Query psy2103
Match_columns 203
No_of_seqs 157 out of 1916
Neff 9.8
Searched_HMMs 46136
Date Sat Aug 17 00:22:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462|consensus 99.9 4.1E-26 8.8E-31 170.9 7.9 127 1-162 138-267 (279)
2 KOG2462|consensus 99.9 1.1E-22 2.3E-27 152.7 3.5 98 1-105 169-266 (279)
3 KOG1074|consensus 99.7 2.7E-19 5.9E-24 151.0 -0.1 88 50-166 606-696 (958)
4 KOG3576|consensus 99.7 5E-19 1.1E-23 127.2 -0.0 126 18-165 114-239 (267)
5 KOG3608|consensus 99.7 2.5E-17 5.3E-22 127.4 6.4 131 1-164 245-378 (467)
6 KOG3608|consensus 99.7 1.1E-16 2.3E-21 123.9 8.4 152 1-162 187-345 (467)
7 KOG1074|consensus 99.7 3.3E-17 7.2E-22 138.6 4.0 104 2-105 614-732 (958)
8 KOG3576|consensus 99.6 9.2E-16 2E-20 110.5 1.7 108 1-108 125-238 (267)
9 KOG3623|consensus 99.4 2.9E-14 6.3E-19 119.5 2.4 80 19-103 892-971 (1007)
10 KOG3623|consensus 99.4 1.6E-13 3.4E-18 115.1 5.4 96 7-107 224-334 (1007)
11 KOG3993|consensus 99.2 3.1E-12 6.8E-17 101.5 2.4 86 22-107 268-381 (500)
12 PHA00733 hypothetical protein 99.2 1.8E-11 4E-16 84.5 4.0 94 8-108 27-125 (128)
13 PHA00733 hypothetical protein 99.1 5.9E-11 1.3E-15 82.0 3.0 87 46-164 37-125 (128)
14 PHA02768 hypothetical protein; 99.0 2.3E-10 5E-15 65.9 1.6 43 22-66 6-48 (55)
15 PLN03086 PRLI-interacting fact 98.9 1.8E-09 4E-14 90.8 5.8 101 20-160 452-562 (567)
16 PLN03086 PRLI-interacting fact 98.9 3.6E-09 7.8E-14 89.0 6.7 93 2-106 462-564 (567)
17 PF13465 zf-H2C2_2: Zinc-finge 98.9 1.9E-09 4E-14 53.2 2.6 25 8-32 1-25 (26)
18 KOG3993|consensus 98.8 2.1E-09 4.6E-14 85.7 2.8 114 50-168 268-386 (500)
19 PHA02768 hypothetical protein; 98.7 6.9E-09 1.5E-13 59.8 1.4 44 49-99 5-48 (55)
20 PF13465 zf-H2C2_2: Zinc-finge 98.7 1.3E-08 2.8E-13 50.2 2.1 26 36-61 1-26 (26)
21 PHA00616 hypothetical protein 98.5 3.8E-08 8.2E-13 54.0 1.6 34 21-54 1-34 (44)
22 PHA00732 hypothetical protein 98.3 3.2E-07 7E-12 57.8 1.9 45 21-70 1-45 (79)
23 PHA00616 hypothetical protein 98.2 9.8E-07 2.1E-11 48.5 2.7 30 138-167 1-30 (44)
24 PF05605 zf-Di19: Drought indu 98.2 1.9E-06 4E-11 50.4 3.3 50 50-106 3-53 (54)
25 PF00096 zf-C2H2: Zinc finger, 98.1 2.2E-06 4.8E-11 40.8 2.2 23 22-44 1-23 (23)
26 PF05605 zf-Di19: Drought indu 98.1 7.4E-06 1.6E-10 47.8 4.4 53 82-163 2-54 (54)
27 PF00096 zf-C2H2: Zinc finger, 98.0 1E-06 2.2E-11 42.0 0.1 23 139-161 1-23 (23)
28 PF12756 zf-C2H2_2: C2H2 type 98.0 1.7E-06 3.7E-11 57.1 0.9 73 84-161 1-73 (100)
29 PF12756 zf-C2H2_2: C2H2 type 98.0 4.3E-06 9.2E-11 55.2 2.4 74 23-106 1-74 (100)
30 PHA00732 hypothetical protein 97.9 5.9E-06 1.3E-10 52.1 2.2 47 49-105 1-47 (79)
