RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy210
(915 letters)
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 648 bits (1675), Expect = 0.0
Identities = 219/338 (64%), Positives = 262/338 (77%), Gaps = 7/338 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V Q +GE+ VRTIA T G+ R V+D+G PI PVG TLGRI+NV+G+PID +G I
Sbjct: 53 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 112
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMME 701
+K+ + IH P+F IL TGIKV+DLL P+ KGGKIGLFGGAGVGKTV +ME
Sbjct: 113 KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIME 172
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD------KVSLIYGQMNEPSGN 755
LI N+A H G SVF GVGER+REGND YHEM ES V++ KV+L+YGQMNEP G
Sbjct: 173 LINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232
Query: 756 RLRVALTGLSIAEEFRNS-GKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEE 814
R RVALTGL++AE FR+ G+DVLLFIDNI+RFT AG+EVSA+LGR PSAVGYQPTLA +
Sbjct: 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 292
Query: 815 MGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAI 874
MG +QERI++TK G+ITSVQAIYVPADDLTDP+P+TTF HLD+T VLSR IAELGIYPA+
Sbjct: 293 MGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 352
Query: 875 DPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
DPL+S S+ +DP IVG EHY VA V+ LQ YK L+D
Sbjct: 353 DPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQD 390
Score = 68.0 bits (167), Expect = 6e-12
Identities = 67/233 (28%), Positives = 91/233 (39%), Gaps = 58/233 (24%)
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
L +GQK + IPVG E LGRI+N GE ID + K + AP ++
Sbjct: 73 LVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSV 132
Query: 237 VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQK 296
E L+TGIK +D + P KG + + G GKT +
Sbjct: 133 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL----------------------- 169
Query: 297 ISSLINVI--------------------NKLKYYNCMDYTVVVAATAADSAAE----QYI 332
I LIN + N L Y+ M + V+ A S Q
Sbjct: 170 IMELINNVAKAHGGYSVFAGVGERTREGNDL--YHEMIESGVINLKDATSKVALVYGQMN 227
Query: 333 SP--------YTGCTIGEYFRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPP 376
P TG T+ EYFRD GQD L+ D++ + A ++S LL R P
Sbjct: 228 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 280
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 636 bits (1643), Expect = 0.0
Identities = 228/404 (56%), Positives = 299/404 (74%), Gaps = 2/404 (0%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
AV++ +L +G K CT +I E+PVG LLGR+VN+ G ID K VE I
Sbjct: 73 AVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAI 132
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
APG+++R+SV++P+ TG K++DSMIPIG+GQRELIIGDRQTGKT +AID IINQ++ +
Sbjct: 133 APGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIK 192
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347
CIYV IGQK S++ NV+ KL+ + + T+VV ATA++SAA QY++PY GC +GEYFRD
Sbjct: 193 CIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDR 252
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407
G+D LIIYDDL+K A AYRQISLLLRRPPGREAFPGDVFYLHSRLLER++++N ++E
Sbjct: 253 GEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAF 312
Query: 408 KIFNKNNGT--LTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGL 465
T LTA PIIET GDV++F+PTNVISITDGQIFL+TNLFN+ RPA+N G+
Sbjct: 313 TKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGI 372
Query: 466 SVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMK 525
SVSRVGGAAQ KI+KKLSG IR LAQYREL +FS+F+SDLD T+ QL +G+K++ L+K
Sbjct: 373 SVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLK 432
Query: 526 QKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
QK + S+ + ++L + + + + +I FE ++ Y
Sbjct: 433 QKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVD 476
Score = 91.6 bits (228), Expect = 2e-19
Identities = 77/344 (22%), Positives = 150/344 (43%), Gaps = 29/344 (8%)
Query: 588 ENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
+ V + G + V TG+ + PVG LGR++N LG PID KG ++ S
Sbjct: 68 RDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFS 127
Query: 648 PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707
+ + P + + ++TG K +D + P +G + + G GKT ++ I N
Sbjct: 128 AVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR 187
Query: 708 IEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIA 767
C +++ +G+++ ++ +++E L ++ +E + + G ++
Sbjct: 188 DSGIKC-IYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMG 246
Query: 768 EEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP--------TLAEEMGKLQ 819
E FR+ G+D L+ D++ + +A ++S +L R P + P L E ++
Sbjct: 247 EYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAF-PGDVFYLHSRLLERAARVN 305
Query: 820 ERISSTKN--------GTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIY 871
G++T++ I A D++ P+ + D I L + GI
Sbjct: 306 AEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIR 365
Query: 872 PAIDPLESYSKQLDPYIVG-----EEHYKVANEVKFYLQKYKEL 910
PA++P S S+ VG + K++ ++ L +Y+EL
Sbjct: 366 PAVNPGISVSR------VGGAAQTKIMKKLSGGIRTALAQYREL 403
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 632 bits (1633), Expect = 0.0
Identities = 212/339 (62%), Positives = 260/339 (76%), Gaps = 8/339 (2%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
VQQ +G N VR +A T+G+ R V+DTG P+ PVG TLGRI NVLG+P+DN +
Sbjct: 65 VQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPV 124
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMME 701
+++ SPIH P F+ +I ETGIKV++LL P+ +GGKIGLFGGAGVGKTV +ME
Sbjct: 125 DTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIME 184
Query: 702 LIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLD-------KVSLIYGQMNEPSG 754
LI NIA H G SVF GVGER+REGND Y EMKES V++ KV+L+YGQMNEP G
Sbjct: 185 LINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244
Query: 755 NRLRVALTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAE 813
R+RV LT L++AE FR+ + +DVLLFIDNI+RF AG+EVSA+LGR PSAVGYQPTL+
Sbjct: 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLST 304
Query: 814 EMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPA 873
EMG LQERI+STK G+ITS+QA+YVPADDLTDP+P+TTF HLD+T VLSR +A GIYPA
Sbjct: 305 EMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPA 364
Query: 874 IDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+DPL+S S L P IVGEEHY++A VK LQ+YKEL+D
Sbjct: 365 VDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQD 403
Score = 64.3 bits (157), Expect = 1e-10
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 37/223 (16%)
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRES 236
LT+G + T +PVG LGRI N GE +DN + + + + AP ++
Sbjct: 85 LTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDT 144
Query: 237 VNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQ 295
TGIK ++ + P +G + + G GKT + ++ I N K + ++ +G+
Sbjct: 145 KLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGE 204
Query: 296 ------------KISSLINVINKLKYYNCMDY---------TVVVAATAADSAAEQYISP 334
K S +IN N + + Y + V T
Sbjct: 205 RTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLT------------ 252
Query: 335 YTGCTIGEYFRDL-GQDCLIIYDDLTKHAWAYRQISLLLRRPP 376
T+ EYFRD+ QD L+ D++ + A ++S LL R P
Sbjct: 253 --ALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMP 293
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 628 bits (1621), Expect = 0.0
Identities = 213/333 (63%), Positives = 266/333 (79%), Gaps = 2/333 (0%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
V +G++ VRTIA +T+G+ R V+DTG PI PVG TLGR+ NVLG+PID +G+I
Sbjct: 50 VALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDI 109
Query: 642 NSK-KKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMM 700
+ ++ PIH PKF ILETGIKV+DLL P++KGGKIGLFGGAGVGKTV +
Sbjct: 110 PADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQ 169
