RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy210
(915 letters)
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.
Length = 463
Score = 686 bits (1773), Expect = 0.0
Identities = 234/332 (70%), Positives = 272/332 (81%), Gaps = 1/332 (0%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +G+ +VRTIA G+T+G+ R V+DTG PI PVG TLGRI NVLG+PID KG I
Sbjct: 44 VAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPI 103
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMME 701
++++ PIH P F ILETGIKVIDLL P+ KGGKIGLFGGAGVGKTV + E
Sbjct: 104 GAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQE 163
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVAL 761
LI NIA EH G SVF GVGER+REGND YHEMKES VLDK +L++GQMNEP G RLRVAL
Sbjct: 164 LINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223
Query: 762 TGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
TGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA EMG+LQE
Sbjct: 224 TGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQE 283
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITSVQA+YVPADDLTDP+P+TTF HLD+T VLSRQIAELGIYPA+DPL+S
Sbjct: 284 RITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDST 343
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+ LDP IVGEEHY VA EV+ LQ+YKEL+D
Sbjct: 344 SRILDPLIVGEEHYDVAREVQQILQRYKELQD 375
Score = 61.3 bits (150), Expect = 1e-09
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
L +G + T +PVG LGRI N GE ID K + R + + AP + +
Sbjct: 64 LVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELST 123
Query: 237 VNEPLLTGIKSIDSMIPIGKG 257
E L TGIK ID + P KG
Sbjct: 124 KTEILETGIKVIDLLAPYAKG 144
Score = 31.6 bits (73), Expect = 2.2
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 336 TGCTIGEYFRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPP 376
TG T+ EYFRD GQD L+ D++ + A ++S LL R P
Sbjct: 224 TGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 265
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.
Length = 502
Score = 670 bits (1732), Expect = 0.0
Identities = 229/402 (56%), Positives = 302/402 (75%), Gaps = 9/402 (2%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
AV++ D +++ +G T +I E+PVG LLGR+VN G+ ID K VE+
Sbjct: 73 AVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRPVERK 132
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
APG++DR+SV+EPL TGIK+ID+MIPIG+GQRELIIGDRQTGKT IAIDTIINQK K+VI
Sbjct: 133 APGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKDVI 192
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347
CIYV IGQK S++ V+ KL+ + M+YT+VVAATA+D A QY++PY GC +GEYF D
Sbjct: 193 CIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDN 252
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407
G+D LI+YDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++ E
Sbjct: 253 GKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSD---ELG 309
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSV 467
G+LTA PIIET GDV+++IPTNVISITDGQIFL+++LFN+ RPAINVG+SV
Sbjct: 310 ------GGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISV 363
Query: 468 SRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQK 527
SRVGGAAQ K +KK++G +R+ LAQYRELE+F++F SDLD T+ QL G+++ L+KQ
Sbjct: 364 SRVGGAAQIKAMKKVAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLERGQRLVELLKQP 423
Query: 528 PHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
+ + E ++IL N + +P++++ FE ++ Y R
Sbjct: 424 QYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYLR 465
Score = 73.9 bits (183), Expect = 1e-13
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 75/252 (29%)
Query: 588 ENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
E+ V + G+ IK V TG+ + PVG+ LGR++N LG PID KG I + +
Sbjct: 68 EDNVGAVILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETR 127
Query: 648 PIHTLPP-----KFSNQIFNNNILETGIKVIDLLCPFLKGGKIG------LFGGAGVGKT 696
P+ P K ++ L+TGIK ID + P IG + G GKT
Sbjct: 128 PVERKAPGVIDRKSVHE-----PLQTGIKAIDAMIP------IGRGQRELIIGDRQTGKT 176
Query: 697 VNMMELIRNIAIE----HKG----CSVFIGVGERSREGNDFYHEMKESNVLDKVSLI--Y 746
IAI+ KG C +++ +G+ K S V V + +
Sbjct: 177 A--------IAIDTIINQKGKDVIC-IYVAIGQ------------KASTVAQVVRKLEEH 215
Query: 747 GQM----------NEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNI------YRFTLA 790
G M ++P+ + G ++ E F ++GKD L+ D++ YR
Sbjct: 216 GAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYR---- 271
Query: 791 GTEVSAMLGRTP 802
++S +L R P
Sbjct: 272 --QLSLLLRRPP 281
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy
production and conversion].
Length = 468
Score = 628 bits (1621), Expect = 0.0
Identities = 235/334 (70%), Positives = 274/334 (82%), Gaps = 3/334 (0%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +G+N+VRTIA G+T+G+ R V+DTGKPI PVG TLGRI NVLG+PID KG I
Sbjct: 45 VAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPI 104
Query: 642 NSK--KKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNM 699
++ +K PIH P F ILETGIKVIDLL P+ KGGKIGLFGGAGVGKTV +
Sbjct: 105 KAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI 164
Query: 700 MELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRV 759
ELI NIA EH G SVF GVGER+REGND YHEMKES VLDK +L++GQMNEP G R+RV
Sbjct: 165 QELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRV 224
Query: 760 ALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL 818
ALTGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA EMG+L
Sbjct: 225 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQL 284
Query: 819 QERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLE 878
QERI+STK G+ITSVQA+YVPADDLTDP+P+TTF HLD+T VLSRQIA LGIYPA+DPL+
Sbjct: 285 QERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLD 344
Query: 879 SYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S S+ LDP IVGEEHY+VA EV+ LQ+YKEL+D
Sbjct: 345 STSRALDPKIVGEEHYEVAREVQSILQRYKELQD 378
Score = 90.4 bits (225), Expect = 6e-19
Identities = 85/340 (25%), Positives = 147/340 (43%), Gaps = 28/340 (8%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVE-- 225
+ + L +G + T K +PVG LGRI N GE ID K ++ E
Sbjct: 56 TIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIH 115
Query: 226 KIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ--KN 283
+ AP + + E L TGIK ID + P KG + + G GKT + I +IN K
Sbjct: 116 RKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL-IQELINNIAKE 174
Query: 284 KNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEY 343
++ +G++ ++ +++K +D T +V + + TG T+ EY
Sbjct: 175 HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEY 234
Query: 344 FRD-LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKY 402
FRD GQD L+ D++ + A ++S LL R P V Y L ++
Sbjct: 235 FRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSA------VGY-QPTLATEMGQL--- 284
Query: 403 FLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAIN 462
+++I + G++T+ + D+T P + D L + PA++
Sbjct: 285 ---QERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVD 341
Query: 463 VGLSVSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
S SR + G Y++ ++ ++ +L +Y+EL+
Sbjct: 342 PLDSTSRALDPKIVGEEHYEVARE----VQSILQRYKELQ 377
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 614 bits (1586), Expect = 0.0
Identities = 234/413 (56%), Positives = 305/413 (73%), Gaps = 11/413 (2%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
AV++ D ++ +G + T +I E+PVG ELLGR+V++ G ID K VEK
Sbjct: 73 AVILGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKK 132
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
APG+MDR+SVNEPL TGIK+ID++IPIG+GQRELIIGDRQTGKT IAIDTIINQK V
Sbjct: 133 APGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGSGVK 192
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347
CIYV IGQK S++ NV+ L+ + MDYT+VVAA+A+DSA QY++PY GC + EYFRD
Sbjct: 193 CIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRDN 252
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407
G+D LI+YDDL+KHA AYR+ISLLLRRPPGREA+PGDVFYLHSRLLER++K++
Sbjct: 253 GKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSD------ 306
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSV 467
G++TA PIIET GDV+++IPTNVISITDGQIFL+T+LFN+ RPAINVGLSV
Sbjct: 307 ---ELGGGSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSV 363
Query: 468 SRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQK 527
SRVG AAQ K +KK++G +R++LAQYRELE+FS+F SDLD T+ QL G++++ L+KQ
Sbjct: 364 SRVGSAAQIKAMKKVAGSLRLILAQYRELEAFSQFGSDLDKATRKQLERGKRLTELLKQP 423
Query: 528 PHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRI--INLKNNIS 578
+ S+ E ++IL N + +P++++ FE ++ Y R L I
Sbjct: 424 QYSPLSVEEQVLILYAGTNGYLDDVPVEKVADFEKELLAYLRSDHKELLEEIR 476
Score = 111 bits (279), Expect = 2e-25
Identities = 98/350 (28%), Positives = 160/350 (45%), Gaps = 50/350 (14%)
Query: 588 ENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
E+ V + G+ + IK V TG+ + PVG+ LGR+++ LG+PID KG I++ K
Sbjct: 68 EDSVGAVILGDYSDIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTR 127
Query: 648 PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707
P+ P ++ N L+TGIK ID L P +G + + G GKT IA
Sbjct: 128 PVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKT--------AIA 179
Query: 708 IE----HKG----CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRV 759
I+ KG C +++ +G++ + ++E +D ++ ++ + +
Sbjct: 180 IDTIINQKGSGVKC-IYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLA 238
Query: 760 ALTGLSIAEEFRNSGKDVLLFID------NIYRFTLAGTEVSAMLGRTPSAVGYQP---- 809
G ++AE FR++GKDVL+ D YR E+S +L R P Y
Sbjct: 239 PYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYR------EISLLLRRPPGREAYPGDVFY 292
Query: 810 ---TLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIA 866
L E KL + + G+IT++ I A D++ P+ + D I L +
Sbjct: 293 LHSRLLERAAKLSDEL---GGGSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLF 349
Query: 867 ELGIYPAIDPLESYSKQLDPYIVGE--EHY---KVANEVKFYLQKYKELK 911
GI PAI+ S S+ VG + KVA ++ L +Y+EL+
Sbjct: 350 NAGIRPAINVGLSVSR------VGSAAQIKAMKKVAGSLRLILAQYRELE 393
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 591 bits (1526), Expect = 0.0
Identities = 232/332 (69%), Positives = 272/332 (81%), Gaps = 1/332 (0%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +G++ VRTIA G+T+G+ R V+DTG PI PVG TLGRI NVLG+PID KG I
Sbjct: 43 VAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPI 102
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMME 701
+K++ PIH P F Q ILETGIKVIDLL P+ KGGKIGLFGGAGVGKTV + E
Sbjct: 103 PAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQE 162
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVAL 761
LI NIA EH G SVF GVGER+REGND YHEMKES V+DK +L+YGQMNEP G R+RVAL
Sbjct: 163 LINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222
Query: 762 TGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
TGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA EMG+LQE
Sbjct: 223 TGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQE 282
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STK G+ITSVQA+YVPADDLTDP+P+TTF HLD+T VLSR+IAELGIYPA+DPL+S
Sbjct: 283 RITSTKTGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDST 342
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+ LDP +VGEEHY VA V+ LQ+YKEL+D
Sbjct: 343 SRLLDPSVVGEEHYDVARGVQQILQRYKELQD 374
Score = 93.2 bits (232), Expect = 7e-20
Identities = 86/328 (26%), Positives = 139/328 (42%), Gaps = 24/328 (7%)
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
L +G + T +PVG E LGRI N GE ID K K R + + AP ++ +
Sbjct: 63 LVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQST 122
Query: 237 VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQ 295
E L TGIK ID + P KG + + G GKT + + I N K ++ +G+
Sbjct: 123 KVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE 182
Query: 296 KISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL-GQDCLII 354
+ ++ +++K +D T +V + + TG T+ EYFRD GQD L+
Sbjct: 183 RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVLLF 242
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ + A ++S LL R P + + L ER I +
Sbjct: 243 IDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQER-------------ITSTKT 289
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----- 469
G++T+ + D+T P + D L + PA++ S SR
Sbjct: 290 GSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPS 349
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
V G Y + + + +L +Y+EL+
Sbjct: 350 VVGEEHYDVARGVQQ----ILQRYKELQ 373
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 574 bits (1482), Expect = 0.0
Identities = 201/402 (50%), Positives = 280/402 (69%), Gaps = 9/402 (2%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
AVL+DD ++ G + T ++ E+PVG LLGR+++ G +D R +E+
Sbjct: 73 AVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERP 132
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
AP I++R+ V EPL TGIK +D++IPIG+GQRELIIGDRQTGKT IAID IINQK+ +VI
Sbjct: 133 APAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAIINQKDSDVI 192
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347
C+YV IGQK S++ VI L+ + ++YT VV A A+D QY++P+ GC I EYFRD
Sbjct: 193 CVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQ 252
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407
GQD LI+YDDL+KHA AYR++SLLLRRPPGREA+PGD+FYLHSRLLER++K++
Sbjct: 253 GQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSP------ 306
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSV 467
G+LTA PIIETL G+++++IPTN+ISITDGQI+LD++LF + RPA++VGLSV
Sbjct: 307 ---ELGGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSV 363
Query: 468 SRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQK 527
SRVGG AQ+ ++K SG +R+ AQ+ ELE+F++F LD T+ Q+ G ++ L+KQ
Sbjct: 364 SRVGGKAQHPAIRKESGRLRLDYAQFLELEAFTRFGGLLDAGTQKQITRGRRLRELLKQP 423
Query: 528 PHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
S+ E I +L + +P+ I+ FE +++
Sbjct: 424 RFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLLEKLD 465
Score = 99 bits (250), Expect = 7e-22
Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 15/306 (4%)
Query: 586 IGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKK 645
+ E +V + +T I T V TG+ + PVGD LGR+++ LG P+D G + +
Sbjct: 66 LEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATA 125
Query: 646 KSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705
+ P+ P + F L+TGIKV+D L P +G + + G GKT ++ I
Sbjct: 126 RRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAIDAI-- 183
Query: 706 IAIEHKG--CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
I + C V++ +G+++ ++E L+ +++ + ++P G + G
Sbjct: 184 INQKDSDVIC-VYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAG 242
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY-------QPTLAEEMG 816
+IAE FR+ G+D L+ D++ + A E+S +L R P Y L E
Sbjct: 243 CAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAA 302
Query: 817 KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDP 876
KL + G++T++ I A +L+ P+ + D I L + G PA+D
Sbjct: 303 KLSPEL---GGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDV 359
Query: 877 LESYSK 882
S S+
Sbjct: 360 GLSVSR 365
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha
subunit. The sequences of ATP synthase F1 alpha and
beta subunits are related and both contain a
nucleotide-binding site for ATP and ADP. They have a
common amino terminal domain but vary at the C-terminus.
The beta chain has catalytic activity, while the alpha
chain is a regulatory subunit. The alpha-subunit
contains a highly conserved adenine-specific
noncatalytic nucleotide-binding domain. The conserved
amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton
translocating ATP synthase F1, alpha subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), B subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 501
Score = 572 bits (1477), Expect = 0.0
Identities = 239/402 (59%), Positives = 305/402 (75%), Gaps = 9/402 (2%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
AV++ D ++ +G T +I E+PVG LLGR+VN+ GE ID K VEKI
Sbjct: 72 AVIMGDYSDIREGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGKGPIDSDEFSPVEKI 131
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
APG+++R+SV+EPL TGIK+ID+MIPIG+GQRELIIGDRQTGKT +AIDTIINQK+ +V
Sbjct: 132 APGVIERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIINQKDSDVY 191
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347
CIYV IGQK S++ V+ KL+ + M YT+VVAATA+DSA+ QY++PYTGCT+GEYFRD
Sbjct: 192 CIYVAIGQKASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQYLAPYTGCTMGEYFRDN 251
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407
G+ LIIYDDL+K A AYRQISLLLRRPPGREAFPGDVFYLHSRLLER++K+N
Sbjct: 252 GKHALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAKLND------ 305
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSV 467
K G+LTA PIIET GDV+++IPTNVISITDGQIFL+++LFNS RPAINVGLSV
Sbjct: 306 ---EKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSV 362
Query: 468 SRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQK 527
SRVGGAAQ K +K+++G +R+ LAQYRELE+FS+F+SDLD TK QL G+++ L+KQ
Sbjct: 363 SRVGGAAQIKAMKQVAGSLRLELAQYRELEAFSQFASDLDEATKKQLERGQRVVELLKQP 422
Query: 528 PHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
++ S+ E ++IL + IP+ +I FE ++ Y
Sbjct: 423 QYKPLSVEEQVVILFAGTKGYLDDIPVDKIRKFEQALLAYLD 464
Score = 114 bits (287), Expect = 1e-26
Identities = 88/353 (24%), Positives = 165/353 (46%), Gaps = 24/353 (6%)
Query: 570 IINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILN 629
+I + + + + E+ V + G+ + I+ + V TG+ + PVGD LGR++N
Sbjct: 51 LIEFEGGVQ--GIALNLEEDSVGAVIMGDYSDIREGSTVKRTGRILEVPVGDGLLGRVVN 108
Query: 630 VLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFG 689
LG+PID KG I+S + SP+ + P + + L+TGIK ID + P +G + + G
Sbjct: 109 ALGEPIDGKGPIDSDEFSPVEKIAPGVIERKSVHEPLQTGIKAIDAMIPIGRGQRELIIG 168
Query: 690 GAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQM 749
GKT ++ I N C +++ +G+++ +++E + ++
Sbjct: 169 DRQTGKTAVAIDTIINQKDSDVYC-IYVAIGQKASTVAQVVRKLEEHGAMAYTIVVAATA 227
Query: 750 NEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY-- 807
++ + + TG ++ E FR++GK L+ D++ + +A ++S +L R P +
Sbjct: 228 SDSASLQYLAPYTGCTMGEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAFPG 287
Query: 808 -----QPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLS 862
L E KL + G++T++ I A D++ P+ + D I L
Sbjct: 288 DVFYLHSRLLERAAKLNDEKGG---GSLTALPIIETQAGDVSAYIPTNVISITDGQIFLE 344
Query: 863 RQIAELGIYPAIDPLESYSKQLDPYIVG-----EEHYKVANEVKFYLQKYKEL 910
+ GI PAI+ S S+ VG + +VA ++ L +Y+EL
Sbjct: 345 SDLFNSGIRPAINVGLSVSR------VGGAAQIKAMKQVAGSLRLELAQYREL 391
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional.
Length = 461
Score = 557 bits (1438), Expect = 0.0
Identities = 210/332 (63%), Positives = 254/332 (76%), Gaps = 1/332 (0%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V+Q + E VR IA G+T+G+ R V +TG PI PVG+ LGR+L+VLG+P+D +
Sbjct: 43 VKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPL 102
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMME 701
++++ PIH+ P + Q + ILETGIKVIDLLCP KGGK GLFGGAGVGKTV MME
Sbjct: 103 PAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMME 162
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVAL 761
LI NI+ +H G SVF GVGERSREG++ YHEMKES VLDK ++YGQMNEP G R+RV L
Sbjct: 163 LIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222
Query: 762 TGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQE 820
TGL+IAE R+ +DVLLFIDNI+RF AG+EVS +LGR PS VGYQPTLA E+ +LQE
Sbjct: 223 TGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQE 282
Query: 821 RISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY 880
RI+STKNG+ITS+QA+YVPADDLTDP+ F+HLDST+VLSR A GIYPAIDPL S
Sbjct: 283 RIASTKNGSITSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASS 342
Query: 881 SKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S LDP +VGE HY A EVK LQ+YKEL+D
Sbjct: 343 SNLLDPLVVGERHYDAAIEVKRILQRYKELED 374
Score = 92.2 bits (230), Expect = 2e-19
Identities = 84/337 (24%), Positives = 149/337 (44%), Gaps = 24/337 (7%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
A+ + L +G + T E+PVG +LGR+++ GE +D + R +
Sbjct: 54 AIALGSTSGLARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHST 113
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNV 286
P + ++++ E L TGIK ID + PI KG + + G GKT + ++ I N K +
Sbjct: 114 IPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSG 173
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD 346
++ +G++ + +++K +D TV+V + + TG TI EY RD
Sbjct: 174 SSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRD 233
Query: 347 -LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLE 405
+D L+ D++ + A ++S LL R P R V Y L +++
Sbjct: 234 EEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSR------VGY-QPTLASEVAEL------ 280
Query: 406 KKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGL 465
+++I + NG++T+ + D+T + S D + L PAI+
Sbjct: 281 QERIASTKNGSITSIQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLA 340
Query: 466 SVSR-----VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
S S V G Y + ++ +L +Y+ELE
Sbjct: 341 SSSNLLDPLVVGERHYDAAIE----VKRILQRYKELE 373
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit.
