BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2103
         (203 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 63/103 (61%), Gaps = 5/103 (4%)

Query: 3   FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
           FS+S HL  H+R H+GE+PY+C  C K+F+    L  H+R HTGEKPY+C  CG +F+Q 
Sbjct: 31  FSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR 90

Query: 63  THLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
            +L+ H      + HTGEKP+ C  C   FS    L+ H+  H
Sbjct: 91  ANLRAHQ-----RTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128



 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 5/103 (4%)

Query: 3   FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
           FSQ  +L+ H+R H+GE+PY C  C K+F++ + L  H+R HTGEKPY+C  CG +F++ 
Sbjct: 87  FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE 146

Query: 63  THLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
            +L  H      + HTGEKP+ C  C   FS + AL  H+  H
Sbjct: 147 DNLHTHQ-----RTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184



 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 15  IHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKC 74
           +  GE+PY C  C K+F+R   L  H+R HTGEKPY+C  CG +F+    L  H      
Sbjct: 15  LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ----- 69

Query: 75  KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           + HTGEKP+ C  C   FS +  L+ H+  H
Sbjct: 70  RTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100



 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 5/79 (6%)

Query: 3   FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
           FSQ  HL+ H+R H+GE+PY+C  C K+F+R   L  H+R HTGEKPY+C  CG +F++ 
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174

Query: 63  THLKNHAKVGKCKVHTGEK 81
             L  H      + HTG+K
Sbjct: 175 DALNVHQ-----RTHTGKK 188


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 5/88 (5%)

Query: 19  ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHT 78
           E+PY+C  C K+F++ S L  H+R HTGEKPY+C  CG +F+Q++ L+ H      + HT
Sbjct: 2   EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQ-----RTHT 56

Query: 79  GEKPHHCDICDVGFSDKFALKRHRLIHE 106
           GEKP+ C  C   FS    L RH+  H+
Sbjct: 57  GEKPYKCPECGKSFSRSDHLSRHQRTHQ 84



 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 50/69 (72%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FSQS +L+ H+R H+GE+PY+C  C K+F++ S L  H+R HTGEKPY+C  CG +F+++
Sbjct: 14 FSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRS 73

Query: 63 THLKNHAKV 71
           HL  H + 
Sbjct: 74 DHLSRHQRT 82



 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          FSQS  L+ H+R H+GE+PY+C  C K+F+R   L  H+R H  +K
Sbjct: 42 FSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
          Length = 90

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 7/89 (7%)

Query: 19  ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           ERPY C V  C++ F+R + L  H RIHTG+KP++C IC   F+++ HL  H      + 
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-----RT 56

Query: 77  HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           HTGEKP  CDIC   F+     KRH  IH
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FS+S  L  H RIH+G++P+QC +C + F+R   L  H R HTGEKP+ C ICG  F ++
Sbjct: 16 FSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75

Query: 63 THLKNHAKV 71
             K H K+
Sbjct: 76 DERKRHTKI 84



 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          FS+S HL  H R H+GE+P+ C++C + FAR      H +IH  +K
Sbjct: 44 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 7/89 (7%)

Query: 19  ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           ERPY C V  C++ F+R + L  H RIHTG+KP++C IC   F+++ HL  H      + 
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-----RT 56

Query: 77  HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           HTGEKP  CDIC   F+     KRH  IH
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FS+S  L  H RIH+G++P+QC +C + F+R   L  H R HTGEKP+ C ICG  F ++
Sbjct: 16 FSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75

Query: 63 THLKNHAKV 71
             K H K+
Sbjct: 76 DERKRHTKI 84



 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          FS+S HL  H R H+GE+P+ C++C + FAR      H +IH  +K
Sbjct: 44 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 7/89 (7%)

Query: 19  ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           ERPY C V  C++ F+R   L  H RIHTG+KP++C IC   F+++ HL  H      + 
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-----RT 56

Query: 77  HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           HTGEKP  CDIC   F+     KRH  IH
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FS+S  L  H RIH+G++P+QC +C + F+R   L  H R HTGEKP+ C ICG  F ++
Sbjct: 16 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75

Query: 63 THLKNHAKV 71
             K H K+
Sbjct: 76 DERKRHTKI 84



 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          FS+S HL  H R H+GE+P+ C++C + FAR      H +IH  +K
Sbjct: 44 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
          Length = 87

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 7/89 (7%)

Query: 19  ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           ERPY C V  C++ F+R   L  H RIHTG+KP++C IC   F+++ HL  H      + 
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-----RT 55

Query: 77  HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           HTGEKP  CDIC   F+     KRH  IH
Sbjct: 56  HTGEKPFACDICGRKFARSDERKRHTKIH 84



 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FS+S  L  H RIH+G++P+QC +C + F+R   L  H R HTGEKP+ C ICG  F ++
Sbjct: 15 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 74

Query: 63 THLKNHAKV 71
             K H K+
Sbjct: 75 DERKRHTKI 83



 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
          FS+S HL  H R H+GE+P+ C++C + FAR      H +IH
Sbjct: 43 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 9/102 (8%)

Query: 8   HLKNHERIHSGERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHL 65
           HL+ H R H+GE+PYQC+   CE+ F+R   L  H+R HTG KP++C  C   F+++ HL
Sbjct: 23  HLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL 82

Query: 66  KNHAKVGKCKVHTGEKPHHC--DICDVGFSDKFALKRHRLIH 105
           K H      + HTGEKP  C    C   F+    L RH  +H
Sbjct: 83  KTHT-----RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119



 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 3   FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC--SICGSAFN 60
           FS+S  LK H+R H+G +P+QC+ C++ F+R   L  H R HTGEKP+ C    C   F 
Sbjct: 48  FSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 61  QATHLKNH 68
           ++  L  H
Sbjct: 108 RSDELVRH 115



 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 17  SGERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFNQATHLKNHAKVG 72
           S +RP+ C    C K + + S L  H R HTGEKPY+C    C   F+++  LK H    
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ--- 58

Query: 73  KCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
             + HTG KP  C  C   FS    LK H   H
Sbjct: 59  --RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
          Length = 90

 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 7/89 (7%)

Query: 19  ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           ERPY C V  C++ F+  S L  H RIHTG+KP++C IC   F+++ HL  H      + 
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-----RT 56

Query: 77  HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           HTGEKP  CDIC   F+     KRH  IH
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FS S +L  H RIH+G++P+QC +C + F+R   L  H R HTGEKP+ C ICG  F ++
Sbjct: 16 FSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75

Query: 63 THLKNHAKV 71
             K H K+
Sbjct: 76 DERKRHTKI 84



 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          FS+S HL  H R H+GE+P+ C++C + FAR      H +IH  +K
Sbjct: 44 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
           Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 7/89 (7%)

Query: 19  ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           ERPY C V  C++ F+R   L  H RIHTG+KP++C IC   F+++ HL  H      + 
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-----RT 56

Query: 77  HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           HTGEKP  CDIC   F+     KRH  IH
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FS+S  L  H RIH+G++P+QC +C + F+R   L  H R HTGEKP+ C ICG  F ++
Sbjct: 16 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75

Query: 63 THLKNHAKV 71
             K H K+
Sbjct: 76 DERKRHTKI 84



 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
          FS+S HL  H R H+GE+P+ C++C + FAR      H +IH
Sbjct: 44 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 7/89 (7%)

Query: 19  ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           ERPY C V  C++ F++  +L  H RIHTG+KP++C IC   F+++ HL  H      + 
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-----RT 56

Query: 77  HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           HTGEKP  CDIC   F+     KRH  IH
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHTKIH 85



 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FSQS  L  H RIH+G++P+QC +C + F+R   L  H R HTGEKP+ C ICG  F ++
Sbjct: 16 FSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75

Query: 63 THLKNHAKV 71
             K H K+
Sbjct: 76 DERKRHTKI 84



 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          FS+S HL  H R H+GE+P+ C++C + FAR      H +IH  +K
Sbjct: 44 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
          Length = 90

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 7/89 (7%)

Query: 19  ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           ERPY C V  C++ F++ + L  H RIHTG+KP++C IC   F+Q T L  H      + 
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHI-----RT 56

Query: 77  HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           HTGEKP  CDIC   F+      RH  IH
Sbjct: 57  HTGEKPFACDICGRKFATLHTRDRHTKIH 85



 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FSQ  +L  H RIH+G++P+QC +C + F++H+ L  H R HTGEKP+ C ICG  F   
Sbjct: 16 FSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATL 75

Query: 63 THLKNHAKV 71
               H K+
Sbjct: 76 HTRDRHTKI 84



 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          FSQ   L  H R H+GE+P+ C++C + FA   T   H +IH  +K
Sbjct: 44 FSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
          Length = 90

 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 19  ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           ERPY C V  C++ F++ + L  H RIHTG+KP++C IC   F+Q   L  H      + 
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHI-----RT 56

Query: 77  HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           HTGEKP  CDIC   F+      RH  IH
Sbjct: 57  HTGEKPFACDICGRKFATLHTRTRHTKIH 85