31 PF13894 zf-C2H2_4: C2H2-type 97.9 9E-06 1.9E-10 38.8 2.4 24 22-45 1-24 (24)
32 COG5189 SFP1 Putative transcri 97.9 3.2E-06 6.8E-11 65.6 1.1 57 47-103 347-419 (423)
33 PF13912 zf-C2H2_6: C2H2-type 97.8 1E-05 2.3E-10 40.0 1.4 25 21-45 1-25 (27)
34 PF13894 zf-C2H2_4: C2H2-type 97.7 2.7E-05 5.8E-10 37.1 2.0 24 83-106 1-24 (24)
35 COG5189 SFP1 Putative transcri 97.7 1.7E-05 3.6E-10 61.7 1.6 53 18-70 346-419 (423)
36 PF13912 zf-C2H2_6: C2H2-type 97.7 1E-05 2.2E-10 40.0 0.2 26 138-163 1-26 (27)
37 KOG1146|consensus 97.6 5.2E-05 1.1E-09 68.9 3.2 135 18-161 462-612 (1406)
38 PF09237 GAGA: GAGA factor; I 97.4 0.0001 2.2E-09 41.4 1.5 32 18-49 21-52 (54)
39 smart00355 ZnF_C2H2 zinc finge 97.1 0.00026 5.7E-09 34.1 1.4 24 139-162 1-24 (26)
40 smart00355 ZnF_C2H2 zinc finge 97.1 0.00035 7.5E-09 33.6 1.8 24 22-45 1-24 (26)
41 PF12874 zf-met: Zinc-finger o 97.1 0.00031 6.7E-09 33.9 1.3 22 22-43 1-22 (25)
42 PF13909 zf-H2C2_5: C2H2-type 97.0 0.0006 1.3E-08 32.5 2.0 23 22-45 1-23 (24)
43 PF12874 zf-met: Zinc-finger o 97.0 0.00016 3.5E-09 34.9 -0.1 23 139-161 1-23 (25)
44 PF13909 zf-H2C2_5: C2H2-type 96.9 0.00097 2.1E-08 31.8 2.2 23 83-106 1-23 (24)
45 PF09237 GAGA: GAGA factor; I 96.7 0.0016 3.5E-08 36.7 2.5 32 78-109 20-51 (54)
46 PRK04860 hypothetical protein; 96.7 0.0012 2.5E-08 47.5 2.1 36 49-93 119-154 (160)
47 KOG4173|consensus 96.6 0.00057 1.2E-08 50.1 0.3 90 20-112 78-176 (253)
48 KOG2231|consensus 96.4 0.0036 7.7E-08 54.3 4.0 79 22-106 100-206 (669)
49 KOG1146|consensus 96.4 0.0012 2.6E-08 60.5 1.0 102 52-160 439-540 (1406)
50 PF12171 zf-C2H2_jaz: Zinc-fin 96.4 0.00069 1.5E-08 33.4 -0.4 20 22-41 2-21 (27)
51 PF12171 zf-C2H2_jaz: Zinc-fin 96.1 0.003 6.5E-08 31.0 1.0 21 50-70 2-22 (27)
52 KOG2482|consensus 96.0 0.0081 1.8E-07 47.6 3.7 153 7-161 129-357 (423)
53 COG5236 Uncharacterized conser 95.9 0.012 2.6E-07 46.7 4.3 80 21-107 151-245 (493)
54 PF13913 zf-C2HC_2: zinc-finge 95.4 0.012 2.6E-07 28.3 1.7 20 22-42 3-22 (25)
55 PF12013 DUF3505: Protein of u 95.4 0.047 1E-06 36.6 5.1 27 137-163 79-109 (109)
56 COG5236 Uncharacterized conser 95.0 0.04 8.6E-07 43.9 4.4 90 6-108 201-307 (493)
57 COG5048 FOG: Zn-finger [Genera 94.9 0.0069 1.5E-07 50.0 -0.2 143 20-167 288-447 (467)
58 smart00451 ZnF_U1 U1-like zinc 94.6 0.014 3.1E-07 30.3 0.7 25 137-161 2-26 (35)
59 COG4049 Uncharacterized protei 94.6 0.029 6.3E-07 32.2 1.9 28 136-163 15-42 (65)
60 smart00451 ZnF_U1 U1-like zinc 94.5 0.027 5.9E-07 29.2 1.6 22 21-42 3-24 (35)
