+-++|.. .+..++|++|.+-++.
T Consensus 112 ~~~----------~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 112 GDI----------SLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp CCC----------CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred chH----------HHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 111 11233455553 5778999999998876
No 278
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.65 E-value=1.7 Score=47.80 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.-++|.|++|||||+|+..+++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 348999999999999999998876
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.64 E-value=0.37 Score=51.22 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=26.9
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
=+.+-+|+.++|+|+.|+||||| +.+|+...
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTL-lk~l~Gl~ 74 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTF-LRCLNLLE 74 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEEcCCCEEEEEcCCCCcHHHH-HHHHHcCC
Confidence 35677899999999999999999 88888754
No 280
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.59 E-value=0.66 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.5
Q ss_pred eeeeccCCCCChhhHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-++++||||||||.|+..+|..+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999888765
No 281
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=85.57 E-value=0.73 Score=45.36 Aligned_cols=29 Identities=31% Similarity=0.218 Sum_probs=25.6
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
-+|..+.|.|.+|+||||++..++.....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46888999999999999999999987754
No 282
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.53 E-value=3.2 Score=42.94 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=52.5
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcC--CcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCChHhHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEH--KGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL 757 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~--~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~~r~ 757 (915)
-+|--+-|.|++|+||||++..++......+ +...|+..--.++.+..+.++++...+ +.+| +.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~------------~~~~--~~ 88 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ------------PMDL--ET 88 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS------------CCCH--HH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC------------CCCH--HH
Confidence 4788999999999999999999998775430 022333322233445555566654333 1122 12
Q ss_pred HHHHHHHHHHHHHH-------HCCCcEEEEecchhhHHHhhh
Q psy210 758 RVALTGLSIAEEFR-------NSGKDVLLFIDNIYRFTLAGT 792 (915)
Q Consensus 758 ~~~~~a~~~Ae~f~-------~~g~~Vl~~~Ds~tr~a~A~r 792 (915)
.+.+.+...++.+. ++|+ .||+|.-+-=.-||.
T Consensus 89 ~~llf~a~R~~~~~~~i~p~l~~g~--~VI~DRy~~S~~ayq 128 (227)
T 3v9p_A 89 EALLMFAGRREHLALVIEPALARGD--WVVSDRFTDATFAYQ 128 (227)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTC--EEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--EEEEeccHhHHHHHh
Confidence 23334445555544 3465 567786554444553
No 283
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=85.49 E-value=1.2 Score=48.43 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=21.1
Q ss_pred eeeccCCCCChhhHHHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.++.|++|+|||+++..+++.+.
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHHHHh
Confidence 78899999999999999999764
No 284
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.45 E-value=0.85 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.8
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+..+++.||||||||+|+..+++.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 45699999999999999999998764
No 285
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.43 E-value=0.33 Score=46.78 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.3
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhh
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+|+.++|.|++|+|||+| +.++++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL-~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL-LQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHH
Confidence 899999999999999999 6777764
No 286
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.41 E-value=0.74 Score=46.52 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.1
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+|.-++|.|++|+||||| +.+++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl-~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV-REAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHH-HHHHHHST
T ss_pred CCcEEEEECcCCCCHHHH-HHHHHhhC
Confidence 588899999999999999 67777653
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.40 E-value=0.4 Score=50.36 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+-+|+.++|+|++|+||||| +.+|+..
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTL-lk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTL-GKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHH-HHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5688899999999999999999 8888874
No 288
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=85.39 E-value=0.39 Score=50.35 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.2
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-+|..++|.|++|+|||||+..+++.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999999998654
No 289
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.35 E-value=0.37 Score=51.61 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=26.9
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
=+.+-+|+.++|+|+.|+||||| +.+|+..-
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~ 71 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTL-LNILNAYE 71 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred eEEEcCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 35678899999999999999999 88888753
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.34 E-value=0.39 Score=51.20 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=26.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|++|+||||| +.+|+...
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTL-lk~l~Gl~ 69 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTV-AALLQNLY 69 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5678899999999999999999 88888754
No 291
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.30 E-value=0.38 Score=50.18 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|+.|+||||| +..|+...
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~ 56 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTT-LSAIAGLV 56 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5677899999999999999999 88888753
No 292
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.29 E-value=0.38 Score=53.51 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=28.3
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 249 D~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
|.=+.+-+|+.++|+|++||||||| +.+|+..-
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~ 54 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTL-LRCLAGFE 54 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHH-HHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCchHHHH-HHHHhcCC
Confidence 3445788899999999999999999 89998754
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.27 E-value=0.36 Score=52.51 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=27.0
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 250 ~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
.-+.+-+|++++|+|++|+||||| +..|+..-
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTL-l~lL~gl~ 150 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSML-CNSLIHFL 150 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHH-HHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHH-HHHHhhhc
Confidence 346788899999999999999999 67777654
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.26 E-value=0.41 Score=50.81 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=26.0
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+-+|+.++|+|+.|+||||| +.+|+..
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTL-lk~l~Gl 69 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTL-SATLAGR 69 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHH-HHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5678899999999999999999 8888874
No 295
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.26 E-value=2 Score=46.93 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=22.3
Q ss_pred cceeeeecCCCCChhHHHHHHHHhhcCCC
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQKNKN 285 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~~~~~ 285 (915)
|.-++|.|++|+|||++ ...+++....+
T Consensus 70 ~~~vLl~GppGtGKT~l-a~~la~~l~~~ 97 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI-AMGMAQALGPD 97 (368)
T ss_dssp TCEEEEEESTTSSHHHH-HHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHhccc
Confidence 56799999999999999 57777764443
No 296
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.21 E-value=0.36 Score=57.13 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=28.2
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.=+.+-+|+.++|+|++|+|||||+..++.-..
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 335688999999999999999999998887543
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.13 E-value=0.6 Score=52.07 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=27.0
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+-+|+.++|+|++|+|||||+..++.....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 678999999999999999999999987654
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.06 E-value=0.4 Score=50.51 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=26.9
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
=+.+-+|+.++|+|+.|+||||| +.+|+...
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~ 50 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTL-LARMAGMT 50 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 35678899999999999999999 88888753
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.04 E-value=0.34 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.1
Q ss_pred ccccccceeeeecCCCCChhHHHHH
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAID 276 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~ 276 (915)
+.+-+|+.++|+|++|+||||| +.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl-~~ 27 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTF-AK 27 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHH-HH
T ss_pred ccCCCCEEEEEECCCCCCHHHH-HH
Confidence 3567899999999999999999 45
No 300
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=84.98 E-value=1 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.-++|.|++|||||+|+..+++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 458999999999999999988764
No 301
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.92 E-value=0.47 Score=47.20 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=23.2
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
.+.+|..++|.|++|+||||+ +.+++..-
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl-~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTV-RKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHH-HHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHH-HHHHHHhh
Confidence 356799999999999999999 67777653
No 302
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.80 E-value=0.42 Score=50.68 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=26.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|+.|+||||| +.+|+...
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTL-l~~i~Gl~ 57 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTL-LQIVAGLI 57 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 5788899999999999999999 88888753
No 303
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.74 E-value=0.44 Score=47.95 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=20.5
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhh
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+|+.++|+|++|+||||| +.++...
T Consensus 3 ~g~~i~lvGpsGaGKSTL-l~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL-LKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 588999999999999999 7777764
No 304
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.73 E-value=1.2 Score=50.82 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=25.9
Q ss_pred cceeeeecCCCCChhHHHHHHHHhhc---CCCeEEEEEee
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQK---NKNVICIYVCI 293 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~~---~~~~~~V~~~i 293 (915)
+.-++|.|++|+|||+| +..|++.. ..+..++|.-+
T Consensus 130 ~~~lll~Gp~G~GKTtL-a~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL-LQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHH-HHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEeeH
Confidence 56789999999999999 57777742 33444556543
No 305
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=84.69 E-value=1.3 Score=43.44 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.7
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHh
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
.++|.|++|+||||++..++.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987643
No 306
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=84.67 E-value=0.41 Score=50.43 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=26.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhcC
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQKN 283 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~ 283 (915)
+.+-+|+.++|+|+.|+||||| +.+|+....
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~ 56 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTL-LDLLLGIHR 56 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHH-HHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhCCCC
Confidence 5678899999999999999999 888887543
No 307
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.65 E-value=2.3 Score=45.13 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.0
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+...++|.|++|+|||+++..+++.+.
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 334699999999999999999998764
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.56 E-value=0.55 Score=45.96 Aligned_cols=27 Identities=37% Similarity=0.282 Sum_probs=23.8
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-++..+.|.|++|+||||++..++...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 367889999999999999999998765
No 309
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.53 E-value=0.73 Score=51.11 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=25.9
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
.-+|+.++|.|++|+|||||+..++..+..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 456779999999999999999999886654
No 310
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.48 E-value=0.45 Score=52.82 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.2
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 249 D~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
|.=+.+-+|+.++|+|++|+||||| +.+|+...