 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FSQ  +L  H RIH+G++P+QC +C + F++ ++L  H R HTGEKP+ C ICG  F   
Sbjct: 16 FSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATL 75

Query: 63 THLKNHAKV 71
               H K+
Sbjct: 76 HTRTRHTKI 84


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
          Northeast Structural Genomics Consortium
          Length = 74

 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 5/64 (7%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHT 78
          ++PY+C+ C+ +F     L +H+ +HTGEKPYRC+ICG+ FN+  +LK H      ++H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT-----RIHS 69

Query: 79 GEKP 82
          GEKP
Sbjct: 70 GEKP 73



 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          F    +L +H+ +H+GE+PY+C +C   F R + L  H RIH+GEKP
Sbjct: 27 FRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73



 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 47  EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           +KPY+C  C ++F    +L +H  V     HTGEKP+ C+IC   F+    LK H  IH
Sbjct: 15  DKPYKCDRCQASFRYKGNLASHKTV-----HTGEKPYRCNICGAQFNRPANLKTHTRIH 68


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
          Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 2  LFSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59
          ++++S HLK H R H+GE+PY+C  E C+  FAR   L  H R HTG KP++C +C  +F
Sbjct: 26 VYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF 85

Query: 60 NQATHLKNHAK 70
          +++ HL  H K
Sbjct: 86 SRSDHLALHMK 96



 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 16/105 (15%)

Query: 4   SQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS--ICGSAFNQ 61
           S  P L+   RIH  + P     C K + + S L  H R HTGEKPY+C+   C   F +
Sbjct: 5   SSGPDLEK-RRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR 59

Query: 62  ATHLKNHAKVGKCKVHTGEKPHHCDICDVGF--SDKFAL--KRHR 102
           +  L  H +      HTG KP  C +C+  F  SD  AL  KRH+
Sbjct: 60  SDELTRHYRK-----HTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99



 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
          F++S  L  H R H+G +P+QC VC ++F+R   L  H + H
Sbjct: 57 FARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 44/68 (64%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          F +S  L  H  IHS  RPY C+ C K F + S +  H  IHTGEKP++C +CG AF+Q+
Sbjct: 11 FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQS 70

Query: 63 THLKNHAK 70
          ++L  H++
Sbjct: 71 SNLITHSR 78



 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 22  YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
           + C++C K+F R STL  H  IH+  +PY C  CG  F+Q + +K H       +HTGEK
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-----FIHTGEK 56

Query: 82  PHHCDICDVGFSDKFALKRHRLIH 105
           PH C +C   FS    L  H   H
Sbjct: 57  PHKCQVCGKAFSQSSNLITHSRKH 80


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
          Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          F++S +L  HER H+ ERPY C++C K F R   L +HR IH+ EKP++C  CG  F Q+
Sbjct: 27 FTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQS 86

Query: 63 THLKNH 68
            L  H
Sbjct: 87 RTLAVH 92



 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 19  ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHT 78
           ++ + C+ C + F +   L  H R HT E+PY C IC  AF +  HL++H       +H+
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR-----YIHS 69

Query: 79  GEKPHHCDICDVGFSDKFALKRHRLIH 105
            EKP  C  C  GF     L  H+ +H
Sbjct: 70  KEKPFKCQECGKGFCQSRTLAVHKTLH 96



 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 47  EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHE 106
           +K + C  CG  F ++ +L  H +      HT E+P+ CDIC   F  +  L+ HR IH 
Sbjct: 15  KKEFICKFCGRHFTKSYNLLIHERT-----HTDERPYTCDICHKAFRRQDHLRDHRYIHS 69

Query: 107 K 107
           K
Sbjct: 70  K 70



 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
          F +  HL++H  IHS E+P++C+ C K F +  TL  H+ +H
Sbjct: 55 FRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Zinc Finger Protein 24
          Length = 72

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 37/53 (69%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKV 71
          E+PY C  C K F+R S L  H+R+HTGEKPY+C  CG AF+Q + L NH ++
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64



 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHT 45
          FS+S  L  H+R+H+GE+PY+C  C K F+++S L NH+RIHT
Sbjct: 24 FSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66



 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 47  EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           EKPY C  CG AF++++ L  H +V     HTGEKP+ C  C   FS    L  H+ IH
Sbjct: 12  EKPYGCVECGKAFSRSSILVQHQRV-----HTGEKPYKCLECGKAFSQNSGLINHQRIH 65


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domain Of Zinc Finger Protein 435
          Length = 77

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 5/63 (7%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
          R Y+C+ C K+F+  S L  HRR HTGEKPY+C  CG AF Q +HL     +G  +VHTG
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL-----IGHHRVHTG 71

Query: 80 EKP 82
            P
Sbjct: 72 SGP 74



 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 29/47 (61%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          FS S  L  H R H+GE+PY+C+ C K F + S L  H R+HTG  P
Sbjct: 28 FSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74



 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 50  YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           Y+C  CG +F+ ++ L  H +      HTGEKP+ CD C   F  +  L  H  +H
Sbjct: 19  YKCDECGKSFSHSSDLSKHRRT-----HTGEKPYKCDECGKAFIQRSHLIGHHRVH 69


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 2   LFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAF 59
           +F  +  ++ H   H G R + C  C K F   S L  H+ +HTGEKP++C+   CG  F
Sbjct: 16  MFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF 74

Query: 60  NQATHLKNHAKVGKCKVHTGEKPHHC--DICDVGFSDKFALKRHRLIHEKYARN 111
           +   +L+ H      ++HTG++P+ C  D C+  F+    LK H L H K   N
Sbjct: 75  SLDFNLRTHV-----RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
          Bound To Its Target Dna
          Length = 89

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 3  FSQSPHLKNHERIHSGERPYQCE--VCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFN 60
          +++S HLK H R H+GE+PY C+   C   FAR   L  H R HTG +P++C  C  AF+
Sbjct: 17 YTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 76

Query: 61 QATHLKNHAK 70
          ++ HL  H K
Sbjct: 77 RSDHLALHMK 86



 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 41/81 (50%), Gaps = 11/81 (13%)

Query: 27  CEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHH 84
           C KT+ + S L  H R HTGEKPY C    CG  F ++  L  H +      HTG +P  
Sbjct: 13  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-----HTGHRPFQ 67

Query: 85  CDICDVGF--SDKFAL--KRH 101
           C  CD  F  SD  AL  KRH
Sbjct: 68  CQKCDRAFSRSDHLALHMKRH 88



 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
          F++S  L  H R H+G RP+QC+ C++ F+R   L  H + H
Sbjct: 47 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88



 Score = 35.4 bits (80), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 55  CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI--CDVGFSDKFALKRHRLIH 105
           CG  + +++HLK H +      HTGEKP+HCD   C   F+    L RH   H
Sbjct: 13  CGKTYTKSSHLKAHLRT-----HTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
          Bound To Its Target Dna
          Length = 90

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 3  FSQSPHLKNHERIHSGERPYQCE--VCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFN 60
          +++S HLK H R H+GE+PY C+   C   FAR   L  H R HTG +P++C  C  AF+
Sbjct: 18 YTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 77

Query: 61 QATHLKNHAK 70
          ++ HL  H K
Sbjct: 78 RSDHLALHMK 87



 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 41/81 (50%), Gaps = 11/81 (13%)

Query: 27  CEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHH 84
           C KT+ + S L  H R HTGEKPY C    CG  F ++  L  H +      HTG +P  
Sbjct: 14  CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-----HTGHRPFQ 68

Query: 85  CDICDVGF--SDKFAL--KRH 101
           C  CD  F  SD  AL  KRH
Sbjct: 69  CQKCDRAFSRSDHLALHMKRH 89



 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
          F++S  L  H R H+G RP+QC+ C++ F+R   L  H + H
Sbjct: 48 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89



 Score = 35.4 bits (80), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 55  CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI--CDVGFSDKFALKRHRLIH 105
           CG  + +++HLK H +      HTGEKP+HCD   C   F+    L RH   H
Sbjct: 14  CGKTYTKSSHLKAHLRT-----HTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
          In Zinc Finger Protein 278
          Length = 95

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 2  LFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGE--KPYRCSICGSAF 59
          +F    HL  H+  HSGE+PY C VC   F R   +  H R H G   KPY C  CG  F
Sbjct: 16 IFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF 75

Query: 60 NQATHLKNHAKVGKCKVHTG 79
          ++  HL  H K    +VH+G
Sbjct: 76 SRPDHLNGHIK----QVHSG 91



 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 17  SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           SG     CE+C K F     L  H+  H+GEKPY C +CG  F +   +  H +     V
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62

Query: 77  HTGEKPHHCDICDVGFSDKFALKRH 101
               KP+ C  C  GFS    L  H
Sbjct: 63  ---GKPYICQSCGKGFSRPDHLNGH 84



 Score = 35.8 bits (81), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 45  TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLI 104
           +G     C ICG  F    HL  H        H+GEKP+ C +C + F  K  +  H   
Sbjct: 3   SGSSGVACEICGKIFRDVYHLNRHKLS-----HSGEKPYSCPVCGLRFKRKDRMSYHVRS 57