Length = 485
Score = 538 bits (1387), Expect = 0.0
Identities = 214/429 (49%), Positives = 284/429 (66%), Gaps = 20/429 (4%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
VL+ D + +G T KI +IPV LGR+VN+ + ID K + +E
Sbjct: 52 VVLMGDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESP 111
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
APGI+ R SV EPL TG+ +IDSMIPIG+GQRELIIGDRQTGKT +A DTI+NQK +NVI
Sbjct: 112 APGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVI 171
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347
C+YV IGQK SS+ V+ L+ M+YT+VVA TA A QY++PYTG + EYF
Sbjct: 172 CVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYR 231
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407
G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++ E
Sbjct: 232 GRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGE-- 289
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSV 467
G++TA PI+ET GDV+++IPTNVISITDGQIFL +LFN+ RPAINVG+SV
Sbjct: 290 -------GSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISV 342
Query: 468 SRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQK 527
SRVG AAQ K +K+++G +++ LAQ+ ELE+F++F+SDLD T+ QL G+++ L+KQ
Sbjct: 343 SRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQS 402
Query: 528 PHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNNISINKVQQQIG 587
++ E + + N + + I Q+ F ++ L+ + NK Q
Sbjct: 403 QSAPLTVEEQVATIYTGTNGYLDSLEIGQVRKF---------LVELRTYLKTNK--PQFQ 451
Query: 588 ENIVRTIAF 596
E I T F
Sbjct: 452 EIISSTKTF 460
Score = 71.1 bits (175), Expect = 1e-12
Identities = 72/286 (25%), Positives = 131/286 (45%), Gaps = 11/286 (3%)
Query: 597 GNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKF 656
G+ I+ + V TGK PV + LGR++N L PID KGEI++ + I + P
Sbjct: 56 GDGLMIQEGSSVKATGKIAQIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGI 115
Query: 657 SNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVF 716
++ L+TG+ ID + P +G + + G GKT + I N ++ C V+
Sbjct: 116 ISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQNVIC-VY 174
Query: 717 IGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKD 776
+ +G+++ ++E ++ ++ + P+ + TG ++AE F G+
Sbjct: 175 VAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRH 234
Query: 777 VLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY-------QPTLAEEMGKLQERISSTKNGT 829
L+ D++ + A ++S +L R P Y L E KL ++ G+
Sbjct: 235 TLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGE---GS 291
Query: 830 ITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
+T++ + A D++ P+ + D I LS + GI PAI+
Sbjct: 292 MTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAIN 337
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit.
Length = 494
Score = 536 bits (1382), Expect = 0.0
Identities = 215/339 (63%), Positives = 258/339 (76%), Gaps = 8/339 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
VQQ +G N VR +A T+G+ R V+DTG P+ PVG TLGRI NVLG+P+DN G +
Sbjct: 61 VQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPV 120
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMME 701
+++ SPIH P F +I ETGIKV+DLL P+ +GGKIGLFGGAGVGKTV +ME
Sbjct: 121 DTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIME 180
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD-------KVSLIYGQMNEPSG 754
LI NIA H G SVF GVGER+REGND Y EMKES V++ KV+L+YGQMNEP G
Sbjct: 181 LINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 240
Query: 755 NRLRVALTGLSIAEEFRNSGK-DVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAE 813
R+RV LT L++AE FR+ K DVLLFIDNI+RF AG+EVSA+LGR PSAVGYQPTL+
Sbjct: 241 ARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLST 300
Query: 814 EMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPA 873
EMG LQERI+STK G+ITS+QA+YVPADDLTDP+P+TTF HLD+T VLSR +A GIYPA
Sbjct: 301 EMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPA 360
Query: 874 IDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+DPL+S S L P IVGEEHY+ A VK LQ+YKEL+D
Sbjct: 361 VDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQD 399
Score = 44.6 bits (106), Expect = 2e-04
Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 39/233 (16%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
AV + L +G + T +PVG LGRI N GE +DN + + +
Sbjct: 72 AVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRS 131
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNV 286
AP + ++ TGIK +D + P +G + + G GKT + ++ I N K
Sbjct: 132 APAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGG 191
Query: 287 ICIYVCIGQ------------KISSLINVINKLKY------YNCMDYT----VVVAATAA 324
+ ++ +G+ K S +IN N + Y M+ + V TA
Sbjct: 192 VSVFGGVGERTREGNDLYMEMKESGVINEQN-IAESKVALVYGQMNEPPGARMRVGLTAL 250
Query: 325 DSAAEQYISPYTGCTIGEYFRDLG-QDCLIIYDDLTKHAWAYRQISLLLRRPP 376
T+ EYFRD+ QD L+ D++ + A ++S LL R P
Sbjct: 251 --------------TMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMP 289
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit,
nucleotide-binding domain. The F-ATPase is found in
bacterial plasma membranes, mitochondrial inner
membranes and in chloroplast thylakoid membranes. It has
also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to drive ATP synthesis and
hydrolyzes ATP to build the proton gradient. The
extrinisic membrane domain, F1, is composed of alpha,
beta, gamma, delta and epsilon subunits with a
stoichiometry of 3:3:1:1:1. The beta subunit of ATP
synthase is catalytic.
Length = 274
Score = 522 bits (1346), Expect = 0.0
Identities = 200/274 (72%), Positives = 225/274 (82%), Gaps = 1/274 (0%)
Query: 614 PILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVI 673
PI PVG TLGRI NVLG+PID +G I +KK PIH P+F Q ILETGIKVI
Sbjct: 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVI 60
Query: 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEM 733
DLL P+ KGGKIGLFGGAGVGKTV +MELI NIA H G SVF GVGER+REGND YHEM
Sbjct: 61 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEM 120
Query: 734 KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGT 792
KES VL K +L+YGQMNEP G R RVALTGL++AE FR+ G+DVLLFIDNI+RFT AG+
Sbjct: 121 KESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGS 180
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTF 852
EVSA+LGR PSAVGYQPTLA EMG LQERI+STK G+ITSVQA+YVPADDLTDP+P+TTF
Sbjct: 181 EVSALLGRMPSAVGYQPTLATEMGALQERITSTKKGSITSVQAVYVPADDLTDPAPATTF 240
Query: 853 THLDSTIVLSRQIAELGIYPAIDPLESYSKQLDP 886
HLD+T VLSR IAELGIYPA+DPL+S S+ LDP
Sbjct: 241 AHLDATTVLSRAIAELGIYPAVDPLDSTSRILDP 274
Score = 84.2 bits (209), Expect = 9e-18
Identities = 73/283 (25%), Positives = 123/283 (43%), Gaps = 15/283 (5%)
Query: 190 FEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSID 249
+PVG E LGRI N GE ID + K + + AP +++ + E L TGIK ID
Sbjct: 2 ISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVID 61
Query: 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVINKLK 308
+ P KG + + G GKT + ++ I N K ++ +G++ ++ +++K
Sbjct: 62 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMK 121
Query: 309 YYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD-LGQDCLIIYDDLTKHAWAYRQ 367
+ T +V + + TG T+ EYFRD GQD L+ D++ + A +
Sbjct: 122 ESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSE 181
Query: 368 ISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLE 427
+S LL R P V Y L + +++I + G++T+ +
Sbjct: 182 VSALLGRMPSA------VGY-QPTLATEMGAL------QERITSTKKGSITSVQAVYVPA 228
Query: 428 GDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
D+T P + D L + PA++ S SR+
Sbjct: 229 DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 271
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta and
epsilon subunits with a stoichiometry of 3:3:1:1:1. The
alpha subunit of the F1 ATP synthase can bind
nucleotides, but is non-catalytic.
Length = 274
Score = 492 bits (1269), Expect = e-169
Identities = 186/283 (65%), Positives = 221/283 (78%), Gaps = 9/283 (3%)
Query: 189 IFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSI 248
I ++PVG LLGR+V++ G ID K K R +E APGI+ R+SVNEPL TGIK+I
Sbjct: 1 IADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAI 60
Query: 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLK 308
D+MIPIG+GQRELIIGDRQTGKT IAIDTIINQK K V CIYV IGQK S++ V+ L+
Sbjct: 61 DAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLE 120
Query: 309 YYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368
+ M+YT+VVAATA+D A QY++PYTGC +GEYF D G+ LIIYDDL+K A AYRQ+
Sbjct: 121 EHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180
Query: 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEG 428
SLLLRRPPGREA+PGDVFYLHSRLLER++K+N G+LTA PIIET G
Sbjct: 181 SLLLRRPPGREAYPGDVFYLHSRLLERAAKLND---------ELGGGSLTALPIIETQAG 231
Query: 429 DVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVG 471
DV+++IPTNVISITDGQIFL+T+LFN RPAINVGLSVSRVG
Sbjct: 232 DVSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274
Score = 94.6 bits (236), Expect = 3e-21
Identities = 73/275 (26%), Positives = 131/275 (47%), Gaps = 17/275 (6%)
Query: 618 PVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLC 677
PVG+ LGR+++ LG+PID KG I +K++ PI + P + N L+TGIK ID +
Sbjct: 5 PVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMI 64
Query: 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKG---CSVFIGVGERSREGNDFYHEMK 734
P +G + + G GKT ++ I I KG +++ +G+++ ++
Sbjct: 65 PIGRGQRELIIGDRQTGKTAIAIDTI----INQKGKKVYCIYVAIGQKASTVAQVVKTLE 120
Query: 735 ESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEV 794
E ++ ++ ++P+ + TG ++ E F ++GK L+ D++ + +A ++
Sbjct: 121 EHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180
Query: 795 SAMLGRTPSAVGY-------QPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPS 847
S +L R P Y L E KL + G++T++ I A D++
Sbjct: 181 SLLLRRPPGREAYPGDVFYLHSRLLERAAKLND---ELGGGSLTALPIIETQAGDVSAYI 237
Query: 848 PSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSK 882
P+ + D I L + GI PAI+ S S+
Sbjct: 238 PTNVISITDGQIFLETDLFNKGIRPAINVGLSVSR 272
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha.
A small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F1 alpha subunit of this apparent
second ATP synthase.
Length = 497
Score = 444 bits (1145), Expect = e-147
Identities = 185/389 (47%), Positives = 260/389 (66%), Gaps = 9/389 (2%)
Query: 169 VLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIA 228
VL+ + +L G + T ++ ++PVG LLGR+V+ G +D R +E+ A
Sbjct: 74 VLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPA 133
Query: 229 PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288
P IMDR V PL TG+K ID++IPIG+GQRELI+GDRQTGKT IAIDTI+NQK +NV+C
Sbjct: 134 PPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLC 193
Query: 289 IYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLG 348
IY IGQ+ S++ V+ L+ + MDYT+VV D QYI+PY +IGE+F + G
Sbjct: 194 IYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFMEQG 253
Query: 349 QDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKK 408
+D LI+YDDLT+HA AYR++SLLLRRPPGREAFPGD+FY+HSRLLERS+ +N+
Sbjct: 254 RDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNE------- 306
Query: 409 IFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS 468
G+LTA PIIET +++++IPTN+ISITDGQI+L LF PA++VG SVS
Sbjct: 307 --ELGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVS 364
Query: 469 RVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKP 528
RVGG AQ + ++GD+++ AQ+ ELE+F++F + LD T+ + +G +I +KQ
Sbjct: 365 RVGGKAQLAAYRAVAGDLKLAYAQFEELETFARFGARLDENTRKTIEHGRRIRACLKQTQ 424
Query: 529 HENYSIVELIIILLIIKNRFFFKIPIKQI 557
++ + I ILL + N F + + +
Sbjct: 425 SSPLTVPQQIAILLALTNGLFDGVDLDAM 453
Score = 113 bits (284), Expect = 3e-26
Identities = 90/344 (26%), Positives = 159/344 (46%), Gaps = 21/344 (6%)
Query: 577 ISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPID 636
I+ N + ++G + G + ++ V TG+ + PVGD LGR+++ LG P+D
Sbjct: 62 IAFNVDEDEVG-----VVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLD 116
Query: 637 NKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKT 696
G + S + PI P ++ L+TG+KVID L P +G + + G GKT
Sbjct: 117 GGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKT 176
Query: 697 VNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNR 756
++ I N + C ++ +G+R+ ++E +D ++ + N+P G +
Sbjct: 177 AIAIDTILNQKGRNVLC-IYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235
Query: 757 LRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMG 816
SI E F G+DVL+ D++ + A E+S +L R P + +
Sbjct: 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHS 295
Query: 817 KLQER----ISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYP 872
+L ER G++T++ I A +++ P+ + D I LS + ELG+ P
Sbjct: 296 RLLERSTHLNEELGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLP 355
Query: 873 AIDPLESYSK-----QLDPYIVGEEHYKVANEVKFYLQKYKELK 911
A+D +S S+ QL Y VA ++K +++EL+
Sbjct: 356 AVDVGKSVSRVGGKAQLAAY------RAVAGDLKLAYAQFEELE 393
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta.
A small number of taxonomically diverse prokaryotic
species have what appears to be a second ATP synthase,
in addition to the normal F1F0 ATPase in bacteria and
A1A0 ATPase in archaea. These enzymes use ion gradients
to synthesize ATP, and in principle may run in either
direction. This model represents the F1 beta subunit of
this apparent second ATP synthase.
Length = 449
Score = 409 bits (1054), Expect = e-134
Identities = 170/333 (51%), Positives = 229/333 (68%), Gaps = 1/333 (0%)
Query: 581 KVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE 640
+V Q+ + VR IA T G+ R V D+G P+ PVG TL R+ +V G+ ID +
Sbjct: 37 EVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREP 96
Query: 641 INSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
+ +H PP + + + + ETGIK ID+L P +GGK GLFGGAGVGKTV +
Sbjct: 97 PKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLT 156
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
E+I N+ +H+G S+F G+GER REG + Y EMKE+ VLD +++GQMNEP G R RV
Sbjct: 157 EMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216
Query: 761 LTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819
T L++AE FR + +DVLL IDNI+RF AG+EVS +LG+ PS +GYQPTL E+ +L+
Sbjct: 217 HTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELE 276
Query: 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
ERI++T +G ITS+QA+YVPADD TDP+ TF+HL +++VLSR+ A G+YPAIDPL+S
Sbjct: 277 ERIATTSDGAITSIQAVYVPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQS 336
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
SK P IVGE HY +A EV+ L +Y+ELKD
Sbjct: 337 TSKMATPGIVGERHYDLAREVRQTLAQYEELKD 369
Score = 81.4 bits (201), Expect = 5e-16
Identities = 78/328 (23%), Positives = 138/328 (42%), Gaps = 24/328 (7%)
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
L +G + + PVG L R+ + G ID ++ +V + P + R S
Sbjct: 58 LARGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSS 117
Query: 237 VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ-KNKNVICIYVCIGQ 295
+E TGIK+ID ++P+ +G + + G GKT + + I N + I+ IG+
Sbjct: 118 KSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGE 177
Query: 296 KISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLII 354
+ + ++K +D TV+V + ++ +T T+ EYFR D QD L++
Sbjct: 178 RCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLL 237
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D++ + A ++S LL + P R + + + L ER I ++
Sbjct: 238 IDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEER-------------IATTSD 284
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS-----R 469
G +T+ + D T + S + L + PAI+ S S
Sbjct: 285 GAITSIQAVYVPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPG 344
Query: 470 VGGAAQYKIVKKLSGDIRIMLAQYRELE 497
+ G Y + ++ +R LAQY EL+
Sbjct: 345 IVGERHYDLARE----VRQTLAQYEELK 368
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 355 bits (912), Expect = e-112
Identities = 199/448 (44%), Positives = 280/448 (62%), Gaps = 44/448 (9%)
Query: 139 NIKFANNTVLSGQINGTTGYEEAAAQGFV----------AVLIDDLKNLTQGQKCFCTEK 188
N A NT++ Q++ TT A G V +L+D++ + GQK T K
Sbjct: 59 NPGVAYNTIIMIQVSPTT-----FAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGK 113
Query: 189 IFEIPVGFELLGRIVNSKGEFID----NKKKFLIKNRETVEKI---APGIMDRESVNEPL 241
+ IPVG +LG++VN G + + + L+++ +T+ K+ AP I+ R VN L
Sbjct: 114 LLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNL 173
Query: 242 LTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKN--------VICIYVCI 293
LTG K++D+MIPIG+GQRELI+GDRQTGKT+IA+ TIINQ N VI IYV I
Sbjct: 174 LTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSI 233
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLI 353
GQ+ S++ + L+ Y + YT V+AATAA+ A QY++PY+G T+GEYF + G+ CL
Sbjct: 234 GQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLC 293
Query: 354 IYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKN 413
+YDDL+K A AYRQISLLLRRPPGREA+PGDVFYLHSRLLER++ ++ K
Sbjct: 294 VYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSP---------GKG 344
Query: 414 NGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGA 473
G++TA PI+ETL DVT++I TNVISITDGQI+LDT LF RPA+N+GLSVSRVG +
Sbjct: 345 GGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSS 404
Query: 474 AQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYS 533
AQ +K ++G ++ +LA+YR+L + S S + V + G + L QK +
Sbjct: 405 AQNVAMKAVAGKLKGILAEYRKLAADSVGGSQVQTVP---MIRGARFVALFNQKNPSFF- 460
Query: 534 IVELIIILLIIKNRFFFKIPIKQIELFE 561
+ ++ L N + + + +L+E
Sbjct: 461 -MNALVSLYACLNGYLDDVKVNYAKLYE 487
Score = 71.2 bits (174), Expect = 1e-12
Identities = 76/344 (22%), Positives = 151/344 (43%), Gaps = 29/344 (8%)
Query: 594 IAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPID------NKGEINSKKK- 646
I N ++ V+ TGK + PVG LG+++N LG + ++ + S++
Sbjct: 94 ILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTL 153
Query: 647 SPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKT-------VNM 699
+ P ++ N L TG K +D + P +G + + G GKT +N
Sbjct: 154 GKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQ 213
Query: 700 MELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRV 759
+ + + I ++ S+++ +G+R + ++ L +++ EP+G +
Sbjct: 214 VRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLA 273
Query: 760 ALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819
+G+++ E F N G+ L D++ + +A ++S +L R P Y + +L
Sbjct: 274 PYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLL 333
Query: 820 ER---ISSTK-NGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
ER +S K G++T++ + ++D+T + + D I L ++ G PA++
Sbjct: 334 ERAAMLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVN 393
Query: 876 PLESYSKQLDPYIVGEEHYK-----VANEVKFYLQKYKELKDTS 914
S S+ VG VA ++K L +Y++L S
Sbjct: 394 IGLSVSR------VGSSAQNVAMKAVAGKLKGILAEYRKLAADS 431
>gnl|CDD|235951 PRK07165, PRK07165, F0F1 ATP synthase subunit alpha; Validated.