Query: 701 ELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
ELI NIA EH G SVF GVGER+REGND YHEMK+S V+ K ++++GQMNEP G R+RVA
Sbjct: 170 ELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229
Query: 761 LTGLSIAEEFRN-SGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQ 819
LTGL++AE FR+ G+D LLFIDNI+RFT AG+EVSA+LGR PSA+GYQPTLA EMG+LQ
Sbjct: 230 LTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQ 289
Query: 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
ERI+ST G+ITS+QAIYVPADD TDP+P+TTF+HLD+T L R++AE+GIYPA+DPL S
Sbjct: 290 ERITSTAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVS 349
Query: 880 YSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
S+ L P IVGEEHY+VA +V+ L++YKEL+D
Sbjct: 350 TSRALAPEIVGEEHYQVARKVQQTLERYKELQD 382
Score = 69.3 bits (170), Expect = 2e-12
Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 3/203 (1%)
Query: 177 LTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKN-RETVEKIAPGIMDRE 235
L +G + T +PVG LGR+ N GE ID + R+ + + AP +
Sbjct: 70 LIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELA 129
Query: 236 SVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIG 294
+ E L TGIK +D + P KG + + G GKT + + I N + I ++ +G
Sbjct: 130 TEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVG 189
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL-GQDCLI 353
++ ++ +++K + T +V + + TG T+ EYFRD GQD L+
Sbjct: 190 ERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLL 249
Query: 354 IYDDLTKHAWAYRQISLLLRRPP 376
D++ + A ++S LL R P
Sbjct: 250 FIDNIFRFTQAGSEVSALLGRMP 272
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 620 bits (1601), Expect = 0.0
Identities = 214/402 (53%), Positives = 292/402 (72%), Gaps = 9/402 (2%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
V++ + +G + T +I E+PVG LLGR+VN G+ +D + +E
Sbjct: 73 VVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESP 132
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
APG+MDR+SV+EPL TGIK+IDSMIPIG+GQRELIIGDRQTGKTTIAIDTIINQK ++VI
Sbjct: 133 APGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVI 192
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347
CIYV IGQK S++ V+ L+ ++ +DYT+VV A+A++ A Y++PY GC +GEYF
Sbjct: 193 CIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYK 252
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407
G+ L++YDDL+K A AYR++SLLLRRPPGREA+PGDVFYLHSRLLER++K++
Sbjct: 253 GKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSD------ 306
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSV 467
K G+LTA P IET GDV+++IPTNVISITDGQIFL+++LF S RPA+NVG+SV
Sbjct: 307 ---EKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISV 363
Query: 468 SRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQK 527
SRVGGAAQ K +KK++G +R+ LAQYREL++F++F SDLD T+ +L GE+ ++KQ
Sbjct: 364 SRVGGAAQIKAMKKVAGTLRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVEILKQD 423
Query: 528 PHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
H+ + E +I + + N F IP++ + FE ++ + R
Sbjct: 424 EHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMR 465
Score = 97.4 bits (243), Expect = 3e-21
Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 24/336 (7%)
Query: 588 ENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
E+ V + G I+ T V TG+ + PVG+ LGR++N LG P+D +G I + +
Sbjct: 68 EDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYR 127
Query: 648 PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707
PI + P ++ + L+TGIK ID + P +G + + G GKT ++ I N
Sbjct: 128 PIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK 187
Query: 708 IEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIA 767
+ C +++ +G++ +++ + LD ++ +EP+ G ++
Sbjct: 188 GQDVIC-IYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMG 246
Query: 768 EEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP--------TLAEEMGKLQ 819
E F GK L+ D++ + A E+S +L R P Y P L E KL
Sbjct: 247 EYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAY-PGDVFYLHSRLLERAAKLS 305
Query: 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G++T++ I A D++ P+ + D I L + G+ PA++ S
Sbjct: 306 DEKGG---GSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGIS 362
Query: 880 YSKQLDPYIVG-----EEHYKVANEVKFYLQKYKEL 910
S+ VG + KVA ++ L +Y+EL
Sbjct: 363 VSR------VGGAAQIKAMKKVAGTLRLDLAQYREL 392
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 620 bits (1601), Expect = 0.0
Identities = 208/402 (51%), Positives = 292/402 (72%), Gaps = 9/402 (2%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
+++ + K++ +G ++I E+PVG ELLGR+VN GE +D K KN +E
Sbjct: 86 IIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIK 145
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
APG++ R+ V+ PL TGIK+IDSMIPIG+GQRELIIGDRQTGKT IAIDTIINQK + V
Sbjct: 146 APGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVY 205
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347
CIYV IGQK S++ +I+KL+ Y M+YT VV A+A+D A+ QYI+PY GC +GEYF
Sbjct: 206 CIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYS 265
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407
G+D L++YDDL+KHA AYRQ+SLL+RRPPGREA+PGD+FYLHSRLLER+ ++N
Sbjct: 266 GRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLND------ 319
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSV 467
G+LTA PI+ET D++++IPTNVISITDGQI+L+ LF + RPAINVGLSV
Sbjct: 320 ---KLGGGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSV 376
Query: 468 SRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQK 527
SRVGG+AQ K +K+++G +RI LAQYRELE+F++F+++LD T+ Q+ G+++ L+KQ+
Sbjct: 377 SRVGGSAQIKAMKQVAGMLRIDLAQYRELETFAQFATELDPATRAQIIRGQRLMELLKQE 436
Query: 528 PHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
+ + E +++L + +P++++ FE +++
Sbjct: 437 QYSPMPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRFMH 478
Score = 98.5 bits (246), Expect = 1e-21
Identities = 84/336 (25%), Positives = 156/336 (46%), Gaps = 24/336 (7%)
Query: 588 ENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
E+ V I G IK V + I PVG+ LGR++N LG+P+D KG IN+K
Sbjct: 81 EDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFR 140
Query: 648 PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707
PI P + + L+TGIK ID + P +G + + G GKT ++ I N
Sbjct: 141 PIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK 200
Query: 708 IEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIA 767
+ C +++ +G++ ++++ ++ +++ ++P+ + G ++
Sbjct: 201 GQGVYC-IYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMG 259
Query: 768 EEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP--------TLAEEMGKLQ 819
E F SG+D L+ D++ + +A ++S ++ R P Y P L E +L
Sbjct: 260 EYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAY-PGDIFYLHSRLLERAVRLN 318
Query: 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+++ G++T++ + A+D++ P+ + D I L + G PAI+ S
Sbjct: 319 DKL---GGGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLS 375
Query: 880 YSKQLDPYIVG-----EEHYKVANEVKFYLQKYKEL 910
S+ VG + +VA ++ L +Y+EL
Sbjct: 376 VSR------VGGSAQIKAMKQVAGMLRIDLAQYREL 405
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 618 bits (1596), Expect = 0.0
Identities = 198/402 (49%), Positives = 274/402 (68%), Gaps = 9/402 (2%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
VL+ D + +G T +I +IPV LGR++N+ + ID + + +E
Sbjct: 74 VVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESP 133
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVI 287
APGIM R SV EPL TG+ +ID+MIP+G+GQRELIIGDRQTGKT +A DTI+NQ+ +NVI
Sbjct: 134 APGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 193
Query: 288 CIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDL 347
C+YV IGQK SS+ V+ + M+YT+VVA TA A QY++PYTG + EYF
Sbjct: 194 CVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYR 253