Query: 105 HE 106
           H+
Sbjct: 58  HD 59


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
          Zinc-Binding Domain Of The Zinc Finger Protein 64,
          Isoforms 1 And 2
          Length = 96

 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
          FS+   LK H R H+G +PY+C+ C+   A  S+L  H RIH+ E+P++C IC  A   +
Sbjct: 18 FSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS 77

Query: 63 THLKNHAKVGKCKVHTGE 80
          + L  H      + HTG+
Sbjct: 78 SQLTVHL-----RSHTGD 90



 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 21  PYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
           P++CEVC K F+R   L  H R HTG KPY+C  C  A   ++ L  H      ++H+ E
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-----RIHSDE 62

Query: 81  KPHHCDICDVGFSDKFALKRHRLIH 105
           +P  C IC     +   L  H   H
Sbjct: 63  RPFKCQICPYASRNSSQLTVHLRSH 87


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 10/96 (10%)

Query: 12  HERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRC--SICGSAFNQATHLKN 67
           H R H+GE+P++C  E C K+++R   L  H R HTGEKPY C    C  AF+ A+    
Sbjct: 58  HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117

Query: 68  HAKVGKCKVHTGEKPHHCDI--CDVGFSDKFALKRH 101
           H      + H+ EKP+ C +  C   ++D  +L++H
Sbjct: 118 HQN----RTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149



 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 3   FSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHR-RIHTGEKPYRCSI--CGS 57
           +S+  +LK H R H+GE+PY C  E C K F+  S    H+ R H+ EKPY C +  C  
Sbjct: 79  YSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTK 138

Query: 58  AFNQATHLKNHAKV 71
            +   + L+ H K 
Sbjct: 139 RYTDPSSLRKHVKT 152


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
           Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 17  SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
           SG++ Y C+ C K+F   S    H  +H G +PY C +CG  F    HL     VG  K+
Sbjct: 6   SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHL-----VGHMKI 59

Query: 77  HTGEKPHHCDICDVGFSDKFALKRH 101
           HTG KP+ C+IC   F  + +  RH
Sbjct: 60  HTGIKPYECNICAKRFMWRDSFHRH 84



 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 29/57 (50%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59
          F+       H  +H G RPY C VC K F     L  H +IHTG KPY C+IC   F
Sbjct: 19 FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75



 Score = 35.0 bits (79), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
          F    HL  H +IH+G +PY+C +C K F    +   HR + +  K Y
Sbjct: 47 FKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSY 92



 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 45  TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLI 104
           +G+K Y C  CG +F   +    H  +     H G +P+ C +C   F  K  L  H  I
Sbjct: 6   SGDKLYPCQ-CGKSFTHKSQRDRHMSM-----HLGLRPYGCGVCGKKFKMKHHLVGHMKI 59

Query: 105 H 105
           H
Sbjct: 60  H 60


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKV 71
          +P+QC +C + F+R   L  H R HTGEKP+ C ICG  F ++   K H  +
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53



 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 48  KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLI 104
           KP++C IC   F+++ HL  H +      HTGEKP  CDIC   F+     KRHR I
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRT-----HTGEKPFACDICGRKFARSDERKRHRDI 53



 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRI 43
          FS+S HL  H R H+GE+P+ C++C + FAR      HR I
Sbjct: 13 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 9   LKNHERIHSGERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFNQATH 64
           L NH R+H+GE+P+ C    C K FAR   L  H+R HTGEKP++C    C   F  ++ 
Sbjct: 78  LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137

Query: 65  LKNHAKV 71
            K H  V
Sbjct: 138 RKKHMHV 144



 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 23  QCEVCEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGE 80
           +C    K+F     L NH R+HTGEKP+ C    CG  F ++ +LK H      + HTGE
Sbjct: 64  ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK-----RTHTGE 118

Query: 81  KPHHCDI--CDVGFSDKFALKRHRLIH 105
           KP  C+   CD  F++    K+H  +H
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVH 145



 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 2   LFSQSPHLKNHERIHSGERPYQCEV--CEKTFARHSTLWNHRRIHTGEK 48
           +F++S +LK H+R H+GE+P++CE   C++ FA  S    H  +HT +K
Sbjct: 101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 8   HLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRR---IHTGEKPYRCSICGSAFNQATH 64
           +LK H R H+GE+P++C  C K + R   L  H     ++  E+ + CS+C   F +   
Sbjct: 22  YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME 81

Query: 65  LKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRL 103
           L+ H        HTGE P+ C  C   F  K  L+ H +
Sbjct: 82  LRLHM-----VSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
          Length = 73

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 20 RPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKV 71
          RPY C V  C++ F+R   L  H RIHTG+KP++C IC   F+++ HL  H + 
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71



 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHT 45
          FS+S  L  H RIH+G++P+QC +C + F+R   L  H R HT
Sbjct: 31 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73



 Score = 34.3 bits (77), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 48  KPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRH 101
           +PY C +  C   F+++  L  H ++     HTG+KP  C IC   FS    L  H
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRI-----HTGQKPFQCRICMRNFSRSDHLTTH 68


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
          Nmr, 25 Structures
          Length = 60

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
          + CEVC + FAR   L  H R HT EKPY C +C  AF +   L  HA+    K+H+G
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ----KIHSG 56



 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 3  FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNH-RRIHTG 46
          F++  HLK H R H+ E+PY C +C + F R   L  H ++IH+G
Sbjct: 12 FARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56



 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 50  YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRH 101
           + C +C  AF +  HLK H +      HT EKP+ C +C+  F+ +  L RH
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRS-----HTNEKPYPCGLCNRAFTRRDLLIRH 49


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 26/31 (83%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C+VC K F+ H++L  H+R+H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40



 Score = 33.1 bits (74), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C +C  AF+    L  H      +VH+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQ-----RVHSGEKP 40



 Score = 28.9 bits (63), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ CD+C   FS   +L +H+ +H
Sbjct: 10  EKPYECDVCRKAFSHHASLTQHQRVH 35


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
          Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
          Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
          Protein In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 31/62 (50%)

Query: 9  LKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNH 68
          L+ H  IHS E+ Y C  CEK F        H   HTGE+ Y+C  CG +F     + +H
Sbjct: 38 LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97

Query: 69 AK 70
           K
Sbjct: 98 IK 99



 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 8  HLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKN 67
          H  ++E I  G   Y C VC++++   ++L  H  IH+ EK Y C  C   F  A +   
Sbjct: 9  HDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTK 68

Query: 68 HAKVGKCKVHTGEKPHHCDICDVGF 92
          H        HTGE+ + C  C   F
Sbjct: 69 HE-----IHHTGERRYQCLACGKSF 88



 Score = 31.2 bits (69), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 2  LFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNH 40
          +F  + +   HE  H+GER YQC  C K+F  +  + +H
Sbjct: 59 VFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 27/53 (50%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKV 71
          ERP+ C  C KT+   S L  HRR H G +P  C  CG  F   + +  H KV
Sbjct: 2  ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54



 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 47  EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHE 106
           E+P+ C+ CG  +  A+ L  H +      H G +P  C  C   F D+  + RH  +H+
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRA-----HLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56



 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 9  LKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
          L  H R H G RP  C  C K F   S +  H ++H
Sbjct: 20 LSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55



 Score = 26.6 bits (57), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIHEKY 108
           E+P  C+ C   + D   L RHR  H  Y
Sbjct: 2   ERPFFCNFCGKTYRDASGLSRHRRAHLGY 30


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++C+ C+K+F + S L +HR IHTGEKP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 78  TGEKPHHCDICDVGFSDKFALKRHRLIH 105
           T EKP  CD CD  F  + AL  HR+IH
Sbjct: 8   TAEKPFRCDTCDKSFRQRSALNSHRMIH 35



 Score = 35.8 bits (81), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          T EKP+RC  C  +F Q + L +H       +HTGEKP
Sbjct: 8  TAEKPFRCDTCDKSFRQRSALNSHR-----MIHTGEKP 40


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 25/31 (80%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C+VC K+F   S+L  H+RIHTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C +C  +F   + L  H      ++HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQ-----RIHTGEKP 40


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          ER Y+C  C K FAR STL  H+RIHTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40



 Score = 30.4 bits (67), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          E+ Y CS CG AF + + L  H      ++HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQ-----RIHTGEKP 40


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          ERPY C VC K F   S L  H++IHTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          E+PY C++CG AF   ++L  H      K+HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQ-----KIHTGEKP 40



 Score = 27.7 bits (60), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           E+P+ C +C   F+D+  L +H+ IH
Sbjct: 10  ERPYICTVCGKAFTDRSNLIKHQKIH 35


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
          Zinc Finger Protein 32
          Length = 41

 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          SGE+PYQC+ C K+F++  +L  H R+HTG  P
Sbjct: 6  SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38



 Score = 33.1 bits (74), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          +GEKPY+C  CG +F+Q   L  H      ++HTG  P
Sbjct: 6  SGEKPYQCKECGKSFSQRGSLAVHE-----RLHTGSGP 38