Length = 507
Score = 321 bits (826), Expect = e-100
Identities = 158/398 (39%), Positives = 229/398 (57%), Gaps = 31/398 (7%)
Query: 197 ELLGRIVNSKGEFIDNKKKFLIK-----NRETVEKIAPGIMDRESVNEPLLTGIKSIDSM 251
E G+I++ G I + + + N ++ +A G+M +++NE L TGI +ID +
Sbjct: 78 EYFGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLL 137
Query: 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYN 311
IPIGKGQRELIIGDRQTGKT IA++TIINQKN NV CIYV IGQK +L + LK ++
Sbjct: 138 IPIGKGQRELIIGDRQTGKTHIALNTIINQKNTNVKCIYVAIGQKRENLSRIYETLKEHD 197
Query: 312 CMDYTVVVAATAADSAAEQYISPYTGCTIGE---YFRDLGQDCLIIYDDLTKHAWAYRQI 368
+ T+++ A + S EQY++PY E Y D LI++DDLTKHA YR+I
Sbjct: 198 ALKNTIIIDA-PSTSPYEQYLAPYVAMAHAENISYN----DDVLIVFDDLTKHANIYREI 252
Query: 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEG 428
+LL +P G+EAFPGD+F+ HS+LLER+ K KN T+TA PI++T++
Sbjct: 253 ALLTNKPVGKEAFPGDMFFAHSKLLERAGKF------------KNRKTITALPILQTVDN 300
Query: 429 DVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRI 488
D+TS I +N+ISITDGQI ++LF S PAI++ LSVSR G + Q K + K++G+I
Sbjct: 301 DITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSKTITKVAGEISK 360
Query: 489 MLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVELIIILLIIKNRF 548
+ Y+ S DL+ T L+ G+ I + QK YS +++I +I
Sbjct: 361 IYRAYKRQLKLSMLDYDLNKETSDLLFKGKMIEKMFNQKGFSLYSYRFVLLISKLISWGL 420
Query: 549 FFKIPIKQ------IELFEINIIKYFRIINLKNNISIN 580
+ +Q L E + +KNN ++
Sbjct: 421 LKDVKDEQKALDFIDYLIENDPDAKKIFNKIKNNEDVD 458
Score = 46.1 bits (110), Expect = 7e-05
Identities = 72/280 (25%), Positives = 112/280 (40%), Gaps = 55/280 (19%)
Query: 625 GRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFN-----------NNILETGIKVI 673
G+I+++ G+ I + + KK +T + IFN N L TGI I
Sbjct: 81 GKIIDIDGNIIYPEAQNPLSKKFLPNT------SSIFNLAHGLMTVKTLNEQLYTGIIAI 134
Query: 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEM 733
DLL P KG + + G GKT + I N + C +++ +G++ + Y +
Sbjct: 135 DLLIPIGKGQRELIIGDRQTGKTHIALNTIINQKNTNVKC-IYVAIGQKRENLSRIYETL 193
Query: 734 KESNVLDKVSLIYGQMNEPSGNRLRVALT---GLSIAEEFRNSGKDVLLFID------NI 784
KE + L +I + PS + L ++ AE + DVL+ D NI
Sbjct: 194 KEHDALKNTIII----DAPSTSPYEQYLAPYVAMAHAENISYN-DDVLIVFDDLTKHANI 248
Query: 785 YRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM--------GKLQERISSTKNG-TITSVQA 835
YR E++ + + P E KL ER KN TIT++
Sbjct: 249 YR------EIALLTNK--------PVGKEAFPGDMFFAHSKLLERAGKFKNRKTITALPI 294
Query: 836 IYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
+ +D+T S + D IV S + G PAID
Sbjct: 295 LQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAID 334
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 308 bits (792), Expect = 3e-99
Identities = 102/226 (45%), Positives = 137/226 (60%), Gaps = 13/226 (5%)
Query: 243 TGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLIN 302
TGI++ID ++PIGKGQR I G TGKT + N K +V+ +YV IG++ +
Sbjct: 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAK-ADVVEVYVLIGERGREVAE 59
Query: 303 VINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362
I +L + TVVVAAT+ + AE+Y++PYT TI EYFRD G+D L++ D LT+ A
Sbjct: 60 FIEELLGEGALKRTVVVAATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRFA 119
Query: 363 WAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPI 422
A R+ISLLL PPGRE +PG +F +RLLER+ K+ + G++TA P
Sbjct: 120 RALREISLLLGEPPGREGYPGSLFSDLARLLERAGKV------------EGGGSITALPT 167
Query: 423 IETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS 468
+ GD+T IP N ISITDGQI L L PAI++ LSVS
Sbjct: 168 VLVPGGDITDPIPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213
Score = 258 bits (661), Expect = 3e-80
Identities = 91/215 (42%), Positives = 127/215 (59%), Gaps = 3/215 (1%)
Query: 668 TGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGN 727
TGI+ IDLL P KG +IG+FGG+G GKTV + + RN + V++ +GER RE
Sbjct: 1 TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNA--KADVVEVYVLIGERGREVA 58
Query: 728 DFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRF 787
+F E+ L + ++ +EP R T L+IAE FR+ GKDVLL +D++ RF
Sbjct: 59 EFIEELLGEGALKRTVVVAATSDEPPAERYLAPYTALTIAEYFRDQGKDVLLLLDSLTRF 118
Query: 788 TLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKN-GTITSVQAIYVPADDLTDP 846
A E+S +LG P GY +L ++ +L ER + G+IT++ + VP D+TDP
Sbjct: 119 ARALREISLLLGEPPGREGYPGSLFSDLARLLERAGKVEGGGSITALPTVLVPGGDITDP 178
Query: 847 SPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYS 881
P T + D IVLSR++AE GIYPAID L S S
Sbjct: 179 IPDNTISITDGQIVLSRELAERGIYPAIDILLSVS 213
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway
ATPase [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 441
Score = 237 bits (606), Expect = 2e-69
Identities = 118/329 (35%), Positives = 175/329 (53%), Gaps = 8/329 (2%)
Query: 586 IGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKK 645
E V + F G+ VV TG+P+ PVGD LGR+L+ LG P+D G + +
Sbjct: 67 FNEERVLLMPFEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTE 126
Query: 646 KSPIHTLPPK-FSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIR 704
+ P+ PP + L+TG++ ID L KG +IG+F G+GVGK+ + + R
Sbjct: 127 RRPLDAPPPNPLKRRPIEE-PLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIAR 185
Query: 705 NIAIEHKGCSVFIG-VGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTG 763
N + I +GER RE +F + L + ++ +E + RL+ A T
Sbjct: 186 NTEAD----VNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTA 241
Query: 764 LSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERIS 823
+IAE FR+ GK VLL +D++ RF +A E+ G P+ GY P++ E+ +L ER
Sbjct: 242 TTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAG 301
Query: 824 STKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQ 883
+ G+IT+ + V DD+ DP + LD IVLSR +AE G YPAID L S S+
Sbjct: 302 NGDKGSITAFYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISR- 360
Query: 884 LDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+ P IV EEH K A ++ L +Y+E +D
Sbjct: 361 VMPQIVSEEHRKAARRLRQLLSRYEENED 389
Score = 184 bits (469), Expect = 2e-50
Identities = 108/336 (32%), Positives = 166/336 (49%), Gaps = 33/336 (9%)
Query: 171 IDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPG 230
+ ++ ++ G + T + +PVG LLGR+++ G +D R ++ P
Sbjct: 77 FEPVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPN 136
Query: 231 IMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTT----IAIDTIINQKNKNV 286
+ R + EPL TG+++ID ++ GKGQR I GK+T IA +T + + NV
Sbjct: 137 PLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMIARNT---EADVNV 193
Query: 287 ICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD 346
I + IG++ + I K + +VVV AT+ +SA + + +T TI EYFRD
Sbjct: 194 IAL---IGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEYFRD 250
Query: 347 LGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEK 406
G+ L+I D LT+ A A R+I L PP + +P VF RLLER+
Sbjct: 251 QGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAG--------- 301
Query: 407 KKIFNKNNGTLTAFPIIETLEGD-VTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGL 465
N + G++TAF + +EGD + I V SI DG I L L + + PAI+V
Sbjct: 302 ----NGDKGSITAFYTV-LVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLA 356
Query: 466 SVSRVGGAA----QYKIVKKLSGDIRIMLAQYRELE 497
S+SRV K ++L R +L++Y E E
Sbjct: 357 SISRVMPQIVSEEHRKAARRL----RQLLSRYEENE 388
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins [Energy metabolism, ATP-proton
motive force interconversion].
Length = 440
Score = 217 bits (555), Expect = 3e-62
Identities = 112/320 (35%), Positives = 175/320 (54%), Gaps = 7/320 (2%)
Query: 595 AFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGE-INSKKKSPIHTLP 653
+ G++ + V+ TG+ + VGD LGR+L+ LG PID KG+ +++ + + T P
Sbjct: 75 PYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAP 134
Query: 654 PKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC 713
+ IL TG++ ID L KG +IG+F G+GVGK+ + + RN
Sbjct: 135 INPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARN---TEADV 191
Query: 714 SVFIGVGERSREGNDFY-HEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN 772
+V +GER RE +F H++ E L + ++ ++ RL+ A +IAE FR+
Sbjct: 192 NVIALIGERGREVREFIEHDLGEEG-LKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRD 250
Query: 773 SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITS 832
GKDVLL +D++ RF +A E+ G P+ GY P++ + +L ER ++ G+IT+
Sbjct: 251 QGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITA 310
Query: 833 VQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEE 892
+ V DD+ +P + LD IVLSR +A+ G YPAID L S S+ L IV EE
Sbjct: 311 FYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISR-LMTAIVSEE 369
Query: 893 HYKVANEVKFYLQKYKELKD 912
H + A + + L KYK+ +D
Sbjct: 370 HRRAARKFRELLSKYKDNED 389
Score = 166 bits (421), Expect = 3e-44
Identities = 106/361 (29%), Positives = 162/361 (44%), Gaps = 31/361 (8%)
Query: 180 GQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNR-ETVEKIAPGIMDRESVN 238
G K T + I VG LLGR+++ G+ ID K KFL E + + R +
Sbjct: 85 GSKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIR 144
Query: 239 EPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKIS 298
E L TG++SID ++ +GKGQR I GK+T+ + I +V I + IG++
Sbjct: 145 EILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTL-LGMIARNTEADVNVIAL-IGERGR 202
Query: 299 SLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDL 358
+ I + +VVV AT+ S + Y I EYFRD G+D L++ D +
Sbjct: 203 EVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSV 262
Query: 359 TKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLT 418
T+ A A R+I L PP + + VF RLLER+ K G++T
Sbjct: 263 TRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGASGK-------------GSIT 309
Query: 419 AFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVG----GAA 474
AF + D+ I +V I DG I L L + PAI+V S+SR+
Sbjct: 310 AFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVSEE 369
Query: 475 QYKIVKKLSGDIRIMLAQYRELESF-----SKFSSDLDIVTKTQLYNGEKISLLMKQKPH 529
+ +K R +L++Y++ E + SD ++ Y K+ +KQ +
Sbjct: 370 HRRAARK----FRELLSKYKDNEDLIRIGAYQRGSDRELDFAIAKY--PKLERFLKQGIN 423
Query: 530 E 530
E
Sbjct: 424 E 424
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 413
Score = 211 bits (539), Expect = 2e-60
Identities = 118/324 (36%), Positives = 177/324 (54%), Gaps = 18/324 (5%)
Query: 596 FGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPK 655
G GI ++V+ TG+P+ VG LGR+L+ LG P+D +G I ++ P+ PP
Sbjct: 51 LGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPN 110
Query: 656 -FSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCS 714
+ LETGIK ID L KG ++G+F G+GVGK+ + + RN + +
Sbjct: 111 PLKRPRIRD-PLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKAD---IN 166
Query: 715 VFIGVGERSREGNDFYHE------MKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAE 768
V +GER RE DF + +K S V+ S ++P+ RL+ A T +IAE
Sbjct: 167 VIALIGERGREVRDFIEKDLGEEGLKRSVVVVATS------DQPALMRLKAAFTATAIAE 220
Query: 769 EFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNG 828
FR+ GKDVLL +D++ RF +A E+ +G P+ GY P++ + KL ER +++ G
Sbjct: 221 YFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQKG 280
Query: 829 TITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYI 888
+IT + V DD+ +P LD IVLSR++A YPAID L S S+ + I
Sbjct: 281 SITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSR-VMNEI 339
Query: 889 VGEEHYKVANEVKFYLQKYKELKD 912
V EEH ++A +++ L YKE +D
Sbjct: 340 VSEEHKELAGKLRELLAVYKEAED 363
Score = 159 bits (405), Expect = 2e-42
Identities = 116/371 (31%), Positives = 176/371 (47%), Gaps = 30/371 (8%)
Query: 180 GQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNE 239
G T + I VG LLGR+++ G +D + + + ++ P + R + +
Sbjct: 60 GSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRD 119
Query: 240 PLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTT----IAIDTIINQKNKNVICIYVCIGQ 295
PL TGIK+ID ++ IGKGQR I GK+T IA + + + NVI + IG+
Sbjct: 120 PLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNA---KADINVIAL---IGE 173
Query: 296 KISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIY 355
+ + + I K + +VVV AT+ A + + +T I EYFRD G+D L++
Sbjct: 174 RGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMM 233
Query: 356 DDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNG 415
D +T+ A A R+I L + PP + VF L +LLERS N G
Sbjct: 234 DSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSG-------------NSQKG 280
Query: 416 TLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ 475
++T F + D+ I V I DG I L L N+ PAI+V SVSRV
Sbjct: 281 SITGFYTVLVDGDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIV 340
Query: 476 YKIVKKLSGDIRIMLAQYRELESF-----SKFSSDLDIVTKTQLYNGEKISLLMKQKPHE 530
+ K+L+G +R +LA Y+E E K S+ I + EKI+ +KQ E
Sbjct: 341 SEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYI--EKINSFLKQGIDE 398
Query: 531 NYSIVELIIIL 541
++ E + +L
Sbjct: 399 KFTFEETVQLL 409
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 206 bits (526), Expect = 1e-59
Identities = 103/299 (34%), Positives = 165/299 (55%), Gaps = 4/299 (1%)
Query: 614 PILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVI 673
P+ PVGD LGR+L+ G+P+D KG + + + P+ PP + + +L TG++ I
Sbjct: 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAI 60
Query: 674 DLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEM 733
D L KG ++G+F G+GVGK+ + + R + +V +GER RE +F +
Sbjct: 61 DGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGERGREVREFIEKD 117
Query: 734 KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTE 793
L + ++ +E R++ A T +IAE FR+ GKDVLL +D++ RF +A E
Sbjct: 118 LGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQRE 177
Query: 794 VSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFT 853
+ G P+ GY P++ + +L ER ++ G+IT+ + V DDL +P +
Sbjct: 178 IGLAAGEPPTTKGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLNEPIADAVRS 237
Query: 854 HLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
LD IVLSR +A G YPAID L+S S+ L +V EH + A +++ L Y+E++D
Sbjct: 238 ILDGHIVLSRALAAAGHYPAIDVLKSISR-LMNAVVTPEHKEAARKLRELLSAYQEVED 295
Score = 162 bits (413), Expect = 3e-44
Identities = 104/311 (33%), Positives = 159/311 (51%), Gaps = 23/311 (7%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDS 250
+PVG LLGR++++ GE +D K + R + + P + R ++E L TG+++ID
Sbjct: 3 SVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDG 62
Query: 251 MIPIGKGQRELIIGDRQTGKTT----IAIDTIINQKNKNVICIYVCIGQKISSLINVINK 306
++ +GKGQR I GK+T IA T + NVI + IG++ + I K
Sbjct: 63 LLTVGKGQRLGIFAGSGVGKSTLLGMIARGT---TADVNVIAL---IGERGREVREFIEK 116
Query: 307 LKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
+ +VVV AT+ +S + + YT I EYFRD G+D L++ D LT+ A A R
Sbjct: 117 DLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQR 176
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+I L PP + +P VF L RLLER+ N + G++TAF +
Sbjct: 177 EIGLAAGEPPTTKGYPPSVFALLPRLLERAG-------------NSDKGSITAFYTVLVE 223
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
D+ I V SI DG I L L + + PAI+V S+SR+ A K+ + +
Sbjct: 224 GDDLNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKL 283
Query: 487 RIMLAQYRELE 497
R +L+ Y+E+E
Sbjct: 284 RELLSAYQEVE 294
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 206 bits (525), Expect = 2e-58
Identities = 112/322 (34%), Positives = 172/322 (53%), Gaps = 10/322 (3%)
Query: 595 AFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI---NSKKKSPIHT 651
G +GI + V+ TG+P+ VG+ LGR+L+ G P+D KGE+ + +
Sbjct: 56 PLGELHGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDAD 115
Query: 652 LPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHK 711
PP S Q + L TG++ ID L +G +IG+F GAGVGK+ + + R + +
Sbjct: 116 PPPPMSRQPIDQ-PLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASAD-- 172
Query: 712 GCSVFIGVGERSREGNDFY-HEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEF 770
+V +GER RE +F H + E + L+ + PS RL+ A T +IAE F
Sbjct: 173 -VNVIALIGERGREVREFIEHHLGEEG-RKRSVLVVSTSDRPSLERLKAAYTATAIAEYF 230
Query: 771 RNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTI 830
R+ GK VLL +D++ RF A E+ G P+ GY P++ + +L ER + + G+I
Sbjct: 231 RDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNGEKGSI 290
Query: 831 TSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVG 890
T++ + V DD+ DP + LD IVLSR +AE YPAID L S S+ + +V
Sbjct: 291 TALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVM-SQVVS 349
Query: 891 EEHYKVANEVKFYLQKYKELKD 912
EH + A +++ L YKE++
Sbjct: 350 TEHRRAAGKLRRLLATYKEVEL 371
Score = 179 bits (457), Expect = 3e-49
Identities = 103/338 (30%), Positives = 164/338 (48%), Gaps = 19/338 (5%)
Query: 164 QGFVAVL--IDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNR 221
G A+L + +L ++ G + T + I VG LLGR+++ G +D K +
Sbjct: 48 TGDEALLSPLGELHGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEI 107
Query: 222 ET--VEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTII 279
ET ++ P M R+ +++PL TG+++ID ++ G+GQR I GK+T+ + I
Sbjct: 108 ETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTL-LGMIA 166
Query: 280 NQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCT 339
+ +V + IG++ + I +V+V +T+ + E+ + YT
Sbjct: 167 RGASADV-NVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATA 225
Query: 340 IGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKI 399
I EYFRD G+ L++ D LT+ A A R+I L PP R +P VF RLLER+
Sbjct: 226 IAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAG-- 283
Query: 400 NKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRP 459
N G++TA + D+ I V SI DG I L L N+ P
Sbjct: 284 -----------NGEKGSITALYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYP 332
Query: 460 AINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELE 497
AI+V S+SRV ++ +G +R +LA Y+E+E
Sbjct: 333 AIDVLASLSRVMSQVVSTEHRRAAGKLRRLLATYKEVE 370
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively.
Length = 418
Score = 202 bits (516), Expect = 3e-57
Identities = 110/333 (33%), Positives = 166/333 (49%), Gaps = 13/333 (3%)
Query: 586 IGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI-NSK 644
+ V + F G+ V P+ LGR++N LG+PID KG + +
Sbjct: 43 FNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGE 102
Query: 645 KKSPIHTLPPK-FSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELI 703
++ P+ PP S + TG++VID P +G ++G+F G+GVGK+ + L
Sbjct: 103 RRYPLRASPPPAMSRARVGEPLD-TGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLA 161
Query: 704 RNIAIEHKGCSVFIG-VGERSREGNDFY-HEMKESNVLDKVSLIYGQMNEPSGNRLRVAL 761
RN + V I VGER RE +F ++ E L + ++ +E R + A
Sbjct: 162 RNTDAD----VVVIALVGERGREVREFLEDDLGEEG-LKRSVVVVATSDESPLMRRQAAY 216
Query: 762 TGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQER 821
T +IAE FR+ GKDVLL +D++ RF +A E+ G P A GY P++ E+ +L ER
Sbjct: 217 TATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLER 276
Query: 822 --ISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G+IT + + V DD +P LD IVL R IAE G YPAI+ L S
Sbjct: 277 AGPGAEGKGSITGIFTVLVDGDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLAS 336
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+ L P + E K+ ++ L +Y+E +D
Sbjct: 337 VSR-LAPRVWSPEERKLVRRLRALLARYEETED 368
Score = 150 bits (381), Expect = 4e-39
Identities = 98/324 (30%), Positives = 151/324 (46%), Gaps = 24/324 (7%)
Query: 180 GQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLI-KNRETVEKIAPGIMDRESVN 238
G F E + LGR++N+ GE ID K + R + P M R V
Sbjct: 62 GCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVG 121
Query: 239 EPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKIS 298
EPL TG++ ID+ +P+ +GQR I GK+T+ + + + +V+ I + +G++
Sbjct: 122 EPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTL-LSMLARNTDADVVVIAL-VGERGR 179
Query: 299 SLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDL 358
+ + + +VVV AT+ +S + + YT I EYFRD G+D L++ D +
Sbjct: 180 EVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDSV 239
Query: 359 TKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLT 418
T+ A A R+I L PP + VF RLLER+ + G++T
Sbjct: 240 TRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGP-----------GAEGKGSIT 288
Query: 419 AFPIIETLEGD-VTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----VGGA 473
+ ++GD + V I DG I LD + PAINV SVSR V
Sbjct: 289 GIFTV-LVDGDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSP 347
Query: 474 AQYKIVKKLSGDIRIMLAQYRELE 497
+ K+V++L R +LA+Y E E
Sbjct: 348 EERKLVRRL----RALLARYEETE 367
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 200 bits (510), Expect = 2e-56
Identities = 108/330 (32%), Positives = 171/330 (51%), Gaps = 28/330 (8%)
Query: 596 FGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPK 655
+ G++ V P+ PVGD LGR+++ LG P+D KG +++ ++ P++ P
Sbjct: 51 LEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPI- 109
Query: 656 FSNQIFN-------NNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAI 708
N + L+ G++ I+ L +G ++G+F G+GVGK+ + + R
Sbjct: 110 ------NPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEA 163
Query: 709 EHKGCSVFIG-VGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIA 767
+ V +G +GER RE +F ++ L + ++ +E RLR A +IA
Sbjct: 164 D----VVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIA 219
Query: 768 EEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQER--ISST 825
E FR+ GKDVLL +D++ RF +A E++ +G P+ GY P++ ++ +L ER
Sbjct: 220 EYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEE 279
Query: 826 KNGTITSVQAIY---VPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSK 882
G+IT A Y V DD DP LD IVLSR++AE G YPAID L S S+
Sbjct: 280 GKGSIT---AFYTVLVEGDDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISR 336
Query: 883 QLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+ P +V EH + A K L +Y+E +D
Sbjct: 337 -VMPDVVSPEHRQAARRFKQLLSRYQENRD 365
Score = 149 bits (378), Expect = 1e-38
Identities = 104/386 (26%), Positives = 175/386 (45%), Gaps = 50/386 (12%)
Query: 171 IDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPG 230
++D++ L G + F E +PVG LLGR+++ G +D K R +
Sbjct: 51 LEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPIN 110
Query: 231 IMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTT----IAIDTIINQKNKNV 286
+ R ++EPL G+++I+ ++ +G+GQR I GK+T +A T + + V
Sbjct: 111 PLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYT---EADVVV 167
Query: 287 ICIYVCIGQK---ISSLINVI---NKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTI 340
+ + IG++ + I I L +VVVAATA +S + + + I
Sbjct: 168 VGL---IGERGREVKEFIEDILGEEGLAR------SVVVAATADESPLMRLRAAFYATAI 218
Query: 341 GEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKIN 400
EYFRD G+D L++ D LT+ A A R+I+L + PP + +P VF +L+ER+
Sbjct: 219 AEYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGN-- 276
Query: 401 KYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSF-IPTNVISITDGQIFLDTNLFNSNYRP 459
+ G++TAF + EGD I +I DG I L L + P
Sbjct: 277 ---------GEEGKGSITAFYTVLV-EGDDQQDPIADAARAILDGHIVLSRELAEQGHYP 326
Query: 460 AINVGLSVSRVGGAA----QYKIVKKLSGDIRIMLAQYRELESF-----SKFSSDLDIVT 510
AI++ S+SRV + ++ + +L++Y+E + SD ++
Sbjct: 327 AIDILASISRVMPDVVSPEHRQAARRF----KQLLSRYQENRDLISIGAYQAGSDPELDQ 382
Query: 511 KTQLYNGEKISLLMKQKPHENYSIVE 536
LY +I ++Q E S E
Sbjct: 383 AIALY--PRIEAFLQQGMRERASFEE 406
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 204 bits (521), Expect = 6e-56
Identities = 72/145 (49%), Positives = 86/145 (59%), Gaps = 23/145 (15%)
Query: 53 TGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGL 112
GPRYCPSIEDKI +F + HQIFLEPEG + E+Y NG+STSL + Q ++++ I GL
Sbjct: 269 VGPRYCPSIEDKIVRFADKDRHQIFLEPEGLDTNEVYPNGISTSLPEDVQLEMLRSIPGL 328
Query: 113 NYSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA---- 168
+ I+R Y IEYDY DPR L TL K +GQINGTTGYEEAAAQG +A
Sbjct: 329 ENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINA 388
Query: 169 -------------------VLIDDL 174
VLIDDL
Sbjct: 389 ALKVQGEPFILKRSEAYIGVLIDDL 413
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 186 bits (473), Expect = 3e-51
Identities = 107/316 (33%), Positives = 163/316 (51%), Gaps = 6/316 (1%)
Query: 597 GNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKF 656
G GI NT V TG VG+ LGR+L+ LG P D P++ P
Sbjct: 77 GEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAP 136
Query: 657 SNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVF 716
++ L G++VID L +G ++G+F AG GK+ + LIR+ ++ +V
Sbjct: 137 MSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD---VTVL 193
Query: 717 IGVGERSREGNDFY-HEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGK 775
+GER RE +F ++ E L K L+ + PS R + SIAE FR+ GK
Sbjct: 194 ALIGERGREVREFIESDLGEEG-LRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGK 252
Query: 776 DVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQA 835
VLL +D++ RF A E+ G P+ GY P++ + +L ER + G+IT++
Sbjct: 253 RVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDKGSITALYT 312
Query: 836 IYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYK 895
+ V DD+T+P T + LD I+LSR++A YPAID L S S+ ++ IV +EH
Sbjct: 313 VLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQ-IVSKEHKT 371
Query: 896 VANEVKFYLQKYKELK 911
A ++ L KY+E++
Sbjct: 372 WAGRLRELLAKYEEVE 387
Score = 151 bits (384), Expect = 2e-39
Identities = 100/350 (28%), Positives = 163/350 (46%), Gaps = 22/350 (6%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGI 245
T + ++ VG LLGR+++ G+ D V AP M R + PL G+
Sbjct: 91 TGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGV 150
Query: 246 KSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNV-ICIYVCIGQKISSLINVI 304
+ ID ++ G+GQR I GK+T+ + ++I ++ V + + IG++ + I
Sbjct: 151 RVIDGLLTCGEGQRMGIFAAAGGGKSTL-LASLI--RSAEVDVTVLALIGERGREVREFI 207
Query: 305 NKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWA 364
+ V+V AT+ + E+ + + +I EYFRD G+ L++ D +T+ A A
Sbjct: 208 ESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARA 267
Query: 365 YRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIE 424
R+I L PP R +P VF RL+ER+ + +K G++TA +
Sbjct: 268 QREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSDK-------------GSITALYTV- 313
Query: 425 TLEG-DVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLS 483
+EG D+T + SI DG I L L +N+ PAI+V S SRV K K +
Sbjct: 314 LVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWA 373
Query: 484 GDIRIMLAQYRELESFSK---FSSDLDIVTKTQLYNGEKISLLMKQKPHE 530
G +R +LA+Y E+E + + D + I ++Q HE
Sbjct: 374 GRLRELLAKYEEVELLLQIGEYQKGQDKEADQAIERIGAIRGFLRQGTHE 423
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated.
