RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy210
(915 letters)
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 350 bits (900), Expect = e-115
Identities = 186/275 (67%), Positives = 218/275 (79%), Gaps = 7/275 (2%)
Query: 615 ILTPVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVID 674
I PVG TLGRI+NV+G+PID +G I +K+ + IH P+F IL TGIKV+D
Sbjct: 1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60
Query: 675 LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMK 734
LL P+ KGGKIGLFGGAGVGKTV +MELI N+A H G SVF GVGER+REGND YHEM
Sbjct: 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 120
Query: 735 ESNV------LDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFR-NSGKDVLLFIDNIYRF 787
ES V KV+L+YGQMNEP G R RVALTGL++AE FR G+DVLLFIDNI+RF
Sbjct: 121 ESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 180
Query: 788 TLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQAIYVPADDLTDPS 847
T AG+EVSA+LGR PSAVGYQPTLA +MG +QERI++TK G+ITSVQAIYVPADDLTDP+
Sbjct: 181 TQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPA 240
Query: 848 PSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSK 882
P+TTF HLD+T VLSR IAELGIYPA+DPL+S S+
Sbjct: 241 PATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSR 275
Score = 318 bits (816), Expect = e-102
Identities = 71/288 (24%), Positives = 117/288 (40%), Gaps = 21/288 (7%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDS 250
IPVG E LGRI+N GE ID + K + AP ++ E L+TGIK +D
Sbjct: 2 RIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDL 61
Query: 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIIN-QKNKNVICIYVCIGQKISSLINVINKLK- 308
+ P KG + + G GKT + ++ I N K ++ +G++ ++ +++
Sbjct: 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE 121
Query: 309 -----YYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRD-LGQDCLIIYDDLTKHA 362
+ +V + + TG T+ EYFRD GQD L+ D++ +
Sbjct: 122 SGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFT 181
Query: 363 WAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPI 422
A ++S LL R P + + + ER I G++T+
Sbjct: 182 QAGSEVSALLGRIPSAVGYQPTLATDMGTMQER-------------ITTTKKGSITSVQA 228
Query: 423 IETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRV 470
I D+T P + D L + PA++ S SR+
Sbjct: 229 IYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 276
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 347 bits (893), Expect = e-114
Identities = 181/293 (61%), Positives = 223/293 (76%), Gaps = 17/293 (5%)
Query: 191 EIPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDS 250
++PVG ELLGR+V++ G ID K K R V APGI+ R SV EP+ TGIK++DS
Sbjct: 2 DVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDS 61
Query: 251 MIPIGKGQRELIIGDRQTGKTTIAIDTIINQK--------NKNVICIYVCIGQKISSLIN 302
++PIG+GQRELIIGDRQTGKT+IAIDTIINQK K + CIYV IGQK S++
Sbjct: 62 LVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQ 121
Query: 303 VINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHA 362
++ +L + M YT+VV+ATA+D+A QY++PY+GC++GEYFRD G+ LIIYDDL+K A
Sbjct: 122 LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 181
Query: 363 WAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPI 422
AYRQ+SLLLRRPPGREA+PGDVFYLHSRLLER++K+N F G+LTA P+
Sbjct: 182 VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF---------GGGSLTALPV 232
Query: 423 IETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ 475
IET GDV+++IPTNVISITDGQIFL+T LF RPAINVGLSVSRVG AAQ
Sbjct: 233 IETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQ 285
Score = 335 bits (861), Expect = e-109
Identities = 67/276 (24%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 618 PVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLC 677
PVG+ LGR+++ LG+ ID KG I SK + + P +I ++TGIK +D L
Sbjct: 4 PVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLV 63
Query: 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGC-------SVFIGVGERSREGNDFY 730
P +G + + G GKT ++ I N + G +++ +G++
Sbjct: 64 PIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLV 123
Query: 731 HEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLA 790
+ +++ + ++ ++ + + +G S+ E FR++GK L+ D++ + +A