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 65 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTI-LRLIAGLE 65 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHH-HHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 3445788899999999999999999 89988754
No 311
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.39 E-value=0.47 Score=52.77 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=28.2
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 249 D~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
|.=+.+-+|+.++|+|++|+||||| +.+|+..-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 53 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTT-LLMLAGIY 53 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHH-HHHHHTSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHH-HHHHHCCC
Confidence 3445778899999999999999999 89988754
No 312
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.36 E-value=0.47 Score=53.19 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=27.6
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 250 ~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
.=+.+-+|+.++|+|++||||||| +.+|+..-
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl~ 53 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTL-LRMIAGLE 53 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHH-HHHHHTSS
T ss_pred eEEEECCCCEEEEEcCCCchHHHH-HHHHHcCC
Confidence 336778899999999999999999 89988753
No 313
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.32 E-value=0.83 Score=47.47 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=86.6
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCc-hHHHHHHHhhhcCccccEEEEEEcCCCChH-hHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSR-EGNDFYHEMKESNVLDKVSLIYGQMNEPSG-NRLRVAL 761 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~-ev~e~~~~~~~~~~~~~~~vv~~t~d~~~~-~r~~~~~ 761 (915)
++.+.+++|||||+++..++........++ +++-++..++ +.+.+++.+.. ..+.++ . -.+.+.. ..+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V-~v~d~D~q~~~~~~al~~gl~~---~~~~~~-~-~~~~~~~e~~l~~-- 79 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRV-MAGVVETHGRAETEALLNGLPQ---QPLLRT-E-YRGMTLEEMDLDA-- 79 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCE-EEEECCCTTCHHHHHHHTTSCB---CCCEEE-E-ETTEEEEECCHHH--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCE-EEEEeCCCCChhHHHHhcCccc---cCccee-e-cCCcccccccHHH--
Confidence 477889999999999999999876543333 4555665444 44455444422 222222 1 1111111 11111
Q ss_pred HHHHHHHHHHHCCCcEEEEecchhhHHHhhhhhhhhcCCCCCCCCCcchhhHHHHHHHHHhcCCCCCceeEEEEEEec--
Q psy210 762 TGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVP-- 839 (915)
Q Consensus 762 ~a~~~Ae~f~~~g~~Vl~~~Ds~tr~a~A~reis~~~ge~p~~~gyp~~l~~~l~~l~ERag~~~~GSiT~i~~v~~~-- 839 (915)
+ +. ...|+ +++|.+-. .|....-.+-.|.++..++++ | +..+.|+-+.
T Consensus 80 -~------L~-~~pdl-vIVDElG~--------------~~~~~~r~~~~~qDV~~~l~s------g-idVitT~Nlqh~ 129 (228)
T 2r8r_A 80 -L------LK-AAPSL-VLVDELAH--------------TNAPGSRHTKRWQDIQELLAA------G-IDVYTTVNVQHL 129 (228)
T ss_dssp -H------HH-HCCSE-EEESCTTC--------------BCCTTCSSSBHHHHHHHHHHT------T-CEEEEEEEGGGB
T ss_pred -H------Hh-cCCCE-EEEeCCCC--------------CCcccchhHHHHHHHHHHHcC------C-CCEEEEcccccc
Confidence 1 11 24565 55686652 112222234578888887763 2 4566666543
Q ss_pred -----------CCCCCCCcccccccccCcEEEe--------eHHHHhcCCCccccCCCCcccc
Q psy210 840 -----------ADDLTDPSPSTTFTHLDSTIVL--------SRQIAELGIYPAIDPLESYSKQ 883 (915)
Q Consensus 840 -----------~~d~~dpi~~~~~~i~dg~ivL--------sr~La~~g~~PAIdv~~S~SR~ 883 (915)
+--..+-|||.++.--|- |+| -+.|++-.+|++-.+-...+.+
T Consensus 130 esl~d~v~~itg~~v~e~vpd~~~~~a~~-v~lvD~~p~~l~~rl~~g~vy~~~~~~~a~~~~ 191 (228)
T 2r8r_A 130 ESLNDQVRGITGVQVRETLPDWVLQEAFD-LVLIDLPPRELLERLRDGKVYVPEQARAAIDAF 191 (228)
T ss_dssp GGGHHHHHHHHSCCCCSCBCHHHHHTCSE-EEEBCCCHHHHHHHHHTTCCCCTTCCHHHHHHH
T ss_pred ccHHHHHHHHcCCCcCCcCccHHHhhCCe-EEEecCCHHHHHHHHHCCCccChhHHHHHHHhh
Confidence 223346677776655554 444 4557787888876654444443
No 314
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.31 E-value=1 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.0
Q ss_pred eeeeccCCCCChhhHHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
-++++||||||||.|+..+|..+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 389999999999999999887653
No 315
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.23 E-value=0.48 Score=52.77 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=28.1
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHhhcC
Q psy210 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKN 283 (915)
Q Consensus 250 ~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~ 283 (915)
.=+.+-+|+.++|+|++|+||||| +.+|+....
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~~ 54 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTL-LYTIAGIYK 54 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHH-HHHHHTSSC
T ss_pred eEEEECCCCEEEEECCCCchHHHH-HHHHhcCCC
Confidence 345678899999999999999999 899987543
No 316
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.21 E-value=0.81 Score=46.99 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=26.8
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhcC
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQKN 283 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~ 283 (915)
+.+-+|+.++|+|+.|+||||| +.+|+....
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTL-lk~l~Gl~~ 60 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTL-LKTISTYLK 60 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHH-HHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCCC
Confidence 4677899999999999999999 888887543
No 317
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.20 E-value=0.69 Score=46.50 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=45.8
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeecc--chh----------hHHHHHHHHhccCCcceEEEEEecCCCCH
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQ--KIS----------SLINVINKLKYYNCMDYTVVVAATAADSA 327 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGe--r~~----------ev~~~~~~l~~~~~~~~tvvv~~~a~~~~ 327 (915)
+.|.||+|+||||| ++.+.......+....-..-. |.. .-.+|.+...+...+++..+.
T Consensus 4 IVi~GPSG~GK~Tl-~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~-------- 74 (186)
T 1ex7_A 4 IVISGPSGTGKSTL-LKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFS-------- 74 (186)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET--------
T ss_pred EEEECCCCCCHHHH-HHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEc--------
Confidence 45899999999999 566665433333211111111 111 124666666666656554431
Q ss_pred HHhhhhhhhhhhhHH--HHHhcCCcEEEEec
Q psy210 328 AEQYISPYTGCTIGE--YFRDLGQDCLIIYD 356 (915)
Q Consensus 328 ~~r~~~~~~a~tiAE--y~r~~g~~Vlv~~D 356 (915)
--+.|++..+ ...++|++|++-+|
T Consensus 75 -----g~~YGt~~~~v~~~l~~g~~vil~id 100 (186)
T 1ex7_A 75 -----GNYYGSTVASVKQVSKSGKTCILDID 100 (186)
T ss_dssp -----TEEEEEEHHHHHHHHHHTSEEEEECC
T ss_pred -----CceeeeecceeeehhhCCCEEEecCC
Confidence 2235555443 33467999888776
No 318
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.19 E-value=0.45 Score=48.65 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.2
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+-+|+.++|+|+.|+||||| +.+|+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTL-l~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYL-AMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHH-HHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 46799999999999999999 7777653
No 319
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.17 E-value=0.48 Score=52.94 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=27.7
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 250 ~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
.=+.+-+|+.++|+|++|+||||| |.+|+..-
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 61 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTT-LRMIAGLE 61 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHH-HHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCChHHHH-HHHHHcCC
Confidence 345778899999999999999999 89998754
No 320
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=83.98 E-value=0.32 Score=54.06 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=27.2
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.+-+|+.++|.|++|+|||||+..++....
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4577999999999999999999999887543
No 321
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=83.94 E-value=0.55 Score=46.29 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.6
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhh
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+|..++|+|++|+||||| +..+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL-~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI-KNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 478899999999999999 6777764
No 322
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.87 E-value=0.25 Score=53.39 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=26.6
Q ss_pred eecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 673 IDLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 673 ID~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
||-++.+-+|+..+|+|++|+|||||+..|+.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 34455667799999999999999999987764
No 323
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.86 E-value=0.68 Score=49.24 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=23.4
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhhcCCC
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKN 285 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~ 285 (915)
+.+| ++|+|++|||||+| +.+|++....+
T Consensus 43 ~~~G--vlL~Gp~GtGKTtL-akala~~~~~~ 71 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLL-AKAVANESGLN 71 (274)
T ss_dssp CCSE--EEEESSTTSCHHHH-HHHHHHHTTCE
T ss_pred CCCe--EEEECCCCCcHHHH-HHHHHHHcCCC
Confidence 4456 99999999999999 68888765554
No 324
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=83.80 E-value=1 Score=47.79 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=22.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+...+.|.|++|+|||+++..+++.+.
T Consensus 37 ~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 333599999999999999999998763
No 325
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.77 E-value=0.5 Score=52.79 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=28.2
Q ss_pred eccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 249 D~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
|.=+.+-+|+.++|+|++|+||||| |.+|+..-
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 53 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTT-LRMIAGLE 53 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHH-HHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHH-HHHHHcCC
Confidence 3446788899999999999999999 89988754
No 326
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.75 E-value=0.3 Score=54.26 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=25.3
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|.+....+|+.++|+|++|+|||||+..|+.
T Consensus 207 ~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 207 KPLEEALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHHHHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEEECCCCccHHHHHHHHhc
Confidence 3344456899999999999999999987764
No 327
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=83.72 E-value=4.3 Score=44.56 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=28.3
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEE
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVF 716 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~ 716 (915)
++.-+++|.|.+|+|||||+..++.........+.|+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 4556899999999999999999998775433344443
No 328
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=83.71 E-value=0.87 Score=50.24 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=27.8
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~ 717 (915)
+.+++|+|++|+|||||+..++.........+.|++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 678999999999999999999986654333444444
No 329
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=83.69 E-value=0.45 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.5
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+|.|++|+|++|+|||+|+..++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999888753
No 330
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.66 E-value=3.6 Score=44.78 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=21.4
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHh
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
...+|+.++|.|..|+||||++ ..++.