Length = 428
Score = 183 bits (467), Expect = 2e-50
Identities = 108/336 (32%), Positives = 173/336 (51%), Gaps = 14/336 (4%)
Query: 584 QQIGENIVRTI--AFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLG---DPIDNK 638
Q +G RTI GN G+ R ++ TGKP+ VG+ LG +L+ G + D
Sbjct: 47 QVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGKIVERFDAP 106
Query: 639 GEINSKKKS-PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTV 697
+ + I PP ++ + L TG++ ID L G ++G+F AG GKT
Sbjct: 107 PTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTS 166
Query: 698 NMMELIRNIAIEHKGCSVF-IG-VGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGN 755
M N+ IEH VF IG +GER RE +F ++ S+ +K L+Y + S +
Sbjct: 167 LM-----NMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVD 221
Query: 756 RLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815
R AL ++AE FR+ GK V+LFID++ R+ A +V+ G P+ GY ++ + +
Sbjct: 222 RCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSL 281
Query: 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
+L ER +T G+IT+ + + +++ DP + LD I LSR++A G YPAID
Sbjct: 282 PRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAID 341
Query: 876 PLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELK 911
L+S S+ + +H ++A + L + +EL+
Sbjct: 342 VLKSVSRVFGQ-VTDPKHRQLAAAFRKLLTRLEELQ 376
Score = 135 bits (341), Expect = 7e-34
Identities = 90/320 (28%), Positives = 153/320 (47%), Gaps = 23/320 (7%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDN-----KKKFLIKNRETVEKIAPGIMDRESVNEP 240
T K + VG LLG +++ G+ ++ + + R ++ P +R + EP
Sbjct: 76 TGKPLSVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERV-IDVAPPSYAERRPIREP 134
Query: 241 LLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSL 300
L+TG+++ID ++ G GQR I GKT++ ++ +I +V I + IG++ +
Sbjct: 135 LITGVRAIDGLLTCGVGQRMGIFASAGCGKTSL-MNMLIEHSEADVFVIGL-IGERGREV 192
Query: 301 INVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTK 360
+ L+ + + V+V AT+ S+ ++ + T+ EYFRD G+ ++ D +T+
Sbjct: 193 TEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTR 252
Query: 361 HAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAF 420
+A A R ++L P R +P VF RLLER G++TAF
Sbjct: 253 YARALRDVALAAGELPARRGYPASVFDSLPRLLERPG-------------ATLAGSITAF 299
Query: 421 PIIETLEGDVTS-FIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIV 479
+ LE + I + SI DG I+L L + PAI+V SVSRV G
Sbjct: 300 YTV-LLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKH 358
Query: 480 KKLSGDIRIMLAQYRELESF 499
++L+ R +L + EL+ F
Sbjct: 359 RQLAAAFRKLLTRLEELQLF 378
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 186 bits (474), Expect = 9e-50
Identities = 76/152 (50%), Positives = 92/152 (60%), Gaps = 26/152 (17%)
Query: 53 TGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGL 112
GPRYCPSIEDKI +F + + HQIFLEPEG + E+Y NGLSTSL + Q+++I+ I GL
Sbjct: 269 VGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGL 328
Query: 113 NYSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA---- 168
+ I+R Y IEYDY DPR L TL K +GQINGTTGYEEAAAQG +A
Sbjct: 329 ENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINA 388
Query: 169 --------------------VLIDDLKNLTQG 180
VLIDDL +T+G
Sbjct: 389 ALKVQGKEPFILRRDEAYIGVLIDDL--VTKG 418
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 176 bits (448), Expect = 7e-48
Identities = 111/316 (35%), Positives = 164/316 (51%), Gaps = 6/316 (1%)
Query: 596 FGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDN--KGE-INSKKKSPIHTL 652
G G+ ++ V+ TG P+ G+ LGR+LN LG+PID KG N + PI
Sbjct: 75 LGELTGVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRA 134
Query: 653 PPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKG 712
PP ++ IL TG++ ID + +G +IG+F GAGVGK+ + + RN E
Sbjct: 135 PPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNA--EEAD 192
Query: 713 CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRN 772
+V +GER RE +F + + ++ ++ S RL A G +IAE FR+
Sbjct: 193 VNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRD 252
Query: 773 SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITS 832
GK V+L +D++ RF A EV G P+ GY P++ + KL ER ++ GTIT+
Sbjct: 253 QGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGASDKGTITA 312
Query: 833 VQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEE 892
+ V DD+ +P + LD IVLS +A+ YPAID L S S+ L IV EE
Sbjct: 313 FYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTA-IVPEE 371
Query: 893 HYKVANEVKFYLQKYK 908
++ + + L KYK
Sbjct: 372 QRRIIGKAREVLAKYK 387
Score = 136 bits (345), Expect = 2e-34
Identities = 102/353 (28%), Positives = 165/353 (46%), Gaps = 24/353 (6%)
Query: 192 IPVGFELLGRIVNSKGEFID-NKKKFLIKNRET--VEKIAPGIMDRESVNEPLLTGIKSI 248
I G LLGR++N GE ID K L ET + + P + R + L TG++ I
Sbjct: 96 IRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCI 155
Query: 249 DSMIPIGKGQRELIIGDRQTGKTTI--AIDTIINQKNKNVICIYVCIGQKISSLINVINK 306
D M+ + +GQR I GK+++ I + + NVI + IG++ + I
Sbjct: 156 DGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIAL---IGERGREVREFIEG 212
Query: 307 LKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
M +V+V +T+ S+ + + Y G I EYFRD G+ +++ D +T+ A A R
Sbjct: 213 DLGEEGMKRSVIVVSTSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALR 272
Query: 367 QISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
++ L PP R + VF +LLERS +K GT+TAF +
Sbjct: 273 EVGLAAGEPPARAGYTPSVFSTLPKLLERSGASDK-------------GTITAFYTVLVA 319
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
D+ + V SI DG I L L + + PAI+V S+SR+ A + +++ G
Sbjct: 320 GDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKA 379
Query: 487 RIMLAQYRELESFSK---FSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVE 536
R +LA+Y+ E + + D + + +K++ +KQ HE + E
Sbjct: 380 REVLAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEE 432
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 176 bits (448), Expect = 8e-48
Identities = 103/319 (32%), Positives = 168/319 (52%), Gaps = 10/319 (3%)
Query: 596 FGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPK 655
FG G+ R T V+ G+P+ PVG LGR+++ LG+PID G ++ + P+ PP
Sbjct: 77 FGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPD 136
Query: 656 FSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSV 715
++ L TG++++D L +G ++G+F AGVGK+ M R + +V
Sbjct: 137 PMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNV 193
Query: 716 FIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGK 775
+GER RE +F + + + + ++ + S R + A +IAE FR+ G
Sbjct: 194 IALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGL 253
Query: 776 DVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQA 835
VLL +D++ RF A E+ G P+ G+ P++ E+ +L ER + G+IT A
Sbjct: 254 RVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGETGSIT---A 310
Query: 836 IY-VPADDLT--DPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEE 892
+Y V A+D + DP LD ++LSR+IA YPAID L S S+ + P +V E
Sbjct: 311 LYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVM-PQVVPRE 369
Query: 893 HYKVANEVKFYLQKYKELK 911
H + A ++ L K++E++
Sbjct: 370 HVQAAGRLRQLLAKHREVE 388
Score = 142 bits (359), Expect = 4e-36
Identities = 102/312 (32%), Positives = 147/312 (47%), Gaps = 27/312 (8%)
Query: 192 IPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSM 251
+PVG LLGR+++ GE ID V P M R V PL TG++ +D +
Sbjct: 98 VPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGL 157
Query: 252 IPIGKGQRELIIGDRQTGKTTI----AIDTIINQKNKNVICIYVCIGQKISSLINVINKL 307
+ +G+GQR I GK+T+ A T Q + NVI IG++ + I +
Sbjct: 158 MTLGEGQRMGIFAPAGVGKSTLMGMFARGT---QCDVNVI---ALIGERGREVREFIELI 211
Query: 308 KYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQ 367
+ M +VVV AT+ S+ E+ + Y I EYFRD G L++ D LT+ A A R+
Sbjct: 212 LGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQRE 271
Query: 368 ISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLE 427
I L PP R FP VF RLLER+ G++TA + L
Sbjct: 272 IGLAAGEPPARRGFPPSVFAELPRLLERAGM-------------GETGSITALYTV--LA 316
Query: 428 GDVTSFIPT--NVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGD 485
D + P V I DG + L + N PAI+V S+SRV + + +G
Sbjct: 317 EDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGR 376
Query: 486 IRIMLAQYRELE 497
+R +LA++RE+E
Sbjct: 377 LRQLLAKHREVE 388
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 171 bits (435), Expect = 4e-46
Identities = 108/346 (31%), Positives = 171/346 (49%), Gaps = 14/346 (4%)
Query: 569 RIINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRIL 628
+I + N + I + F G K V + + + PVG LGR++
Sbjct: 44 KIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRVV 103
Query: 629 NVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLF 688
+ LG PID KG I+ ++ +PI P + + + G+K ID L KG K+G+F
Sbjct: 104 DPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIF 163
Query: 689 GGAGVGKTVNMMELIRNIAIEHKGCSVFIGV----GERSREGNDFYHEMKESNVLDKVSL 744
G+GVGK+ +M +I KGC I V GER RE +F + + L+ +
Sbjct: 164 AGSGVGKS-TLMGMIV------KGCLAPIKVVALIGERGREIPEFIEKNLGGD-LENTVI 215
Query: 745 IYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSA 804
+ ++ R A +S+AE F+N G DVL +D++ RF +A E+ LG P++
Sbjct: 216 VVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTS 275
Query: 805 VGYQPTLAEEMGKLQERISSTKN-GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSR 863
GY P++ + +L ER + G+IT+ + V DD++DP + + LD IVLSR
Sbjct: 276 KGYPPSVLSLLPQLMERAGKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSR 335
Query: 864 QIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKE 909
++ + GIYP I+ L S S+ ++ I+ EH A + K KE
Sbjct: 336 ELTDFGIYPPINILNSASRVMND-IISPEHKLAARKFKRLYSLLKE 380
Score = 132 bits (335), Expect = 5e-33
Identities = 93/294 (31%), Positives = 139/294 (47%), Gaps = 17/294 (5%)
Query: 180 GQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNE 239
G K F +++ IPVG LLGR+V+ G ID K + + K M R ++E
Sbjct: 80 GDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDE 139
Query: 240 PLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISS 299
G+KSID ++ GKGQ+ I GK+T+ +I + I + IG++
Sbjct: 140 VFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLM--GMIVKGCLAPIKVVALIGERGRE 197
Query: 300 LINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLT 359
+ I K ++ TV+V AT+ DS + + ++ EYF++ G D L I D +T
Sbjct: 198 IPEFIEK-NLGGDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVT 256
Query: 360 KHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419
+ A A R+I L L PP + +P V L +L+ER+ K + G++TA
Sbjct: 257 RFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGK------------EEGKGSITA 304
Query: 420 FPIIETLEGDVTSF-IPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGG 472
F + +EGD S I SI DG I L L + P IN+ S SRV
Sbjct: 305 FFTV-LVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMN 357
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated.
Length = 440
Score = 168 bits (426), Expect = 6e-45
Identities = 95/320 (29%), Positives = 156/320 (48%), Gaps = 13/320 (4%)
Query: 596 FGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPK 655
F +++G++ V G VG GRIL+ LG PID + + + P
Sbjct: 78 FASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPPLTGQWRELDCPPPSP 137
Query: 656 FSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCS- 714
+ Q +L TGI+ ID + +G +IG+F AGVGK+ L+ + +
Sbjct: 138 LTRQPIEQ-MLTTGIRAIDGILSCGEGQRIGIFAAAGVGKST----LLGMLC---ADSAA 189
Query: 715 ---VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR 771
V +GER RE +F ++ + ++ + P+ RL+ T +IAE FR
Sbjct: 190 DVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFR 249
Query: 772 NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTIT 831
+ GK VLL D++ R+ A E+ G P+A + P++ + +L ER ++ G+IT
Sbjct: 250 DRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNSDRGSIT 309
Query: 832 SVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGE 891
+ + V DD+ +P + LD IVLSR++A G YPAID S S+ + P IV
Sbjct: 310 AFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIM-PQIVSA 368
Query: 892 EHYKVANEVKFYLQKYKELK 911
+A +++ L Y+E++
Sbjct: 369 GQLAMAQKLRRMLACYQEIE 388
Score = 145 bits (367), Expect = 3e-37
Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 18/308 (5%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDS 250
++ VG +L GRI++ G ID + RE ++ P + R+ + + L TGI++ID
Sbjct: 98 QVQVGADLAGRILDGLGAPIDGGPPLTGQWRE-LDCPPPSPLTRQPIEQMLTTGIRAIDG 156
Query: 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYY 310
++ G+GQR I GK+T+ + + +V+ + IG++ + + ++
Sbjct: 157 ILSCGEGQRIGIFAAAGVGKSTL-LGMLCADSAADVM-VLALIGERGREVREFLEQVLTP 214
Query: 311 NCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISL 370
TVVV AT+ A E+ T TI EYFRD G+ L++ D LT++A A R+I L
Sbjct: 215 EARARTVVVVATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGL 274
Query: 371 LLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGD- 429
PP +FP VF RLLER+ N + G++TAF + +EGD
Sbjct: 275 AAGEPPAAGSFPPSVFANLPRLLERTG-------------NSDRGSITAFYTV-LVEGDD 320
Query: 430 VTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIM 489
+ + V S+ DG I L L + + PAI++ SVSR+ ++ +R M
Sbjct: 321 MNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRM 380
Query: 490 LAQYRELE 497
LA Y+E+E
Sbjct: 381 LACYQEIE 388
>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 166 bits (422), Expect = 8e-45
Identities = 63/116 (54%), Positives = 76/116 (65%)
Query: 53 TGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGL 112
GPRYCPSIEDK +F + HQ+FLEPEG + E YL G STSL + QK++++ I GL
Sbjct: 264 IGPRYCPSIEDKPVRFADKPYHQVFLEPEGLDTDEYYLVGFSTSLPEDVQKRVLRTIPGL 323
Query: 113 NYSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA 168
+ I+R Y IEYDY DP L TL K +GQINGT GYEEAAAQG +A
Sbjct: 324 ENAEIVRPGYAIEYDYIDPPQLLPTLETKKIPGLFFAGQINGTEGYEEAAAQGLLA 379
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated.
Length = 438
Score = 166 bits (423), Expect = 1e-44
Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 8/308 (2%)
Query: 607 IVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHT--LPPKFSNQIFNNN 664
+V TGKP+ VG +G++L+ LG+P+D G K +P+ T PP +
Sbjct: 83 LVEATGKPLEVKVGSGLIGQVLDALGEPLD--GSALPKGLAPVSTDQDPPNPLKRPPIRE 140
Query: 665 ILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSR 724
+E G++ ID L KG ++G+F G+GVGK+ M + RN + + +V +GER R
Sbjct: 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGR 197
Query: 725 EGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNI 784
E +F L + ++ ++P+ R++ A T +IAE FR+ G +V+L +D++
Sbjct: 198 EVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSV 257
Query: 785 YRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLT 844
R +A E+ +G P+ GY P++ + KL ER + +G+IT+ + V DD+
Sbjct: 258 TRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN 317
Query: 845 DPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYL 904
+P T LD VL RQ+A G YPAI+ L+S S+ + +IV EH + AN + L
Sbjct: 318 EPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVM-NHIVSPEHKEAANRFRELL 376
Query: 905 QKYKELKD 912
Y+ +D
Sbjct: 377 STYQNSED 384
Score = 139 bits (351), Expect = 4e-35
Identities = 110/368 (29%), Positives = 169/368 (45%), Gaps = 34/368 (9%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETV--EKIAPGIMDRESVNEPLLT 243
T K E+ VG L+G+++++ GE +D L K V ++ P + R + EP+
Sbjct: 87 TGKPLEVKVGSGLIGQVLDALGEPLDGSA--LPKGLAPVSTDQDPPNPLKRPPIREPMEV 144
Query: 244 GIKSIDSMIPIGKGQRELIIGDRQTGKTT----IAIDTIINQKNKNVICIYVCIGQKISS 299
G+++IDS++ +GKGQR I GK+T IA +T + NVI + IG++
Sbjct: 145 GVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNT---SADLNVIAL---IGERGRE 198
Query: 300 LINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLT 359
+ I + + ++VV AT+ A + YT I EYFRD G + +++ D +T
Sbjct: 199 VREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVT 258
Query: 360 KHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419
+ A A R+I L + PP + + VF + +LLER+ +G++TA
Sbjct: 259 RVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTG-------------TNASGSITA 305
Query: 420 FPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIV 479
F + D+ I V I DG LD L N PAINV SVSRV
Sbjct: 306 FYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSPEH 365
Query: 480 KKLSGDIRIMLAQYRELESF-----SKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSI 534
K+ + R +L+ Y+ E K S +I Q Y +I +KQ E +
Sbjct: 366 KEAANRFRELLSTYQNSEDLINIGAYKRGSSREIDEAIQFY--PQIISFLKQGTDEKATF 423
Query: 535 VELIIILL 542
E I LL
Sbjct: 424 EESIQALL 431
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears to
be present in all complete eubacterial genomes so far,
as well as Saccharomyces cerevisiae. A subset of these
organisms have a closely related protein. GidA is absent
in the Archaea. It appears to act with MnmE, in an
alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34 in
certain tRNAs. The shorter, related protein, previously
called gid or gidA(S), is now called TrmFO (see model
TIGR00137) [Protein synthesis, tRNA and rRNA base
modification].