Query: 348 GQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKK 407
+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K++
Sbjct: 254 ERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSS------ 307
Query: 408 KIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSV 467
G++TA PI+ET GDV+++IPTNVISITDGQIFL +LFN+ RPAINVG+SV
Sbjct: 308 ---LLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISV 364
Query: 468 SRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQK 527
SRVG AAQ K +KK++G +++ LAQ+ ELE+F++F+SDLD T+ QL G+++ L+KQ
Sbjct: 365 SRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQP 424
Query: 528 PHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
++ E ++ + N + + + Q+ + + + Y +
Sbjct: 425 QSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVK 466
Score = 97.8 bits (244), Expect = 2e-21
Identities = 83/336 (24%), Positives = 148/336 (44%), Gaps = 24/336 (7%)
Query: 588 ENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
N V + G+ I+ + V TG+ PV + LGR++N L PID +GEI + +
Sbjct: 69 SNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESR 128
Query: 648 PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707
I + P ++ L+TG+ ID + P +G + + G GKT + I N
Sbjct: 129 LIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQ 188
Query: 708 IEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIA 767
++ C V++ +G+++ +E ++ ++ + P+ + TG ++A
Sbjct: 189 GQNVIC-VYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALA 247
Query: 768 EEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP--------TLAEEMGKLQ 819
E F + L+ D++ + A ++S +L R P Y P L E KL
Sbjct: 248 EYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAY-PGDVFYLHSRLLERAAKLS 306
Query: 820 ERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLES 879
+ G++T++ + A D++ P+ + D I LS + GI PAI+ S
Sbjct: 307 SLLGE---GSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGIS 363
Query: 880 YSKQLDPYIVG-----EEHYKVANEVKFYLQKYKEL 910
S+ VG + KVA ++K L ++ EL
Sbjct: 364 VSR------VGSAAQIKAMKKVAGKLKLELAQFAEL 393
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 612 bits (1581), Expect = 0.0
Identities = 211/410 (51%), Positives = 284/410 (69%), Gaps = 17/410 (4%)
Query: 168 AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKI 227
V+ + K + +G T I ++PVG ELLGR+V++ G ID K K R V
Sbjct: 73 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLK 132
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK----- 282
APGI+ R SV EP+ TGIK++DS++PIG+GQRELIIGDRQTGKT+IAIDTIINQK
Sbjct: 133 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 192
Query: 283 ---NKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCT 339
K + CIYV IGQK S++ ++ +L + M YT+VV+ATA+D+A QY++PY+GC+
Sbjct: 193 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCS 252
Query: 340 IGEYFRDLGQDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKI 399
+GEYFRD G+ LIIYDDL+K A AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+
Sbjct: 253 MGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 312
Query: 400 NKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRP 459
N G+LTA P+IET GDV+++IPTNVISITDGQIFL+T LF RP
Sbjct: 313 ND---------AFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRP 363
Query: 460 AINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEK 519
AINVGLSVSRVG AAQ + +K+++G +++ LAQYRE+ +F++F SDLD T+ L G +
Sbjct: 364 AINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVR 423
Query: 520 ISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
++ L+KQ + +I E + ++ + K+ +I FE + +
Sbjct: 424 LTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVI 473
Score = 94.3 bits (235), Expect = 3e-20
Identities = 86/343 (25%), Positives = 155/343 (45%), Gaps = 30/343 (8%)
Query: 588 ENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
+ V + FGN IK IV TG + PVG+ LGR+++ LG+ ID KG I SK +
Sbjct: 68 PDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARR 127
Query: 648 PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707
+ P +I ++TGIK +D L P +G + + G GKT ++ I N
Sbjct: 128 RVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 187
Query: 708 IEHKGCS-------VFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVA 760
+ G +++ +G++ + +++ + ++ ++ + +
Sbjct: 188 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAP 247
Query: 761 LTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQP--------TLA 812
+G S+ E FR++GK L+ D++ + +A ++S +L R P Y P L
Sbjct: 248 YSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY-PGDVFYLHSRLL 306
Query: 813 EEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYP 872
E K+ + + G++T++ I A D++ P+ + D I L ++ GI P
Sbjct: 307 ERAAKMND---AFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRP 363
Query: 873 AIDPLESYSKQLDPYIVG-----EEHYKVANEVKFYLQKYKEL 910
AI+ S S+ VG +VA +K L +Y+E+
Sbjct: 364 AINVGLSVSR------VGSAAQTRAMKQVAGTMKLELAQYREV 400
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 391 bits (1005), Expect = e-125
Identities = 92/358 (25%), Positives = 149/358 (41%), Gaps = 30/358 (8%)
Query: 581 KVQQQIGENIVRTIAFG--NTNGIKRNTIVVDTGKPI----LTPVGDCTLGRILNVLGDP 634
+ ++G+ +V G I + I+V G + GD T+ ++ + P
Sbjct: 121 IPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTP 180
Query: 635 IDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVG 694
E+ ++ P+ P + ++ L TG +VID P KGG + G AG G
Sbjct: 181 SGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSG 239
Query: 695 KTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEM-------KESNVLDKVSLIYG 747
KTV +L + ++IG GER E D E ++++ LI
Sbjct: 240 KTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIAN 296
Query: 748 QMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGY 807
N P R TG++IAE FR+ G DV L D+ R+ A E+S L P GY
Sbjct: 297 TSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGY 356
Query: 808 QPTLAEEMGKLQERI-------SSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIV 860
LA ++ + ER S + G+++ + A+ P D ++P T +
Sbjct: 357 PAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWA 416
Query: 861 LSRQIAELGIYPAIDPLESYSKQLDPY------IVGEEHYKVANEVKFYLQKYKELKD 912
L +A +PAI+ L SYS +D + E + ++ LQK EL++
Sbjct: 417 LDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQE 474
Score = 130 bits (329), Expect = 1e-31
Identities = 78/326 (23%), Positives = 135/326 (41%), Gaps = 29/326 (8%)
Query: 189 IFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSI 248
+ G + ++ K+ + R V P ++ PL+TG + I
Sbjct: 160 VEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVI 218
Query: 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLK 308
D+ P KG I G +GKT + + V+ IY+ G++ + + +V+ +
Sbjct: 219 DTFFPQAKGGTAAIPGPAGSGKTVT-QHQLAKWSDAQVV-IYIGCGERGNEMTDVLEEFP 276
Query: 309 YYNC-------MDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKH 361
M+ TV++A T+ A + S YTG TI EYFRD+G D ++ D ++
Sbjct: 277 KLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336
Query: 362 AWAYRQISLLLRRPPGREAFPGDVFYLHSRL---LERSSKINKYFLEKKKIFNKNNGTLT 418
A A R+IS L PG E +P YL S+L ER+ ++ + + G+++
Sbjct: 337 AEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRVVTLGSDYRV------GSVS 387
Query: 419 AFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKI 478
+ GD + + N + + LD +L + PAIN S S A +
Sbjct: 388 VIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWW 447
Query: 479 VKKLSGD-------IRIMLAQYRELE 497
K + + +L + EL+
Sbjct: 448 HKNIDPEWKAMRDKAMALLQKESELQ 473
Score = 40.5 bits (95), Expect = 0.003
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 21/140 (15%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEI 641
+ + G+ V + + T G++ VV TG + +G L I + + P++ E
Sbjct: 40 IIRLEGDKAVIQV-YEETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIREK 98
Query: 642 NSKKKSPIHTLPP-------------KFSNQIFNNNIL----ETGIKVIDLLCPFLKGGK 684
+ T P K +++ +I+ ET I V ++ P G+