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~-~~LA~ 127 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSL-AKMAN 127 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHH-HHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 3567899999999999999995 44443
No 331
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.55 E-value=1.2 Score=48.78 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=26.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhhc--------CC-CeEEEEEeecc
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQK--------NK-NVICIYVCIGQ 295 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~~--------~~-~~~~V~~~iGe 295 (915)
.+.-+.|.|++|+|||++ +..++++. +. +..+++.-+..
T Consensus 44 ~~~~vll~G~~G~GKT~l-a~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFV-SKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCEEEEEECTTSSHHHH-HHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCcEEEECCCCCCHHHH-HHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 356799999999999999 46666542 11 55566766543
No 332
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=83.52 E-value=0.94 Score=49.03 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=24.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.++-+.|.|++|+|||+|+..+++...
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999998776
No 333
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.47 E-value=0.59 Score=45.74 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=24.3
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+|..++|.|++|+||||++..++....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 588899999999999999999988664
No 334
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.42 E-value=0.56 Score=47.19 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.9
Q ss_pred cceeeeecCCCCChhHHHHHHHHhh
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
|++++|+|+.|+||||| +.+|+..
T Consensus 1 G~~i~i~G~nG~GKTTl-l~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL-IHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHH-HHHHHHH
T ss_pred CCEEEEECCCCChHHHH-HHHHHhh
Confidence 78999999999999999 7777753
No 335
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=83.37 E-value=0.48 Score=51.07 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=26.5
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|+.++|+|+.|+||||| +.+|+...
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTL-lk~l~Gl~ 88 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSL-LMMIMGEL 88 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcCC
Confidence 5677899999999999999999 88888753
No 336
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.30 E-value=0.58 Score=44.96 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=20.4
Q ss_pred eeeeccCCCCChhhHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+.|.|++|+||||++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 337
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.24 E-value=6.2 Score=45.76 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=25.7
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEE
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSV 715 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v 715 (915)
...+.|+|.+|+||||++..++...+.....+.+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVll 134 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCL 134 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 3468899999999999999999887654333433
No 338
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=83.22 E-value=0.83 Score=49.87 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=23.1
Q ss_pred ceeeeecCCCCChhHHHHHHHHhhcCCCe
Q psy210 258 QRELIIGDRQTGKTTIAIDTIINQKNKNV 286 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~~~~~~~ 286 (915)
+.++|.|++|+||||| +..|++.-+.++
T Consensus 52 ~~~ll~Gp~G~GKTTL-a~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL-AHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHH-HHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHhCCCE
Confidence 6789999999999999 688888655554
No 339
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.14 E-value=3.9 Score=46.45 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=29.0
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHhc-CCcEEEEEEecCCC
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAIE-HKGCSVFIGVGERS 723 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~~-~~~~~v~~~iGer~ 723 (915)
..+.++|..|+||||++..++...+.. ... +.++-++-..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~k-Vllvd~D~~r 141 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKK-VLVVSADVYR 141 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCC-EEEEECCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCe-EEEEecCCCC
Confidence 467788999999999999999988764 333 3444555433
No 340
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.08 E-value=0.51 Score=55.35 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=28.3
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 247 SIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 247 aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+++.+..+-+|++++|+|+.|+||||| +.+|+..
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTL-lk~l~Gl 70 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTA-VKILAGQ 70 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHH-HHHHHTS
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 555555678899999999999999999 7777764
No 341
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=83.04 E-value=0.47 Score=48.66 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=19.0
Q ss_pred cccccceeeeecCCCCChhHHHHHHHH-hh
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTII-NQ 281 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~-~~ 281 (915)
.+-+|+.++|.|++|+||||| +.+++ ..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl-~~~L~~~~ 51 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTV-ANKLLEKQ 51 (231)
T ss_dssp CEECCCEEEEECSCC----CH-HHHHHC--
T ss_pred ccCCCCEEEEECCCCCCHHHH-HHHHHhcC
Confidence 456799999999999999999 78777 53
No 342
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=83.02 E-value=1.2 Score=52.09 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=29.6
Q ss_pred ceeeeecCCCCChhHHHHHHHHh----h--cCCCeEEEEEeeccch-hhHHHHHHH
Q psy210 258 QRELIIGDRQTGKTTIAIDTIIN----Q--KNKNVICIYVCIGQKI-SSLINVINK 306 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~----~--~~~~~~~V~~~iGer~-~ev~~~~~~ 306 (915)
.-++|.|..|+|||+||. .+.+ . ..-+. ++|+-+.+.. ..+.++...
T Consensus 153 ~vv~I~G~gGvGKTtLA~-~v~~~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIAS-QALSKSDQLIGINYDS-IVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp EEEEEECSTTSSHHHHHH-HHHHHCSSTBTTTBSE-EEEEECCCCSTTHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH-HHHHhhhHHHhccCCc-EEEEEECCCCCCCHHHHHHH
Confidence 457899999999999975 4553 2 23344 5677777653 133444443
No 343
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.01 E-value=0.44 Score=50.24 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=26.0
Q ss_pred ccccc---CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLK---GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigk---GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+ |+.+.|+|++|+||||++..++...
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34556 9999999999999999999998754
No 344
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.01 E-value=1.4 Score=49.72 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=24.9
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhhcCCCeE
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~ 287 (915)
-+| +++.|++|||||.| ..++++..+..+.
T Consensus 182 prG--vLL~GPPGTGKTll-AkAiA~e~~~~f~ 211 (405)
T 4b4t_J 182 PKG--VILYGPPGTGKTLL-ARAVAHHTDCKFI 211 (405)
T ss_dssp CCC--EEEESCSSSSHHHH-HHHHHHHHTCEEE
T ss_pred CCc--eEEeCCCCCCHHHH-HHHHHHhhCCCce
Confidence 345 89999999999999 5889988777763
No 345
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.88 E-value=0.61 Score=48.40 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.6
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+.+|..++|.|+.|+||||| +.+|+..
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl-~k~L~~~ 48 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTV-CEKIMEL 48 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHH-HHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHH-HHHHHHH
Confidence 4677899999999999999999 5776653
No 346
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=82.83 E-value=0.48 Score=56.16 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=28.2
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..++.-.
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344678899999999999999999999887643
No 347
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=82.76 E-value=0.46 Score=56.16 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=28.1
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.+-+|+.++|+|++|+|||||+..++.-.
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344578899999999999999999999887643
No 348
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.74 E-value=0.56 Score=52.74 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=26.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+-+|+.++|+|++||||||| +.+|+..
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl 70 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTL-LSAFLRL 70 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHH-HHHHHTC
T ss_pred EEEcCCCEEEEECCCCChHHHH-HHHHhCC
Confidence 4788899999999999999999 8888864
No 349
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.71 E-value=0.91 Score=47.06 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=23.7
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhhcCCCe
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNV 286 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~ 286 (915)
+-+| ++|+|++|||||+| +.+|++......
T Consensus 48 ~~~g--~ll~G~~G~GKTtl-~~~i~~~~~~~~ 77 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHL-ARAVAGEARVPF 77 (254)
T ss_dssp CCSE--EEEECCTTSSHHHH-HHHHHHHTTCCE
T ss_pred CCCe--EEEECCCCCCHHHH-HHHHHHHhCCCE
Confidence 3456 89999999999999 688887755443
No 350
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=82.62 E-value=0.31 Score=48.64 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=26.2
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHh
Q psy210 247 SIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 247 aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
+++. +++.+|.+++|+|++|+||||| +..+..
T Consensus 17 ~l~~-~~~~~~~~v~lvG~~g~GKSTL-l~~l~g 48 (210)
T 1pui_A 17 DIRH-LPSDTGIEVAFAGRSNAGKSSA-LNTLTN 48 (210)
T ss_dssp SGGG-SSCSCSEEEEEEECTTSSHHHH-HTTTCC
T ss_pred CHhH-CCCCCCcEEEEECCCCCCHHHH-HHHHhC
Confidence 4444 7889999999999999999999 555543
No 351
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.60 E-value=0.66 Score=46.23 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=24.4
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+|..+.|.|++|+||||++..++.....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987643
No 352
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=82.59 E-value=0.43 Score=52.87 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=27.6
Q ss_pred ccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 250 ~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
.=+.+-+|+.++|+|++|+||||| +.+|+...
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 50 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLF-LELIAGFH 50 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHH-HHHHHTSS
T ss_pred eEEEEcCCCEEEEECCCCccHHHH-HHHHHcCC
Confidence 335678899999999999999999 89998754
No 353
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.59 E-value=0.72 Score=45.19 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+..+.|.|++|+||||++..+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998765
No 354
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.57 E-value=0.7 Score=44.64 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=22.0
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|-++|.|++|+||||++..++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999998765
No 355
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=82.56 E-value=0.6 Score=46.88 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=21.7
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
.-+|..++|.|+.|+||||| +..|+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl-~~~l~~~ 29 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTL-AQALART 29 (211)
T ss_dssp --CCEEEEEEESTTSSHHHH-HHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHH-HHHHHHH
Confidence 34688999999999999999 6777664
No 356
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.39 E-value=0.67 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred eeeeccCCCCChhhHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 357
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=82.19 E-value=0.61 Score=49.46 Aligned_cols=29 Identities=28% Similarity=0.585 Sum_probs=25.4
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+- |+.++|+|++|+||||| +.+|+...