 Score = 27.7 bits (60), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 78  TGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNS 112
           +GEKP+ C  C   FS + +L  H  +H     +S
Sbjct: 6   SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K FA+ + L  H+RIHTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40



 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPYRC  CG AF Q  +L  H      ++HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQ-----RIHTGEKP 40



 Score = 27.7 bits (60), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F+Q  +L  H+RIH+GE+P
Sbjct: 22 FAQKANLTQHQRIHTGEKP 40



 Score = 26.9 bits (58), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ C  C   F+ K  L +H+ IH
Sbjct: 10  EKPYRCGECGKAFAQKANLTQHQRIH 35


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C +C K+F + S L  H++IHTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY CSICG +F + + L  H      ++HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQ-----QIHTGEKP 40



 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ C IC   F+ K  L  H+ IH
Sbjct: 10  EKPYECSICGKSFTKKSQLHVHQQIH 35


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY CE C K F   S L  H+RIHTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C  CG AF   + L+ H      ++HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQ-----RIHTGEKP 40


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P+QCE C K F ++S L +H+R+HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP++C  CG  F Q +HL +H      +VHTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQ-----RVHTGEKP 40



 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 17/19 (89%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F+Q+ HL +H+R+H+GE+P
Sbjct: 22 FTQNSHLHSHQRVHTGEKP 40


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F++ S L  H+RIHTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40



 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C+ CG AF+Q + L  H      ++HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQ-----RIHTGEKP 40



 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          FSQ+  L  H+RIH+GE+P
Sbjct: 22 FSQTSKLARHQRIHTGEKP 40



 Score = 28.1 bits (61), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ C+ C   FS    L RH+ IH
Sbjct: 10  EKPYKCNECGKAFSQTSKLARHQRIH 35


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domains From Human Krueppel-Like Factor 10
          Length = 72

 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 3  FSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIH 44
          + +S HLK H R H+GE+P+ C  + CE+ FAR   L  HRR H
Sbjct: 29 YFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 33.9 bits (76), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 55  CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD--ICDVGFSDKFALKRHRLIH 105
           CG  + +++HLK H +      HTGEKP  C    C+  F+    L RHR  H
Sbjct: 25  CGKTYFKSSHLKAHTRT-----HTGEKPFSCSWKGCERRFARSDELSRHRRTH 72



 Score = 33.9 bits (76), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 27 CEKTFARHSTLWNHRRIHTGEKPYRCS--ICGSAFNQATHLKNHAKV 71
          C KT+ + S L  H R HTGEKP+ CS   C   F ++  L  H + 
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F ++S L NH+RIHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40



 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C+ CG  F Q +HL NH      ++HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQ-----RIHTGVKP 40



 Score = 30.8 bits (68), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 17/20 (85%)

Query: 2  LFSQSPHLKNHERIHSGERP 21
          +F+Q+ HL NH+RIH+G +P
Sbjct: 21 VFTQNSHLANHQRIHTGVKP 40


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F ++S L NH RIHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C+ CG  F Q +HL NH      ++HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHW-----RIHTGEKP 40



 Score = 31.6 bits (70), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 17/20 (85%)

Query: 2  LFSQSPHLKNHERIHSGERP 21
          +F+Q+ HL NH RIH+GE+P
Sbjct: 21 VFTQNSHLTNHWRIHTGEKP 40


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++CE C K F ++S L +H+R+HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40



 Score = 35.8 bits (81), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP++C  CG  F Q + L +H      +VHTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQ-----RVHTGEKP 40



 Score = 26.6 bits (57), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 16/19 (84%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F+Q+  L +H+R+H+GE+P
Sbjct: 22 FTQNSQLHSHQRVHTGEKP 40


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F   S L+ H++IHTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40



 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPYRC+ CG AF   ++L  H      K+HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQ-----KIHTGEKP 40


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY C  C KTF++ S L  H+R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40



 Score = 33.9 bits (76), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C+ CG  F+Q + L  H      + HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQ-----RTHTGEKP 40


>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P+ C  C K F+ H  L  HRRIHTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP+ C  CG AF+    L  H      ++HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHR-----RIHTGEKP 40



 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP  C  C   FSD   L +HR IH
Sbjct: 10  EKPFDCIDCGKAFSDHIGLNQHRRIH 35


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          +PYQC  C K F++ S L  H+R+HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 5/35 (14%)

Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          KPY+C+ CG AF+Q + L  H      +VHTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ-----RVHTGEKP 40



 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          FSQ+  L  H+R+H+GE+P
Sbjct: 22 FSQTSKLARHQRVHTGEKP 40


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          SGE+PY C  C K F+  S L  H+RIHTGEK
Sbjct: 6  SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 32.7 bits (73), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          +GEKPY C+ CG  F+  ++L  H      ++HTGEK
Sbjct: 6  SGEKPYGCNECGKDFSSKSYLIVHQ-----RIHTGEK 37



 Score = 28.1 bits (61), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 78  TGEKPHHCDICDVGFSDKFALKRHRLIH 105
           +GEKP+ C+ C   FS K  L  H+ IH
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIH 33


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C+VC K F + + L  H++ HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40



 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C +C  AF Q  HL  H      K HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQ-----KTHTGEKP 40



 Score = 27.3 bits (59), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F+Q  HL  H++ H+GE+P
Sbjct: 22 FTQKAHLAQHQKTHTGEKP 40



 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ C +C   F+ K  L +H+  H
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTH 35


>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          612- 644) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++C  C K+F+  S L  H+RIHTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP+ C+ CG +F+ ++ L  H      ++HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQ-----RIHTGEKP 40



 Score = 27.3 bits (59), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          FS S  L  H+RIH+GE+P
Sbjct: 22 FSISSQLATHQRIHTGEKP 40


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C  CG AF+Q THL  H      +VHTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQ-----RVHTGEKP 40



 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C+ C K F++ + L  H+R+HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40



 Score = 30.4 bits (67), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 16/19 (84%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          FSQ+ HL  H+R+H+GE+P
Sbjct: 22 FSQTTHLIQHQRVHTGEKP 40


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F  HS L  H+ IHTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40



 Score = 34.7 bits (78), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C+ CG AF   ++L  H       +HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQ-----VIHTGEKP 40


>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
          Zinc Finger Protein 473
          Length = 42

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          SGE+PY C+ C K F + S L  HRR+HTGE
Sbjct: 6  SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36



 Score = 33.9 bits (76), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
          +GEKPY C  CG AF Q++ L  H      +VHTGE
Sbjct: 6  SGEKPYVCQECGKAFTQSSCLSIHR-----RVHTGE 36



 Score = 26.6 bits (57), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 78  TGEKPHHCDICDVGFSDKFALKRHRLIH 105
           +GEKP+ C  C   F+    L  HR +H
Sbjct: 6   SGEKPYVCQECGKAFTQSSCLSIHRRVH 33


>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          329- 359) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          SGE+ ++C  C KTF+ HS L  H+RIHTGE P
Sbjct: 6  SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F ++S L  HR IHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C+ CG  F Q +HL  H       +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR-----GIHTGEKP 40



 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 2  LFSQSPHLKNHERIHSGERP 21
          +F+Q+ HL  H  IH+GE+P
Sbjct: 21 VFTQNSHLARHRGIHTGEKP 40



 Score = 26.6 bits (57), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ C+ C   F+    L RHR IH
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIH 35


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY C+ C K F   + L  H+RIHTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C  CG AF  +  L  H      ++HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQ-----RIHTGEKP 40



 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ CD C   F     L RH+ IH
Sbjct: 10  EKPYVCDYCGKAFGLSAELVRHQRIH 35


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
          Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 26/51 (50%)

Query: 18 GERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNH 68
          G    +C  C K F  +  L  H R HTGEKPY+C  C  A  Q T L+ H
Sbjct: 1  GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51



 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 46  GEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
           G     CS CG  F    +L  H +      HTGEKP+ C+ C+   + K +L+ H   H
Sbjct: 1   GSSSRECSYCGKFFRSNYYLNIHLRT-----HTGEKPYKCEFCEYAAAQKTSLRYHLERH 55

Query: 106 EK 107
            K
Sbjct: 56  HK 57



 Score = 37.0 bits (84), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 2  LFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
           F  + +L  H R H+GE+PY+CE CE   A+ ++L  H   H
Sbjct: 13 FFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F RH+ L  HRRIHTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 38.1 bits (87), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+CS CG AF++ THL  H      ++HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHR-----RIHTGYRP 40


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F ++S L  HR IHTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40



 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C+ CG  F Q +HL  H       +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHR-----GIHTGEKP 40



 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 2  LFSQSPHLKNHERIHSGERP 21
          +F+Q+ HL  H  IH+GE+P
Sbjct: 21 VFTQNSHLVRHRGIHTGEKP 40


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY C  C K+F + S L  HRRIHTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40



 Score = 37.4 bits (85), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C+ CG +F Q +HL  H      ++HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHR-----RIHTGEKP 40