Sbjct: 99 TGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGE 158
Query: 685 IGLFGGAG---VGKTVNMME 701
I G + + + ++
Sbjct: 159 IVEIAEEGDYTIEEVIAKVK 178
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 364 bits (936), Expect = e-115
Identities = 86/365 (23%), Positives = 147/365 (40%), Gaps = 38/365 (10%)
Query: 582 VQQQIGENIVR---TIAFGNTNGIKRNTI---VVDTGKPILTPVGDCTLGRILNV--LGD 633
V + + T + ++ + V + G V GR+ V G+
Sbjct: 106 VVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGE 165
Query: 634 P--------IDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKI 685
+++ E+ P+ P ++ N TG++++D+L P GG
Sbjct: 166 YTVEEPVVVLEDGTELKMYHTWPVRRARPVQ-RKLDPNTPFLTGMRILDVLFPVAMGGTA 224
Query: 686 GLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMK-------ESNV 738
+ G G GK+V L + + V++G GER E D E +
Sbjct: 225 AIPGPFGSGKSVTQQSLAKW---SNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPL 281
Query: 739 LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAML 798
+ + LI N P R G++IAE FR+ G V L D+ R+ A E+S+ L
Sbjct: 282 MHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRL 341
Query: 799 GRTPSAVGYQPTLAEEMGKLQERISST-----KNGTITSVQAIYVPADDLTDPSPSTTFT 853
P+ GY P LA + ER + G +T V A+ P D+++P +T
Sbjct: 342 EEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLR 401
Query: 854 HLDSTIVLSRQIAELGIYPAIDPLESYSK---QLDPY---IVGEEHYKVANEVKFYLQKY 907
+ + L +A +PAI+ SYS LDP+ V E++ ++ + + LQ+
Sbjct: 402 IVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQRE 461
Query: 908 KELKD 912
L++
Sbjct: 462 AGLQE 466
Score = 139 bits (352), Expect = 1e-34
Identities = 78/332 (23%), Positives = 139/332 (41%), Gaps = 39/332 (11%)
Query: 192 IPVGFELLGRIVN--SKGEFIDNKKKFLIKNRETVE-------KIAPGIMDRESVNEPLL 242
I V ++ GR+ GE+ + ++++ ++ + A + + N P L
Sbjct: 147 ILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRARPVQRKLDPNTPFL 206
Query: 243 TGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLIN 302
TG++ +D + P+ G I G +GK+ ++ N +V+ +YV G++ + + +
Sbjct: 207 TGMRILDVLFPVAMGGTAAIPGPFGSGKSVT-QQSLAKWSNADVV-VYVGSGERGNEMTD 264
Query: 303 VINKLKYYNC-------MDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIY 355
V+ + M TV++A T+ A + S Y G TI EYFRD G ++
Sbjct: 265 VLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMA 324
Query: 356 DDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRL---LERSSKINKYFLEKKKIFNK 412
D ++ A A R+IS L P E +P YL +RL ER+ K+
Sbjct: 325 DSTSRWAEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAGKV--------ITLGG 373
Query: 413 NNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGG 472
G +T + GD++ + + + I LD +L + PAIN S S
Sbjct: 374 EEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTS 433
Query: 473 AAQYKIVKKLSGD-------IRIMLAQYRELE 497
A + ++ D I +L + L+
Sbjct: 434 ALDPWYRENVAEDYPELRDAISELLQREAGLQ 465
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 304 bits (780), Expect = 3e-94
Identities = 84/346 (24%), Positives = 149/346 (43%), Gaps = 18/346 (5%)
Query: 585 QIGENIVRTIAFGNTNGIKR-NTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINS 643
++ E F T G+ T V V LGR N +G PID I
Sbjct: 49 EVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITP 108
Query: 644 KKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELI 703
+K+ PI LP + ++TGI ID++ ++G K+ +F G+G+ ++
Sbjct: 109 EKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIA 168
Query: 704 RNIAI----------EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPS 753
R + E VF +G RE + F E + + L + L + ++P+
Sbjct: 169 RQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228
Query: 754 GNRLRVALTGLSIAEEFR-NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLA 812
R+ L++AE VL+ + ++ ++ A E+ A P GY +
Sbjct: 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMY 288
Query: 813 EEMGKLQER--ISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGI 870
++ + ER + K G++T + + +P DD T P P T + I LSR++ GI
Sbjct: 289 TDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGI 348
Query: 871 YPAIDPLESYSKQLDPYI----VGEEHYKVANEVKFYLQKYKELKD 912
YP IDPL S S+ ++ + E+H +V++++ +++
Sbjct: 349 YPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRK 394
Score = 209 bits (535), Expect = 2e-59
Identities = 90/421 (21%), Positives = 155/421 (36%), Gaps = 43/421 (10%)
Query: 139 NIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNL-TQGQKCFCTEKIFEIPVGFE 197
+IK V GQ+ + E A Q F ++ L E + + V E
Sbjct: 34 DIKDGTGRVRGGQVIEVSE-EYAVIQVF-----EETTGLDLATTSVSLVEDVARLGVSKE 87
Query: 198 LLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKG 257
+LGR N G+ ID + R + + + R + + TGI +ID M + +G
Sbjct: 88 MLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRG 147
Query: 258 QRELIIGDRQTGKTTIA-----------IDTIINQKNKNVICIYVCIGQKISSLINVINK 306
Q+ I IA + +K + ++ +G L I +
Sbjct: 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQE 207
Query: 307 LKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHAWAY 365
+ + +V+ A D E+ ++P T+ EY + L+I D+T ++ A
Sbjct: 208 FERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEAL 267
Query: 366 RQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIET 425
R+I PGR +PG ++ + + ER+ + G++T PI+
Sbjct: 268 REIGAAREEIPGRRGYPGYMYTDLATIYERAGVV-----------EGKKGSVTQIPILSM 316
Query: 426 LEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIVK 480
+ D T IP IT+GQI L L P I+ S+SR VG + K
Sbjct: 317 PDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHK 376
Query: 481 KLSGDIRIMLAQYRELES-----FSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIV 535
++S + A ++ ++ D L + + +N SI
Sbjct: 377 QVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRY---LQFADAFERFFINQGQQNRSIE 433
Query: 536 E 536
E
Sbjct: 434 E 434
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 237 bits (607), Expect = 8e-70
Identities = 92/327 (28%), Positives = 153/327 (46%), Gaps = 13/327 (3%)
Query: 595 AFGNTNGIKRNTIVVDTG-------KPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKS 647
GI V P+G LGR+L+ G P+D ++ +
Sbjct: 63 PLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETG 122
Query: 648 PIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIA 707
+ T P + ++L+TG++ I+ L +G ++GLF G+GVGK+V + + R
Sbjct: 123 ALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182
Query: 708 IEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIA 767
+ V +GER RE DF + + + +I + R++ A IA
Sbjct: 183 AD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIA 239
Query: 768 EEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQER--ISST 825
E+FR+ G+ VLL +D++ R+ +A E++ +G P+ GY P++ ++ L ER
Sbjct: 240 EDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIH 299
Query: 826 KNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLD 885
G+IT+ + DD DP + LD IVLSR++AE G YPAID S S+ +
Sbjct: 300 GGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAM- 358
Query: 886 PYIVGEEHYKVANEVKFYLQKYKELKD 912
++ E+HY K L ++ +D
Sbjct: 359 TALITEQHYARVRLFKQLLSSFQRNRD 385
Score = 179 bits (457), Expect = 3e-49
Identities = 77/323 (23%), Positives = 141/323 (43%), Gaps = 21/323 (6%)
Query: 179 QGQKCFCTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVN 238
+ + ++P+G LLGR+++ G+ +D + + R +
Sbjct: 79 RNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIE 138
Query: 239 EPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTT----IAIDTIINQKNKNVICIYVCIG 294
L TG+++I++++ +G+GQR + GK+ +A T + + V+ + IG
Sbjct: 139 HVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT---RADVIVVGL---IG 192
Query: 295 QKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
++ + + I + + +VV+AA A S + I E FRD GQ L+I
Sbjct: 193 ERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLI 252
Query: 355 YDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNN 414
D LT++A A R+I+L + PP + +P VF L+ER+