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTL-lk~l~Gl~ 54 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTL-LRAISGLL 54 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEC-CEEEEEECCCCCCHHHH-HHHHhCCC
Confidence 4667 99999999999999999 88888754
No 358
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.06 E-value=0.67 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred eeeeccCCCCChhhHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+++|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987653
No 359
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=82.04 E-value=0.66 Score=51.69 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=28.4
Q ss_pred eeee-ccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 246 KSID-SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 246 ~aiD-~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
.+++ .=+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTL-lr~i~GL 77 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTL-IRCVNLL 77 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHH-HHHHHTS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHH-HHHHhcC
Confidence 4443 346788899999999999999999 7887764
No 360
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=82.00 E-value=0.51 Score=55.31 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=26.3
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|+|++|+|||||+..|+.-.
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999887643
No 361
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.99 E-value=0.57 Score=49.60 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.7
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 247 SIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 247 aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+++.+. +-+|+.++|.|+.|+||||| +..|+..
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTl-l~~l~g~ 48 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTT-IASMIDY 48 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHH-HHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHH-HHHHHHh
Confidence 344444 77899999999999999999 7777764
No 362
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=81.89 E-value=6 Score=43.81 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.-++|.|++|||||+|+..+++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999887653
No 363
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=81.83 E-value=0.53 Score=55.84 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=26.6
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
=+.+-+|+.++|+|++|+|||||+..++.-
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 356889999999999999999999888764
No 364
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.67 E-value=2.2 Score=42.50 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.1
Q ss_pred eeeeecCCCCChhHHHHHHHHhh
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
-++|.|++|+|||++ +..+++.
T Consensus 47 ~~ll~G~~G~GKT~l-~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI-ARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHH
Confidence 578999999999999 4666654
No 365
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=81.67 E-value=0.61 Score=55.48 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=28.3
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 247 SIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 247 aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+++.+..+-+|+.++|+|+.|+||||| +.+|+..
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTL-lkiL~Gl 140 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTA-VKILAGQ 140 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHH-HHHHTTS
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHH-HHHHhCC
Confidence 556665678899999999999999999 7777754
No 366
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.65 E-value=0.63 Score=58.16 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=27.1
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
.=+.+.+|++++|+|++|+|||||+..|+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445789999999999999999999999984
No 367
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.58 E-value=0.63 Score=46.45 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.5
Q ss_pred eeeeccCCCCChhhHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+++|.|++|+||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998886
No 368
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=81.58 E-value=0.34 Score=53.14 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=26.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.+-+|+.++|.|++|+|||||+..++....
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4567899999999999999999998887543
No 369
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=81.56 E-value=0.54 Score=51.08 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=26.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+.+-+|++++|+|++|+||||| +..|...-
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTL-l~ll~gl~ 104 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTI-LRLLFRFY 104 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCchHHHH-HHHHHcCC
Confidence 5788899999999999999999 78888754
No 370
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.35 E-value=1.6 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.0
Q ss_pred eeeeccCCCCChhhHHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
-+++.||||||||.|+..+|..+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHT
T ss_pred ceEeeCCCCCcHHHHHHHHHhccC
Confidence 489999999999999998887653
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=81.34 E-value=2.1 Score=41.86 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.3
Q ss_pred eeeeccCCCCChhhHHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.++|.|++|+||||++..++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 372
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=81.32 E-value=0.6 Score=52.23 Aligned_cols=30 Identities=20% Similarity=0.037 Sum_probs=26.4
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
..+.+|+.++|.|++|+|||||+..++...
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467889999999999999999999888643
No 373
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.31 E-value=0.81 Score=45.04 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.9
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.++..+.|.|++|+||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998765
No 374
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.23 E-value=0.96 Score=51.29 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=25.3
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
-+|+-++|.|++|+|||||+..++..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 6789999999999999999999987664
No 375
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.22 E-value=2.2 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.4
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.-++|+||+|||||+|+..+++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 458999999999999999998765
No 376
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.06 E-value=7.1 Score=40.52 Aligned_cols=52 Identities=10% Similarity=0.049 Sum_probs=34.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEM 733 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~ 733 (915)
+|.-+.|.|++|+||||++..++......+-.+ +...--..+.+..+.++++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~-~~~~rep~~t~~g~~ir~~ 77 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDH-ITRTREPGGTLLAEKLRAL 77 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCC-EEEEESSCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCe-eeeecCCCCCHHHHHHHHH
Confidence 688899999999999999999998876533221 2222222344555666554
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=81.02 E-value=0.8 Score=47.11 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=23.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhhcC
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQKN 283 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~~~ 283 (915)
-+|+-++|+|++|+||||| +..|.....
T Consensus 14 ~~G~ii~l~GpsGsGKSTL-lk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL-IQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH-HHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHhccCC
Confidence 3589999999999999999 788776543
No 378
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.90 E-value=0.84 Score=45.11 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=21.4
Q ss_pred eeeeccCCCCChhhHHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.+.|.|++|+||||++..+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999998763
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=80.88 E-value=1.4 Score=43.66 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=22.6
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
.++|.|++|+|||||+..++..+...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 57899999999999999999887643
No 380
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.87 E-value=0.86 Score=47.94 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.6
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+.-++|.|++|||||+|+..+++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45669999999999999999988764
No 381
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=80.86 E-value=0.44 Score=52.84 Aligned_cols=31 Identities=35% Similarity=0.448 Sum_probs=27.2
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
=+.+-+|+.++|+|++|+||||| +.+|+...
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 55 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTF-MRIIAGLD 55 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHH-HHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 35678899999999999999999 89988754
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.73 E-value=0.83 Score=45.33 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.2
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+|-.+.|.|++|+||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999988754
No 383
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.66 E-value=1.6 Score=49.56 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.2
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeE
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVI 287 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~ 287 (915)
+++.|++|||||+| ..++++..+..+.
T Consensus 209 iLL~GPPGtGKT~l-akAiA~~~~~~~~ 235 (428)
T 4b4t_K 209 VLLYGPPGTGKTML-VKAVANSTKAAFI 235 (428)
T ss_dssp EEEESCTTTTHHHH-HHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHH-HHHHHHHhCCCeE
Confidence 89999999999999 5889988776653
No 384
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.66 E-value=1.3 Score=43.25 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.5
Q ss_pred eeeeccCCCCChhhHHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
.+.|.|++|+||||++..++....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998765
No 385
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=80.66 E-value=0.9 Score=44.07 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.9
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.-+.|.|++|+||||++..++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999998764
No 386
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=80.66 E-value=0.82 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=19.6
Q ss_pred eeeeecCCCCChhHHHHHHHHhhc
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+++|+|++|+||||| +..|+..-
T Consensus 2 ~i~l~G~nGsGKTTL-l~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL-VKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHh
Confidence 678999999999999 77777653
No 387
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.65 E-value=0.84 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+-.++|.|++|+||||++..++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999988764
No 388
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=80.61 E-value=3.2 Score=44.27 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=39.5
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhhcCccccEEEEEEcCCCCh
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPS 753 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~~~~~~~~~vv~~t~d~~~ 753 (915)
..-++|.|++|||||+|+..+++.... . .+++-+.. .....++...+.+ ..-++.++|.--.+.-+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~---~-~~~~~~~~-~~~~~~l~~~l~~-~~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGV---N-LRVTSGPA-IEKPGDLAAILAN-SLEEGDILFIDEIHRLS 103 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTC---C-EEEECTTT-CCSHHHHHHHHTT-TCCTTCEEEETTTTSCC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC---C-EEEEeccc-cCChHHHHHHHHH-hccCCCEEEEECCcccc
Confidence 357999999999999999999876531 1 22332322 2233444444433 12345677776666544
No 389
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.61 E-value=0.84 Score=48.99 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.2
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-.+.-++|.|++|||||+|+..++...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346779999999999999999988764
No 390
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=80.61 E-value=0.43 Score=56.37 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=27.5
Q ss_pred cccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 675 ~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.=+.+-+|+.++|+|++|+|||||+..++.-.
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34678999999999999999999998877643
No 391
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=80.48 E-value=0.79 Score=45.46 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=19.8
Q ss_pred eeeeccCCCCChhhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+++|+|++|+|||+|+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999888764
No 392
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=80.41 E-value=0.87 Score=44.70 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=23.0
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++..+.|.|++|+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56778999999999999999998765
No 393
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.41 E-value=0.94 Score=45.91 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.2
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+|-++.|.|++|+||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998765
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.36 E-value=0.88 Score=44.55 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.5
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+++|.|++|+||||++..+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998864
No 395
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.32 E-value=1.2 Score=46.91 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=23.7
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhhcCCCe
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNV 286 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~ 286 (915)
+.+| ++|+|++|||||+| +.+|++......
T Consensus 72 ~~~g--vll~Gp~GtGKTtl-~~~i~~~~~~~~ 101 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHL-ARAVAGEARVPF 101 (278)
T ss_dssp CCCE--EEEECCTTSSHHHH-HHHHHHHTTCCE
T ss_pred CCCe--EEEECCCcChHHHH-HHHHHHHcCCCE
Confidence 3456 89999999999999 688887655443
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=80.26 E-value=0.83 Score=46.64 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=22.5
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-++..+.|.|++|+||||++..++...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998754
No 397
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=80.25 E-value=1.4 Score=45.51 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=27.4
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
.+.+|..+.|.|++|+||||++..++.....
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4668999999999999999999999987753
No 398
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.22 E-value=1.6 Score=49.78 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.3
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeE
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVI 287 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~ 287 (915)
+++.||+|||||.| ..++++..+..+.