 Score = 27.3 bits (59), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F Q  HL  H RIH+GE+P
Sbjct: 22 FIQKSHLNRHRRIHTGEKP 40



 Score = 26.9 bits (58), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ C+ C   F  K  L RHR IH
Sbjct: 10  EKPYICNECGKSFIQKSHLNRHRRIH 35


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F ++S L  HRR+HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 37.4 bits (85), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C+ CG  F Q +HL  H      +VHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHR-----RVHTGGKP 40



 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 2  LFSQSPHLKNHERIHSGERP 21
          +F+Q+ HL  H R+H+G +P
Sbjct: 21 VFTQNSHLARHRRVHTGGKP 40


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C VC K F+   +L  H+RIH+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40



 Score = 35.0 bits (79), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY CS+CG AF+    L  H      ++H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQ-----RIHSGKKP 40



 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ C +C   FS + +L  H+ IH
Sbjct: 10  EKPYECSVCGKAFSHRQSLSVHQRIH 35


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+ Y+C+VC K F++ S L  H+R+HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EK Y+C +CG  F+Q++HL+ H      +VHTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQ-----RVHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 17/19 (89%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          FSQS HL+ H+R+H+GE+P
Sbjct: 22 FSQSSHLQTHQRVHTGEKP 40


>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
 pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
          Length = 190

 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 51/138 (36%), Gaps = 43/138 (31%)

Query: 9   LKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCSI------------ 54
           L+ H   H+GE+P+ C  E CEK F     L  H   HTGEK + C              
Sbjct: 30  LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 89

Query: 55  ----------------------CGSAFNQATHLKNHAKVGKCKVHTGEKPHHC--DICDV 90
                                 CG AF +   LK H        HT + P+ C  + CD 
Sbjct: 90  MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ-----FSHTQQLPYECPHEGCDK 144

Query: 91  GFSDKFALKRHRLIHEKY 108
            FS    LKRH  +H  Y
Sbjct: 145 RFSLPSRLKRHEKVHAGY 162



 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 27  CEKTFARHSTLWNHRRIHTGEKPYRC--SICGSAFNQATHLKNHAKVGKCKVHTGEKPHH 84
           C   + ++  L  H   HTGEKP+ C    C   F    HL  H+       HTGEK   
Sbjct: 20  CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-----LTHTGEKNFT 74

Query: 85  CDI--CDVGFSDKFALKRH 101
           CD   CD+ F+ K  +K+H
Sbjct: 75  CDSDGCDLRFTTKANMKKH 93



 Score = 35.0 bits (79), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 9/62 (14%)

Query: 48  KPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHHC--DICDVGFSDKFALKRHRL 103
           K Y CS   CG+A+N+   L+ H     CK HTGEKP  C  + C+ GF+    L RH L
Sbjct: 11  KRYICSFADCGAAYNKNWKLQAHL----CK-HTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65

Query: 104 IH 105
            H
Sbjct: 66  TH 67


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F  +S L  H+RIHTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40



 Score = 35.4 bits (80), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C+ CG  F   ++L  H      ++HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQ-----RIHTGEKP 40


>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          435- 467) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K+F + S L  H+RIHTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 33.1 bits (74), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY CS CG +F + + L  H      ++HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQ-----RIHTGENP 40


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          SG++P  C  C KTF + S L  H+RIH+GEKP
Sbjct: 6  SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38



 Score = 31.6 bits (70), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          +G+KP  C+ CG  F Q++ L  H      ++H+GEKP
Sbjct: 6  SGKKPLVCNECGKTFRQSSCLSKHQ-----RIHSGEKP 38



 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F QS  L  H+RIHSGE+P
Sbjct: 20 FRQSSCLSKHQRIHSGEKP 38


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+ Y+C  C K F+R+S L  H++IHTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EK Y+C+ CG  F++ + L  H      K+HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQ-----KIHTGEKP 40



 Score = 26.9 bits (58), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 2  LFSQSPHLKNHERIHSGERP 21
          +FS++  L  H++IH+GE+P
Sbjct: 21 VFSRNSQLSQHQKIHTGEKP 40


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          ERP++C  C K+F + + L  H+RIHTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 35.8 bits (81), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          E+P++C+ CG +F Q+ HL  H      ++HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQ-----RIHTGEKP 40



 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F QS HL  H+RIH+GE+P
Sbjct: 22 FIQSAHLIQHQRIHTGEKP 40


>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          536- 568) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          +PY C  C K F+ +S+L  H+ IHTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          KPY C+ CG AF+  + L  H       +HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQ-----VIHTGEKP 40


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F+  S+L  H+ IHTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40



 Score = 32.7 bits (73), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C+ CG AF+  + L  H       +HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQ-----AIHTGKKP 40



 Score = 27.7 bits (60), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ C+ C   FS + +L  H+ IH
Sbjct: 10  EKPYECNQCGKAFSVRSSLTTHQAIH 35


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          ++PY+C  C K F ++S L  HR IHTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          +KPY+C+ CG  F Q +HL  H       +HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHR-----GIHTGEKP 40



 Score = 27.3 bits (59), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 2  LFSQSPHLKNHERIHSGERP 21
          +F+Q+ HL  H  IH+GE+P
Sbjct: 21 VFTQNSHLARHRGIHTGEKP 40


>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F R+S L  H+ IHTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 35.0 bits (79), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C  CG  F + +HL  H       +HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQ-----LIHTGEKP 40


>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 484
          Length = 42

 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 19/31 (61%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          SGE+PY C  C K F R S    H RIHTGE
Sbjct: 6  SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36



 Score = 33.5 bits (75), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
          +GEKPY C+ CG AF + +H   H      ++HTGE
Sbjct: 6  SGEKPYVCTECGKAFIRKSHFITHE-----RIHTGE 36


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          SGE+PY C  C K F   S L  H+ +HTG KP
Sbjct: 6  SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38



 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          +GEKPY C+ CG AF   + L  H       VHTG KP
Sbjct: 6  SGEKPYSCNECGKAFTFKSQLIVHK-----GVHTGVKP 38


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP++C  CG ++NQ  HL  H      +VHTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQ-----RVHTGEKP 40



 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++C  C K++ +   L  H+R+HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 26.6 bits (57), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          ++Q  HL  H+R+H+GE+P
Sbjct: 22 YNQRVHLTQHQRVHTGEKP 40


>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          724- 756) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          +RPY+C  C K F   S+L  HRR HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          ++PY C  CG AF   + L  H      + HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHR-----RSHTGEKP 40


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++C  C+K F   S L  H+R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP+ CS C  AFN  ++L  H      + HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQ-----RTHTGEKP 40


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          ++C  C+KTF + S+L  H+RIHTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40



 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F+QS  L  H+RIH+GE+P
Sbjct: 22 FTQSSSLTVHQRIHTGEKP 40



 Score = 27.3 bits (59), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          +K ++C+ C   F Q++ L  H      ++HTGEKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQ-----RIHTGEKP 40


>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          581- 609) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          SGE+PY+C  C K F   S L  H+R HTGE
Sbjct: 6  SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36



 Score = 31.6 bits (70), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
          +GEKPY C+ CG AF   + L  H      + HTGE
Sbjct: 6  SGEKPYECTDCGKAFGLKSQLIIHQ-----RTHTGE 36


>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
          Finger Protein 278
          Length = 54

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI 87
          KPY C  CG  F++  HL  H K    +VHT E+PH C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIK----QVHTSERPHKCQV 46



 Score = 35.0 bits (79), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 20 RPYQCEVCEKTFARHSTLWNH-RRIHTGEKPYRCSI 54
          +PY C+ C K F+R   L  H +++HT E+P++C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46



 Score = 26.6 bits (57), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)

Query: 3  FSQSPHLKNH-ERIHSGERPYQCEV 26
          FS+  HL  H +++H+ ERP++C+V
Sbjct: 22 FSRPDHLNGHIKQVHTSERPHKCQV 46


>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
          Length = 92

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 27  CEKTFARHSTLWNHRRIHTGEKPYRC--SICGSAFNQATHLKNHAKVGKCKVHTGEKPHH 84
           C   + ++  L  H   HTGEKP+ C    C   F    HL  H+       HTGEK   
Sbjct: 11  CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-----LTHTGEKNFT 65

Query: 85  CDI--CDVGFSDKFALKRH 101
           CD   CD+ F+ K  +K+H
Sbjct: 66  CDSDGCDLRFTTKANMKKH 84



 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 9  LKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFNQATH 64
          L+ H   H+GE+P+ C  E CEK F     L  H   HTGEK + C    C   F    +
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 80

Query: 65 LKNH 68
          +K H
Sbjct: 81 MKKH 84



 Score = 34.3 bits (77), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 9/62 (14%)

Query: 48  KPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHHC--DICDVGFSDKFALKRHRL 103
           K Y CS   CG+A+N+   L+ H        HTGEKP  C  + C+ GF+    L RH L
Sbjct: 2   KRYICSFADCGAAYNKNWKLQAHLSK-----HTGEKPFPCKEEGCEKGFTSLHHLTRHSL 56