Length = 617
Score = 168 bits (427), Expect = 9e-44
Identities = 73/150 (48%), Positives = 88/150 (58%), Gaps = 24/150 (16%)
Query: 53 TGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGL 112
GPRYCPSIEDK+ +F + + HQIFLEPEG S E+Y NGLSTSL + Q ++++ I GL
Sbjct: 267 NGPRYCPSIEDKVVRFADKERHQIFLEPEGLNSDEIYPNGLSTSLPEDVQLQIVRSIPGL 326
Query: 113 NYSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA---- 168
+ I+R Y IEYD+FDPR L TL K +GQINGTTGYEEAAAQG +A
Sbjct: 327 ENAEILRPGYAIEYDFFDPRQLKPTLETKLIQGLFFAGQINGTTGYEEAAAQGLMAGINA 386
Query: 169 --------------------VLIDDLKNLT 178
VLIDDL
Sbjct: 387 ALKLQNKEPFILKRSEAYIGVLIDDLVTKG 416
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated.
Length = 450
Score = 164 bits (417), Expect = 1e-43
Identities = 97/262 (37%), Positives = 137/262 (52%), Gaps = 9/262 (3%)
Query: 625 GRILNVLGDPIDNKGEINSKKKS-PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGG 683
GR++N LG+PID G + + I P + L TG++VID+ P G
Sbjct: 107 GRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQ 166
Query: 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIG-VGERSREGNDFYHEMKESNVLDKV 742
+IG+F G+GVGK+ + L R A + +V I VGER RE +F + N L K
Sbjct: 167 RIGIFAGSGVGKSTLLAMLARADAFD----TVVIALVGERGREVREFLEDTLADN-LKKA 221
Query: 743 SLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTP 802
+ +E R LT +IAE FR+ G++VLL +D++ RF A EV+ G P
Sbjct: 222 VAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPP 281
Query: 803 SAVGYQPTLAEEMGKLQERI--SSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIV 860
A GY P++ E+ +L ER + G+IT + ++ V DD DP + LD IV
Sbjct: 282 VARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIV 341
Query: 861 LSRQIAELGIYPAIDPLESYSK 882
L R IAE G YPA+DPL S S+
Sbjct: 342 LDRAIAEQGRYPAVDPLASISR 363
Score = 110 bits (277), Expect = 2e-25
Identities = 89/311 (28%), Positives = 141/311 (45%), Gaps = 43/311 (13%)
Query: 200 GRIVNSKGEFIDNKKKFLIKNRE-TVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQ 258
GR++N+ GE ID R +++ AP M R V L TG++ ID P+ GQ
Sbjct: 107 GRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQ 166
Query: 259 RELIIGDRQTGKTTI--------AIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYY 310
R I GK+T+ A DT+ VI + +G++ + +
Sbjct: 167 RIGIFAGSGVGKSTLLAMLARADAFDTV-------VIAL---VGERGREVREFLEDTLAD 216
Query: 311 NCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISL 370
N + V V AT+ +S + ++P T I EYFRD G++ L+I D +T+ A A R+++L
Sbjct: 217 N-LKKAVAVVATSDESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVAL 275
Query: 371 LLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL-EGD 429
PP +P VF RLLER+ + G++T I L +GD
Sbjct: 276 AAGEPPVARGYPPSVFSELPRLLERAGP-----------GAEGGGSITG--IFSVLVDGD 322
Query: 430 V-TSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA----QYKIVKKLSG 484
+ ++ DG I LD + PA++ S+SR+ A Q K+V +L
Sbjct: 323 DHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQRKLVSRL-- 380
Query: 485 DIRIMLAQYRE 495
+ M+A++ E
Sbjct: 381 --KSMIARFEE 389
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated.
Length = 442
Score = 162 bits (412), Expect = 5e-43
Identities = 100/300 (33%), Positives = 149/300 (49%), Gaps = 24/300 (8%)
Query: 595 AFGNTNGIKRNT-IVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI-NSKKKSPIHTL 652
FG G++R V+ + P LGR++N LG+PID KG + P+
Sbjct: 70 PFGPLEGVRRGCRAVIANAAAAVRP-SRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAP 128
Query: 653 PPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKG 712
PP ++ L+ G++ ++ +G ++G+F G+GVGK+V + L RN
Sbjct: 129 PPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD----- 183
Query: 713 CSV-FIG-VGERSREGNDFYHE------MKESNVLDKVSLIYGQMNEPSGNRLRVALTGL 764
V IG +GER RE +F + + S V+ S +EP+ R + A L
Sbjct: 184 ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATS------DEPALMRRQAAYLTL 237
Query: 765 SIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERI-- 822
+IAE FR+ GKDVL +D++ RF +A E+ G P+ GY PT+ E+ +L ER
Sbjct: 238 AIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGP 297
Query: 823 SSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSK 882
GTIT + + V DD +P LD IV+ R IAE G YPAI+ L+S S+
Sbjct: 298 GPIGEGTITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSR 357
Score = 76.6 bits (189), Expect = 2e-14
Identities = 85/314 (27%), Positives = 141/314 (44%), Gaps = 42/314 (13%)
Query: 199 LGRIVNSKGEFIDNK-------KKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSM 251
LGR+VN+ GE ID K + ++ P R V EPL G++++++
Sbjct: 99 LGRVVNALGEPIDGKGPLPQGPVPYPLRAP------PPPAHSRARVGEPLDLGVRALNTF 152
Query: 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYN 311
+ +GQR I GK+ + + + + +V I + IG++ + +
Sbjct: 153 LTCCRGQRMGIFAGSGVGKSVL-LSMLARNADADVSVIGL-IGERGREVQEFLQDDLGPE 210
Query: 312 CMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLL 371
+ +VVV AT+ + A + + Y I EYFRD G+D L + D +T+ A A R+I L
Sbjct: 211 GLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLS 270
Query: 372 LRRPPGREAFPGDVFYLHSRLLERS--SKINKYFLEKKKIFNKNNGTLTA-FPIIETLEG 428
PP + + VF RLLER+ I + GT+T F ++ ++G
Sbjct: 271 AGEPPTTKGYTPTVFAELPRLLERAGPGPIGE-------------GTITGLFTVL--VDG 315
Query: 429 -DVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----VGGAAQYKIVKKLS 483
D + V I DG I ++ + PAINV SVSR + +V++
Sbjct: 316 DDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRR-- 373
Query: 484 GDIRIMLAQYRELE 497
R ++A Y ++E
Sbjct: 374 --ARQLMATYADME 385
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated.
Length = 444
Score = 160 bits (407), Expect = 3e-42
Identities = 101/315 (32%), Positives = 160/315 (50%), Gaps = 42/315 (13%)
Query: 618 PVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLP--PKFSNQIFNNNILETGIKVIDL 675
PVG LGR+++ +G+P+D G I + +++ H+ P P I L+ G++ I+
Sbjct: 98 PVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPI--TEPLDVGVRAINA 155
Query: 676 LCPFLKGGKIGLFGGAGVGKTV--NMMELIRNIAIEHKGCS---VFIG-VGERSREGNDF 729
+ KG ++GLF G+GVGK+V MM +G + + +G VGER RE +F
Sbjct: 156 MLTVGKGQRMGLFAGSGVGKSVLLGMMT---------RGTTADVIVVGLVGERGREVKEF 206
Query: 730 YHEM------KESNVL----DKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLL 779
E+ S V+ D L+ RL+ T +IAE FR+ G +VLL
Sbjct: 207 IEEILGEEGRARSVVVAAPADTSPLM----------RLKGCETATTIAEYFRDQGLNVLL 256
Query: 780 FIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERI--SSTKNGTITSVQAIY 837
+D++ R+ A E++ +G P+ GY P++ ++ L ER G+IT+ +
Sbjct: 257 LMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYTVL 316
Query: 838 VPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVA 897
DDL DP + LD IVLSR++A+ G YPAID S S+ + P ++ EEH +
Sbjct: 317 TEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVM-PMVISEEHLEAM 375
Query: 898 NEVKFYLQKYKELKD 912
VK Y++ +D
Sbjct: 376 RRVKQVYSLYQQNRD 390
Score = 121 bits (306), Expect = 3e-29
Identities = 82/279 (29%), Positives = 135/279 (48%), Gaps = 13/279 (4%)
Query: 192 IPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSM 251
+PVG LLGR+++ G +D R + + R + EPL G+++I++M
Sbjct: 97 LPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAM 156
Query: 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYN 311
+ +GKGQR + GK+ + + + +VI + + +G++ + I ++
Sbjct: 157 LTVGKGQRMGLFAGSGVGKS-VLLGMMTRGTTADVIVVGL-VGERGREVKEFIEEILGEE 214
Query: 312 CMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLL 371
+VVVAA A S + T TI EYFRD G + L++ D LT++A A R+I+L
Sbjct: 215 GRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALA 274
Query: 372 LRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVT 431
+ PP + +P VF L+ER+ G++TAF + T D+
Sbjct: 275 VGEPPATKGYPPSVFAKLPALVERAGN-----------GGPGQGSITAFYTVLTEGDDLQ 323
Query: 432 SFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
I +I DG I L L +S + PAI++ S+SRV
Sbjct: 324 DPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRV 362
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 159 bits (404), Expect = 6e-42
Identities = 102/313 (32%), Positives = 161/313 (51%), Gaps = 21/313 (6%)
Query: 608 VVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNI-- 665
+ DTG+ P+G LGR+L+ G +D KG + ++ P + N + + I
Sbjct: 97 LADTGR---LPMGMSMLGRVLDGAGRALDGKGPMKAEDWVP---MDGPTINPLNRHPISE 150
Query: 666 -LETGIKVIDLLCPFLKGGKIGLFGGAGVGKTV--NMMELIRNIAIEHKGCSVFIG-VGE 721
L+ GI+ I+ L +G ++GLF G GVGK+V MM I + +G +GE
Sbjct: 151 PLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADI------IVVGLIGE 204
Query: 722 RSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFI 781
R RE +F + L + ++ ++ RLR A+ IAE FR+ GK+VLL +
Sbjct: 205 RGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLM 264
Query: 782 DNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTK--NGTITSVQAIYVP 839
D++ RF A E++ +G P+ GY P++ ++ KL ER + + G+IT+ +
Sbjct: 265 DSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYTVLSE 324
Query: 840 ADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANE 899
DD DP + LD IVLSR++AE G YPAID S S+ + P +V EH + A
Sbjct: 325 GDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVM-PQVVDPEHLRRAQR 383
Query: 900 VKFYLQKYKELKD 912
K +Y++ +D
Sbjct: 384 FKQLWSRYQQSRD 396
Score = 115 bits (290), Expect = 3e-27
Identities = 82/287 (28%), Positives = 140/287 (48%), Gaps = 29/287 (10%)
Query: 192 IPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGI--MDRESVNEPLLTGIKSID 249
+P+G +LGR+++ G +D K +K + V P I ++R ++EPL GI+SI+
Sbjct: 103 LPMGMSMLGRVLDGAGRALDGKGP--MKAEDWVPMDGPTINPLNRHPISEPLDVGIRSIN 160
Query: 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKY 309
++ +G+GQR + GK+ + ++ + + I + IG++ + I +
Sbjct: 161 GLLTVGRGQRLGLFAGTGVGKSVLL--GMMTRFTEADIIVVGLIGERGREVKEFIEHILG 218
Query: 310 YNCMDYTVVVAATAADSA-----AEQYISPYTGCT-IGEYFRDLGQDCLIIYDDLTKHAW 363
+ +VVVA+ A D+ A Y CT I EYFRD G++ L++ D LT+ A
Sbjct: 219 EEGLKRSVVVASPADDAPLMRLRAAMY------CTRIAEYFRDKGKNVLLLMDSLTRFAQ 272
Query: 364 AYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPII 423
A R+I+L + PP + +P VF +L+ER+ G++TAF +
Sbjct: 273 AQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNA-----------EPGGGSITAFYTV 321
Query: 424 ETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
+ D I + + DG I L L + PAI++ S+SRV
Sbjct: 322 LSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRV 368
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 157 bits (399), Expect = 2e-41
Identities = 92/298 (30%), Positives = 156/298 (52%), Gaps = 11/298 (3%)
Query: 619 VGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFS--NQIFNNNILETGIKVIDLL 676
+GD LGR++N LG+P+D KG++ +P+ P+ + + L+ G+ I+ L
Sbjct: 92 IGDSWLGRVINGLGEPLDGKGQLGGS--TPLQQQLPQIHPLQRRAVDTPLDVGVNAINGL 149
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIG-VGERSREGNDFYHEMKE 735
KG ++GL G+GVGK+V + + R + V +G +GER RE +F +
Sbjct: 150 LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQAD----VVVVGLIGERGREVKEFIEHSLQ 205
Query: 736 SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVS 795
+ + K ++ +E R++ +IA +R+ G DVLL +D++ R+ +A E++
Sbjct: 206 AAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIA 265
Query: 796 AMLGRTPSAVGYQPTLAEEMGKLQERI-SSTKNGTITSVQAIYVPADDLTDPSPSTTFTH 854
LG P+ GY P+ + +L E +S+ NGT+T++ + DD DP
Sbjct: 266 LSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAV 325
Query: 855 LDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
LD IVLSR++AE G YPAID +S S+ + ++G + K A+ +K Y +K
Sbjct: 326 LDGHIVLSRKLAEAGHYPAIDISQSISRCMSQ-VIGSQQAKAASLLKQCYADYMAIKP 382
Score = 107 bits (268), Expect = 2e-24
Identities = 90/326 (27%), Positives = 151/326 (46%), Gaps = 26/326 (7%)
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKN--RETVEKIAPGIMDR 234
+ G + F +E+ E+ +G LGR++N GE +D K + ++ + +I P + R
Sbjct: 75 VLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHP--LQR 132
Query: 235 ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIG 294
+V+ PL G+ +I+ ++ IGKGQR ++ GK+ + + I +V+ + + IG
Sbjct: 133 RAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVL-LGMITRYTQADVVVVGL-IG 190
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + I M +VVVAA A +S + + I Y+RD G D L++
Sbjct: 191 ERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLL 250
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D LT++A A R+I+L L PP + +P F + RL E + + N
Sbjct: 251 VDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGN------------SSGN 298
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR----V 470
GT+TA + D I ++ DG I L L + + PAI++ S+SR V
Sbjct: 299 GTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQV 358
Query: 471 GGAAQYKIVKKLSGDIRIMLAQYREL 496
G+ Q K L A Y +
Sbjct: 359 IGSQQAKAASLLKQ----CYADYMAI 380
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 156 bits (395), Expect = 5e-41
Identities = 103/317 (32%), Positives = 159/317 (50%), Gaps = 7/317 (2%)
Query: 594 IAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLP 653
+ F T + V + ++ P G+ LG++L+ G+ ++ + E +K + P
Sbjct: 68 LPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPP 127
Query: 654 PKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC 713
+ ++ ETGIK ID + G KIG+F G+GVGK+ + + +N +
Sbjct: 128 IHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---I 184
Query: 714 SVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS 773
+V VGER RE DF + + K ++ +E +LR A SIAE FR+
Sbjct: 185 NVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQ 244
Query: 774 GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE-MGKLQERISSTKNGTITS 832
G +VLL +D++ RF A V + P +G + L E M KL ER T+ G+IT
Sbjct: 245 GNNVLLMMDSVTRFADARRSVDIAVKELP--IGGKTLLMESYMKKLLERSGKTQKGSITG 302
Query: 833 VQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEE 892
+ + V DDL P P LD IVL R++A L YPAI L+S S+ ++ IV
Sbjct: 303 IYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEE-IVSPN 361
Query: 893 HYKVANEVKFYLQKYKE 909
H+++ANE++ L YKE
Sbjct: 362 HWQLANEMRKILSIYKE 378
Score = 109 bits (274), Expect = 3e-25
Identities = 92/318 (28%), Positives = 154/318 (48%), Gaps = 26/318 (8%)
Query: 192 IPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGI--MDRESVNEPLLTGIKSID 249
IP G LLG+++++ GE ++ + + + + ++ AP I +RE + + TGIKSID
Sbjct: 91 IPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLD--APPIHAFEREEITDVFETGIKSID 148
Query: 250 SMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKY 309
SM+ IG GQ+ I GK+T+ +I + K I + +G++ + + I K
Sbjct: 149 SMLTIGIGQKIGIFAGSGVGKSTLL--GMIAKNAKADINVISLVGERGREVKDFIRKELG 206
Query: 310 YNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQIS 369
M +VVV AT+ +S Q + +I EYFRD G + L++ D +T+ A A R +
Sbjct: 207 EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVD 266
Query: 370 LLLRRPPGREAFPGDVFYLHS---RLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETL 426
+ ++ P G + S +LLERS K K G++T +
Sbjct: 267 IAVKELP----IGGKTLLMESYMKKLLERSGKTQK-------------GSITGIYTVLVD 309
Query: 427 EGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDI 486
D+ +P I DG I L L ++ PAI+V SVSR+ +L+ ++
Sbjct: 310 GDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEM 369
Query: 487 RIMLAQYRELESFSKFSS 504
R +L+ Y+E E + K +
Sbjct: 370 RKILSIYKENELYFKLGT 387
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 151 bits (382), Expect = 3e-39
Identities = 91/318 (28%), Positives = 157/318 (49%), Gaps = 9/318 (2%)
Query: 596 FGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPK 655
F +T G+ V+ + PVG+ LGR+++ G P+D + + K PP
Sbjct: 70 FTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAMPPPA 129
Query: 656 FSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC-- 713
Q ++ TGI+ ID + +G ++G+F GVGK+ ++ ++ N
Sbjct: 130 MVRQPITQPLM-TGIRAIDSVATCGEGQRVGIFSAPGVGKS-TLLAMLCNAP----DADS 183
Query: 714 SVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS 773
+V + +GER RE +F + ++ + P+ R+R +IAE FR++
Sbjct: 184 NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN 243
Query: 774 GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSV 833
GK V+L D++ R+ A E++ G T + Y P + + +L ER + G+IT+
Sbjct: 244 GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEKGSITAF 303
Query: 834 QAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEH 893
+ V DD+ +P + LD IVLSR++AE G YPAID L + S+ P + EH
Sbjct: 304 YTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVF-PVVTSHEH 362
Query: 894 YKVANEVKFYLQKYKELK 911
++A ++ L Y+E++
Sbjct: 363 RQLAAILRRCLALYQEVE 380
Score = 125 bits (316), Expect = 1e-30
Identities = 92/321 (28%), Positives = 158/321 (49%), Gaps = 16/321 (4%)
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
L GQ+ + ++PVG LLGR+++ G +D ++ + ++ + + P M R+
Sbjct: 76 LHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKD-YDAMPPPAMVRQP 134
Query: 237 VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQK 296
+ +PL+TGI++IDS+ G+GQR I GK+T+ + + N + + + V IG++
Sbjct: 135 ITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTL-LAMLCNAPDADS-NVLVLIGER 192
Query: 297 ISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYD 356
+ I+ V+V AT+ A E+ + + TI E+FRD G+ +++ D
Sbjct: 193 GREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLAD 252
Query: 357 DLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGT 416
LT++A A R+I+L +P VF RLLER+ K G+
Sbjct: 253 SLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-------------GS 299
Query: 417 LTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQY 476
+TAF + D+ + V S+ DG I L L + PAI+V ++SRV
Sbjct: 300 ITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTS 359
Query: 477 KIVKKLSGDIRIMLAQYRELE 497
++L+ +R LA Y+E+E
Sbjct: 360 HEHRQLAAILRRCLALYQEVE 380
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 137 bits (346), Expect = 2e-34
Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 22/305 (7%)
Query: 618 PVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFN-------NNILETGI 670
P+G LGR+L+ G P+D ++ + + T P FN ++L+TG+
Sbjct: 111 PLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPP-------FNPLQRTPIEHVLDTGV 163
Query: 671 KVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIG-VGERSREGNDF 729
+ I+ L +G ++GLF G+GVGK+V L+ +A + + +G +GER RE DF
Sbjct: 164 RAINALLTVGRGQRMGLFAGSGVGKSV----LLGMMARYTQADVIVVGLIGERGREVKDF 219
Query: 730 YHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789
+ + + +I + R++ A IAE+FR+ G+ VLL +D++ R+ +
Sbjct: 220 IENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAM 279
Query: 790 AGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISS--TKNGTITSVQAIYVPADDLTDPS 847
A E++ +G P+ GY P++ ++ L ER + + G+IT+ + DD DP
Sbjct: 280 AQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQDPI 339
Query: 848 PSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKY 907
+ LD IVLSR++AE G YPAID S S+ + ++ E+HY + K L +
Sbjct: 340 ADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTA-LIDEQHYARVRQFKQLLSSF 398
Query: 908 KELKD 912
+ +D
Sbjct: 399 QRNRD 403
Score = 91.4 bits (227), Expect = 3e-19
Identities = 79/286 (27%), Positives = 137/286 (47%), Gaps = 25/286 (8%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEK---IAPGI--MDRESVNEPLLTGI 245
++P+G LLGR+++ G+ +D + +T E I P + R + L TG+
Sbjct: 109 QLPLGPALLGRVLDGSGKPLDG-----LPAPDTGETGALITPPFNPLQRTPIEHVLDTGV 163
Query: 246 KSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVIN 305
++I++++ +G+GQR + GK+ + + + +VI + + IG++ + + I
Sbjct: 164 RAINALLTVGRGQRMGLFAGSGVGKSVL-LGMMARYTQADVIVVGL-IGERGREVKDFIE 221
Query: 306 KLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAY 365
+ +VV+AA A S + I E FRD GQ L+I D LT++A A
Sbjct: 222 NILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ 281
Query: 366 RQISLLLRRPPGREAFPGDVFYLHSRLLERSSK-INKYFLEKKKIFNKNNGTLTAFPIIE 424
R+I+L + PP + +P VF L+ER+ I+ G++TAF +
Sbjct: 282 REIALAIGEPPATKGYPPSVFAKLPALVERAGNGIS------------GGGSITAFYTVL 329
Query: 425 TLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
T D I + +I DG I L L + + PAI++ S+SR
Sbjct: 330 TEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRA 375
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
subunit B. These ATPases couple ATP hydrolysis to the
build up of a H+ gradient, but V-type ATPases do not
catalyze the reverse reaction. The Vacuolar (V-type)
ATPase is found in the membranes of vacuoles, the golgi
apparatus and in other coated vesicles in eukaryotes.