T Consensus 218 vLLyGPPGTGKTll-AkAiA~e~~~~f~ 244 (434)
T 4b4t_M 218 ALMYGPPGTGKTLL-ARACAAQTNATFL 244 (434)
T ss_dssp EEEESCTTSSHHHH-HHHHHHHHTCEEE
T ss_pred eEEECcCCCCHHHH-HHHHHHHhCCCEE
Confidence 89999999999999 5889988776653
No 399
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.10 E-value=0.77 Score=52.17 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.2
Q ss_pred cccccCCe--eeeccCCCCChhhHHHHHHH
Q psy210 677 CPFLKGGK--IGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 677 ~pigkGQr--~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+.+-+|+. ++|+|++|+|||||+..|+.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 56789999 99999999999999988864
No 400
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.09 E-value=0.92 Score=48.79 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=25.4
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
-.++..++|.|++|+|||||+..|+....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46788999999999999999999888654
No 401
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=80.07 E-value=2 Score=54.44 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=47.1
Q ss_pred ceeeeecCCCCChhHHHHHHHHhh---c--CCCeEEEEEeeccchh--h---HHHHHHHHhccCCcceEEEEEecCCCCH
Q psy210 258 QRELIIGDRQTGKTTIAIDTIINQ---K--NKNVICIYVCIGQKIS--S---LINVINKLKYYNCMDYTVVVAATAADSA 327 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~~---~--~~~~~~V~~~iGer~~--e---v~~~~~~l~~~~~~~~tvvv~~~a~~~~ 327 (915)
..++|.|..|+|||+||.+...+. . ..+. ++|+-+++... . ...+...+...+.... .....
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~ 219 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGG-VHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQ-------RLPLN 219 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTC-EEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCS-------SCCSS
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCe-EEEEEECCcCchHHHHHHHHHHHHhhhhccccc-------CCCCC
Confidence 357899999999999975443321 1 2333 56777776322 1 2223333332221110 00001
Q ss_pred HHhhhhhhhhhhhHHHHHhcCCcEEEEeccchhH
Q psy210 328 AEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKH 361 (915)
Q Consensus 328 ~~r~~~~~~a~tiAEy~r~~g~~Vlv~~Ddltr~ 361 (915)
... ..-.+.++++++++++|||+||+-..
T Consensus 220 ~~~-----~~~~l~~~l~~~~~~~LlvlDd~~~~ 248 (1249)
T 3sfz_A 220 IEE-----AKDRLRVLMLRKHPRSLLILDDVWDP 248 (1249)
T ss_dssp HHH-----HHHHHHHHTSSSSCSCEEEEESCCCH
T ss_pred HHH-----HHHHHHHHHhccCCCEEEEEecCCCH
Confidence 111 11223344445567999999998754
No 402
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=80.05 E-value=0.77 Score=45.41 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.0
Q ss_pred eeeeccCCCCChhhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+++|+|++|+|||||+..++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 403
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=80.01 E-value=5.9 Score=40.43 Aligned_cols=53 Identities=13% Similarity=0.052 Sum_probs=36.0
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC-CCchHHHHHHHhhh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE-RSREGNDFYHEMKE 735 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe-r~~ev~e~~~~~~~ 735 (915)
+|--+.|.|++|+||||++..++......+-. .|+ ..-| .+.+..+.++++..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~-~v~-~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIR-DMV-FTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-CEE-EEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCC-cce-eeeCCCCCHHHHHHHHHHh
Confidence 57778899999999999999999887653210 222 2233 34566677776543
No 404
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.01 E-value=0.88 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.8
Q ss_pred cceeeeecCCCCChhHHHHHHHHhh
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
|.-++|.|++|+||||| +.++...
T Consensus 1 ~~ii~l~GpsGaGKsTl-~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTL-LKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHH-HHHHHHH
T ss_pred CCEEEEECCCCCCHHHH-HHHHHhh
Confidence 45578999999999999 7887754
No 405
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=80.00 E-value=1.5 Score=45.44 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=30.3
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEE-EecCC
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI-GVGER 722 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~-~iGer 722 (915)
.+|+-..|.|++|+||||++.+++++.......+.++- ..+.|
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r 53 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR 53 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch
Confidence 46888889999999999999999988765322333332 45544
No 406
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=80.00 E-value=0.36 Score=52.54 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=28.4
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 248 IDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 248 iD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+|.|.++-+|+..+|+|++|+||||| +.+|...
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTL-ln~L~g~ 196 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSL-LNAISPE 196 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHH-HHHHCC-
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHH-HHHhccc
Confidence 56778888999999999999999999 7887754
No 407
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.99 E-value=2 Score=48.94 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.2
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeE
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVI 287 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~ 287 (915)
+++.|++|||||.| ..++++..+.++.
T Consensus 218 vLL~GPPGtGKTll-AkAiA~e~~~~~~ 244 (437)
T 4b4t_L 218 VLLYGPPGTGKTLL-AKAVAATIGANFI 244 (437)
T ss_dssp EEEESCTTSSHHHH-HHHHHHHHTCEEE
T ss_pred EEEECCCCCcHHHH-HHHHHHHhCCCEE
Confidence 89999999999999 5889988776653
No 408
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.99 E-value=0.88 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.3
Q ss_pred eeeccCCCCChhhHHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++|.|++|||||+|+..+++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 8999999999999999998765
No 409
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=79.93 E-value=0.81 Score=44.58 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=18.6
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++..+.|.|++|+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 67789999999999999999998754
No 410
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=79.88 E-value=0.99 Score=48.01 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+.-++|.|++|||||+|+..+++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456999999999999999999887643
No 411
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.87 E-value=0.87 Score=44.92 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.7
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-++..++|.|++|+||||++..++...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998765
No 412
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.84 E-value=0.86 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.9
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.++|+||+|+|||||+..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999998865
No 413
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=79.61 E-value=0.56 Score=48.26 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=24.4
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
+.-+|.-++|.|+.|+|||||+..++..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999887654
No 414
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.53 E-value=1.1 Score=44.75 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.7
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++-.+.|.|++|+||||++..++...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998765
No 415
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.50 E-value=0.52 Score=55.84 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=27.1
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
=+.+-+|++++|+|++|+|||||+..++.-.
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3678999999999999999999998877643
No 416
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=79.46 E-value=2.8 Score=45.24 Aligned_cols=69 Identities=13% Similarity=-0.016 Sum_probs=42.1
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHHHh---cCCcEEEEEEec-CCC-chHHHHHHHhhhcCcc-ccEEEEEEcCC
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNIAI---EHKGCSVFIGVG-ERS-REGNDFYHEMKESNVL-DKVSLIYGQMN 750 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~~~---~~~~~~v~~~iG-er~-~ev~e~~~~~~~~~~~-~~~~vv~~t~d 750 (915)
..-.++.||+|+|||+++..+++.+.. +|+|+..+-.-| +++ ++++++++.+...... ++-++|+--++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 346889999999999999999886421 367775554323 222 2566666665433221 34566654443
No 417
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.45 E-value=1.9 Score=52.86 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred eeeeccCCCCChhhHHHHHHHH------------------------------HHhcCCcEEEEE-----EecCCCch---
Q psy210 684 KIGLFGGAGVGKTVNMMELIRN------------------------------IAIEHKGCSVFI-----GVGERSRE--- 725 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~------------------------------~~~~~~~~~v~~-----~iGer~~e--- 725 (915)
.++++||||||||.|+..++.. .+..+..++||. +.+.|+..
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~ 592 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------
T ss_pred eEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC
Q ss_pred --------HHHHHHHhhhcCccccEEEEEEcCCCC
Q psy210 726 --------GNDFYHEMKESNVLDKVSLIYGQMNEP 752 (915)
Q Consensus 726 --------v~e~~~~~~~~~~~~~~~vv~~t~d~~ 752 (915)
+.+|+.++..-.-.++ |+|.++.|.|
T Consensus 593 ~~~~~~rv~~~lL~~mdg~~~~~~-V~vi~aTN~p 626 (806)
T 3cf2_A 593 GGGAADRVINQILTEMDGMSTKKN-VFIIGATNRP 626 (806)
T ss_dssp -----CHHHHHHHHHHHSSCSSSS-EEEECC-CCS
T ss_pred CchHHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCc
No 418
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=79.45 E-value=0.93 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred eeeeccCCCCChhhHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++.|.|++|+||||++..++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998765
No 419
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.44 E-value=1 Score=45.77 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.3
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+|-++.|.|++|+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 420
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=79.37 E-value=0.84 Score=45.65 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=18.9
Q ss_pred eeeeccCCCCChhhHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~ 704 (915)
.++|.|++|+||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998875
No 421
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=79.37 E-value=0.94 Score=50.94 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.9
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+-.+.+|.+++|+|++|+|||||+..++.