Query: 104 IH 105
            H
Sbjct: 57  TH 58


>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
          Human Zinc Finger Protein 224
          Length = 46

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++C  C K F+R S L  H ++HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP++C  CG  F++ + L  H      K+HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHH-----KLHTGEKP 40


>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          584- 616) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP++C  CG AF Q  HL +H      ++HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASH-----LRIHTGEKP 40



 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++C+ C K F ++  L +H RIHTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 26.9 bits (58), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F Q+ HL +H RIH+GE+P
Sbjct: 22 FRQNIHLASHLRIHTGEKP 40


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 19/31 (61%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          SG++PY C  C K F   S L  H RIHTGE
Sbjct: 6  SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36



 Score = 30.4 bits (67), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
          +G+KPY C+ CG AF   + L  H      ++HTGE
Sbjct: 6  SGQKPYVCNECGKAFGLKSQLIIHE-----RIHTGE 36


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          ER Y+C  C K F + STL  H+RIH GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 30.0 bits (66), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          E+ Y CS CG AF Q + L  H      ++H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQ-----RIHRGEKP 40


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 19/33 (57%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          SG +PY C  C K F   S L  H R HTGEKP
Sbjct: 6  SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 34.7 bits (78), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          +G KPY CS CG AF   ++L  H      + HTGEKP
Sbjct: 6  SGVKPYGCSECGKAFRSKSYLIIHM-----RTHTGEKP 38


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 42

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          SGE PY+C  C K F R   L +H+R H GE
Sbjct: 6  SGENPYECSECGKAFNRKDQLISHQRTHAGE 36



 Score = 32.7 bits (73), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
          +GE PY CS CG AFN+   L +H      + H GE
Sbjct: 6  SGENPYECSECGKAFNRKDQLISHQ-----RTHAGE 36


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY C+ C K+F   S L  H+R+H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40



 Score = 32.3 bits (72), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C  CG +F  A+ L  H      +VH+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQ-----RVHSGEKP 40


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++C  C K+F+ +S L  H+RIHTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40



 Score = 27.7 bits (60), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP+ C  CG +F+  + L  H      ++HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQ-----RIHTGENP 40


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          ++C  C K F R STL  H++IHTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40



 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)

Query: 50 YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          + C+ CG AF + + L  H      K+HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQ-----KIHTGEKP 40


>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 41

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          SG+R Y+C+ C K+F +  +L  H RIHTG  P
Sbjct: 6  SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38



 Score = 26.9 bits (58), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          +G++ Y C  CG +F Q   L  H      ++HTG  P
Sbjct: 6  SGQRVYECQECGKSFRQKGSLTLHE-----RIHTGSGP 38


>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          395- 427) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++CE C K F  +S  ++H+R H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40



 Score = 26.9 bits (58), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP++C  CG  F   +   +H      + H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQ-----RSHSGEKP 40


>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          696- 728) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F  +S+   H+R+HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40



 Score = 30.8 bits (68), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C  CG AF   +    H      ++HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQ-----RLHTGQRP 40


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
          Zinc Finger Protein 32
          Length = 42

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C+ C K F++  +L  H R+HTG  P
Sbjct: 9  EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39



 Score = 35.4 bits (80), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPYRC  CG AF+Q   L  H      +VHTG  P
Sbjct: 9  EKPYRCDQCGKAFSQKGSLIVHI-----RVHTGSGP 39



 Score = 27.3 bits (59), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIHEKYARNS 112
           EKP+ CD C   FS K +L  H  +H     +S
Sbjct: 9   EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E PY+C  C K F+R   L +H+R H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40



 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          E PY C  CG AF++   L +H      + H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQ-----RTHAGEKP 40


>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          339- 371) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+CE C K F     L+ H  +HTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40



 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C  CG  F     L  H       VHTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHH-----MVHTGEKP 40


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C+VC K F   S L  H  +H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40



 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C +CG AF  ++HL  H       VH+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHH-----SVHSGERP 40


>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          273- 303) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          SGE+P+ C  CEK F+  S L  H++ H  EKP
Sbjct: 6  SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38



 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          +GEKP+ CS C  AF+  ++L  H      + H  EKP
Sbjct: 6  SGEKPFGCSCCEKAFSSKSYLLVHQ-----QTHAEEKP 38



 Score = 26.6 bits (57), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 78  TGEKPHHCDICDVGFSDKFALKRHRLIH 105
           +GEKP  C  C+  FS K  L  H+  H
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTH 33


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 14 RIHSGERPYQCEVCEKTFARHSTLWNH-RRIHTGE---KPYRCSICGSAFNQATHLKNHA 69
          R H+GE+PY C  C+KTF +   L  H +R H        + CS CG  F +   +  HA
Sbjct: 8  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67



 Score = 32.3 bits (72), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 16/29 (55%)

Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAK 70
          R HTGEKPY CS C   F Q   L  H K
Sbjct: 8  RTHTGEKPYACSHCDKTFRQKQLLDMHFK 36



 Score = 27.7 bits (60), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 75  KVHTGEKPHHCDICDVGFSDKFALKRH 101
           + HTGEKP+ C  CD  F  K  L  H
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMH 34


>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          341- 373) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          ER ++C  C K F + S    HRRIHTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40



 Score = 32.0 bits (71), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          E+ +RCS CG  F QA++   H      ++HTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHR-----RIHTGEKP 40


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY C  C K F+  S L  H R H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 34.3 bits (77), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY CS CG AF+  ++L  H      + H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHM-----RTHSGEKP 40


>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          283- 315) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 37.7 bits (86), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P++C++C K+F   S L  H  +HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40



 Score = 33.1 bits (74), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKP++C ICG +F   + L  H+      VHT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHS-----MVHTAEKP 40



 Score = 30.4 bits (67), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP  CDIC   F  +  L RH ++H
Sbjct: 10  EKPFKCDICGKSFCGRSRLNRHSMVH 35


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 37.7 bits (86), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          E+PY+C  C K F R+S L  H+R H+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38



 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
          EKPY CS CG AF + + L  H      + H+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQ-----RTHSGE 38


>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          626- 654) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 37.4 bits (85), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY CE+C   F    TL +H RIHTG  P
Sbjct: 9  EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39



 Score = 33.5 bits (75), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C ICG+ F     LK+H      ++HTG  P
Sbjct: 9  EKPYPCEICGTRFRHLQTLKSHL-----RIHTGSGP 39


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 37.4 bits (85), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          E+PY+C  C+K F   S L  H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38



 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
          EKPY C+ C  AFN  ++L  H      + HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQ-----RTHTGE 38


>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 224
          Length = 46

 Score = 37.4 bits (85), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+ Y C+ C K+F+R   L  H R+H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40



 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          FS++P L  HER+HSGE+P
Sbjct: 22 FSRAPCLLKHERLHSGEKP 40



 Score = 27.7 bits (60), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EK Y C  CG +F++A  L  H      ++H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHE-----RLHSGEKP 40


>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 46

 Score = 37.0 bits (84), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          +PY C  C KTF+  S L  H+R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          E+PY+CE C K + R   L  H+R+H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39



 Score = 32.0 bits (71), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          EKPY+C  CG  +N+  +L  H      +VH GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQ-----RVHMGEK 39


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 36.6 bits (83), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+CE C K +     L  H+++HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 35.8 bits (81), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C  CG  +N   +L  H      KVHTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQ-----KVHTGERP 40



 Score = 30.0 bits (66), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 80  EKPHHCDICDVGFSDKFALKRHRLIH 105
           EKP+ C+ C  G++ KF L  H+ +H
Sbjct: 10  EKPYKCEKCGKGYNSKFNLDMHQKVH 35


>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
          Suppressor Protein (Wt1) Finger 3
          Length = 29

 Score = 36.6 bits (83), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          +P+QC+ C++ F+R   L  H R HTGEK
Sbjct: 1  KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 31.2 bits (69), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)

Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          KP++C  C   F+++ HLK H      + HTGEK
Sbjct: 1  KPFQCKTCQRKFSRSDHLKTHT-----RTHTGEK 29



 Score = 27.7 bits (60), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 3  FSQSPHLKNHERIHSGER 20
          FS+S HLK H R H+GE+
Sbjct: 12 FSRSDHLKTHTRTHTGEK 29


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 36.6 bits (83), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+C  C K F   S+L  H+  H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40



 Score = 31.6 bits (70), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C+ CG AF   + L  H        H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQ-----ATHSGEKP 40


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 36.2 bits (82), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          ++PY+C+ C KTF +   L  H+R+HTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39



 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          +KPY C  C   F Q  HL  H      +VHTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHK-----RVHTGER 39


>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          284- 316) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 36.2 bits (82), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          E+PY+C  C K F   S L  H+ IHTGEK
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39



 Score = 31.6 bits (70), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          T EKPY+C  CG AF   ++L  H       +HTGEK
Sbjct: 8  TKEKPYKCYECGKAFRTRSNLTTHQ-----VIHTGEK 39