Archaea have a protein which is similar in sequence to
V-ATPases, but functions like an F-ATPase (called
A-ATPase). A similar protein is also found in a few
bacteria. This subfamily consists of the non-catalytic
beta subunit.
Length = 276
Score = 118 bits (298), Expect = 2e-29
Identities = 80/272 (29%), Positives = 130/272 (47%), Gaps = 6/272 (2%)
Query: 617 TPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
PV + LGRI N G PID EI +++ I+ P +I+ +++TGI ID +
Sbjct: 4 VPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGM 63
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAI---EHKGCSVFIGVGERSREGNDFYHEM 733
++G KI +F G+G+ ++ R + E VF +G + F +
Sbjct: 64 NTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDF 123
Query: 734 KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGT 792
+E+ L++V L N+P+ R+ L+ AE GK VL+ + ++ + A
Sbjct: 124 EETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALR 183
Query: 793 EVSAMLGRTPSAVGYQPTLAEEMGKLQER--ISSTKNGTITSVQAIYVPADDLTDPSPST 850
E+SA P GY + ++ + ER +NG+IT + + +P DD+T P P
Sbjct: 184 EISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDL 243
Query: 851 TFTHLDSTIVLSRQIAELGIYPAIDPLESYSK 882
T + IVL RQ+ GIYP I+ L S S+
Sbjct: 244 TGYITEGQIVLDRQLHNRGIYPPINVLPSLSR 275
Score = 113 bits (284), Expect = 1e-27
Identities = 81/288 (28%), Positives = 128/288 (44%), Gaps = 20/288 (6%)
Query: 189 IFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSI 248
++PV ++LGRI N G+ ID + L + + + R E + TGI +I
Sbjct: 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAI 60
Query: 249 DSMIPIGKGQRELIIGDRQTG------KTTIAIDTIINQKNKNVICIYVCIGQKISSLIN 302
D M + +GQ+ I +G IA + + +N ++ +G +
Sbjct: 61 DGMNTLVRGQKIPIFSG--SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARF 118
Query: 303 VINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKH 361
+ + ++ V+ A D E+ I+P T EY + G+ L+I D+T +
Sbjct: 119 FKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178
Query: 362 AWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFP 421
A A R+IS PGR +PG Y+++ L + I Y E+ NG++T P
Sbjct: 179 AEALREISAAREEVPGRRGYPG---YMYTDL----ATI--Y--ERAGRVEGRNGSITQIP 227
Query: 422 IIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR 469
I+ D+T IP IT+GQI LD L N P INV S+SR
Sbjct: 228 ILTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSR 275
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
production and conversion].
Length = 463
Score = 122 bits (308), Expect = 2e-29
Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 11/314 (3%)
Query: 596 FGNTNGI-KRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPP 654
F T+G+ + T V TG+ + PV + LGRI N G PID EI + + I+ P
Sbjct: 59 FEGTSGLDTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPI 118
Query: 655 KFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAI---EHK 711
+I+ ++TGI ID + ++G K+ +F G+G+ ++ R + E +
Sbjct: 119 NPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQATVDGEEEE 178
Query: 712 GCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR 771
VF +G E F E +E+ LD+ L ++P+ R+ L++AE
Sbjct: 179 FAVVFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLA 238
Query: 772 -NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISST--KNG 828
VL+ + ++ + A E+SA P GY + ++ + ER + G
Sbjct: 239 FEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKG 298
Query: 829 TITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYI 888
+IT + + +P DD+T P P T + IVLSR + GIYP I+ L S S+ + I
Sbjct: 299 SITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGI 358
Query: 889 ----VGEEHYKVAN 898
E+H V+N
Sbjct: 359 GEGKTREDHGDVSN 372
Score = 102 bits (255), Expect = 1e-22
Identities = 93/378 (24%), Positives = 153/378 (40%), Gaps = 52/378 (13%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGI 245
T + +IPV +LLGRI N G+ ID + + ++R + R E + TGI
Sbjct: 75 TGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGI 134
Query: 246 KSIDSMIPIGKGQR------------ELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCI 293
+ID M + +GQ+ EL IA ++ + + ++ +
Sbjct: 135 SAIDGMNTLVRGQKLPIFSGSGLPHNELAA--------QIARQATVDGEEEEFAVVFAAM 186
Query: 294 GQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCL 352
G + +++ + +D V+ A D A E+ I+P T+ EY + L
Sbjct: 187 GITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEKDMHVL 246
Query: 353 IIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNK 412
+I D+T + A R+IS PGR +PG Y+++ L Y E+
Sbjct: 247 VILTDMTNYCEALREISAAREEVPGRRGYPG---YMYTDLATI------Y--ERAGRIRG 295
Query: 413 NNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGG 472
G++T PI+ D+T IP IT+GQI L +L P INV S+SR+
Sbjct: 296 RKGSITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMK 355
Query: 473 AAQYKIV-----KKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISL----- 522
+ +S + A+ R+L +V + L ++ L
Sbjct: 356 DGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVA------VVGEEALSERDRKYLKFADL 409
Query: 523 ----LMKQKPHENYSIVE 536
+KQ +EN SI E
Sbjct: 410 FEQRFIKQGRYENRSIEE 427
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 458
Score = 120 bits (302), Expect = 1e-28
Identities = 94/328 (28%), Positives = 155/328 (47%), Gaps = 19/328 (5%)
Query: 587 GENIVRTIAFGNTNGIKRN-TIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKK 645
E I F T G+ T V TG+ + PV + LGRILN G+PID EI +
Sbjct: 45 SEGIAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDE 104
Query: 646 KSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRN 705
+ I+ P + + ++TGI ID + ++G K+ +F G+G+ ++ R
Sbjct: 105 RRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQIARQ 164
Query: 706 IAI---EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL---RV 759
+ E + VF +G E N F + +E+ L++ + ++P+ R+ R+
Sbjct: 165 ATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRM 224
Query: 760 ALTGLSIAEEFRNSGKD--VLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817
ALT A E+ KD VL+ + ++ + A E+SA P GY + ++
Sbjct: 225 ALT----AAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLAT 280
Query: 818 LQER--ISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
+ ER K G+IT + + +P DD+T P P T + IVLSR++ GIYP I+
Sbjct: 281 IYERAGRVKGKKGSITQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIN 340
Query: 876 PLESYSKQLDPYI----VGEEHYKVANE 899
L S S+ + I E+H V+++
Sbjct: 341 VLPSLSRLMKDGIGEGKTREDHKDVSDQ 368
Score = 97.5 bits (243), Expect = 3e-21
Identities = 78/291 (26%), Positives = 124/291 (42%), Gaps = 18/291 (6%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGI 245
T + ++PV ++LGRI+N GE ID + + R + RE E + TGI
Sbjct: 70 TGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGI 129
Query: 246 KSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ-----KNKNVICIYVCIGQKISSL 300
+ID M + +GQ+ I +A I Q + ++ +G
Sbjct: 130 SAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVRGEESEFAVVFAAMGITYEEA 188
Query: 301 INVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLT 359
+ + ++ VV A D A E+ ++P T EY + L+I D+T
Sbjct: 189 NFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMHVLVILTDMT 248
Query: 360 KHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419
+ A R+IS PGR +PG ++ + + ER+ ++ KK G++T
Sbjct: 249 NYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKG-----KK------GSITQ 297
Query: 420 FPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
PI+ D+T IP IT+GQI L L P INV S+SR+
Sbjct: 298 MPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRL 348
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 116 bits (293), Expect = 1e-27
Identities = 92/309 (29%), Positives = 143/309 (46%), Gaps = 14/309 (4%)
Query: 608 VVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILE 667
V+ +P + D LGR+L+ G+P+D K ++ P+ + PP ++ I
Sbjct: 83 VLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFP 142
Query: 668 TGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC-SVFIGVGERSREG 726
TGIK ID KG +IG+F G GK+ L+ IA K +V +GER RE
Sbjct: 143 TGIKAIDAFLTLGKGQRIGVFSEPGSGKS----SLLSTIAKGSKSTINVIALIGERGREV 198
Query: 727 NDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYR 786
++ + KE + +I +E + ++ ++IAE FR+ G VL +D++ R
Sbjct: 199 REYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258
Query: 787 FTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAI-YVP--ADDL 843
+ A EV+ G T SA Y ++ + + ER + G+IT++ AI + P D
Sbjct: 259 WIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNNDKGSITALYAILHYPNHPDIF 318
Query: 844 TDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFY 903
TD S LD L+ Q L P ID L S S+ + HY A E++
Sbjct: 319 TDYLKSL----LDGHFFLTPQGKALA-SPPIDILTSLSRSARQLAL-PHHYAAAEELRSL 372
Query: 904 LQKYKELKD 912
L+ Y E D
Sbjct: 373 LKAYHEALD 381
Score = 108 bits (271), Expect = 7e-25
Identities = 72/278 (25%), Positives = 130/278 (46%), Gaps = 17/278 (6%)
Query: 192 IPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSM 251
+ + LLGR+++ G +D K++ + + + P M R+ + E TGIK+ID+
Sbjct: 92 LHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAF 151
Query: 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYN 311
+ +GKGQR + + +GK+++ + I + +K+ I + IG++ + I + K
Sbjct: 152 LTLGKGQRIGVFSEPGSGKSSLL--STIAKGSKSTINVIALIGERGREVREYIEQHKEGL 209
Query: 312 CMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLL 371
T+++A+ A ++A + I+ TI EYFRD G L I D L++ A ++++L
Sbjct: 210 AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALA 269
Query: 372 LRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVT 431
+ VF+ S ER+ N + G++TA I
Sbjct: 270 RGETLSAHHYAASVFHHVSEFTERAG-------------NNDKGSITALYAILHYPNHPD 316
Query: 432 SFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR 469
F + S+ DG FL T + P I++ S+SR
Sbjct: 317 IFTDY-LKSLLDGHFFL-TPQGKALASPPIDILTSLSR 352
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 114 bits (287), Expect = 1e-26
Identities = 100/325 (30%), Positives = 156/325 (48%), Gaps = 33/325 (10%)
Query: 596 FGNTNGIK-RNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPP 654
F T G+ ++T V TG+P+ PV + LGRI + LG PID EI +K+ I+ P
Sbjct: 56 FEGTTGLDLKDTKVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPI 115
Query: 655 KFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAI---EHK 711
+ + ++TGI ID L ++G K+ +F G+G+ ++ R + E
Sbjct: 116 NPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQAKVLGEEEN 175
Query: 712 GCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL---RVALTGLSIAE 768
VF +G E N F + +E+ L++ + ++P+ R+ R+ALT AE
Sbjct: 176 FAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALT---AAE 232
Query: 769 --EFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP--------TLAEEMGKL 818
F G VL+ + ++ + A E+SA P GY P T+ E G++
Sbjct: 233 YLAF-EKGMHVLVILTDMTNYCEALREISAAREEVPGRRGY-PGYMYTDLATIYERAGRI 290
Query: 819 QERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLE 878
+ K G+IT + + +P DD+T P P T + IVLSR++ GIYP ID L
Sbjct: 291 KG-----KKGSITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLP 345
Query: 879 SYSKQLDPYIVG-----EEHYKVAN 898
S S+ + I G E+H VAN
Sbjct: 346 SLSRLMKDGI-GEGKTREDHKDVAN 369
Score = 94.5 bits (236), Expect = 3e-20
Identities = 79/303 (26%), Positives = 132/303 (43%), Gaps = 44/303 (14%)
Query: 186 TEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGI 245
T + ++PV ++LGRI + G ID + + + R + + RE E + TGI
Sbjct: 72 TGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGI 131
Query: 246 KSIDSMIPIGKGQR------------EL---IIGDRQTGKTTIAIDTIINQKNKNVICIY 290
+ID + + +GQ+ EL I RQ ++ ++ + ++
Sbjct: 132 SAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIA--RQA--------KVLGEEENFAV-VF 180
Query: 291 VCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQ 349
+G + + ++ +VV A D A E+ ++P T EY + G
Sbjct: 181 AAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGM 240
Query: 350 DCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRL---LERSSKINKYFLEK 406
L+I D+T + A R+IS PGR +PG Y+++ L ER+ +I +
Sbjct: 241 HVLVILTDMTNYCEALREISAAREEVPGRRGYPG---YMYTDLATIYERAGRI-----KG 292
Query: 407 KKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLS 466
KK G++T PI+ + D+T IP IT+GQI L L P I+V S
Sbjct: 293 KK------GSITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPS 346
Query: 467 VSR 469
+SR
Sbjct: 347 LSR 349
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 466
Score = 110 bits (276), Expect = 2e-25
Identities = 91/350 (26%), Positives = 145/350 (41%), Gaps = 30/350 (8%)
Query: 135 NQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPV 194
+ +N+ + TV SGQ+ +G +A Q F D K T C T I PV
Sbjct: 24 AEIVNLTLPDGTVRSGQVLEVSG-NKAVVQVFEGTSGIDAKKTT----CEFTGDILRTPV 78
Query: 195 GFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPI 254
++LGR+ N G+ ID L ++ + R E + TGI +ID M I
Sbjct: 79 SEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSI 138
Query: 255 GKGQRELIIGD-------------RQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLI 301
+GQ+ I RQ G + + + N ++ +G + +
Sbjct: 139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETAR 198
Query: 302 NVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTK 360
+ M+ + A D E+ I+P T EY + L+I D++
Sbjct: 199 FFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258
Query: 361 HAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAF 420
+A A R++S PGR FPG ++ + + ER+ ++ NG++T
Sbjct: 259 YADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEG-----------RNGSITQI 307
Query: 421 PIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
PI+ D+T IP IT+GQI++D L N P INV S+SR+
Sbjct: 308 PILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL 357
Score = 97.9 bits (244), Expect = 2e-21
Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 30/330 (9%)
Query: 596 FGNTNGIK-RNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPP 654
F T+GI + T TG + TPV + LGR+ N G PID + ++ I+ P
Sbjct: 54 FEGTSGIDAKKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPI 113
Query: 655 KFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAI------ 708
+I+ +++TGI ID++ +G KI +F AG+ ++ R +
Sbjct: 114 NPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTK 173
Query: 709 ------EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRL---RV 759
E VF +G F + +E+ +++V L N+P+ R+ R+
Sbjct: 174 DVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRL 233
Query: 760 ALTGLSIAEEF--RNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGK 817
ALT E+ K VL+ + ++ + A EVSA P G+ + ++
Sbjct: 234 ALT----TAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLAT 289
Query: 818 LQERISST--KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAID 875
+ ER +NG+IT + + +P DD+T P P T + I + RQ+ IYP I+
Sbjct: 290 IYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPIN 349
Query: 876 PLESYSKQLDPYIVGE-----EHYKVANEV 900
L S S+ + I GE +H V+N++
Sbjct: 350 VLPSLSRLMKSAI-GEGMTRKDHSDVSNQL 378
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 96.0 bits (239), Expect = 6e-23
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 23/184 (12%)
Query: 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVS 743
I +FG G GKT ++L NIA G V++ + E E + LD +
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIA-TKGGKVVYVDIEEEIEELTERLIGESLKGALDNLI 59
Query: 744 LIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPS 803
+++ ++P+ RL S AE R G D L+ +D + R A E+
Sbjct: 60 IVFATADDPAAARLL------SKAERLRERGGDDLIILDELTRLVRALREI--------- 104
Query: 804 AVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPS----PSTTFTHLDSTI 859
GY L EE+ +L ER + G +T + + VP+ D DP D+ I
Sbjct: 105 REGYPGELDEELRELLERA---RKGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVI 161
Query: 860 VLSR 863
VLSR
Sbjct: 162 VLSR 165
Score = 74.8 bits (184), Expect = 1e-15
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 35/194 (18%)
Query: 259 RELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVV 318
L+ G +GKTT+A+ +N K +YV I ++I L + +D ++
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLII 60
Query: 319 VAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGR 378
V ATA D AA + +S E R+ G D LII D+LT+ A R+I R
Sbjct: 61 VFATADDPAAARLLS------KAERLRERGGDDLIILDELTRLVRALREI---------R 105
Query: 379 EAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVT----SFI 434
E +PG++ LLER+ G +T ++ GD +
Sbjct: 106 EGYPGELDEELRELLERA----------------RKGGVTVIFTLQVPSGDKGDPRLTRG 149
Query: 435 PTNVISITDGQIFL 448
N+ I D I L
Sbjct: 150 AQNLEDIADTVIVL 163
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 96.7 bits (241), Expect = 1e-20
Identities = 73/240 (30%), Positives = 106/240 (44%), Gaps = 29/240 (12%)
Query: 666 LETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSRE 725
L TG +++D P KGG + G G GKTV +L + + V+IG GER E
Sbjct: 206 LITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQHQLAKWSDAD---IVVYIGCGERGNE 262
Query: 726 GNDFYHEMKE-------SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVL 778
D E E ++++ LI N P R TG++IAE FR+ G DV
Sbjct: 263 MTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVA 322
Query: 779 LFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNGTIT 831
L D+ R+ A E+S L P GY LA + + ER + G++T
Sbjct: 323 LMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVT 382
Query: 832 SVQAIYVPADDLTDPSPSTT------FTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLD 885
+ A+ P D ++P T F LD+ + R +PAI+ L+SYS +D
Sbjct: 383 VIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLAQRRH------FPAINWLQSYSLYVD 436
Score = 91.7 bits (228), Expect = 4e-19
Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 37/258 (14%)
Query: 219 KNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTI 278
R EK+ P PL+TG + +D+ PI KG I G +GKT + +
Sbjct: 192 IPRPYKEKLPP--------EVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKT-VTQHQL 242
Query: 279 INQKNKNVICIYVCIGQKISSLINVINKLKYYN-------CMDYTVVVAATAADSAAEQY 331
+ +++ +Y+ G++ + + +V+ + M+ TV++A T+ A +
Sbjct: 243 AKWSDADIV-VYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAARE 301
Query: 332 ISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSR 391
S YTG TI EYFRD+G D ++ D ++ A A R+IS L PG E +P YL SR
Sbjct: 302 ASIYTGITIAEYFRDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPA---YLASR 358
Query: 392 LLERSSKINKYFLEKK---KIFNKNN--GTLTAFPIIETLEGDVTSFIPTNVISITDGQI 446
L E F E+ K G++T + GD + + N + I ++
Sbjct: 359 LAE--------FYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFSEPVTQNTLRIV--KV 408
Query: 447 F--LDTNLFNSNYRPAIN 462
F LD +L + PAIN
Sbjct: 409 FWALDADLAQRRHFPAIN 426
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 96.2 bits (240), Expect = 2e-20
Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 33/290 (11%)
Query: 219 KNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTI 278
K R K+ P PL+TG + ID++ P+ KG + G +GKT T+
Sbjct: 194 KARPVKRKLPP--------EIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVS-QHTL 244
Query: 279 INQKNKNVICIYVCIGQKISSLINVIN---KLKYYNC----MDYTVVVAATAADSAAEQY 331
+ +++ IYV G++ + + V+ +LK N MD TV++A T+ A +
Sbjct: 245 SKLADGDIV-IYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAARE 303
Query: 332 ISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSR 391
S YTG TI EY+RD+G D ++ D ++ A A R+IS L PG E +P YL SR
Sbjct: 304 ASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLGSR 360
Query: 392 L---LERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIF- 447
L ER+ ++ E++ G++T + GD + + N + + ++F
Sbjct: 361 LAEFYERAGRVRLVSPEERF------GSITVIGAVSPPGGDFSEPVTQNTLRVV--RVFW 412
Query: 448 -LDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYREL 496
LD L N + P+IN S S + + +S + + Q E+
Sbjct: 413 ALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEI 462
Score = 91.2 bits (227), Expect = 7e-19
Identities = 79/272 (29%), Positives = 120/272 (44%), Gaps = 35/272 (12%)
Query: 665 ILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSR 724
L TG +VID L P KGG + G G GKTV+ L + + +++G GER
Sbjct: 207 PLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVSQHTLSKLADGD---IVIYVGCGERGN 263
Query: 725 EGNDF---YHEMKESN----VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDV 777
E + + E+K+ N ++D+ LI N P R TG++IAE +R+ G DV
Sbjct: 264 EMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDV 323
Query: 778 LLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLA-------EEMGKLQERISSTKNGTI 830
L D+ R+ A E+S L P GY L E G+++ + G+I
Sbjct: 324 ALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSI 383
Query: 831 TSVQAIYVPADDLTDPSPSTT------FTHLDSTIVLSRQIAELGIYPAIDPLESYSK-- 882
T + A+ P D ++P T F LD+ + R +P+I+ L SYS
Sbjct: 384 TVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRH------FPSINWLNSYSLYT 437
Query: 883 -QLDPYI---VGEEHYKVANEVKFYLQKYKEL 910
L + V E + ++ LQ+ EL
Sbjct: 438 EDLRSWYDENVSPEWGALRDQAMEILQRESEL 469
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A.