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34577899999999999999999999987
No 422
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=79.36 E-value=1.7 Score=51.69 Aligned_cols=104 Identities=16% Similarity=0.245 Sum_probs=0.0
Q ss_pred ceeeecccccccc-----ceeeeecCCCCChhHHHHHHHHhhc---CCCeEEE---------------------------
Q psy210 245 IKSIDSMIPIGKG-----QRELIIGDRQTGKTTIAIDTIINQK---NKNVICI--------------------------- 289 (915)
Q Consensus 245 i~aiD~l~pigrG-----qr~~I~g~~g~GKt~l~l~~i~~~~---~~~~~~V--------------------------- 289 (915)
+..+|.|..+|-+ ..++|+|++|+||||| +.+|+... ..+.+.+
T Consensus 28 l~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTL-L~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~ 106 (608)
T 3szr_A 28 IDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSV-LEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI 106 (608)
T ss_dssp HHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHH-HHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred HHHHHHHHhCCCCCcccCCeEEEECCCCChHHHH-HHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Q ss_pred ------------------------------------------EEeeccc--------------hhhHHHHHHHHhccCCc
Q psy210 290 ------------------------------------------YVCIGQK--------------ISSLINVINKLKYYNCM 313 (915)
Q Consensus 290 ------------------------------------------~~~iGer--------------~~ev~~~~~~l~~~~~~ 313 (915)
+.++++. .+.+.+++..+...+
T Consensus 107 ~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~-- 184 (608)
T 3szr_A 107 EISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ-- 184 (608)
T ss_dssp CCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS--
T ss_pred cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC--
Q ss_pred ceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEec
Q psy210 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYD 356 (915)
Q Consensus 314 ~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~D 356 (915)
...++++.+++.....+ .++.+|+.+...|.+.++|++
T Consensus 185 ~~iil~vvt~~~d~a~~-----~~l~la~~v~~~g~rtI~VlT 222 (608)
T 3szr_A 185 ETISLVVVPSNVDIATT-----EALSMAQEVDPEGDRTIGILT 222 (608)
T ss_dssp SCCEEEEEESSSCTTTC-----HHHHHHHHHCSSCCSEEEEEE
T ss_pred CCCceEEEeccchhccH-----HHHHHHHHHhhcCCceEEEec
No 423
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=79.29 E-value=0.97 Score=49.14 Aligned_cols=28 Identities=14% Similarity=-0.019 Sum_probs=23.5
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
.+.+|+.++|.|++|+||||| +..|...
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL-~~~L~gl 113 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTT-ARVLQAL 113 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHH-HHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHH-HHHHHhh
Confidence 367899999999999999999 5666653
No 424
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.23 E-value=1.3 Score=47.84 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=22.2
Q ss_pred ceeeeecCCCCChhHHHHHHHHhhcCCCe
Q psy210 258 QRELIIGDRQTGKTTIAIDTIINQKNKNV 286 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~~~~~~~ 286 (915)
..++|.|++|||||++ ...+++..+..+
T Consensus 56 ~~vll~G~~GtGKT~l-a~~ia~~~~~~~ 83 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL-ANIISYEMSANI 83 (338)
T ss_dssp CCEEEECSTTSSHHHH-HHHHHHHTTCCE
T ss_pred CeEEEECcCCCCHHHH-HHHHHHHhCCCe
Confidence 3589999999999999 577777655554
No 425
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=79.15 E-value=2.4 Score=45.48 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=35.1
Q ss_pred eeeeccC-CCCChhhHHHHHHHHHHhcCCcEEEEEEecCC-CchHHHHHHHhhhcCc--cccEEEEEEcCCCCh
Q psy210 684 KIGLFGG-AGVGKTVNMMELIRNIAIEHKGCSVFIGVGER-SREGNDFYHEMKESNV--LDKVSLIYGQMNEPS 753 (915)
Q Consensus 684 r~~I~~~-~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer-~~ev~e~~~~~~~~~~--~~~~~vv~~t~d~~~ 753 (915)
...+++| +|+|||+++..+++.... + .+++-.... ...+.+.+.++.+... -++.++|.--.|.-.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~---~-~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNA---D-MMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTE---E-EEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCC---C-EEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 4555555 999999999998876521 2 233322222 2233333333322211 146677777666543
No 426
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=79.13 E-value=1.1 Score=44.78 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.4
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-.++|.|++|+|||||+..++...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 427
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=79.11 E-value=0.9 Score=43.57 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred eeeeccCCCCChhhHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~ 704 (915)
+++|+|++|+|||+|+..++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999988864
No 428
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.08 E-value=0.92 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.2
Q ss_pred eeeccCCCCChhhHHHHHHHHH
Q psy210 685 IGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++|.|++|+|||+|+..+++..
T Consensus 48 vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHc
Confidence 9999999999999999998765
No 429
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=79.05 E-value=4.7 Score=46.62 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=24.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+.+|+.++|+|+.|+||||| +..|+..
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTL-l~~LAgl 316 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTT-IGKLARQ 316 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHH-HHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHH-HHHHHHH
Confidence 4578899999999999999999 6777664
No 430
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=79.04 E-value=1 Score=45.19 Aligned_cols=29 Identities=24% Similarity=0.129 Sum_probs=23.7
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
..+.+|..++|.|++|+||||+ ...++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl-~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTL-AKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHH-HHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHH-HHHHHHh
Confidence 3566789999999999999999 5666654
No 431
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=78.97 E-value=5.4 Score=45.45 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=25.0
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhhcCCCeEEEEEeeccc
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQK 296 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~~V~~~iGer 296 (915)
++..+.+.|..|+||||++.......+..+-++.++.+.-.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 46678899999999999954333222333333444454443
No 432
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.94 E-value=0.43 Score=47.82 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=25.5
Q ss_pred eeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCC
Q psy210 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGER 722 (915)
Q Consensus 685 ~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer 722 (915)
+.|.|++|+|||+++.+++.. ..-++|+.-++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCC
Confidence 579999999999999988754 123578877664
No 433
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.91 E-value=0.66 Score=60.24 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=28.4
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
|.=+.|-+||+++|+|++|+|||||+.-+.+-.
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 334689999999999999999999999888743
No 434
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.85 E-value=2 Score=44.95 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=22.5
Q ss_pred cceeeeecCCCCChhHHHHHHHHhhcCCCe
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQKNKNV 286 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~~~~~~ 286 (915)
...++|.|++|||||++ ...+++..+..+
T Consensus 64 ~~~vLl~G~~GtGKT~l-a~~ia~~~~~~~ 92 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTAL-AAKIAEESNFPF 92 (272)
T ss_dssp EEEEEEECSTTSSHHHH-HHHHHHHHTCSE
T ss_pred CeEEEEECCCCCcHHHH-HHHHHHHhCCCE
Confidence 45689999999999999 577777655443
No 435
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=78.68 E-value=7.3 Score=37.48 Aligned_cols=22 Identities=18% Similarity=0.584 Sum_probs=19.0
Q ss_pred eeeeecCCCCChhHHHHHHHHhh
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
|+.++|+.|+|||+| +..+.+.
T Consensus 25 ~i~v~G~~~~GKSsl-i~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSL-LNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHH-HHHHHTS
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 788999999999999 6777654
No 436
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=78.67 E-value=0.98 Score=46.67 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.1
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.-++|.|++|||||+|+..+++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 448999999999999999998765
No 437
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=78.63 E-value=1 Score=45.06 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.0
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHh
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
-+.|.|++|+|||+|+..+++....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5899999999999999999987653
No 438
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=78.55 E-value=1 Score=47.73 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.2
Q ss_pred CCeeeeccCCCCChhhHHHHHHHHH
Q psy210 682 GGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 682 GQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.-++|.|++|||||+|+..+++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 5679999999999999999888764
No 439
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=78.54 E-value=0.94 Score=43.78 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=19.0
Q ss_pred eeeeccCCCCChhhHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~ 704 (915)
.+.|.|++|+||||++..++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999886
No 440
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=78.25 E-value=1.2 Score=47.21 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=27.4
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecC
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGE 721 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGe 721 (915)
.-++|.|++|||||+++..+++...... .-.+++-|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~-~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTE-EAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCG-GGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCC-cceEEeeccc
Confidence 4689999999999999999998764321 2234454554
No 441
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=78.25 E-value=0.82 Score=44.70 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.2
Q ss_pred eeeeccCCCCChhhHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|+.|+|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999988875
No 442
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=78.22 E-value=0.94 Score=51.76 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.6
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhc
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIE 709 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~ 709 (915)
-..|.|+||||||+++..+++.+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999987654
No 443
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=78.21 E-value=1.1 Score=44.64 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=21.3
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
.+-+|..+.|.|++|+||||+ ...++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl-~~~La~~ 48 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTL-GKAFARK 48 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHH-HHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHH-HHHHHHH
Confidence 456789999999999999999 4666654
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=78.19 E-value=1.2 Score=45.73 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.6
Q ss_pred ccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 680 LKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 680 gkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+|.+++|.|++|+||||++..++...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999999999988754
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=78.09 E-value=1.1 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.5
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
-.+.|.|++|+||||++..++...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 446
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=78.05 E-value=0.95 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.1
Q ss_pred eeeeccCCCCChhhHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+++|+|++|+|||||+..|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999888644
No 447
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=77.91 E-value=0.9 Score=43.32 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=17.4
Q ss_pred eeeeccCCCCChhhHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMEL 702 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i 702 (915)
-+.|.|++|+||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999999988
No 448
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=77.88 E-value=1.2 Score=44.25 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=21.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+...++|.|++|+||||++..+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999988753
No 449
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=77.81 E-value=4.9 Score=43.60 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.3
Q ss_pred eeeeccCCCCChhhHHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
-+.|.|++|+|||+++..+++...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 450
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=77.80 E-value=0.75 Score=49.67 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=29.0
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 248 IDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 248 iD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+|-|..+-.|+..+++|++|+||||| +.+|. ..
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTL-ln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSI-LSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHH-HHHHH-SC
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHH-HHHHH-Hh
Confidence 67778888899999999999999999 78887 53
No 451
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=77.76 E-value=1.2 Score=43.08 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.4
Q ss_pred cceeeeecCCCCChhHHHHHHHHhh
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
|..++|.|++|+||||+ +..++..