Sbjct: 253 MDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGN-----------GIHGG 301
Query: 415 GTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAA 474
G++TAF + T D I + +I DG I L L + + PAI++ S+SR A
Sbjct: 302 GSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTAL 361
Query: 475 QYKIVKKLSGDIRIMLAQYRELE 497
+ + +L+ ++
Sbjct: 362 ITEQHYARVRLFKQLLSSFQRNR 384
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 230 bits (589), Expect = 2e-68
Identities = 88/296 (29%), Positives = 150/296 (50%), Gaps = 6/296 (2%)
Query: 618 PVGDCTLGRILNVLGDPIDNKGEI-NSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLL 676
VGD LGR+++ +G P+++ + ++ PP + + G++ ID L
Sbjct: 6 RVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGL 65
Query: 677 CPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKES 736
G +IG+F G+GVGK+ + + + + V +GER RE N+F + +S
Sbjct: 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQS 122
Query: 737 NVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSA 796
L K L+ + P+ R++ A T +IAE FR+ GK+VLL +D++ R+ A +V
Sbjct: 123 T-LSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGL 181
Query: 797 MLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLD 856
G G+ P++ + KL ER G+IT++ + + +D++ DP + LD
Sbjct: 182 ASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILD 241
Query: 857 STIVLSRQIAELGIYPAIDPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKD 912
IVL+R++AE +PAID S S+ + +V EH + A E K + YK +
Sbjct: 242 GHIVLTRELAEENHFPAIDIGLSASR-VMHNVVTSEHLRAAAECKKLIATYKNPEL 296
Score = 178 bits (454), Expect = 8e-50
Identities = 85/309 (27%), Positives = 149/309 (48%), Gaps = 17/309 (5%)
Query: 190 FEIPVGFELLGRIVNSKGEFIDNKKKF-LIKNRETVEKIAPGIMDRESVNEPLLTGIKSI 248
+I VG LLGR+++ G +++ + ++ P + R+ +++P + G+++I
Sbjct: 3 HKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAI 62
Query: 249 DSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLK 308
D ++ G GQR I GK+T+ + I N + ++I + + IG++ + + L
Sbjct: 63 DGLLTCGIGQRIGIFAGSGVGKSTL-LGMICNGASADIIVLAL-IGERGREVNEFLALLP 120
Query: 309 YYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQI 368
+ + V+V T+ A E+ + +T TI EYFRD G++ L++ D +T++A A R +
Sbjct: 121 Q-STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDV 179
Query: 369 SLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEG 428
L P R FP VF +LLER+ G++TA +
Sbjct: 180 GLASGEPDVRGGFPPSVFSSLPKLLERAG-------------PAPKGSITAIYTVLLESD 226
Query: 429 DVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRI 488
+V I V SI DG I L L N+ PAI++GLS SRV + + + +
Sbjct: 227 NVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKK 286
Query: 489 MLAQYRELE 497
++A Y+ E
Sbjct: 287 LIATYKNPE 295
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 234 bits (598), Expect = 3e-68
Identities = 75/328 (22%), Positives = 148/328 (45%), Gaps = 12/328 (3%)
Query: 596 FGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPK 655
F T G+ ++ V+ TG+ + P LGRIL+ G+P D I + I+
Sbjct: 66 FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 656 FSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKG--- 712
++ + ++TGI ID ++G K+ +F +G+ +++ R ++
Sbjct: 126 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAF 185
Query: 713 CSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR- 771
VF +G + E F + +++ L++ + ++P+ R+ L+ AE
Sbjct: 186 AVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAY 245
Query: 772 NSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQER--ISSTKNGT 829
G VL+ + +I + A ++ A P GY + ++ L ER I G+
Sbjct: 246 EHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKGAKGS 305
Query: 830 ITSVQAIYVPADDLTDPSPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSKQLDPYIV 889
+T + + +P DD+T P P + + IV++R++ GIYP I+ L S S+ L +
Sbjct: 306 VTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSR-LMNSGI 364
Query: 890 GE-----EHYKVANEVKFYLQKYKELKD 912
G +H V++++ + ++L+
Sbjct: 365 GAGKTREDHKAVSDQMYAGYAEGRDLRG 392
Score = 218 bits (557), Expect = 1e-62
Identities = 99/441 (22%), Positives = 169/441 (38%), Gaps = 38/441 (8%)
Query: 139 NIKFANNTVLSGQINGTTGYEEAAAQGFVAVLIDDLKNLTQGQKCFCTEKIFEIPVGFEL 198
NIK + TV GQ+ ++ + Q F + L + T + ++P +L
Sbjct: 40 NIKMGDGTVRRGQVLDSSA-DIVVVQVF-----EGTGGLDKDCGVIFTGETLKLPASVDL 93
Query: 199 LGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQ 258
LGRI++ GE D + + + A R + + TGI +ID + +GQ
Sbjct: 94 LGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQ 153
Query: 259 RELIIGDRQTGKTT----IAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMD 314
+ I IA + ++ +G ++ + ++
Sbjct: 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALE 213
Query: 315 YTVVVAATAADSAAEQYISPYTGCTIGEYFR-DLGQDCLIIYDDLTKHAWAYRQISLLLR 373
VV A D A E+ ++P T EY + G L+I D+T +A A RQ+
Sbjct: 214 RAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARN 273
Query: 374 RPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSF 433
PGR +PG ++ + L ER+ + G++T PI+ D+T
Sbjct: 274 EVPGRRGYPGYMYTDLATLYERAGIV-----------KGAKGSVTQIPILSMPGDDITHP 322
Query: 434 IPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSR-----VGGAAQYKIVKKLSGDIRI 488
IP IT+GQI + L P INV S+SR +G + K +S +
Sbjct: 323 IPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYA 382
Query: 489 MLAQYRELES-----FSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVE----LII 539
A+ R+L + S+ D K + ++Q +EN +I +
Sbjct: 383 GYAEGRDLRGLVAIVGKEALSERDT--KFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQ 440
Query: 540 ILLIIKNRFFFKIPIKQIELF 560
IL + +I K I+ +
Sbjct: 441 ILTHLPENQLGRIDNKYIQKY 461
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 199 bits (508), Expect = 2e-54
Identities = 71/146 (48%), Positives = 81/146 (55%), Gaps = 24/146 (16%)
Query: 53 TGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGL 112
GPRYCPSIEDKI KFP+ + HQIFLEPEG + E+Y NGLSTSL E Q ++ + I GL
Sbjct: 299 IGPRYCPSIEDKIVKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGL 358
Query: 113 NYSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA---- 168
+IR AY IEYD P L TL K +G NGTTGYEEAA QG VA
Sbjct: 359 ENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINA 418
Query: 169 --------------------VLIDDL 174
V+IDDL
Sbjct: 419 ALRAFGKEPIYLRRDESYIGVMIDDL 444
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 199 bits (509), Expect = 3e-54
Identities = 70/146 (47%), Positives = 88/146 (60%), Gaps = 24/146 (16%)
Query: 53 TGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGL 112
GPRYCPSIEDK+ +F + HQIFLEPEG S E+Y NG+STSL + Q ++++ + G+
Sbjct: 294 VGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGM 353
Query: 113 NYSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA---- 168
+ I+R Y IEYD+FDPR L TL KF +GQINGTTGYEEAAAQG +A
Sbjct: 354 ENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNA 413
Query: 169 --------------------VLIDDL 174
VL+DDL
Sbjct: 414 ARLSADKEGWAPARSQAYLGVLVDDL 439
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 198 bits (507), Expect = 3e-54
Identities = 67/146 (45%), Positives = 85/146 (58%), Gaps = 24/146 (16%)
Query: 53 TGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGL 112
GPRYCPSIEDKI +FP+ +H IFLEPEG + E+Y+NG STSL + Q ++ I GL
Sbjct: 288 VGPRYCPSIEDKISRFPDKSSHHIFLEPEGTDTVEMYVNGFSTSLPEDIQIAGLRSIPGL 347
Query: 113 NYSSIIRFAYNIEYDYFDPRCLNQTLNIKFANNTVLSGQINGTTGYEEAAAQGFVA---- 168
+ +IR Y IEYD+F P + T+ + N +GQINGT+GYEEAAAQG +A
Sbjct: 348 EEAKMIRPGYAIEYDFFHPWQIRSTMETRPVENLFFAGQINGTSGYEEAAAQGLMAGINA 407
Query: 169 --------------------VLIDDL 174
VLIDDL
Sbjct: 408 VRKILGKELIVLGRDQAYIGVLIDDL 433
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase
TRMFO; tRNA methyltransferase FAD folate, FAD,
flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus
thermophilus} PDB: 3g5q_A* 3g5r_A*
Length = 443
Score = 134 bits (338), Expect = 1e-33