These ATPases couple ATP hydrolysis to the build up of a
H+ gradient, but V-type ATPases do not catalyze the
reverse reaction. The Vacuolar (V-type) ATPase is found
in the membranes of vacuoles, the golgi apparatus and in
other coated vesicles in eukaryotes. Archaea have a
protein which is similar in sequence to V-ATPases, but
functions like an F-ATPase (called A-ATPase). A similar
protein is also found in a few bacteria.
Length = 369
Score = 90.7 bits (226), Expect = 2e-19
Identities = 71/239 (29%), Positives = 106/239 (44%), Gaps = 27/239 (11%)
Query: 663 NNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGER 722
N L TG +V+D L P +KGG + G G GKTV L + + +++G GER
Sbjct: 138 NEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSNSD---IVIYVGCGER 194
Query: 723 SREG----NDFYH---EMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGK 775
E +F + ++ + LI N P R TG++IAE FR+ G
Sbjct: 195 GNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 254
Query: 776 DVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTKNG 828
+V L D+ R+ A E+S L P GY L + ER S + G
Sbjct: 255 NVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREG 314
Query: 829 TITSVQAIYVPADDLTDPSPSTTFTHLDSTIV-----LSRQIAELGIYPAIDPLESYSK 882
++T V A+ P D ++P T IV L +++A+ +P+I+ L SYSK
Sbjct: 315 SVTIVGAVSPPGGDFSEPVTQATL-----RIVQVFWGLDKKLAQRRHFPSINWLISYSK 368
Score = 90.0 bits (224), Expect = 4e-19
Identities = 81/268 (30%), Positives = 123/268 (45%), Gaps = 47/268 (17%)
Query: 221 RETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN 280
R EK+ P NEPLLTG + +D++ P+ KG I G GKT I ++
Sbjct: 129 RPVKEKLPP--------NEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVI-QQSLSK 179
Query: 281 QKNKNVICIYVCIGQKISSLINVIN---KLKYYN----CMDYTVVVAAT-----AADSAA 328
N +++ IYV G++ + + V+ +L M TV++A T AA A
Sbjct: 180 YSNSDIV-IYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREA- 237
Query: 329 EQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYL 388
S YTG TI EYFRD+G + ++ D ++ A A R+IS L PG E +P YL
Sbjct: 238 ----SIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YL 290
Query: 389 HSRL---LERSSKINKYFLEKKKIFNKNN--GTLTAFPIIETLEGDVTSFIPTNVISITD 443
+RL ER+ ++ K G++T + GD + + + I
Sbjct: 291 GARLASFYERAGRV--------KCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIV- 341
Query: 444 GQIF--LDTNLFNSNYRPAINVGLSVSR 469
Q+F LD L + P+IN +S S+
Sbjct: 342 -QVFWGLDKKLAQRRHFPSINWLISYSK 368
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 591
Score = 89.4 bits (222), Expect = 3e-18
Identities = 76/271 (28%), Positives = 127/271 (46%), Gaps = 28/271 (10%)
Query: 663 NNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGER 722
N L TG +V+D L P ++GG + G G GKTV L + + V++G GER
Sbjct: 207 NTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSK---YSNSDAIVYVGCGER 263
Query: 723 SREGN----DF---YHEM--KESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS 773
E DF E+ +E +++ + +L+ N P R TG+++AE FR+
Sbjct: 264 GNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDM 323
Query: 774 GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERI-------SSTK 826
G +V + D+ R+ A E+S L P+ GY L + ER S +
Sbjct: 324 GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPER 383
Query: 827 NGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSK---Q 883
G+++ V A+ P D +DP S T + L +++A+ +P+++ L SYSK
Sbjct: 384 EGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRA 443
Query: 884 LDPYIVGEEHY----KVANEVKFYLQKYKEL 910
L+ + E+ Y + + K LQ+ ++L
Sbjct: 444 LEEFY--EKFYPEFVPLRTKAKEILQEEEDL 472
Score = 77.5 bits (191), Expect = 1e-14
Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 42/336 (12%)
Query: 208 EFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQ 267
EF KKKF + V P + ++ N PLLTG + +D++ P +G I G
Sbjct: 178 EFQGVKKKFSMLQTWPVRSPRP-VTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFG 236
Query: 268 TGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC---------MDYTVV 318
GKT I+ ++ N + I +YV G++ + + V+ M T +
Sbjct: 237 CGKTVIS-QSLSKYSNSDAI-VYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTL 294
Query: 319 VAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGR 378
VA T+ A + S YTG T+ EYFRD+G + ++ D ++ A A R+IS L P
Sbjct: 295 VANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPAD 354
Query: 379 EAFPGDVFYLHSRL---LERSSKINKYFLEKKKIFN-KNNGTLTAFPIIETLEGDVTSFI 434
+P YL +RL ER+ ++ K + + + G+++ + GD + +
Sbjct: 355 SGYPA---YLGARLASFYERAGRV-------KCLGSPEREGSVSIVGAVSPPGGDFSDPV 404
Query: 435 PTNVISITDGQIF--LDTNLFNSNYRPAINVGLSVSRVGGAAQ------YKIVKKLSGDI 486
+ + I Q+F LD L + P++N +S S+ A + Y L
Sbjct: 405 TSATLGIV--QVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKA 462
Query: 487 RIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISL 522
+ +L + +L + +V K L +KI+L
Sbjct: 463 KEILQEEEDLNEI------VQLVGKDALAETDKITL 492
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional.
Length = 436
Score = 87.0 bits (216), Expect = 7e-18
Identities = 92/349 (26%), Positives = 151/349 (43%), Gaps = 37/349 (10%)
Query: 570 IINLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILN 629
+ K+ S+ +V + G+ V FG T GI VV G+P+ + LGR N
Sbjct: 30 TVERKDGSSLAQVIRLDGD-KVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFN 88
Query: 630 VLGDPIDNKGEINSKKKSPIHTLPPKF--SNQIFNNNILETGIKVIDLLCPFLKGGKIGL 687
G PID E+ + PI P +I ++ TGI +ID+ ++ KI +
Sbjct: 89 GSGKPIDGGPELEGE---PIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPI 145
Query: 688 FGGAGVGKTVNMMELIRNIAIEHKG-CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIY 746
F + G+ N L+ IA++ + + G+G + F + + LD+ +
Sbjct: 146 FSVS--GEPYN--ALLARIALQAEADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFI 201
Query: 747 GQMNEPSGNRLRVALTGLSIAEEFRNSG-KDVLLFIDNIYRFTLAGTEVSAMLGRTPSAV 805
++P L V L++AE+F G K VL+ + ++ F A E+S + + PS
Sbjct: 202 HTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNR 261
Query: 806 GYQPTLAEEMGKLQER-ISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQ 864
GY +L ++ E+ + G+IT + +P DD+T P P T
Sbjct: 262 GYPGSLYSDLASRYEKAVDFEDGGSITIIAVTTMPGDDVTHPVPDNT-----------GY 310
Query: 865 IAELGIY---PAIDPLESYS--KQLDPYIVG----EEHYKVANE-VKFY 903
I E Y IDP S S KQL ++G E+H + N ++ Y
Sbjct: 311 ITEGQFYLRRGRIDPFGSLSRLKQL---VIGKKTREDHGDLMNAMIRLY 356
Score = 52.3 bits (126), Expect = 7e-07
Identities = 64/269 (23%), Positives = 110/269 (40%), Gaps = 36/269 (13%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRET---------VEKIAPGIMDRESVNEPL 241
++ LLGR N G+ ID + ++ V++I P M R
Sbjct: 75 QVTYSESLLGRRFNGSGKPIDGGPE--LEGEPIEIGGPSVNPVKRIVPREMIR------- 125
Query: 242 LTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAI-DTIINQKNKNVICIYVCIGQKISSL 300
TGI ID + + Q+ I +G+ A+ I Q ++I I +G
Sbjct: 126 -TGIPMIDVFNTLVESQKIPIFSV--SGEPYNALLARIALQAEADII-ILGGMGLTFDDY 181
Query: 301 INVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLT 359
+ + + +D TV+ TA+D E + P + E F + + L++ D+T
Sbjct: 182 LFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLTDMT 241
Query: 360 KHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419
A A ++IS+ + + P +PG L+S L R K + ++ G++T
Sbjct: 242 NFADALKEISITMDQIPSNRGYPGS---LYSDLASRYEKAVDF---------EDGGSITI 289
Query: 420 FPIIETLEGDVTSFIPTNVISITDGQIFL 448
+ DVT +P N IT+GQ +L
Sbjct: 290 IAVTTMPGDDVTHPVPDNTGYITEGQFYL 318
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional.
Length = 1017
Score = 81.2 bits (200), Expect = 1e-15
Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 27/242 (11%)
Query: 698 NMMELIRNIAIEHKGCS-------VFIGVGERSREGNDFYHE---MKESN----VLDKVS 743
NM L+ N +H+ ++IG GER E D E +K+ ++++
Sbjct: 662 NMPTLLHNTVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 721
Query: 744 LIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPS 803
LI N P R TG++IAE FR+ G DV L D+ R+ A E+S L P
Sbjct: 722 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPG 781
Query: 804 AVGYQPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
GY LA ++ + ER S + G+++ + A+ P D ++P T +
Sbjct: 782 EEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVK 841
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYI------VGEEHYKVANEVKFYLQKYKEL 910
L +A +PAI+ L SYS +D V E + ++ LQK EL
Sbjct: 842 VFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAEL 901
Query: 911 KD 912
++
Sbjct: 902 QE 903
Score = 73.1 bits (179), Expect = 4e-13
Identities = 68/254 (26%), Positives = 115/254 (45%), Gaps = 14/254 (5%)
Query: 287 ICIYVCIGQKISSLINVIN---KLKYYNC----MDYTVVVAATAADSAAEQYISPYTGCT 339
+ IY+ G++ + + +V+ KLK M+ TV++A T+ A + S YTG T
Sbjct: 684 VVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGIT 743
Query: 340 IGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKI 399
I EYFRD+G D ++ D ++ A A R+IS L PG E +P YL S+L E +
Sbjct: 744 IAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERA 800
Query: 400 NKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRP 459
+ + G+++ + GD + + N + + LD +L + P
Sbjct: 801 GRVVTLGS---DYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFP 857
Query: 460 AINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRE-LESFSKFSSDLDIVTKTQLYNGE 518
AIN S S A + K + + + M + E L+ ++ + IV L E
Sbjct: 858 AINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPDALPERE 917
Query: 519 KISLLMKQKPHENY 532
+ LL+ + E+Y
Sbjct: 918 RAILLVARMLREDY 931
Score = 30.8 bits (69), Expect = 5.0
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 620 GDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPF 679
G+ T+ ++ + P E+ ++ P+ P + ++ L TG +VID P
Sbjct: 166 GEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 680 LKGGKIGLFGGAGVGKTVNMMELIRN-----IAIEHKGCSVFIGVGERSREGNDFYHEMK 734
KGG + G G GK V+ LI I I+ + G G+++ EGN+ + E++
Sbjct: 225 AKGGTAAIPGPFGSGKCVDGDTLILTKEFGLIKIKDL-YEILDGKGKKTVEGNEEWTELE 283
Query: 735 E 735
E
Sbjct: 284 E 284
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 79.4 bits (197), Expect = 4e-15
Identities = 66/196 (33%), Positives = 90/196 (45%), Gaps = 50/196 (25%)
Query: 221 RETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKT----TIAID 276
R EK+ P EPL+TG + ID+ P+ KG I G +GKT +A
Sbjct: 199 RPYKEKLPP--------VEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKTVTQHQLA-- 248
Query: 277 TIINQKNKNV-ICIYVCIGQKISSLINVI------------NKLKYYNCMDYTVVVAAT- 322
K + I IYV G++ + + V+ L M+ TV++A T
Sbjct: 249 -----KWADADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPL-----MERTVLIANTS 298
Query: 323 ----AADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGR 378
AA A S YTG TI EY+RD+G D L++ D ++ A A R+IS L PG
Sbjct: 299 NMPVAAREA-----SIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGE 353
Query: 379 EAFPGDVFYLHSRLLE 394
E +P YL SRL E
Sbjct: 354 EGYPA---YLASRLAE 366
Score = 76.0 bits (188), Expect = 4e-14
Identities = 88/287 (30%), Positives = 126/287 (43%), Gaps = 65/287 (22%)
Query: 666 LETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCS----VFIGVGE 721
L TG +VID P KGG + G G GKTV +A K +++G GE
Sbjct: 211 LITGQRVIDTFFPVAKGGTAAIPGPFGSGKTV----TQHQLA---KWADADIVIYVGCGE 263
Query: 722 RSREGNDFYHEMKESNVLDKVSLIYGQMNEP-SGNRL--R-----------VA------L 761
R GN EM E VL++ + ++ +P +G L R VA
Sbjct: 264 R---GN----EMTE--VLEE----FPELIDPKTGRPLMERTVLIANTSNMPVAAREASIY 310
Query: 762 TGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQER 821
TG++IAE +R+ G DVLL D+ R+ A E+S L P GY LA + + ER
Sbjct: 311 TGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYER 370
Query: 822 --ISSTKNGTITSVQAI-YV--PADDLTDPSPSTTFTHLDSTIV-----LSRQIAELGIY 871
T G SV I V P D ++P T IV L ++A+ +
Sbjct: 371 AGRVKTLGGEEGSVTIIGAVSPPGGDFSEPVTQNTLR-----IVKVFWALDAELADRRHF 425
Query: 872 PAIDPLESYSK---QLDPYI---VGEEHYKVANEVKFYLQKYKELKD 912
PAI+ L SYS Q+ P+ V + ++ +E LQ+ EL++
Sbjct: 426 PAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQE 472
>gnl|CDD|180739 PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated.
Length = 78
Score = 70.7 bits (174), Expect = 4e-15
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
AA+I +GLA++G IG G+LGGK LE +RQPEL L K F+ G
Sbjct: 9 AIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAG 57
>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit
c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy
production and conversion].
Length = 79
Score = 56.9 bits (138), Expect = 3e-10
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
L A + +GLA++G GIG GI+G +E+++RQPE L K F+
Sbjct: 10 LIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLA 58
>gnl|CDD|130327 TIGR01260, ATP_synt_c, ATP synthase, F0 subunit c. This model
describes the subunit c in F1/F0-ATP synthase, a
membrane associated multisubunit complex found in
bacteria and organelles of higher eukaryotes, namely,
mitochondria and chloroplast. This enzyme is
principally involved in the synthesis of ATP from ADP
and inorganic phosphate by coupling the energy derived
from the proton electrochemical gradient across the
biological membrane. A brief description of this
multisubunit enzyme complex: F1 and F0 represent two
major clusters of subunits. The functional role of
subunit c, which is the part of F0 cluster, has been
delineated in-vitro reconstitution experiments. Overall
experimental proof exists that demonstrate the
electrochemical gradient is converted into a rotational
torque that leads to ATP synthesis [Energy metabolism,
ATP-proton motive force interconversion].
Length = 58
Score = 54.7 bits (132), Expect = 1e-09
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 16 ASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
A+IG IG GILGGK LES +RQPEL+ L F+ G
Sbjct: 1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMG 39
>gnl|CDD|184065 PRK13464, PRK13464, F0F1 ATP synthase subunit C; Provisional.
Length = 101
Score = 54.6 bits (131), Expect = 3e-09
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 8 AASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
A ++++ L ++GT IGFG+LGGK LE ++RQPEL LL + F++
Sbjct: 18 AVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAA 64
>gnl|CDD|237150 PRK12608, PRK12608, transcription termination factor Rho;
Provisional.
Length = 380
Score = 58.9 bits (143), Expect = 5e-09
Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 38/250 (15%)
Query: 666 LETG-----IKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVF-IGV 719
LETG ++V+DL+ P KG + + GKTV + ++ +A H + + +
Sbjct: 112 LETGSDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI 171
Query: 720 GERSREGNDFYHEMKESNVLDKVSLIYGQMN-EPSGNRLRVALTGLSIAEEFRNSGKDVL 778
ER E D +K +Y P +RVA L A+ GKDV+
Sbjct: 172 DERPEEVTDMRRSVK--------GEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVV 223
Query: 779 LFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKN----GTITSVQ 834
+ +D++ R A GRT S G A + + + + +N G++T +
Sbjct: 224 ILLDSLTRLARAYNNEVESSGRTLSG-GVD---ARALQRPKRLFGAARNIEEGGSLTIIA 279
Query: 835 AIYVP----ADDLTDPSPSTTFTHLDST----IVLSRQIAELGIYPAIDPLESYSKQLDP 886
V D++ F T IVL R++A+ ++PAID +S +++ +
Sbjct: 280 TALVDTGSRMDEV-------IFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREEL 332
Query: 887 YIVGEEHYKV 896
+ +E KV
Sbjct: 333 LLDSKELEKV 342
Score = 36.6 bits (85), Expect = 0.048
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 248 IDSMIPIGKGQRELIIGDRQTGKTTI 273
+D + PIGKGQR LI+ + GKT +
Sbjct: 124 VDLVAPIGKGQRGLIVAPPRAGKTVL 149
>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C terminal
domain.
Length = 110
Score = 52.7 bits (127), Expect = 2e-08
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 480 KKLSGDIRIMLAQYRELESFSKF--SSDLDIVTKTQLYNGEKISLLMKQKPHENY----- 532
K+++G +++ LAQYREL++ + L K L +I +KQ +
Sbjct: 1 KQVAGQLKLELAQYRELQAIVQLVGEDALSEEDKLTLERARRIEEFLKQNQYSPEPVEKQ 60
Query: 533 --SIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRII 571
+ E I + + F +P + + ++ +
Sbjct: 61 YVPVEETIDLFYALLRGKFDDLPEDALYRIGTIDLAKYKDL 101
>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C.
Length = 66
Score = 51.3 bits (124), Expect = 2e-08
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPEL 41
A + +GLA++G GIG GI G +E+I+R PEL
Sbjct: 3 ALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPEL 38
>gnl|CDD|177001 CHL00061, atpH, ATP synthase CF0 C subunit.
Length = 81
Score = 50.9 bits (122), Expect = 5e-08
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 5 PLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELEN 43
+ AA + +GLASIG G+G G G+ +E I+RQPE E
Sbjct: 9 SVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEG 47
>gnl|CDD|169138 PRK07874, PRK07874, F0F1 ATP synthase subunit C; Validated.
Length = 80
Score = 48.3 bits (115), Expect = 3e-07
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 9 ASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFL 51
++ GLA+IG GIG GI+ GK LE ++RQPE+ L FL
Sbjct: 19 GAVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFL 61
>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family,
beta-barrel domain. This family includes the ATP
synthase alpha and beta subunits the ATP synthase
associated with flagella.
Length = 69
Score = 47.5 bits (114), Expect = 5e-07
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 569 RIINLKNNISINK---------VQQQIGENIVRTIAFGNTNGIKRNTIVVDTG 612
R+ L N + + +G + VR + G T+G+ R V TG
Sbjct: 17 RLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLSRGDEVKRTG 69
>gnl|CDD|180303 PRK05880, PRK05880, F0F1 ATP synthase subunit C; Validated.
Length = 81
Score = 47.9 bits (114), Expect = 6e-07
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
L ++M +IG GIG G+ G L+ ++RQPE + L F+ G
Sbjct: 10 LIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVG 58
>gnl|CDD|224127 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in
translation [Translation, ribosomal structure and
biogenesis].
Length = 439
Score = 48.5 bits (116), Expect = 1e-05
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 92 GLSTSLSLENQKKLIKKITGLNYSSIIRFAYNIEYDYFD-PRCLNQTLNIKFANNTVLSG 150
G T L QK++ + I GL + +R+ + + P+ L+ TL +K N +G
Sbjct: 282 GFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAG 341
Query: 151 QINGTTGYEEAAAQGFVA 168
QI G GY E+AA G +A
Sbjct: 342 QITGVEGYVESAASGLLA 359
>gnl|CDD|238548 cd01128, rho_factor, Transcription termination factor rho is a
bacterial ATP-dependent RNA/DNA helicase. It is a
homohexamer. Each monomer consists of an N-terminal
domain of the OB fold, which is responsible for binding
to cysteine rich nucleotides. This alignment is of the
C-terminal ATP binding domain.