>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          598- 626) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 36.2 bits (82), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY+C  CG+ F Q  HL+ H       +HTG  P
Sbjct: 9  EKPYKCETCGARFVQVAHLRAHV-----LIHTGSGP 39



 Score = 33.5 bits (75), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY+CE C   F + + L  H  IHTG  P
Sbjct: 9  EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39


>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          484- 512) Of Human Zinc Finger Protein 473
          Length = 42

 Score = 36.2 bits (82), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 22/29 (75%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHT 45
          SGE+PY C  C++TF+ ++ L  H+++HT
Sbjct: 6  SGEKPYSCAECKETFSDNNRLVQHQKMHT 34



 Score = 27.7 bits (60), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 78  TGEKPHHCDICDVGFSDKFALKRHRLIH 105
           +GEKP+ C  C   FSD   L +H+ +H
Sbjct: 6   SGEKPYSCAECKETFSDNNRLVQHQKMH 33


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.8 bits (81), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+PY C  C K F   S L  H++IHT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40



 Score = 30.4 bits (67), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EKPY C+ CG AF   ++L  H      K+HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQ-----KIHTKQKP 40


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.4 bits (80), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          E+PY+C  C K F R S L  H++ HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39



 Score = 31.2 bits (69), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          EKPY+CS CG AF + + L  H      + HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQ-----QSHTGER 39


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 35.4 bits (80), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          ++P++C  C K+F     L  H+RIHTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 28.1 bits (61), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          +KP+ C+ CG +F    +L  H      ++HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQ-----RIHTGEK 39


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.4 bits (80), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E P+ C  C K F   + L  H++IHTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40



 Score = 32.0 bits (71), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          E P+ CS CG  F   T+L  H      K+HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQ-----KIHTGERP 40


>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 46

 Score = 35.4 bits (80), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 21 PYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          PY+C  CEK+F+    L  H+R+HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40


>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          423- 455) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 35.4 bits (80), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          E+PY+C  C K + R   L  H+R+HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39



 Score = 30.0 bits (66), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          EKPY+C  CG  + +   L  H      +VHTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQ-----RVHTGEK 39


>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
          Cys2His2 Zinc Finger From The Human Enhancer Binding
          Protein Mbp-1
          Length = 57

 Score = 35.4 bits (80), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%)

Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAK 70
          Y CE C     + S L  H R HT  +PY C+ C  +F    +L  H K
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50



 Score = 32.3 bits (72), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 50  YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRH 101
           Y C  CG    + + LK H +      HT  +P+HC  C+  F  K  L +H
Sbjct: 2   YICEECGIRXKKPSMLKKHIRT-----HTDVRPYHCTYCNFSFKTKGNLTKH 48



 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 9  LKNHERIHSGERPYQCEVCEKTFARHSTLWNHRR 42
          LK H R H+  RPY C  C  +F     L  H +
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 35.0 bits (79), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          ERP++C  C K F R S L  H R+H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39



 Score = 30.0 bits (66), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKV 71
          E+P++C+ CG  F + +HL  H ++
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRL 34


>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          441- 469) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 35.0 bits (79), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTG 46
          SGE+PY C  C K F   S L  H+ IHTG
Sbjct: 6  SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35



 Score = 31.2 bits (69), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
          +GEKPY CS CG AF   + L  H       +HTG
Sbjct: 6  SGEKPYVCSDCGKAFTFKSQLIVHQ-----GIHTG 35


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 35.0 bits (79), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E P++C  C KTF+  + L  H+ IH GE P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40



 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          T E P++C+ CG  F+ + HL  H       +H GE P
Sbjct: 8  TKEHPFKCNECGKTFSHSAHLSKHQ-----LIHAGENP 40


>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 42

 Score = 35.0 bits (79), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          SGE+ ++C  C K F+  S L  H+RIHTGE
Sbjct: 6  SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36


>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
          Length = 29

 Score = 34.7 bits (78), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          +P QC +C K F + S+L  H R HTGEK
Sbjct: 1  KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29



 Score = 31.6 bits (70), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)

Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          KP +C +CG AF QA+ L  H      + HTGEK
Sbjct: 1  KPCQCVMCGKAFTQASSLIAHV-----RQHTGEK 29


>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
           Transcriptional Repressor Ctcf Protein
          Length = 77

 Score = 34.3 bits (77), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 42  RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHT-GEKPHHCDICDVGFSDKFALKR 100
           R H+GEKPY C IC + F Q+  +K H      + HT      HC  CD   + K  L  
Sbjct: 8   RTHSGEKPYECYICHARFTQSGTMKMHI----LQKHTENVAKFHCPHCDTVIARKSDLGV 63

Query: 101 HRLIHEKYARNST 113
           H      Y+  S+
Sbjct: 64  HLRKQHSYSGPSS 76



 Score = 32.7 bits (73), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 14 RIHSGERPYQCEVCEKTFARHSTLWNH 40
          R HSGE+PY+C +C   F +  T+  H
Sbjct: 8  RTHSGEKPYECYICHARFTQSGTMKMH 34


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 34.3 bits (77), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKV 71
          EKPY C++CG AF  + HL  H +V
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRV 34



 Score = 33.5 bits (75), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          E+PY C VC K F   + L  H R+HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38


>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          768- 800) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 33.5 bits (75), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          + +QC  C + F   S L  H+RIHTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40



 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          K ++C  CG  F   +HL  H      ++HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQ-----RIHTGEKP 40



 Score = 26.9 bits (58), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 3  FSQSPHLKNHERIHSGERP 21
          F+   HL  H+RIH+GE+P
Sbjct: 22 FTLKSHLNQHQRIHTGEKP 40


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 33.5 bits (75), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 17/30 (56%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          ERPY C  C K F RHS L  H + H  EK
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39



 Score = 27.3 bits (59), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAK 70
          E+PY C+ CG  F + +HL  H K
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLK 33


>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
          Rrna 55mer (Nmr Structure)
          Length = 87

 Score = 33.1 bits (74), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 3  FSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTG---EKPYRCSICGS 57
          F +   LK H+  H+ + PY+C  E C+K F+  S L  H ++H G   +K   CS  G 
Sbjct: 13 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 72

Query: 58 AFN 60
           + 
Sbjct: 73 TWT 75



 Score = 32.3 bits (72), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 25 EVCEKTFARHSTLWNHRRIHTGEKPYRC--SICGSAFNQATHLKNHAKV 71
          E C K F +H+ L  H+  HT + PY C    C   F+  + LK H KV
Sbjct: 7  ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55



 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 55  CGSAFNQATHLKNHAKVGKCKVHTGEKPHHC--DICDVGFSDKFALKRHRLIHEKY 108
           CG AF +   LK H        HT + P+ C  + CD  FS    LKRH  +H  Y
Sbjct: 9   CGKAFKKHNQLKVHQFS-----HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59


>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
          The Free Structure With Those In Nucleic-Acid Complexes
          Length = 85

 Score = 33.1 bits (74), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 3  FSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTG---EKPYRCSICGS 57
          F +   LK H+  H+ + PY+C  E C+K F+  S L  H ++H G   +K   CS  G 
Sbjct: 13 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 72

Query: 58 AFN 60
           + 
Sbjct: 73 TWT 75



 Score = 32.0 bits (71), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 25 EVCEKTFARHSTLWNHRRIHTGEKPYRC--SICGSAFNQATHLKNHAKV 71
          E C K F +H+ L  H+  HT + PY C    C   F+  + LK H KV
Sbjct: 7  ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55



 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 55  CGSAFNQATHLKNHAKVGKCKVHTGEKPHHC--DICDVGFSDKFALKRHRLIHEKY 108
           CG AF +   LK H        HT + P+ C  + CD  FS    LKRH  +H  Y
Sbjct: 9   CGKAFKKHNQLKVHQFS-----HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59


>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 47

 Score = 32.3 bits (72), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          +KPY C  CG AF Q T L  H +      HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRY----YHTGEKP 41



 Score = 32.0 bits (71), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 19 ERPYQCEVCEKTFARHSTLWNH-RRIHTGEKP 49
          ++PY+C  C K F ++++L  H R  HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41


>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          355- 385) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 32.3 bits (72), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          E PY+C  C K F+R   L +H++ H+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.0 bits (71), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          E+PY+C  C K+F   S L  H++ HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39



 Score = 31.6 bits (70), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
          EKPY+CS CG +F   + L+ H      K HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQ-----KCHTGER 39


>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
          Zinc Finger Protein
          Length = 28

 Score = 32.0 bits (71), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTG 46
          RPY C VC K F+    +  H R+HTG
Sbjct: 2  RPYSCSVCGKRFSLKHQMETHYRVHTG 28



 Score = 26.9 bits (58), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)

Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
          +PY CS+CG  F+    ++ H      +VHTG
Sbjct: 2  RPYSCSVCGKRFSLKHQMETHY-----RVHTG 28


>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
          Length = 30

 Score = 32.0 bits (71), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          +PY C  C++ FA    L  H RIHTGEK
Sbjct: 2  KPYVCIHCQRQFADPGALQRHVRIHTGEK 30