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 42 ENSLLNKTFLITGPRYCPSIEDKIYKFPNTKNHQIFLEPEGYYSRELYLNGLSTSLSLEN 101
E + L+ GP + + + L E R L G T L
Sbjct: 228 ELARRGYQTLLFGP--MKPVGLVDPRTGKEPFAVVQLRQEDKAGRMWSLVGFQTGLKWPE 285
Query: 102 QKKLIKKITGLNYSSIIRFAYNIEYDYFDP-RCLNQTLNIKFANNTVLSGQINGTTGYEE 160
QK+LI+ I GL + I+R+ Y + R L +TL + A +G + G GY E
Sbjct: 286 QKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGETLEFREAEGLYAAGVLAGVEGYLE 345
Query: 161 AAAQGFVA 168
+AA GF+A
Sbjct: 346 SAATGFLA 353
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.2 bits (189), Expect = 2e-14
Identities = 60/400 (15%), Positives = 121/400 (30%), Gaps = 88/400 (22%)
Query: 540 ILLIIKNRFFFKIPIKQIELFEINIIK---YFRIINLKNNIS-----INKVQQQIGENIV 591
IL + ++ F K ++ +I+ II K+ +S + + E +V
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMV 79
Query: 592 RTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHT 651
+ F V+ +L + I P ++ ++
Sbjct: 80 Q--KF------------VEE---VLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYN 121
Query: 652 LPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHK 711
F+ +N + L+ +K+ L + + G G GKT +++ + ++ K
Sbjct: 122 DNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 712 -GCSVF-IGVGERSREG------NDFYHEMKESNVLDKVSLIYGQMNEPSG-NRLRVALT 762
+F + + + +++ + S N + ++ L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP----NWTSRSDHSSNIKLRIHSIQAELR 235
Query: 763 GLSIAEEFRNSGKDVLLFIDNIYR------F-----TLAGTEVSAMLGRTPSAVGYQPTL 811
L ++ + N LL + N+ F L T + +A +L
Sbjct: 236 RLLKSKPYENC----LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 812 AEEMGKLQERISSTKNGTITSVQAIYV--PADDLTDPSPSTTFTHLDSTIVLSRQIAEL- 868
L S+ Y+ DL P T + LS IAE
Sbjct: 292 DHHSMTLTPDEV-------KSLLLKYLDCRPQDL----PREVLTT--NPRRLS-IIAESI 337
Query: 869 --GI-------YPAIDPL----ESYSKQLDPYIVGEEHYK 895
G+ + D L ES L+P + +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFD 376
Score = 66.4 bits (161), Expect = 3e-11
Identities = 89/631 (14%), Positives = 205/631 (32%), Gaps = 183/631 (29%)
Query: 30 KLLESISRQPE------LENSL-LNKTFLITGPRY-C--PSIEDKIYKFPNTKNH---QI 76
+L ++ + E +E L +N FL++ + PS+ ++Y + + Q+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 77 FLEPEGYYSRELYLNGLSTSL-SLENQKKLIKKITGL--------------NYSSIIRFA 121
F + SR L +L L K ++ I G+ +Y +
Sbjct: 126 F--AKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 122 YNIEY----DYFDPRCL---NQTLNIKFANN--TVLSGQINGTTGYEEA--------AAQ 164
+ I + + P + Q L + N + N ++
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 165 GFVAVLI--DDLKNLTQGQKCFCTEKIFEIPVGFELLGRI-VNSKGEFIDNKKKFLIKNR 221
+ L+ +++N K + F L +I + ++ + + +
Sbjct: 242 PYENCLLVLLNVQN----------AKAWN---AFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 222 ETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQ 281
+++ + + E LL + +P R+ T
Sbjct: 289 ISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLP------------REVLTT---------- 325
Query: 282 KNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIG 341
N + I I + I + + K+ NC T ++ ++ +Y + ++
Sbjct: 326 -NPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV- 380
Query: 342 EYFRD--------LG--------QDCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDV 385
F L D +++ + L K+ SL+ ++P
Sbjct: 381 --FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-------SLVEKQPKES------T 425
Query: 386 FYLHSRLLERSSKI-NKYFLEKKKIFNKNNGTLTAFPIIETLEGDVTSFIPTNVISITDG 444
+ S LE K+ N+Y L + + + I +T + D IP + D
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIV--------DHYNIPKTFDSD--DLIPPYL----DQ 471
Query: 445 QIFLDTNLFNSNYRPAINVGLSVSRVGGAAQYKIVKKLSGDIRIMLAQYR-ELESFSKFS 503
+ ++ +G + + + + + + D R + + R + +++
Sbjct: 472 YFY--------SH-----IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 504 SDLDIVTKTQLYNGEKISLLMKQKPH--ENYSIVELIIILLIIKNRFFFKIPIKQIELFE 561
S L+ + + + Y KP+ +N E ++ ++ F KI E
Sbjct: 519 SILNTLQQLKFY-----------KPYICDNDPKYERLVNAIL---DFLPKI--------E 556
Query: 562 INII--KYFRIINL----KNNISINKVQQQI 586
N+I KY ++ + ++ + +Q+
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 48.3 bits (114), Expect = 1e-05
Identities = 89/615 (14%), Positives = 173/615 (28%), Gaps = 207/615 (33%)
Query: 361 HAWAYRQISLLLRRPPGREAFPGDVF-YLHSRLLERSSKINKYFLEKKKIFNKNNGTLTA 419
+ + I R+P ++ RL + KY + + + + K
Sbjct: 91 YKFLMSPIKTEQRQPSMMT----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLK------- 139
Query: 420 FPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGL--------SVSRVG 471
+ + L L RPA NV + + +
Sbjct: 140 --LRQALL-----------------------EL-----RPAKNVLIDGVLGSGKTWVALD 169
Query: 472 GAAQYKIVKKLSGDIR-IMLAQYRE----LESFSKFSSDLDIVTKTQLYNGEKISL---- 522
YK+ K+ I + L LE K +D ++ + I L
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 523 -------LMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIELFEINIIKYF----RII 571
L+K KP+EN LL++ N + F +I+
Sbjct: 230 IQAELRRLLKSKPYEN--------CLLVLLN------------VQNAKAWNAFNLSCKIL 269
Query: 572 NLKNNISINKVQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKPILTPVGDCTLGRILNVL 631
+ + + + I +D LTP D +L L
Sbjct: 270 LTTRFKQVT--------DFL--------SAATTTHISLDHHSMTLTP--DEVKSLLLKYL 311
Query: 632 GDPIDN-KGEINSKKKSP---------IHTLPPKFSN-QIFNNNILETGIKV-IDLLCP- 678
+ E+ +P I + N + N + L T I+ +++L P
Sbjct: 312 DCRPQDLPREV--LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 679 -----------FLKGGKI-----GLFGGAGVGKTVNMM--ELIRNIAIEHKGCSVFIGVG 720
F I L + V ++ +L + +E + I +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI- 428
Query: 721 ERSREGNDFYHEMKESN---------VLDKVSLIYG-QMNEPSGNRLR------VA--LT 762
Y E+K ++D ++ ++ L + L
Sbjct: 429 ------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 763 GLSIAEE---FRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKL- 818
+ E FR +F+D +RF + + +A ++ + +L
Sbjct: 483 NIEHPERMTLFRM------VFLD--FRF------LEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 819 --QERISSTKNGTITSVQAIYVPADDLTD--PSPSTTFTHLDSTIVLSRQIA----ELGI 870
+ I N + + + + D P T +L +IA + I
Sbjct: 529 FYKPYI--CDNDPKYE-RLV----NAILDFLPKIEENLICSKYTDLL--RIALMAEDEAI 579
Query: 871 YPAIDPLESYSKQLD 885
+ E++ KQ+
Sbjct: 580 F-----EEAH-KQVQ 588
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION
transport, hydrolase; NMR {Bacillus SP}
Length = 72
Score = 64.3 bits (157), Expect = 3e-13
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
+ AA+I +GL ++G GIG G++ + +E I+RQPEL L F+
Sbjct: 5 VLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVA 53
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport;
NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A
1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Length = 79
Score = 64.9 bits (158), Expect = 3e-13
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
AA++MMGLA+IG IG GILGGK LE +RQP+L L + F++ G
Sbjct: 10 YMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMG 58
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP
synthesis, transmembran CF(0), membrane, transport,
C-ring rotor; HET: FME DPV; 2.50A {Bacillus
pseudofirmus OF4}
Length = 69
Score = 60.6 bits (147), Expect = 8e-12
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
A+I GLA++ I I+ +E +RQPEL +L F+
Sbjct: 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVP 51
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP
synthase rotor, ION (PROT translocation; HET: FME CVM;
1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A*
2wie_A* 2w5j_A
Length = 82
Score = 58.1 bits (141), Expect = 8e-11
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFL 51
+ AA++ +G+ SIG G+G G G+ +E I+RQPE E + L
Sbjct: 11 VIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLL 56
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase
rotor, sodium-motive force, cell inner membrane, CF(0),
membrane, transport; HET: F09; 2.35A {Ilyobacter
tartaricus} PDB: 1yce_A*