Sbjct: 124 KRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVA 183
Query: 791 GTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKN----GTITSVQAIYVPADDLTDP 846
++S +L R P Y + +L ER + + G++T++ I A D++
Sbjct: 184 YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAY 243
Query: 847 SPSTTFTHLDSTIVLSRQIAELGIYPAIDPLESYSK 882
P+ + D I L ++ GI PAI+ S S+
Sbjct: 244 IPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 279
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 311 bits (799), Expect = e-100
Identities = 165/284 (58%), Positives = 207/284 (72%), Gaps = 9/284 (3%)
Query: 192 IPVGFELLGRIVNSKGEFIDNKKKFLIKNRETVEKIAPGIMDRESVNEPLLTGIKSIDSM 251
IPV LGR++N+ + ID + + +E APGIM R SV EPL TG+ +ID+M
Sbjct: 2 IPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 61
Query: 252 IPIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYN 311
IP+G+GQRELIIGDRQTGKT +A DTI+NQ+ +NVIC+YV IGQK SS+ V+ +
Sbjct: 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERG 121
Query: 312 CMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYRQISLL 371
M+YT+VVA TA A QY++PYTG + EYF + LIIYDDL+K A AYRQ+SLL
Sbjct: 122 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLL 181
Query: 372 LRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFNKNNGTLTAFPIIETLEGDVT 431
LRRPPGREA+PGDVFYLHSRLLER++K++ G++TA PI+ET GDV+
Sbjct: 182 LRRPPGREAYPGDVFYLHSRLLERAAKLS---------SLLGEGSMTALPIVETQAGDVS 232
Query: 432 SFIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVSRVGGAAQ 475
++IPTNVISITDGQIFL +LFN+ RPAINVG+SVSRVG AAQ
Sbjct: 233 AYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQ 276
Score = 291 bits (745), Expect = 3e-92
Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 5/269 (1%)
Query: 618 PVGDCTLGRILNVLGDPIDNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLC 677
PV + LGR++N L PID +GEI + + I + P ++ L+TG+ ID +
Sbjct: 3 PVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMI 62
Query: 678 PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESN 737
P +G + + G GKT + I N V++ +G+++ +E
Sbjct: 63 PVGRGQRELIIGDRQTGKTAVATDTILNQQ-GQNVICVYVAIGQKASSVAQVVTNFQERG 121
Query: 738 VLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAM 797
++ ++ + P+ + TG ++AE F + L+ D++ + A ++S +
Sbjct: 122 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLL 181
Query: 798 LGRTPSAVGYQPTLAEEMGKLQERISSTKN----GTITSVQAIYVPADDLTDPSPSTTFT 853
L R P Y + +L ER + + G++T++ + A D++ P+ +
Sbjct: 182 LRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVIS 241
Query: 854 HLDSTIVLSRQIAELGIYPAIDPLESYSK 882
D I LS + GI PAI+ S S+
Sbjct: 242 ITDGQIFLSADLFNAGIRPAINVGISVSR 270
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 201 bits (511), Expect = 7e-59
Identities = 47/279 (16%), Positives = 105/279 (37%), Gaps = 17/279 (6%)
Query: 636 DNKGEINSKKKSPIHTLPPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIGLFGGAGVGK 695
+N +++ + + + + +V+DL P +G + + GK
Sbjct: 6 ENLTPLHANSRLRMERGNG---------STEDLTARVLDLASPIGRGQRGLIVAPPKAGK 56
Query: 696 TVNMMELIRNIAIEHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGN 755
T+ + + ++IA H C + + + + E + + V + +EP+
Sbjct: 57 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEV------VASTFDEPASR 110
Query: 756 RLRVALTGLSIAEEFRNSGKDVLLFIDNIYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEM 815
++VA + A+ KDV++ +D+I R A V G+ + L
Sbjct: 111 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPK 170
Query: 816 GKLQERISSTKNGTITSVQAIYVPADDLTDPSPSTTF-THLDSTIVLSRQIAELGIYPAI 874
+ + G++T + + D F + + LSR+IAE ++PAI
Sbjct: 171 RFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI 230
Query: 875 DPLESYSKQLDPYIVGEEHYKVANEVKFYLQKYKELKDT 913
D S ++ + + +E + ++ + E+
Sbjct: 231 DYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDAM 268
Score = 185 bits (471), Expect = 3e-53
Identities = 42/270 (15%), Positives = 94/270 (34%), Gaps = 24/270 (8%)
Query: 232 MDRESVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIAIDTIINQK--NKNVICI 289
M+R + + +D PIG+GQR LI+ + GKT + + + + + + +
Sbjct: 19 MERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 77
Query: 290 YVCIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQ 349
+ I ++ + + +K VVA+T + A+ + + +