T Consensus 4 ~~~i~l~G~~GsGKSTl-~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI-GRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHH
Confidence 56789999999999999 5777765
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=77.76 E-value=1.5 Score=52.19 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=29.3
Q ss_pred eeeccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 247 SIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 247 aiD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
.++.+..+-+|+.++|+|++|+||||| +.+|+..-
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTL-LkiL~Gll 127 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTA-LKILAGKQ 127 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHH-HHHHHTSS
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHH-HHHHhcCC
Confidence 455666778899999999999999999 78888653
No 453
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=77.69 E-value=1.5 Score=43.70 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=22.4
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+|+-..|.|++|+||||++++.+.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467788999999999999888877653
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=77.46 E-value=0.9 Score=53.26 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=24.9
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|-..-+|+-.+|+|++|+|||||+..|+-
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 33456899999999999999999998775
No 455
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=77.44 E-value=0.97 Score=51.90 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=24.9
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+.+-+|++++|+|+.|+||||| +.+|+..
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTL-lr~L~Gl 161 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSL-SRTLCSY 161 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHH-HHHHHHT
T ss_pred eEeCCCCEEEEECCCCCCHHHH-HHHHhCc
Confidence 4456899999999999999999 7877764
No 456
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=77.43 E-value=12 Score=36.20 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred eeeeecCCCCChhHHHHHHHHhhc--------------------CCCeEEEEEeeccc--------hhhHHHHHHHHhcc
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQK--------------------NKNVICIYVCIGQK--------ISSLINVINKLKYY 310 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~~--------------------~~~~~~V~~~iGer--------~~ev~~~~~~l~~~ 310 (915)
+++++|++|+|||+| +..+.+.. +..+ .+|-.-|-. .+....+.+.....
T Consensus 25 ~i~v~G~~~~GKSsl-i~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T 1svi_A 25 EIALAGRSNVGKSSF-INSLINRKNLARTSSKPGKTQTLNFYIINDEL-HFVDVPGYGFAKVSKSEREAWGRMIETYITT 102 (195)
T ss_dssp EEEEEEBTTSSHHHH-HHHHHTC-------------CCEEEEEETTTE-EEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHhCCCCccccCCCCCceeeEEEEEECCcE-EEEECCCCCccccCHHHHHHHHHHHHHHHhh
Q ss_pred CCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHHHhcCCcEEEEe
Q psy210 311 NCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIY 355 (915)
Q Consensus 311 ~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~r~~g~~Vlv~~ 355 (915)
...-..++++-...++...... .+.+++.+.+..++++.
T Consensus 103 ~~~~~~~i~v~d~~~~~~~~~~------~~~~~~~~~~~p~i~v~ 141 (195)
T 1svi_A 103 REELKAVVQIVDLRHAPSNDDV------QMYEFLKYYGIPVIVIA 141 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHH------HHHHHHHHTTCCEEEEE
T ss_pred hhcCCEEEEEEECCCCCCHHHH------HHHHHHHHcCCCEEEEE
No 457
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.43 E-value=3.5 Score=45.34 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.0
Q ss_pred eeeeecCCCCChhHHHHHHHHhhcCCCe
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQKNKNV 286 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~~~~~~ 286 (915)
-++|.|++|||||+| ...+++..+..+
T Consensus 86 ~iLL~GppGtGKT~l-a~ala~~~~~~~ 112 (355)
T 2qp9_X 86 GILLYGPPGTGKSYL-AKAVATEANSTF 112 (355)
T ss_dssp CEEEECSTTSCHHHH-HHHHHHHHTCEE
T ss_pred eEEEECCCCCcHHHH-HHHHHHHhCCCE
Confidence 489999999999999 577888765544
No 458
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.25 E-value=2.6 Score=47.89 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=25.0
Q ss_pred cccceeeeecCCCCChhHHHHHHHHhhcCCCeE
Q psy210 255 GKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287 (915)
Q Consensus 255 grGqr~~I~g~~g~GKt~l~l~~i~~~~~~~~~ 287 (915)
-+| +++.|++|||||.| ..++++..+..+.
T Consensus 216 prG--vLLyGPPGTGKTlL-AkAiA~e~~~~fi 245 (437)
T 4b4t_I 216 PKG--VILYGAPGTGKTLL-AKAVANQTSATFL 245 (437)
T ss_dssp CSE--EEEESSTTTTHHHH-HHHHHHHHTCEEE
T ss_pred CCC--CceECCCCchHHHH-HHHHHHHhCCCEE
Confidence 355 89999999999999 5889988777753
No 459
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=77.22 E-value=1.3 Score=44.64 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=25.6
Q ss_pred cccCCeeeeccCCCCChhhHHHHHHHHHH
Q psy210 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 679 igkGQr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
+.+|..+.|.|++|+||||++..++....
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45788999999999999999999998764
No 460
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=77.19 E-value=1 Score=49.76 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=24.8
Q ss_pred ccc--cceeeeecCCCCChhHHHHHHHHhhcCC
Q psy210 254 IGK--GQRELIIGDRQTGKTTIAIDTIINQKNK 284 (915)
Q Consensus 254 igr--Gqr~~I~g~~g~GKt~l~l~~i~~~~~~ 284 (915)
+-+ |++.+|+|++|+||||| +..|+..-..
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTL-lk~L~gl~~~ 196 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVL-VNKLAAVFNT 196 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHH-HHHHHHHTTC
T ss_pred HHHhhhCeEEEECCCCCCHHHH-HHHHHHHhCC
Confidence 445 99999999999999999 7888876433
No 461
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=77.17 E-value=1.6 Score=52.15 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=33.7
Q ss_pred eeeeccCCCCChhhHHHHHHHHHHhcCCcEEEEEEecCCCchHHHHHHHhhh
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKE 735 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~~~~~~~~v~~~iGer~~ev~e~~~~~~~ 735 (915)
=.+|.||||||||+.+..++.++.+++.. |. +|.-...-|.++.+.+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~--IL-v~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLK--VL-CCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCC--EE-EEESSHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCe--EE-EEcCchHHHHHHHHHHHh
Confidence 46899999999999999999887664333 32 244455556666655543
No 462
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.17 E-value=3.8 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.0
Q ss_pred ceeeeecCCCCChhHHHHHHHHhhc
Q psy210 258 QRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
.-++|.|++|||||+| ...+++..
T Consensus 46 ~~iLL~GppGtGKT~l-a~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL-AKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHH-HHHHHHHT
T ss_pred ceEEEECCCCccHHHH-HHHHHHHc
Confidence 4488999999999999 57777765
No 463
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.12 E-value=0.77 Score=53.47 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=25.7
Q ss_pred cccccCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 677 ~pigkGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+.+-+|+.++|.|++|+|||||+..++..+
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345689999999999999999999887655
No 464
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=77.07 E-value=1.2 Score=46.48 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=25.7
Q ss_pred cccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 251 l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
=+.+-+ +.++|+|++|+||||| +.+|+...
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTL-l~~l~Gl~ 48 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVF-LELIAGIV 48 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHH-HHHHHTSS
T ss_pred EEEECC-EEEEEECCCCCCHHHH-HHHHhCCC
Confidence 356778 9999999999999999 88888753
No 465
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=77.00 E-value=4.1 Score=44.27 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.0
Q ss_pred eeeeecCCCCChhHHHHHHHHhh
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
-++|.|++|+|||++ +..+++.
T Consensus 40 ~~ll~G~~G~GKT~l-a~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI-ARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHH
Confidence 478999999999999 4666664
No 466
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=76.95 E-value=0.75 Score=45.52 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=23.0
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+.++|+|++|+|||||+..+++....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999987654
No 467
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=76.92 E-value=1.2 Score=43.25 Aligned_cols=25 Identities=20% Similarity=0.585 Sum_probs=21.4
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhh
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+|.|++|+|++|+|||+| +..+...
T Consensus 3 ~~~ki~ivG~~g~GKStL-l~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSL-LNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHH-HHHHHTS
T ss_pred CCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 478999999999999999 7887764
No 468
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=76.91 E-value=1.4 Score=43.34 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=22.6
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+..+|..++|.|++|+||||+ ...++..
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv-~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSM-AEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHH-HHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH-HHHHHHh
Confidence 445688999999999999999 4666654
No 469
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.77 E-value=3.1 Score=51.40 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=23.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
+..-+++.|++|||||+|+..+++.+..
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3456899999999999999999987753
No 470
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.72 E-value=1.2 Score=49.41 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=26.3
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhhcC
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQKN 283 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~~ 283 (915)
+.+-+|+.++|.|+.|+||||| +.+|.....