Length = 89
Score = 47.0 bits (112), Expect = 7e-07
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 6 LFAASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFL 51
A M +A IG G+G G GK +ES++RQPE + +++ L
Sbjct: 15 AVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVL 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 1e-06
Identities = 91/559 (16%), Positives = 164/559 (29%), Gaps = 216/559 (38%)
Query: 26 ILGGK-------LLESISRQPELENSLLNKTFL----ITGPRYCPSIEDKIYKFPNTKNH 74
L G L + ++ L K ++ + + +++ N
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 75 QIFL------EPEGYYS--RELY-----------------LNGLSTSLSLENQKKLIKKI 109
Q+ + Y+ R+LY L+ L + + +K+ +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL--DAEKVFTQ- 211
Query: 110 TGLNYSSIIRFAYNIE----YDYFD------PR-CLNQTLNIKFANNTV------LSGQI 152
GLN I+ + N DY P + Q + + L +
Sbjct: 212 -GLN---ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 153 NGTTGYEEAAAQGFV-AVLIDDLKNLTQGQKCFCTEKIFEIPVGFELLGRIVNSKGEFID 211
G TG+ +QG V AV I +S F
Sbjct: 268 KGATGH----SQGLVTAVAI-----------------------------AETDSWESFFV 294
Query: 212 NKKK-----FLIKNR--ET--VEKIAPGIM-DRESVNEPLLTGIKSIDSMIPIGKGQREL 261
+ +K F I R E + P I+ D NE G+ S M+ I
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE----GVPS--PMLSI------- 341
Query: 262 IIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKIS-SLIN-----VI----NKLKYYN 311
+ T + +N+ N ++ G+++ SL+N V+ L
Sbjct: 342 ------SNLTQEQVQDYVNKTNS-----HLPAGKQVEISLVNGAKNLVVSGPPQSL---- 386
Query: 312 CMDYTVVVA--ATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQIS 369
Y + + A S +Q P++
Sbjct: 387 ---YGLNLTLRKAKAPSGLDQSRIPFSE-------------------------------- 411
Query: 370 LLLRRPPGREAF-----PGDVFYLHSRLLERS-SKINKYFLEKKKIFNKNNGTLTAFPII 423
R+ F P F HS LL + INK ++ FN + P+
Sbjct: 412 ---RKLKFSNRFLPVASP---F--HSHLLVPASDLINKDLVKNNVSFNAK--DI-QIPVY 460
Query: 424 ETLEG-DVTSFIPTNVISITDGQIFLD------TNLFNSNYRPAINVG-LSVSRVGGAAQ 475
+T +G D+ + I D I T F + + ++ G S +G
Sbjct: 461 DTFDGSDLRVLSGSISERIVD-CIIRLPVKWETTTQFKATH--ILDFGPGGASGLG---- 513
Query: 476 YKIVKKL---SGDIRIMLA 491
+ + +G +R+++A
Sbjct: 514 -VLTHRNKDGTG-VRVIVA 530
Score = 48.1 bits (114), Expect = 1e-05
Identities = 50/273 (18%), Positives = 78/273 (28%), Gaps = 83/273 (30%)
Query: 60 SIEDKIYKFPNTKN-HQIFLEPEGYYSRELYLNGLSTSLSLENQKKLIKKITGLNYSSII 118
SI D + P H F +G RE Y + ++ + K K +N S
Sbjct: 1660 SILDIVINNPVNLTIH--FGGEKGKRIRENYS-AMIFETIVDGKLKTEKIFKEINEHST- 1715
Query: 119 RFAYNIEYDYFDPR-CLNQTLNIKFANNTVLSGQ--INGTTGYEEAAAQGFVAVLIDDLK 175
Y + + L+ T T Q + AA + DLK
Sbjct: 1716 ------SYTFRSEKGLLSAT------QFT----QPAL-TLMEK--AAFE--------DLK 1748
Query: 176 N--LTQGQKCF------------CTEKIFEIPVGFELLGRIVNSKGEFIDNKKKFLIKNR 221
+ L F + E L +V +G + R
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMS----IESLVEVVFYRGMTMQVAVPRDELGR 1804
Query: 222 ETVEKIA--PGIMDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKT-TIAIDTI 278
IA PG + E L ++ + ++TG I
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVG----------------KRTGWLVEIV---- 1844
Query: 279 INQKNKNV-ICIYVCIGQK--ISSLINVINKLK 308
N NV YV G + ++ NV+N +K
Sbjct: 1845 ----NYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Score = 40.8 bits (95), Expect = 0.002
Identities = 42/292 (14%), Positives = 95/292 (32%), Gaps = 100/292 (34%)
Query: 354 IYDDLTKHAWAYRQISLL--LRRPPGREA--FPGDVFYLHSRLLERSSKINKYFLEKKKI 409
+++ H S+L + P F G E+ +I + + I
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG----------EKGKRIRENYS--AMI 1692
Query: 410 F-NKNNGTLTAFPIIETLEGDVTSFI---PTNVISITDGQIFLDTNLFNSNYRPAINVGL 465
F +G L I + + TS+ ++S T +PA+
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT------------QFTQPAL---T 1737
Query: 466 SVSRVGGAAQYKIVKKLSGDIRI--MLA-----QYREL----ESFSKFSSDLDIVTKTQL 514
+ + A ++ +K G I A +Y L + S S +++V
Sbjct: 1738 LMEK----AAFEDLKS-KGLIPADATFAGHSLGEYAALASLADVMS-IESLVEVVF---- 1787
Query: 515 YNGEKISLLMKQKPH--ENYSI----------------VELII--------ILLIIKNRF 548
Y G + + + + NY + ++ ++ L+ I N
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-- 1845
Query: 549 FFKIPIKQI---------ELFEINIIKYFRI-----INLKNNISINKVQQQI 586
+ + +Q + N++ + ++ I L+ ++S+ +V+ +
Sbjct: 1846 -YNVENQQYVAAGDLRALDTV-TNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 39.6 bits (92), Expect = 0.005
Identities = 62/327 (18%), Positives = 95/327 (29%), Gaps = 104/327 (31%)
Query: 1 MGNIPLFAASIMMGLASIGTGIGFGILGGKLL-ESISRQPELENSL--LNKTFLITGPRY 57
+G P S + G TG G++ + E+ S + + + F I G R
Sbjct: 256 LGFTPGELRSYLKGA----TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-GVR- 309
Query: 58 CPSIEDKIYKFPNT----KNHQIFLEP-EGYYSRELYLNGLSTSLSLENQKKLIKKITGL 112
E +PNT + LE EG S L ++ L+ Q+++ +
Sbjct: 310 --CYEA----YPNTSLPPSILEDSLENNEGVPSPMLSISNLT-------QEQVQDYVNKT 356
Query: 113 NYSSIIRFAYNIEYDYFDPRCLNQTLNIKFAN---NTVLSGQINGTTGYEEAAA-QGFVA 168
N P + + I N N V+SG + G
Sbjct: 357 NSHL--------------PA--GKQVEISLVNGAKNLVVSG---------PPQSLYGLNL 391
Query: 169 VLIDDLK---NLTQGQKCFCTEKI-----FEIPVG--F--ELLGRIVN------SKGEFI 210
L K L Q + F K+ F +PV F LL + K
Sbjct: 392 TL-RKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 211 DNKKKFLI--------KN-RETVEKIAPGIMD---RESVNEPLLT--------------- 243
N K I + R I+ I+D R V T
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
Query: 244 -GIKSIDSMIPIGKGQRELIIGDRQTG 269
G+ + G G R ++ G
Sbjct: 510 SGLGVLTHRNKDGTGVRVIVAGTLDIN 536
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP
phosphorylase (H+ transporting), ATP synthesis, F1FO
ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A
{Bos taurus}
Length = 72
Score = 38.2 bits (89), Expect = 6e-04
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 4 IPLFAASIMMGLASI---GTGIGFGILGGKLLESISRQPELENSLLNKTFL 51
I A I G A++ G+G G G + G L+ +R P L+ L + L
Sbjct: 1 IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAIL 51
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP
synthase, oligomycin, membr protein-antibiotic complex;
HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB:
2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Length = 76
Score = 38.2 bits (89), Expect = 8e-04
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 3 NIPLFAASIMMGLASI---GTGIGFGILGGKLLESISRQPELENSLLNKTFL 51
+ L A I G+++I G GIG I+ L+ +SR P +++++ L
Sbjct: 2 QLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAIL 53
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 40.3 bits (95), Expect = 0.002
Identities = 68/276 (24%), Positives = 99/276 (35%), Gaps = 79/276 (28%)
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIK-----VIDLLCPFLKG--GKIGLFGGAGV- 693
+ L P + + F LET K +IDL P KG G I V
Sbjct: 133 AVNDRVNFDNLTPDYPRERFI---LETDPKIYSTRLIDLFAPIGKGQRGMI-------VA 182
Query: 694 ----GKTVNMMELIRNIAIEHKGCSVFI-GVGERSREGNDFYHEMKESNVLDKVSLIYGQ 748
GKT + E+ IA H I + ER E D ++ES +I
Sbjct: 183 PPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTD----IRES-T--NAIVIAAP 235
Query: 749 MNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRT------P 802
+ P +++VA L +A+ DV++ +D++ R V G+ P
Sbjct: 236 FDMPPDKQVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLTGGVDP 295
Query: 803 SAVGYQPTL-------AEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHL 855
+A+ Y+P E G L TI A L + T + +
Sbjct: 296 AAL-YKPKRFFGAARNTREGGSL----------TII--------ATALVE-----TGSKM 331
Query: 856 DSTI------------VLSRQIAELGIYPAIDPLES 879
D I VLSRQ+A I+PAI+ L S
Sbjct: 332 DEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLS 367
Score = 39.5 bits (93), Expect = 0.004
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 248 IDSMIPIGKGQRELIIGDRQTGKTTI--AIDTIINQKNKNVICIYVCI 293
ID PIGKGQR +I+ + GKTTI I I + + + I I + I
Sbjct: 166 IDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLI 213
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 39.5 bits (93), Expect = 0.005