Length = 249
Score = 46.9 bits (112), Expect = 2e-05
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 39/226 (17%)
Query: 671 KVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIG-VGERSREGNDF 729
+V+DL P KG + + GKT + + I H + + + ER E D
Sbjct: 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTD- 63
Query: 730 YHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTL 789
M+ S K +I +EP ++VA L A+ GKDV++ +D+I R
Sbjct: 64 ---MQRSV---KGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLAR 117
Query: 790 AGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKN----GTITSVQAIYVPADDLTD 845
A V G+ S G + K + + +N G++T + A L D
Sbjct: 118 AYNTVVPPSGKILSG-GVDAN---ALHKPKRFFGAARNIEEGGSLT------IIATALVD 167
Query: 846 PSPSTTFTHLDSTI------------VLSRQIAELGIYPAIDPLES 879
T + +D I VL R++AE I+PAID L+S
Sbjct: 168 -----TGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKS 208
Score = 40.0 bits (94), Expect = 0.003
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 23/131 (17%)
Query: 248 IDSMIPIGKGQRELIIGDRQTGKTTI--AIDTIINQKNKNVICIYVCIGQKISSLINVIN 305
+D PIGKGQR LI+ + GKTT+ +I I + + V I + I ++ + ++
Sbjct: 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQR 66
Query: 306 KLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEY-------FRDLGQDCLIIYDDL 358
+K V+A+T D E+++ + E + G+D +I+ D +
Sbjct: 67 SVK-------GEVIAST-FDEPPERHVQ------VAEMVLEKAKRLVEHGKDVVILLDSI 112
Query: 359 TKHAWAYRQIS 369
T+ A AY +
Sbjct: 113 TRLARAYNTVV 123
>gnl|CDD|180942 PRK07354, PRK07354, F0F1 ATP synthase subunit C; Validated.
Length = 81
Score = 42.9 bits (101), Expect = 3e-05
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELE 42
+ AA++ +GLA+IG GIG G G +E I+RQPE E
Sbjct: 10 VVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAE 46
>gnl|CDD|224080 COG1158, Rho, Transcription termination factor [Transcription].
Length = 422
Score = 46.9 bits (112), Expect = 3e-05
Identities = 69/289 (23%), Positives = 107/289 (37%), Gaps = 72/289 (24%)
Query: 624 LGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIK-------VIDLL 676
L ++ V GD + +K + L P + N+ LE VIDL+
Sbjct: 116 LLKVEAVNGDDPEK-----AKNRVLFENLTPLYPNERLK---LERENGSTDLSTRVIDLI 167
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIG-VGERSREGNDFYHEMKE 735
P KG + + GKT + + I H C + + + ER E D M+
Sbjct: 168 SPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTD----MQR 223
Query: 736 SNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVS 795
S K ++ +EP ++VA + A+ GKDV++ +D+I R A V
Sbjct: 224 SV---KGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVV 280
Query: 796 AMLGRT------PSAVGYQPTL-------AEEMGKLQERISSTKNGTITSVQAIYVPADD 842
G+ +A+ ++P EE G L TI A
Sbjct: 281 PSSGKVLSGGVDANAL-HRPKRFFGAARNIEEGGSL----------TII--------ATA 321
Query: 843 LTDPSPSTTFTHLDSTI------------VLSRQIAELGIYPAIDPLES 879
L D T + +D I L R++AE I+PAID +S
Sbjct: 322 LVD-----TGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKS 365
Score = 40.3 bits (95), Expect = 0.003
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 218 IKNRETVEKIAPG------IMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKT 271
KNR E + P ++RE+ + L T + ID + PIGKGQR LI+ + GKT
Sbjct: 130 AKNRVLFENLTPLYPNERLKLERENGSTDLSTRV--IDLISPIGKGQRGLIVAPPKAGKT 187
Query: 272 TI--AIDTIINQKNKNVICIYVCIGQK 296
T+ I I + I + I ++
Sbjct: 188 TLLQNIANAITTNHPECELIVLLIDER 214
>gnl|CDD|184069 PRK13471, PRK13471, F0F1 ATP synthase subunit C; Provisional.
Length = 85
Score = 42.5 bits (100), Expect = 4e-05
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 9 ASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFL 51
A + MG+ +IG GIG G +G +++++RQPE+ ++ + L
Sbjct: 20 AGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLL 62
>gnl|CDD|172066 PRK13466, PRK13466, F0F1 ATP synthase subunit C; Provisional.
Length = 66
Score = 41.9 bits (98), Expect = 5e-05
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 9 ASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFL 51
++ +GLA +G IG G+L L S +RQPE+++ L+ FL
Sbjct: 4 GALALGLACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFL 46
>gnl|CDD|129243 TIGR00137, gid_trmFO, tRNA:m(5)U-54 methyltransferase. This model
represents an orthologous set of proteins present in
relatively few bacteria but very tightly conserved where
it occurs. It is closely related to gidA
(glucose-inhibited division protein A), which appears to
be present in all complete eubacterial genomes so far
and in Saccharomyces cerevisiae. It was designated gid
but is now recognized as a tRNA:m(5)U-54
methyltransferase and is now designated trmFO [Protein
synthesis, tRNA and rRNA base modification].
Length = 433
Score = 45.7 bits (108), Expect = 8e-05
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 92 GLSTSLSLENQKKLIKKITGLNYSSIIRFAYNIEYDYFD-PRCLNQTLNIKFANNTVLSG 150
G T+L QK++ + I GL + +R + + P+ L +L+ K +G
Sbjct: 277 GFQTNLRWGEQKRVFRLIPGLENAEFVRMGVMHRNTFINSPQLLTASLHFKDRQTLFFAG 336
Query: 151 QINGTTGYEEAAAQGFVA 168
Q+ G GY + A G++A
Sbjct: 337 QLTGVEGYVASTAGGWLA 354
>gnl|CDD|162030 TIGR00767, rho, transcription termination factor Rho. This RNA
helicase, the transcription termination factor Rho,
occurs in nearly all bacteria but is missing from the
Cyanobacteria, the Mollicutes (Mycoplasmas), and various
Lactobacillales including Streptococcus. It is also
missing, of course, from the Archaea, which also lack
Nus factors. Members of this family from Micrococcus
luteus, Mycobacterium tuberculosis, and related species
have a related but highly variable long, highly charged
insert near the amino end. Members of this family differ
in the specificity of RNA binding [Transcription,
Transcription factors].
Length = 415
Score = 45.4 bits (108), Expect = 1e-04
Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 36/270 (13%)
Query: 624 LGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETG-----IKVIDLLCP 678
L ++ +V GD + +K + L P + N+ LET +V+DL P
Sbjct: 113 LLKVESVNGDDPEK-----AKNRVLFENLTPLYPNERLR---LETSTEDLSTRVLDLFAP 164
Query: 679 FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIG-VGERSREGNDFYHEMKESN 737
KG + + GKTV + ++ + I H + + + ER E D M+ S
Sbjct: 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTD----MQRSV 220
Query: 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAM 797
K ++ +EP+ ++VA + A+ KDV++ +D+I R A V+
Sbjct: 221 ---KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPA 277
Query: 798 LGRTPSAVGYQPTLAEEMGKLQERISSTKN----GTITSVQAIYVPADDLTDPSPSTTFT 853
G+ S G + + + + +N G++T + + D F
Sbjct: 278 SGKVLSG-GVDAN---ALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMD---EVIFE 330
Query: 854 HLDST----IVLSRQIAELGIYPAIDPLES 879
T + L R++A+ I+PAID +S
Sbjct: 331 EFKGTGNMELHLDRKLADRRIFPAIDIKKS 360
Score = 41.2 bits (97), Expect = 0.002
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 218 IKNRETVEKIAPGIMDR----ESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTI 273
KNR E + P + E+ E L T + +D PIGKGQR LI+ + GKT +
Sbjct: 127 AKNRVLFENLTPLYPNERLRLETSTEDLSTRV--LDLFAPIGKGQRGLIVAPPKAGKTVL 184
Query: 274 --AIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQY 331
I I + + V I + I ++ + ++ +K VVA+T D A ++
Sbjct: 185 LQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVK-------GEVVAST-FDEPASRH 236
Query: 332 ISPYTGCTIGEYFR--DLGQDCLIIYDDLTKHAWAYRQIS 369
+ I + R + +D +I+ D +T+ A AY ++
Sbjct: 237 VQ-VAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVT 275
>gnl|CDD|235416 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid;
Reviewed.
Length = 436
Score = 43.6 bits (104), Expect = 4e-04
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 92 GLSTSLSLENQKKLIKKITGLNYSSIIRFAY---NIEYDYFD-PRCLNQTLNIKFANNTV 147
G T L QK++ + I GL + +R+ N + + P+ L+ TL +K N
Sbjct: 278 GFQTKLKWGEQKRVFRMIPGLENAEFVRYGVMHRN---TFINSPKLLDPTLQLKKRPNLF 334
Query: 148 LSGQINGTTGYEEAAAQGFVA 168
+GQI G GY E+AA G +A
Sbjct: 335 FAGQITGVEGYVESAASGLLA 355
>gnl|CDD|184068 PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional.
Length = 79
Score = 39.3 bits (92), Expect = 5e-04
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 8 AASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLI 52
A I LA IG GIG GI GK +E++ RQPE ++ T L+
Sbjct: 14 GAGIAA-LAGIGAGIGIGIATGKAVEAVGRQPEASGKIM-STMLL 56
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 40.0 bits (93), Expect = 0.001
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 17/120 (14%)
Query: 681 KGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD 740
G I + G G GKT L R + G V GE E VLD
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGG--VIYIDGEDILEE-----------VLD 47
Query: 741 KVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGR 800
++ LI + SG+ L++A + + +L +D I A E +L
Sbjct: 48 QLLLIIVGGKKASGSGELRLRLALALARKLKPD----VLILDEITSLLDAEQEALLLLLE 103
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 41.4 bits (98), Expect = 0.002
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 238 NEP-LLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTI 273
EP LT + ID ++PIGKGQR LI+ + GKTTI
Sbjct: 397 TEPKKLTT-RVIDLIMPIGKGQRGLIVSPPKAGKTTI 432
>gnl|CDD|237390 PRK13467, PRK13467, F0F1 ATP synthase subunit C; Provisional.
Length = 66
Score = 34.8 bits (80), Expect = 0.013
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 3 NIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
N+ + A + LA +G +G G L L +S +RQPE+ L ++ +I G
Sbjct: 2 NLTILA----LALACMGVSLGEGFLMANLFKSAARQPEMIGQL--RSLMILG 47
>gnl|CDD|236490 PRK09376, rho, transcription termination factor Rho; Provisional.
Length = 416
Score = 38.2 bits (90), Expect = 0.019
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 248 IDSMIPIGKGQRELIIGDRQTGKTTI 273
ID + PIGKGQR LI+ + GKT +
Sbjct: 160 IDLIAPIGKGQRGLIVAPPKAGKTVL 185
Score = 34.7 bits (81), Expect = 0.22
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 31/163 (19%)
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGI------KVIDLLCPFLKG--GKIGLFGGAGV 693
++ + L P + N+ LETG ++IDL+ P KG G I V
Sbjct: 126 KARNRPLFENLTPLYPNERLR---LETGNPEDLSTRIIDLIAPIGKGQRGLI-------V 175
Query: 694 -----GKTVNMMELIRNIAIEHKGCSVFIG-VGERSREGNDFYHEMKESNVLDKVSLIYG 747
GKTV + + +I H + + + ER E D M+ S V +V +
Sbjct: 176 APPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTD----MQRS-VKGEV--VAS 228
Query: 748 QMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLA 790
+EP+ ++VA + A+ GKDV++ +D+I R A
Sbjct: 229 TFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARA 271
Score = 34.3 bits (80), Expect = 0.32
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 859 IVLSRQIAELGIYPAIDPLES 879
+ L R++AE I+PAID S
Sbjct: 341 LHLDRKLAEKRIFPAIDINRS 361
>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal
transduction [Signal transduction mechanisms].
Length = 260
Score = 37.4 bits (87), Expect = 0.020
Identities = 48/243 (19%), Positives = 73/243 (30%), Gaps = 56/243 (23%)
Query: 239 EPLLTGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQK 296
E + TGI +D ++ G +G LI G TGKT A+ + + +YV +
Sbjct: 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62
Query: 297 ISSLINVINKLKYYNCMDYTV--------VVAATAADSAAEQYISP------YTGCTIGE 342
L+ D V ++ A ++ + I E
Sbjct: 63 PEELLENARSFG----WDLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIRE 118
Query: 343 YFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKY 402
G D ++I D +T+ YL+ L R
Sbjct: 119 IVEKEGADRVVI-DSITELT-----------------------LYLNDPALVR------R 148
Query: 403 FLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVI-SITDGQIFLDTNLFNSN-YRPA 460
L K F K G + T E V + V I DG I LD R
Sbjct: 149 ILLLLKRFLKKLGVTSLL----TTEAPVEERGESGVEEYIVDGVIRLDLKEIEGGGDRRY 204
Query: 461 INV 463
+ +
Sbjct: 205 LRI 207
Score = 29.0 bits (65), Expect = 9.6
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 14/136 (10%)
Query: 666 LETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERS 723
+ TGI +D + +G + + G G GKT+ ++ + A E + +++ E
Sbjct: 5 IPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPV-LYVSTEESP 63
Query: 724 RE--------GNDF--YHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNS 773
E G D Y E + +LD G ++ G+ L + I E
Sbjct: 64 EELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKE 123
Query: 774 GKDVLLFIDNIYRFTL 789
G D ++ ID+I TL
Sbjct: 124 GADRVV-IDSITELTL 138
>gnl|CDD|235949 PRK07159, PRK07159, F0F1 ATP synthase subunit C; Validated.
Length = 100
Score = 33.3 bits (76), Expect = 0.10
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 9 ASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLI 52
A + M + IG G+G G GK +E+I+R PE + + K I
Sbjct: 36 AGLAM-IGVIGVGLGQGYAFGKAVEAIARNPEAQKQVF-KLLFI 77
>gnl|CDD|184067 PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.
Length = 82
Score = 30.8 bits (70), Expect = 0.60
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 4 IPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSL 45
+ + AA + + + +IG + G L++I++QP+ ++
Sbjct: 8 VSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTI 49
>gnl|CDD|132365 TIGR03322, alt_F1F0_F0_C, alternate F1F0 ATPase, F0 subunit C. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, and in principle may run in either direction. This
model represents the F0 subunit C of this apparent
second ATP synthase.
Length = 86
Score = 30.6 bits (69), Expect = 0.70
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFL 51
+ A + + + SIG +G G + L ++++QP+ N++ F+
Sbjct: 11 IVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFV 56
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 31.5 bits (72), Expect = 1.0
Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 30/133 (22%)
Query: 672 VIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYH 731
++ L P +GG L G G GK+ ++L +A G
Sbjct: 25 LVKGLLP--RGGLTLLAGAPGTGKSTLALDLAAAVA---TGRPFLGPFPVEPG------- 72
Query: 732 EMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAG 791
VL Y E S LR L ++ E L+ ID +
Sbjct: 73 -----RVL------YLDG-EDSEAGLRRRL--RALGEALEEIEGPDLVVIDPLASLLGGD 118
Query: 792 ----TEVSAMLGR 800
V A+L
Sbjct: 119 ENDNAAVGALLAA 131
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 30.6 bits (70), Expect = 1.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 261 LIIGDRQTGKTTIAIDTIINQKNKNVI 287
+I G RQ GKTT+ + + ++N++
Sbjct: 6 VITGPRQVGKTTLLLQFLKELLSENIL 32
>gnl|CDD|181027 PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated.
Length = 74
Score = 28.8 bits (65), Expect = 2.3
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 8 AASIMMGLASIG---TGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
I GLA IG +G G + G L R P +S +L+ G
Sbjct: 6 LKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQ--FGYLLIG 53
>gnl|CDD|187839 cd09708, Csf4_U, CRISPR/Cas system-associated DinG family helicase
Csf4. CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
DinG family DNA helicase.
Length = 632
Score = 31.5 bits (71), Expect = 2.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 680 LKGGKIGLF-GGAGVGKTVNMMELIRNIAIEHKGCSVFIGV 719
L+ +IG+ GVGKT+ M+ + E + I V
Sbjct: 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAV 53
>gnl|CDD|234113 TIGR03117, cas_csf4, CRISPR type AFERR-associated DEAD/DEAH-box
helicase Csf4. Members of this family show up near
CRISPR repeats in Acidithiobacillus ferrooxidans ATCC
23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens
DSM 15236. In the latter two species, the CRISPR/cas
locus is found on a plasmid. This family is one of
several characteristic of a type of CRISPR-associated
(cas) gene cluster we designate Aferr after A.
ferrooxidans, where it is both chromosomal and the only
type of cas gene cluster found. The gene is designated
csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein
1), as it lies farthest (fourth closest) from the
repeats in the A. ferrooxidans genome [Mobile and
extrachromosomal element functions, Other].
Length = 636
Score = 31.5 bits (71), Expect = 2.6
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 680 LKGGKIGLF-GGAGVGKTVNMMELIRNIAIEHKGCSVFIGV 719
L+ +IG+ GVGKT+ M+ + E + I V
Sbjct: 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAV 53
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 31.0 bits (71), Expect = 2.8
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 496 LESFSKFSSDLDIVTKTQLYNG--EKISLLMKQKP-----------HENYSIVELIIILL 542
L +F + +IV K +L +G K+S+L K KP +N++ +E ++ L
Sbjct: 6 LSELVQFLKNCEIVKKLKLIDGKFGKVSVL-KHKPTQKLFVQKIIKAKNFNAIEPMVHQL 64
Query: 543 IIKNRFFFKI 552
+ N F K+
Sbjct: 65 MKDNPNFIKL 74
>gnl|CDD|221980 pfam13204, DUF4038, Protein of unknown function (DUF4038). A
family of putative cellulases.
Length = 287
Score = 30.7 bits (70), Expect = 3.1
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 842 DLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESY----SKQLDPYIVGEEHYKVA 897
D T P+ F H D I AE GIYPA+ PL P I+ EE+ K
Sbjct: 78 DFTKPNEEY-FDHADYII---EVAAEKGIYPALVPLWGDNVVPGTGTGPNIMPEENAK-- 131
Query: 898 NEVKFYLQKYKEL 910
K+ + +YK+
Sbjct: 132 AYGKYLVARYKDF 144
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 31.1 bits (71), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 767 AEEFRNSGKDVLLFIDNIYRF 787
A + R G+ +LF+D I+RF
Sbjct: 96 ARKNRLLGRRTILFLDEIHRF 116
>gnl|CDD|223382 COG0305, DnaB, Replicative DNA helicase [DNA replication,
recombination, and repair].
Length = 435
Score = 30.7 bits (70), Expect = 3.9
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 666 LETGIKVID-LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717
+ TG +D + F G I + G+GKT + + N A + +
Sbjct: 179 VPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIF 231
>gnl|CDD|221101 pfam11382, DUF3186, Protein of unknown function (DUF3186). This
bacterial family of proteins has no known function.
Length = 307
Score = 30.4 bits (69), Expect = 4.7
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 9 ASIMMGLASIGTGIGFGILGGKLLESISRQ-PELENSL 45
A++ + LA IG +G G+L LL + + +L
Sbjct: 12 AAVFLALA-IGIVLGSGLLQENLLSGLEDEFSDLRTEN 48
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 30.4 bits (70), Expect = 5.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 767 AEEFRNSGKDVLLFIDNIYRFT 788
A + R++G+ +LFID I+RF
Sbjct: 84 ARQRRSAGRRTILFIDEIHRFN 105
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 500
Score = 29.9 bits (68), Expect = 6.8
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 138 LNIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFE 197
++I N Y E G V VL+DD ++ G K F + IP+
Sbjct: 409 VHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDD-RDERPGVK-FADADLIGIPLRIV 466
Query: 198 LLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDR 234
+ R+ + E +K R+ EK A I
Sbjct: 467 VGKRLAEGEVE---------VKCRKCGEKEAVTIEAL 494
>gnl|CDD|180501 PRK06271, PRK06271, V-type ATP synthase subunit K; Validated.
Length = 213
Score = 29.4 bits (66), Expect = 6.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 9 ASIMMGLASIGTGIGFGILGGKLLESISRQPE 40
A + +G+A +G+GIG GI G ++ P
Sbjct: 5 AGLAVGIAGLGSGIGAGITGASGAGVVAEDPN 36
>gnl|CDD|180177 PRK05636, PRK05636, replicative DNA helicase; Provisional.
Length = 505
Score = 29.4 bits (66), Expect = 9.2
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 668 TGIKVIDLLCPFLKGGKIGLFGG-AGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREG 726
TG K +D L L+GG++ + GVGK+ ++ +R+ +I+H SV
Sbjct: 250 TGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVI---------- 299
Query: 727 NDFYHEMKESNVL 739
F EM +S ++
Sbjct: 300 --FSLEMSKSEIV 310
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.395
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,289,727
Number of extensions: 4879673
Number of successful extensions: 5406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5110
Number of HSP's successfully gapped: 218
Length of query: 915
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 809
Effective length of database: 6,236,078
Effective search space: 5044987102
Effective search space used: 5044987102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.9 bits)