Sbjct: 78 VLLIDERPEEVTEMQRLVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 130
Query: 350 DCLIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKI 409
D +I+ D +T+ A AY + + + + R + +
Sbjct: 131 DVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNV---------- 179
Query: 410 FNKNNGTLTAFPIIETLEGDVTS-FIPTNVISITDGQIFLDTNLFNSNYRPAINVGLSVS 468
+ G+LT G I + ++ L + PAI+ S +
Sbjct: 180 --EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 237
Query: 469 RVGGAAQYKIVKKLSGDIRIMLAQYRELES 498
R + + +R ++ E+++
Sbjct: 238 RKEELLTTQEELQKMWILRKIIHPMGEIDA 267
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 131
Score = 93.4 bits (232), Expect = 5e-23
Identities = 29/93 (31%), Positives = 53/93 (56%)
Query: 477 KIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVE 536
K +KK++G +R+ LA YRELE+F++F SDLD T+ + G + ++KQ H+ + +
Sbjct: 2 KAMKKVAGTLRLDLAAYRELEAFAQFGSDLDKATQANVARGARTVEVLKQDLHQPIPVEK 61
Query: 537 LIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
++I+ + F IP++ + FE +
Sbjct: 62 QVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLD 94
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain
3 {Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 129
Score = 86.9 bits (215), Expect = 8e-21
Identities = 27/93 (29%), Positives = 56/93 (60%)
Query: 477 KIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVE 536
K +KK++G +++ LAQ+ ELE+F++F+SDLD T+ QL G+++ L+KQ ++ E
Sbjct: 2 KAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEE 61
Query: 537 LIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
++ + N + + + Q+ + + + Y +
Sbjct: 62 QVMTIYTGTNGYLDSLELDQVRKYLVELRTYVK 94
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
3 {Cow (Bos taurus) [TaxId: 9913]}
Length = 131
Score = 86.9 bits (215), Expect = 9e-21
Identities = 26/93 (27%), Positives = 53/93 (56%)
Query: 477 KIVKKLSGDIRIMLAQYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIVE 536
+ +K+++G +++ LAQYRE+ +F++F SDLD T+ L G +++ L+KQ + +I E
Sbjct: 2 RAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEE 61
Query: 537 LIIILLIIKNRFFFKIPIKQIELFEINIIKYFR 569
+ ++ + K+ +I FE + +
Sbjct: 62 QVAVIYAGVRGYLDKLEPSKITKFENAFLSHVI 94
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia
coli [TaxId: 562]}
Length = 79
Score = 64.6 bits (158), Expect = 1e-13
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 8 AASIMMGLASIGTGIGFGILGGKLLESISRQPELENSLLNKTFLITG 54
AA++MMGLA+IG IG GILGGK LE +RQP+L L + F++ G
Sbjct: 12 AAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMG 58
>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 82
Score = 53.5 bits (129), Expect = 1e-09
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKP 614
V +G++ VRTIA +T+G+ R V+DTG P
Sbjct: 50 VALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP 82
>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 72
Score = 52.7 bits (127), Expect = 1e-09
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKP 614
V Q +GE+ VRTIA T G+ R V+D+G P
Sbjct: 40 VAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAP 72
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 79
Score = 52.0 bits (125), Expect = 4e-09
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 582 VQQQIGENIVRTIAFGNTNGIKRNTIVVDTGKP 614
VQQ +G N VR +A T+G+ R V+DTG P
Sbjct: 47 VQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAP 79
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 118
Score = 51.6 bits (124), Expect = 1e-08
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 884 LDPYIVGEEHYKVANEVKFYLQKYKELKD 912
+DP IVG EHY VA V+ LQ YK L+D
Sbjct: 1 MDPNIVGSEHYDVARGVQKILQDYKSLQD 29
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 114
Score = 50.4 bits (121), Expect = 3e-08
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 888 IVGEEHYKVANEVKFYLQKYKELKDTST 915
IVGEEHY+VA +V+ L++YKEL+D
Sbjct: 2 IVGEEHYQVARKVQQTLERYKELQDIIA 29
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 108
Score = 49.7 bits (119), Expect = 4e-08
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 888 IVGEEHYKVANEVKFYLQKYKELKDTS 914
IVGEEHY++A VK LQ+YKEL+D
Sbjct: 2 IVGEEHYEIAQRVKETLQRYKELQDII 28
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 34.7 bits (79), Expect = 0.015