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 248 IDSMIPIGKGQRELIIGDRQTGKTTI--AIDTIINQKNKNVICIYVCI 293
+D PIG+GQR LI+ + GKT + I I + + + + + I
Sbjct: 165 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 212
Score = 36.8 bits (86), Expect = 0.031
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 642 NSKKKSPIHTLPPKFSNQIFNNNILETGIK--------VIDLLCPFLKG--GKIGLFGGA 691
N++ K L P +N +E G V+DL P +G G I
Sbjct: 129 NARNKILFENLTPLHANSRLR---MERGNGSTEDLTARVLDLASPIGRGQRGLI------ 179
Query: 692 GV-----GKTVNMMELIRNIAIEHKGCSVFI-GVGERSREGNDFYHEMKESNVLDKVSLI 745
V GKT+ + + ++IA H C + + + ER E + M+ V +V +
Sbjct: 180 -VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE----MQRL-VKGEV--V 231
Query: 746 YGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPS 803
+EP+ ++VA + A+ KDV++ +D+I R A V G+ +
Sbjct: 232 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 289
Score = 30.7 bits (70), Expect = 2.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 859 IVLSRQIAELGIYPAIDPLES 879
+ LSR+IAE ++PAID S
Sbjct: 346 LHLSRKIAEKRVFPAIDYNRS 366
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 37.0 bits (85), Expect = 0.020
Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 666 LETGIKVIDLLCPFLKGGKIGLFGGA-GVGKTVNMMELIRNIA--------IEHKGCSVF 716
+D + P + G +G G GK++ ++L IA E V
Sbjct: 13 FAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVI 72
Query: 717 IGVGERSREG--NDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSG 774
E + + + ++ ++ G + +P L + R +
Sbjct: 73 YLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAE 132
Query: 775 KDVLLFIDNIYRFTLAGTEVSA 796
L+ +D + RF E ++
Sbjct: 133 GRRLMVLDTLRRFH-IEEENAS 153
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 35.6 bits (82), Expect = 0.083
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 685 IGLFGGAGVGKTVNMMELIRNIAI---EHKGCSVFIGVGERSREGNDFYHEMKESNVLDK 741
+ ++G AG GK+V E +R+ ++ G ++ +G++ + G MK N+ +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG----LLMKLQNLCMR 205
Query: 742 VSLIYGQMNEPSGN--RLRVALTGLSIAEEFRNSGKDVLLFIDNIYR 786
+ N + L L + + R LL +D+++
Sbjct: 206 LDQEESFSQRLPLNIEEAKDRLRVLMLRKHPR-----SLLILDDVWD 247
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 32.2 bits (73), Expect = 0.68
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 231 IMDRESVNEPLLTGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQ-KNKNVI 287
IM + V + +GI D +I G +G L+ G TGKTT A I +
Sbjct: 3 IMAYQPV-RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP 61
Query: 288 CIYVCIGQKISSLINVINKL 307
++V + ++ L +
Sbjct: 62 GVFVTLEERARDLRREMASF 81
Score = 30.6 bits (69), Expect = 1.9
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 666 LETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERS 723
+++GI D L F +G + L GG G GKT + I A E+ VF+ + ER+
Sbjct: 12 VKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA 71
Query: 724 RE 725
R+
Sbjct: 72 RD 73
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.4 bits (71), Expect = 1.3
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 201 RIVNSKGEFIDNKKKFLI--KNRETVEKIAPGIMDRESVNEPLLTGIKSIDSMIPIG--K 256
I+ +G + + + + + + S N + +G+ +D M G K
Sbjct: 221 EILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFK 280
Query: 257 GQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYV 291
L G TGKT + + N I
Sbjct: 281 DSIILATGATGTGKTLLVSRFVENACANKERAILF 315
Score = 29.5 bits (66), Expect = 5.3
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 228 APGIMDRESVNEPLLTGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQ-KNK 284
+P + T I+ D + G G+ L+ G TGKT +I + N
Sbjct: 8 SPNNNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF 67
Query: 285 NVICIYVCIGQKISSLI 301
+ ++V + +I
Sbjct: 68 DEPGVFVTFEETPQDII 84
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring,
membrane rotor, sodium transporter, H ION transport,
hydrolase, transmembrane; HET: LHG UMQ; 2.1A
{Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Length = 156
Score = 30.2 bits (68), Expect = 1.5
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 1 MGNIPLFAASIMMGLASIGTGIGFGILGGKLLESISRQPEL 41
+ + AS+ + + +GI G + ++ ++++PE
Sbjct: 87 VQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEH 127
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 30.6 bits (69), Expect = 2.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717
+ + G G GK+V + EL +G + I
Sbjct: 56 LLVNGATGTGKSVLLRELAYTGL--LRGDRMVI 86
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 30.2 bits (69), Expect = 3.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 767 AEEFRNSGKDVLLFIDNIYRF 787
A + RN+G+ +LF+D ++RF
Sbjct: 98 ARQNRNAGRRTILFVDEVHRF 118
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase,
UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma
brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A*
2q0g_A*
Length = 353
Score = 30.2 bits (67), Expect = 3.4
Identities = 7/82 (8%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 499 FSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVELIIILLIIKNRFFFKIPIKQIE 558
+ SD+D V + + + + L + +I+ + ++++
Sbjct: 80 VHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSW-NVEEVR 138
Query: 559 LFEINIIKYFRIINLKNNISIN 580
+ +++ + +I+
Sbjct: 139 RTRVPVVRVKGGGAVDFDITAY 160
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 29.6 bits (67), Expect = 3.6
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 243 TGIKSIDSM----IPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYV 291
TGI D + IP +G + G+ TGKT ++ I CIYV
Sbjct: 7 TGILDFDKLIQGGIP--QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 29.7 bits (67), Expect = 4.2
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 243 TGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYV 291
TGI +D ++ G + L+ G TGKT + + N IYV
Sbjct: 7 TGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 28.8 bits (64), Expect = 5.4
Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 6/124 (4%)
Query: 684 KIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFY------HEMKESN 737
KI + G GVGKT + +++ + G +++ F + S+
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAM 797
+ G +A+ L A + ++ ID I + L + +
Sbjct: 62 KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121
Query: 798 LGRT 801
+ +
Sbjct: 122 VRQI 125
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 29.3 bits (65), Expect = 8.2
Identities = 33/234 (14%), Positives = 82/234 (35%), Gaps = 43/234 (18%)
Query: 687 LFGGAGVGKTVNMMELIRNIAIEHK-GCSVFIGVGERSREGNDFYHEMKESNVLDKVSLI 745
L G +G GKT ++ I++ G + V ++ M+ +
Sbjct: 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ------MTFLMEYE--------L 51
Query: 746 YGQMNEPSGNRLRVALTGLSIAEE-FRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSA 804
+ R +V + +A +++G F+ + L + ++
Sbjct: 52 AKTPDMGGMIRAQV-FSFSRLAWRVLQHTGGMSRPFLTSTGVQML----LRKLIEEHKQE 106
Query: 805 VGYQPTLAEEMG---KLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTFTHLDSTIVL 861
+++ G +++ ++ K + +D+ + S T + VL
Sbjct: 107 FKVYQKASDKSGFTAQVERMLTEFKRYCLE--------PEDIRRMAESGTASEYRGERVL 158
Query: 862 SRQIAELG-IYPAIDPLESYSKQL-DPYIVGEEHYKVANEVKFYLQKYKELKDT 913
S ++ +L +Y + K L D Y+ E++ + E ++ +++K
Sbjct: 159 SEKLHDLSILY------QQMEKSLADQYLHSEDYLTLLAE---HIPLAEDIKGA 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.395
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,949,017
Number of extensions: 891340
Number of successful extensions: 2276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2181
Number of HSP's successfully gapped: 88
Length of query: 915
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 813
Effective length of database: 3,853,851
Effective search space: 3133180863
Effective search space used: 3133180863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.8 bits)