>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
          Implications For Dna Binding
          Length = 29

 Score = 31.6 bits (70), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEK 48
          + CEVC + FAR   L  H R HT EK
Sbjct: 3  FVCEVCTRAFARQEALKRHYRSHTNEK 29


>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 31.6 bits (70), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+ ++C  C+  F++ S+L  H+ +H GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40



 Score = 28.1 bits (61), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          EK ++C  C   F+QA+ L+ H       VH GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQ-----NVHVGEKP 40



 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 1  MLFSQSPHLKNHERIHSGERP 21
          M FSQ+  L+ H+ +H GE+P
Sbjct: 20 MCFSQASSLRLHQNVHVGEKP 40


>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb
 pdb|3DXY|A Chain A, Crystal Structure Of Ectrmb In Complex With Sam
 pdb|3DXZ|A Chain A, Crystal Structure Of Ectrmb In Complex With Sah
          Length = 218

 Score = 31.2 bits (69), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 145 RLIFEAWAKLQKELLSQSGYPYHKLQSWRLSSEYRLDALCSINTIKLCRKENQSVTRPC 203
           R++   +A+L K  L Q G  +H    W   +E+ L+ + SI+  K   + N  V RP 
Sbjct: 126 RIVQVPFAELVKSKL-QLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPA 183


>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
          Zinc Finger Protein 278
          Length = 45

 Score = 31.2 bits (69), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTG 46
          SGE+PY C VC   F R   +  H R H G
Sbjct: 6  SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35



 Score = 28.9 bits (63), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAK 70
          +GEKPY C +CG  F +   +  H +
Sbjct: 6  SGEKPYSCPVCGLRFKRKDRMSYHVR 31


>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
          Implications For Dna Binding
          Length = 29

 Score = 30.8 bits (68), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEK 48
          + CEVC + FAR   L  H R HT EK
Sbjct: 3  FVCEVCTRAFARQEYLKRHYRSHTNEK 29


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 30.8 bits (68), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 15/28 (53%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          +PY C  C K F   S L  H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38



 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
          KPY C+ CG AF   ++L  H      + HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHT-----RTHTGE 38


>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 44

 Score = 30.4 bits (67), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTG 46
          E+PY+C  C K F   S L  H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37


>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
          Implications For Dna Binding
          Length = 29

 Score = 30.4 bits (67), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 21 PYQCEVCEKTFARHSTLWNHRRIHTGEK 48
           + CEVC + FAR   L  H R HT EK
Sbjct: 2  SFVCEVCTRAFARQEHLKRHYRSHTNEK 29


>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
          Factor Sp1f2, Minimized Average Structure
 pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
          Binding Domain (Zinc Finger 2)
          Length = 31

 Score = 30.0 bits (66), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 20 RPYQC--EVCEKTFARHSTLWNHRRIHTGEK 48
          RP+ C    C K F R   L  H+R HTGEK
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
          Of Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 30.0 bits (66), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 9  LKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
          L+ HERIH  +RP++C  C     + S L  H +   G+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63



 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 35 STLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAK 70
          + L  H RIH  ++P++C+ C     Q ++L  H K
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58


>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
          Length = 29

 Score = 30.0 bits (66), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 21 PYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          P +C  C K F     L  H RIH+GEK
Sbjct: 2  PLKCRECGKQFTTSGNLKRHLRIHSGEK 29


>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          557- 589) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 30.0 bits (66), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHT 45
          E+ ++C  CEKTF+    L  H RIHT
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHT 36


>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          204- 236) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          +PYQC  C K+F+    L  H   HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40



 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
          KPY+CS CG +F+ +  L  H        HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHW-----ITHTREKP 40


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          S  + + CE C K F    +L  H RIHT EK
Sbjct: 5  SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36


>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          171- 203) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          E+ + C+ C K F   S L  H+R+H GEK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39


>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
          Zinc Finger Protein 278
          Length = 48

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 24 CEVCEKTFARHSTLWNHRRIHTGEKPY 50
          CE+C K F     L  H+  H+GEKPY
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41


>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
          Fog-1
          Length = 35

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHT 45
          SG+RP+ C +C   F   +    H ++HT
Sbjct: 3  SGKRPFVCRICLSAFTTKANCARHLKVHT 31



 Score = 26.9 bits (58), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKV 71
          +G++P+ C IC SAF    +   H KV
Sbjct: 3  SGKRPFVCRICLSAFTTKANCARHLKV 29


>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
          Length = 37

 Score = 28.9 bits (63), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 14 RIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
          R  +G +P+QC  C+++F+R   L  HR+ H
Sbjct: 4  RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34



 Score = 26.9 bits (58), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAK 70
          R  TG KP++C  C  +F+++ HL  H K
Sbjct: 4  RGSTGIKPFQCPDCDRSFSRSDHLALHRK 32


>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
          Reveals An Extension To The Rules For Zinc-FingerDNA
          RECOGNITION
 pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
          Reveals An Extension To The Rules For Zinc-FingerDNA
          RECOGNITION
          Length = 66

 Score = 28.9 bits (63), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 18 GERPYQCEVCEKT------FARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKV 71
          GE  Y+C+VC +       F RH    + R +    K Y C  C   F +  ++  H K+
Sbjct: 7  GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV----KVYPCPFCFKEFTRKDNMTAHVKI 62


>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
          Finger Dna-Binding Domain
          Length = 27

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 22 YQCEVCEKTFARHSTLWNHRRIH 44
          Y+C +CE++F   S L  H+R+H
Sbjct: 2  YKCGLCERSFVEKSALSRHQRVH 24


>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          S  +PY+C  C    A  + L  H R HTGEK
Sbjct: 5  SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36


>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
          Domains Of Zinc Finger Protein 692
          Length = 79

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 17 SGERPYQCEV--CEKTFARHSTLWNHRRI-HTGEKPYRCS--ICGSAFNQATHLKNHAKV 71
          SG     C+   C + F+    L +H++  H  +K + C    CG +FN   HLK H K+
Sbjct: 3  SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62


>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
          Length = 26

 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIH 44
          +PY CE C K F + S L NH R H
Sbjct: 1  KPYVCERCGKRFVQSSQLANHIRHH 25



 Score = 27.7 bits (60), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 48 KPYRCSICGSAFNQATHLKNHAK 70
          KPY C  CG  F Q++ L NH +
Sbjct: 1  KPYVCERCGKRFVQSSQLANHIR 23


>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
          Length = 33

 Score = 27.7 bits (60), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIH 44
          +G +P+QC  C+ +F+R   L  HR+ H
Sbjct: 3  TGIKPFQCPDCDWSFSRSDHLALHRKRH 30



 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 45 TGEKPYRCSICGSAFNQATHLKNHAK 70
          TG KP++C  C  +F+++ HL  H K
Sbjct: 3  TGIKPFQCPDCDWSFSRSDHLALHRK 28


>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
          Ligase Complex
          Length = 97

 Score = 27.7 bits (60), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 52 CSICGSAFNQATHLKN--HAKVGKCKVHTGEKPHHCDICDV 90
          C +CG  F  AT +    H+    C V   E   +C ICDV
Sbjct: 14 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDV 54


>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 27.7 bits (60), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 81  KPHHCDICDVGFSDKFALKRHRLIH 105
           K H CD+C   F  K  LK H+L+H
Sbjct: 8   KTHLCDMCGKKFKSKGTLKSHKLLH 32


>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
          Protein Zfy: 2d Nmr Structure Of An Even Finger And
          Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRI-HTGEK 48
          + YQC+ CEK FA  S L  H +  H+ EK
Sbjct: 1  KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30


>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
          Length = 108

 Score = 27.3 bits (59), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 52 CSICGSAFNQATHLKN--HAKVGKCKVHTGEKPHHCDICDV 90
          C +CG  F  AT +    H+    C V   E   +C ICDV
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDV 58


>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
          Length = 117

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 52 CSICGSAFNQATHLKN--HAKVGKCKVHTGEKPHHCDICDV 90
          C +CG  F  AT +    H+    C V   E   +C ICDV
Sbjct: 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDV 58


>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
          Domain From Human Krueppel-Like Factor 15
          Length = 48

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 19 ERPYQC--EVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P+ C    C   F+R   L  HRR H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42


>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          656- 688) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 26.9 bits (58), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          E+ +QC  C + F ++ +L  H+ +H G+K
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39


>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
          Zinc Finger Protein 473
          Length = 44

 Score = 26.9 bits (58), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHT 45
          E P++C  C++ F + + L  H R H 
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36


>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
          Length = 30

 Score = 26.9 bits (58), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
          +PYQC+ C ++F+  ++   H   H  +K
Sbjct: 2  KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30


>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          796- 828) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 26.6 bits (57), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
          E+P+QC+ C   F+   +L+ H R H    P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.132    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,797,637
Number of Sequences: 62578
Number of extensions: 197954
Number of successful extensions: 1141
Number of sequences better than 100.0: 196
Number of HSP's better than 100.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 633
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)