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTl-l~~l~~~~~ 200 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTL-MKALMQEIP 200 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHH-HHHHHTTSC
T ss_pred HHHhcCCEEEEECCCCCCHHHH-HHHHHhcCC
Confidence 3466799999999999999999 888887643
No 471
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=76.62 E-value=1.3 Score=44.96 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=22.9
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++..+.|.|++|+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998765
No 472
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=76.62 E-value=1.4 Score=45.09 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.0
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++.++.|.|++|+||||++..++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 473
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=76.59 E-value=1.3 Score=46.81 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.8
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
.+.-+.|.|++|||||+|+..+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998876
No 474
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=76.58 E-value=3.5 Score=44.51 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=22.5
Q ss_pred ceeeeecCCCCChhHHHHHHHHhhcCCCe
Q psy210 258 QRELIIGDRQTGKTTIAIDTIINQKNKNV 286 (915)
Q Consensus 258 qr~~I~g~~g~GKt~l~l~~i~~~~~~~~ 286 (915)
..++|.|++|||||+| ...+++..+..+
T Consensus 52 ~~vLl~GppGtGKT~l-a~aia~~~~~~~ 79 (322)
T 3eie_A 52 SGILLYGPPGTGKSYL-AKAVATEANSTF 79 (322)
T ss_dssp CEEEEECSSSSCHHHH-HHHHHHHHTCEE
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHCCCE
Confidence 3489999999999999 578888765554
No 475
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=76.58 E-value=2.1 Score=42.43 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.4
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
..++|.|++|+|||||+..++.....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 46789999999999999999987654
No 476
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=76.56 E-value=1.4 Score=42.32 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.7
Q ss_pred eeeeccCCCCChhhHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++.|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998764
No 477
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=76.53 E-value=8.9 Score=41.80 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=22.9
Q ss_pred ccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 254 IGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 254 igrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
-.+|+.++|+|+.|+||||+ +..|+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTl-l~~Lag~ 152 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTT-IAKLANW 152 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH-HHHHHHH
Confidence 35799999999999999999 6777763
No 478
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=76.50 E-value=6.9 Score=38.04 Aligned_cols=85 Identities=19% Similarity=0.319 Sum_probs=0.0
Q ss_pred eeeeecCCCCChhHHHHHHHHhhcCCC------------------------------------------------eEEEE
Q psy210 259 RELIIGDRQTGKTTIAIDTIINQKNKN------------------------------------------------VICIY 290 (915)
Q Consensus 259 r~~I~g~~g~GKt~l~l~~i~~~~~~~------------------------------------------------~~~V~ 290 (915)
|++|+|++++|||+| +..+.+..... +.+||
T Consensus 25 ki~v~G~~~~GKSsl-i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 103 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSF-LFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 103 (191)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCcCHHHH-HHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEE
Q ss_pred Eee-ccchhhHHHHHHHHhccCCcceEEEEEecCCCCHHHhhhhhhhhhhhHHHH
Q psy210 291 VCI-GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYF 344 (915)
Q Consensus 291 ~~i-Ger~~ev~~~~~~l~~~~~~~~tvvv~~~a~~~~~~r~~~~~~a~tiAEy~ 344 (915)
-.- .+..+++.++++.+......+..++++.+-.|-+..+......+..+++.+
T Consensus 104 d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 158 (191)
T 3dz8_A 104 DITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL 158 (191)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc
No 479
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.39 E-value=1.3 Score=51.81 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=24.1
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
+|.-++|+||+|||||+|+..|+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999998865
No 480
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=76.36 E-value=1.4 Score=41.63 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.8
Q ss_pred eeeeccCCCCChhhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|+.++|++|+|||+|+..+..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988764
No 481
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=76.31 E-value=1.3 Score=45.91 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=22.7
Q ss_pred cCCeeeeccCCCCChhhHHHHHHHHH
Q psy210 681 KGGKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 681 kGQr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++=++.|+|++|+||||++..++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 482
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=76.18 E-value=0.78 Score=57.35 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=27.7
Q ss_pred ecccccccCCeeeeccCCCCChhhHHHHHHHH
Q psy210 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 674 D~l~pigkGQr~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|.=+.+-+|++++|+|++|+|||||+..|+--
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567899999999999999999999888753
No 483
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=76.16 E-value=1.4 Score=42.73 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=20.9
Q ss_pred ccceeeeecCCCCChhHHHHHHHHhh
Q psy210 256 KGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 256 rGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+|..++|+|++|+||||+ +..++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl-~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV-ASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHH-HHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH-HHHHHHh
Confidence 478899999999999999 5666654
No 484
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=76.11 E-value=1.3 Score=41.51 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.1
Q ss_pred eeeeccCCCCChhhHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|+.++|++|+|||+|+..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999988875
No 485
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=75.96 E-value=1.2 Score=43.13 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.6
Q ss_pred CeeeeccCCCCChhhHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~ 704 (915)
-+++++|++|+|||+|+..++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3789999999999999988874
No 486
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=75.93 E-value=1.3 Score=47.87 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=23.2
Q ss_pred cccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 253 PIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 253 pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
+..+|..++|.|++|+||||| +.+|...
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl-~~~L~~~ 103 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTT-ARVLQAL 103 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHH-HHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHH-HHHHHHH
Confidence 347899999999999999999 6777653
No 487
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=75.85 E-value=1.3 Score=48.59 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=25.1
Q ss_pred ccccccceeeeecCCCCChhHHHHHHHHhh
Q psy210 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281 (915)
Q Consensus 252 ~pigrGqr~~I~g~~g~GKt~l~l~~i~~~ 281 (915)
..+.+|+.++|+|++|+||||| +.+|+..
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTL-l~~l~g~ 78 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTT-IDALGSL 78 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHH-HHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHH-HHHHHHh
Confidence 4578899999999999999999 7887753
No 488
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=75.84 E-value=1.3 Score=42.28 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.9
Q ss_pred eeeeccCCCCChhhHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~ 704 (915)
|+.|+|++|+|||+|+..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 789999999999999987764
No 489
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=75.81 E-value=1.3 Score=41.66 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.7
Q ss_pred eeeeccCCCCChhhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|+.++|++|+|||+|+..+..+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999988764
No 490
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=75.77 E-value=0.92 Score=48.88 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=29.2
Q ss_pred eeccccccccceeeeecCCCCChhHHHHHHHHhhc
Q psy210 248 IDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK 282 (915)
Q Consensus 248 iD~l~pigrGqr~~I~g~~g~GKt~l~l~~i~~~~ 282 (915)
+|-++.+-.|+..+|+|++|+||||| +.+|....
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTl-l~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSL-LNAINPGL 193 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHH-HHHHSTTC
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHH-HHHhcccc
Confidence 56677788899999999999999999 88888754
No 491
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=75.75 E-value=1.9 Score=47.07 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.6
Q ss_pred eeeeccCCCCChhhHHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
-+||.|++|+|||||+..+..-..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999988876553
No 492
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=75.74 E-value=1.4 Score=42.39 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.2
Q ss_pred CeeeeccCCCCChhhHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
..+.|.|++|+||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
No 493
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=75.65 E-value=0.77 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.7
Q ss_pred ccccccCCeeeeccCCCCChhhHHHHHH
Q psy210 676 LCPFLKGGKIGLFGGAGVGKTVNMMELI 703 (915)
Q Consensus 676 l~pigkGQr~~I~~~~g~GKt~Ll~~i~ 703 (915)
=+.|.+|+.++|+|++|+|||||+..|+
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3678899999999999999999997654
No 494
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=75.64 E-value=1.4 Score=41.40 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=19.7
Q ss_pred eeeeccCCCCChhhHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRN 705 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~ 705 (915)
|+.++|++|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 495
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.54 E-value=3.8 Score=43.33 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred CeeeeccCCCCChhhHHHHHHHHHH
Q psy210 683 GKIGLFGGAGVGKTVNMMELIRNIA 707 (915)
Q Consensus 683 Qr~~I~~~~g~GKt~Ll~~i~~~~~ 707 (915)
..+.|.|++|+|||+++..+++.+.
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3499999999999999999998763
No 496
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=75.38 E-value=1.4 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.7
Q ss_pred eeeeccCCCCChhhHHHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIRNI 706 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~~~ 706 (915)
++.|.|++|+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998764
No 497
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.03 E-value=3.3 Score=47.38 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.3
Q ss_pred eeeecCCCCChhHHHHHHHHhhcCCCeE
Q psy210 260 ELIIGDRQTGKTTIAIDTIINQKNKNVI 287 (915)
Q Consensus 260 ~~I~g~~g~GKt~l~l~~i~~~~~~~~~ 287 (915)
+++.|++|||||.| ..+|++..+..+.
T Consensus 246 ILLyGPPGTGKTlL-AkAiA~e~~~~fi 272 (467)
T 4b4t_H 246 ILLYGPPGTGKTLC-ARAVANRTDATFI 272 (467)
T ss_dssp EEECSCTTSSHHHH-HHHHHHHHTCEEE
T ss_pred eEeeCCCCCcHHHH-HHHHHhccCCCeE
Confidence 89999999999999 5889988776653
No 498
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=75.03 E-value=0.97 Score=51.19 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.7
Q ss_pred eeeeccCCCCChhhHHHHHHH
Q psy210 684 KIGLFGGAGVGKTVNMMELIR 704 (915)
Q Consensus 684 r~~I~~~~g~GKt~Ll~~i~~ 704 (915)
.++|+|++|+|||||+..|+.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999988875
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=74.99 E-value=0.82 Score=53.73 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=27.3
Q ss_pred ccccCCeeeeccCCCCChhhHHHHHHHHHHh
Q psy210 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708 (915)
Q Consensus 678 pigkGQr~~I~~~~g~GKt~Ll~~i~~~~~~ 708 (915)
.+-+|+.+.|+|++|+|||||+..++..+..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3678999999999999999999999987653
No 500
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=74.98 E-value=1.4 Score=43.33 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=19.7
Q ss_pred cceeeeecCCCCChhHHHHHHHHh
Q psy210 257 GQRELIIGDRQTGKTTIAIDTIIN 280 (915)
Q Consensus 257 Gqr~~I~g~~g~GKt~l~l~~i~~ 280 (915)
|+-++|+|++|+||||+ +..++.
T Consensus 2 g~ii~l~G~~GaGKSTl-~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTT-CKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHH-HHHHHH
T ss_pred CeEEEEECCCCCcHHHH-HHHHhc
Confidence 56788999999999999 677765
Done!