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 256 KGQRELIIGDRQTGKTTIAIDTIIN--QKNKNVICIYVCIGQKISSLINVINKLKYYNCM 313
+GQ ++I+G +GK+T + + + I + SS ++
Sbjct: 1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALP 60
Query: 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAY 365
A D A E G G++F D+ + C + + K
Sbjct: 61 ------ACLLRDVAQEALGVAVIGIDEGQFFPDIVEFCEAM-ANAGKTVIVA 105
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 35.3 bits (80), Expect = 0.025
Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 34/232 (14%)
Query: 234 RESVNEPLLTGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYV 291
+ S N + +G+ +D M G K L G TGKT + + N I
Sbjct: 1 QRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 60
Query: 292 CIGQKISSLINVINKLKYYNCMDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDC 351
+ + L+ ++ Q+
Sbjct: 61 AYEESRAQLLRNAYSWGM--------------------------------DFEEMERQNL 88
Query: 352 LIIYDDLTKHAWAYRQISLLLRRPPGREAFPGDVFYLHSRLLERSSKINKYFLEKKKIFN 411
L I + A + ++ + + L + S+ + F+ +
Sbjct: 89 LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYA 148
Query: 412 KNNGTLTAFPIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSNYRPAINV 463
K F S +++ +ITD I L AINV
Sbjct: 149 KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINV 200
Score = 29.9 bits (66), Expect = 1.2
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 662 NNNILETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVF 716
+N + +G+ +D +C F K I G G GKT+ + + N + +F
Sbjct: 4 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILF 60
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 35.1 bits (79), Expect = 0.025
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 231 IMDRESVNEPLLTGIKSIDSMIP--IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288
R S L TG K++D+++ + G + G+ +TGK+ + + + I
Sbjct: 6 FHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 65
Score = 27.4 bits (59), Expect = 7.0
Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 666 LETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCS 714
L TG K +D L G LFG GK+ L I
Sbjct: 16 LTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG 66
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 33.5 bits (75), Expect = 0.081
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 231 IMDRESVNEPLLTGIKSIDSMI--PIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288
++ + S L T +DS++ + G +GKT I + +N +N +
Sbjct: 6 LLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLF 65
Query: 289 IYV 291
Sbjct: 66 YDE 68
Score = 32.0 bits (71), Expect = 0.25
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 2/63 (3%)
Query: 666 LETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERS 723
L T +D + G G GKT M + N+ V +
Sbjct: 16 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGE 75
Query: 724 REG 726
Sbjct: 76 VAQ 78
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 33.2 bits (74), Expect = 0.11
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 243 TGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISS 299
TG K +D ++ G G + G+ +TGKT I + + I +
Sbjct: 7 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 65
Score = 31.7 bits (70), Expect = 0.29
Identities = 14/72 (19%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Query: 666 LETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERS 723
+ TG K +D L G +FG GKT L +
Sbjct: 5 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 64
Query: 724 REGNDFYHEMKE 735
EG +
Sbjct: 65 TEGTFRPERLLA 76
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 32.0 bits (72), Expect = 0.13
Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 2/113 (1%)
Query: 253 PIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNC 312
P G E+I+G +GK+ I I K +I + + + + +
Sbjct: 3 PKDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ--VFKPEIDNRYSKEDVVSHMGE 60
Query: 313 MDYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAY 365
+ V + + + + ++F D + + + +
Sbjct: 61 KEQAVAIKNSREILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICA 113
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.0 bits (71), Expect = 0.14
Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 10/130 (7%)
Query: 254 IGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCM 313
+ KG ++ GKT + I+ + + + V + + + + ++ +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTR----VVLSEMKEAFHGL 59
Query: 314 DYTVVVAATAADSAAEQYISPYTGCTIGEYFRDLGQDC---LIIYDD---LTKHAWAYRQ 367
D A +A + + I T+ + + +II D+ L + A R
Sbjct: 60 DVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARG 119
Query: 368 ISLLLRRPPG 377
+ R
Sbjct: 120 WAAHRARANE 129
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.7 bits (73), Expect = 0.14
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 666 LETGIKVIDLLCP--FLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERS 723
+ T I+ D + G + G +G GKT+ ++ + N IE VF+ E
Sbjct: 8 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP 67
Query: 724 RE 725
++
Sbjct: 68 QD 69
Score = 31.9 bits (71), Expect = 0.31
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 243 TGIKSIDSMIPIG--KGQRELIIGDRQTGKTTIAIDTIINQKNKNVICIYVC 292
T I+ D + G G+ L+ G TGKT +I + N +
Sbjct: 10 TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 61
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 32.8 bits (73), Expect = 0.14
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 231 IMDRESVNEPLLTGIKSIDSMI--PIGKGQRELIIGDRQTGKTTIAIDTIINQKNKNVIC 288
++ + + TG + D ++ I G+ +TGKT ++ + +
Sbjct: 9 YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG 68
Query: 289 IYVCIGQKISSLINVINK 306
I +
Sbjct: 69 YPGGKIIFIDTENTFRPD 86
Score = 30.5 bits (67), Expect = 0.88
Identities = 28/203 (13%), Positives = 50/203 (24%), Gaps = 10/203 (4%)
Query: 666 LETGIKVIDLLC--PFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERS 723
+ TG + D L FG GKT L + G +
Sbjct: 19 ITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 78
Query: 724 REGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVALTGLSIAEEFRNSGKDVLLFIDN 783
E N F + ++ R + + + + +
Sbjct: 79 TE-NTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL 137
Query: 784 IYRFTLAGTEVSAMLGRTPSAVGYQPTLAEEMGKLQERISSTKNGTITSVQ------AIY 837
+ ++ GR Q LA+ + +LQ+ + Q A
Sbjct: 138 LIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATM 196
Query: 838 VPADDLTDPSPSTTFTHLDSTIV 860
D P H +T +
Sbjct: 197 TFQADPKKPIGGHILAHASTTRI 219
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 32.7 bits (73), Expect = 0.17
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 221 RETVEKIAPGIMDRESVNEPLLTGIKSIDSMIP-IGKGQRELIIGDRQTGKTTIAIDTII 279
RE + + + E L +G I+ G+ ++ GK+T +
Sbjct: 2 RERIREH----LSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57
Query: 280 NQKNKNVICIYVC 292
+ +
Sbjct: 58 QWGTAMGKKVGLA 70
Score = 29.2 bits (64), Expect = 1.8
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 666 LETGIKVID-LLCPFLKGGKIGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFIGVGERSR 724
L +G I+ G I + G+G+GK+ + + + E
Sbjct: 18 LFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVE 77
Query: 725 EGNDFYHEM 733
E + +
Sbjct: 78 ETAEDLIGL 86
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 32.7 bits (73), Expect = 0.17
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 231 IMDRESVNEPLLTGIKSIDSMI--PIGKGQRELIIGDRQTGKTTIAIDTIINQ 281
+ + + + TG KS+D ++ I + G+ +GKT +A +
Sbjct: 8 YLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 60
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 30.4 bits (67), Expect = 0.94
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 666 LETGIKVIDLLCPFLKGGKIGLFGGA-GVGKTVNMMELIRNIAIEHKGCSVFIGVGER 722
+D + P + G +G G GK++ ++L IA V
Sbjct: 12 FAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGP 69
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 30.2 bits (67), Expect = 1.2
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 24/149 (16%)
Query: 655 KFSNQIFNNNILETGI--------------KVIDLL--CPFLKGGKIGLFGGAGVGKTVN 698
+FS Q+ + +L + +VI L L + L G AG GK+V
Sbjct: 1 QFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVI 60
Query: 699 MMELIRNIAIE---HKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGN 755
+ + + V++ S ++ +L S +
Sbjct: 61 ASQALSKSDQLIGINYDSIVWLKD---SGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEH 117
Query: 756 RLRVALTGLSIAEEFRNSGKDVLLFIDNI 784
V L + + L D++
Sbjct: 118 VTSVVLKRMICNALID--RPNTLFVFDDV 144
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 28.1 bits (61), Expect = 3.2
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 5/110 (4%)
Query: 261 LIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVA 320
+++G +GK+ +A + +Q + + ++ + L + + +
Sbjct: 10 VLMGVSGSGKSAVA-SEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALN 68
Query: 321 ATAADSAAEQ----YISPYTGCTIGEYFRDLGQDCLIIYDDLTKHAWAYR 366
A + + R+ + IY R
Sbjct: 69 DAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESR 118
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.1 bits (61), Expect = 3.4
Identities = 10/94 (10%), Positives = 19/94 (20%)
Query: 261 LIIGDRQTGKTTIAIDTIINQKNKNVICIYVCIGQKISSLINVINKLKYYNCMDYTVVVA 320
+++GD GKT + I N I + L ++
Sbjct: 9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR 68
Query: 321 ATAADSAAEQYISPYTGCTIGEYFRDLGQDCLII 354
F ++
Sbjct: 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE 102
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 28.1 bits (61), Expect = 3.7
Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 11/113 (9%)
Query: 653 PPKFSNQIFNNNILETGIKVIDLLCPFLKGGKIG---LFGGAGVGKTVNMMELIRNI-AI 708
P ++ + L LK + +G G GKT ++ L + +
Sbjct: 8 PKNLDEVTAQDHAVTV-------LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 60
Query: 709 EHKGCSVFIGVGERSREGNDFYHEMKESNVLDKVSLIYGQMNEPSGNRLRVAL 761
+ + R + ++K L + ++ +
Sbjct: 61 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIII 113
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 28.3 bits (63), Expect = 3.7
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 243 TGIKSIDSMIPIGKGQRE---LIIGDRQTGKTTIAIDTIINQKNKNVICIYV 291
TG S+D + +G R I G GKTT+A+ + + C ++
Sbjct: 40 TGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFI 91
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 28.4 bits (62), Expect = 3.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 261 LIIGDRQTGKTTIA 274
L+ GDR TGK+T
Sbjct: 32 LVFGDRGTGKSTAV 45
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 28.4 bits (63), Expect = 4.1
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 243 TGIKSIDSMIPIGKGQRE---LIIGDRQTGKTTIAIDTIINQKNKNVICIYVC 292
TG S+D + G I G +GKTT+ + I + + C ++
Sbjct: 37 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 89
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.4 bits (62), Expect = 4.5
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 685 IGLFGGAGVGKTVNMMELIRNIAIEHKGCSVFI 717
+ + G G GK+V + EL +G + I
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGL--LRGDRMVI 83
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 208
Score = 27.0 bits (59), Expect = 9.0
Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 477 KIVKKLSGDIRIMLA-QYRELESFSKFSSDLDIVTKTQLYNGEKISLLMKQKPHENYSIV 535
+ V D + + +R D+D + + ++ L+ +
Sbjct: 15 EAVVTFLPDALVTMTGGFR---RGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQG 71
Query: 536 ELIIILLIIKNRFFFKIPIKQIELFEINIIKYFRIINLKNN 576
L+ ++ FK P ++++ + + K F I+ L +
Sbjct: 72 LLLYCDILESTFEKFKQPSRKVDALD-HFQKCFLILKLDHG 111
>d2oq0a2 b.40.16.1 (A:12-114) Gamma-interferon-inducible protein
Ifi-16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.9 bits (57), Expect = 9.8
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 405 EKKKIFNKNNGTLTAFPIIETLEGDVTS-FIPTNVISITDGQIFLDTNLFNSNYRPAINV 463
EKK +F+ T T F ++ L + F +I I+D + +N
Sbjct: 26 EKKIMFHATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDY--------LEYDSLLEVNE 77
Query: 464 GLSVSRVGGAAQYKIVKKL 482
+VS G +++ K+
Sbjct: 78 ESTVSEAGPNQTFEVPNKI 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.395
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,390,969
Number of extensions: 168903
Number of successful extensions: 747
Number of sequences better than 10.0: 1
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 55
Length of query: 915
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 821
Effective length of database: 1,116,976
Effective search space: 917037296
Effective search space used: 917037296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)