61 PRK04860 hypothetical protein; 94.5 0.022 4.7E-07 41.0 1.6 39 21-63 119-157 (160)
62 KOG2785|consensus 94.4 0.044 9.6E-07 44.2 3.4 62 139-200 167-234 (390)
63 PF13913 zf-C2HC_2: zinc-finge 94.4 0.049 1.1E-06 26.1 2.2 20 83-103 3-22 (25)
64 KOG2893|consensus 94.2 0.012 2.6E-07 44.3 -0.1 46 52-106 13-59 (341)
65 KOG2482|consensus 94.1 0.032 6.9E-07 44.3 2.0 85 22-106 196-358 (423)
66 KOG4173|consensus 93.8 0.048 1E-06 40.3 2.3 88 49-163 79-171 (253)
67 KOG2186|consensus 93.7 0.049 1.1E-06 41.5 2.2 47 21-70 3-49 (276)
68 COG4049 Uncharacterized protei 92.8 0.06 1.3E-06 30.9 1.2 33 76-108 11-43 (65)
69 cd00350 rubredoxin_like Rubred 92.0 0.09 1.9E-06 27.1 1.2 24 22-57 2-25 (33)
70 KOG2231|consensus 91.7 0.33 7.1E-06 42.6 4.8 93 3-106 124-236 (669)
71 PF12013 DUF3505: Protein of u 91.2 0.35 7.6E-06 32.3 3.7 87 20-107 10-109 (109)
72 KOG2893|consensus 89.9 0.11 2.4E-06 39.3 0.4 45 23-71 12-56 (341)
73 COG5048 FOG: Zn-finger [Genera 89.7 0.059 1.3E-06 44.5 -1.4 53 2-54 298-356 (467)
74 KOG4167|consensus 88.9 0.47 1E-05 41.7 3.4 30 136-165 790-819 (907)
75 PF13719 zinc_ribbon_5: zinc-r 88.2 0.34 7.3E-06 25.6 1.4 12 81-92 24-35 (37)
76 PF09538 FYDLN_acid: Protein o 88.1 0.33 7.1E-06 32.5 1.7 30 50-95 10-39 (108)
77 PF13717 zinc_ribbon_4: zinc-r 87.7 0.43 9.4E-06 25.1 1.6 12 81-92 24-35 (36)
78 KOG2785|consensus 87.3 0.55 1.2E-05 38.1 2.7 51 20-70 165-241 (390)
79 TIGR00373 conserved hypothetic 86.0 0.82 1.8E-05 32.8 2.9 30 20-58 108-137 (158)
80 PF09986 DUF2225: Uncharacteri 85.9 0.16 3.5E-06 38.4 -0.9 17 20-36 4-20 (214)
81 TIGR02098 MJ0042_CXXC MJ0042 f 85.7 0.5 1.1E-05 25.0 1.2 12 23-34 4-15 (38)
82 COG1592 Rubrerythrin [Energy p 84.0 0.72 1.6E-05 33.3 1.8 25 48-90 133-157 (166)
83 cd00729 rubredoxin_SM Rubredox 83.9 0.57 1.2E-05 24.3 0.9 25 21-57 2-26 (34)
84 PF09986 DUF2225: Uncharacteri 83.9 0.44 9.5E-06 36.1 0.7 48 48-95 4-61 (214)
85 smart00531 TFIIE Transcription 82.8 1.8 3.9E-05 30.7 3.4 12 49-60 99-110 (147)
86 PF05443 ROS_MUCR: ROS/MUCR tr 82.2 1.1 2.4E-05 31.1 2.1 23 22-47 73-95 (132)
87 KOG0717|consensus 81.7 3.3 7.2E-05 34.8 4.9 27 138-164 460-487 (508)
88 PRK06266 transcription initiat 81.4 1.3 2.8E-05 32.5 2.3 16 49-64 117-132 (178)
89 PF02892 zf-BED: BED zinc fing 81.3 1.4 3E-05 24.1 1.9 26 79-104 13-42 (45)
90 smart00659 RPOLCX RNA polymera 81.1 1.2 2.7E-05 24.5 1.6 27 21-58 2-28 (44)
91 PRK00398 rpoP DNA-directed RNA 80.2 0.71 1.5E-05 25.6 0.5 29 21-59 3-31 (46)
92 PF00301 Rubredoxin: Rubredoxi 80.0 0.91 2E-05 25.4 0.9 14 50-63 2-15 (47)
93 smart00531 TFIIE Transcription 79.5 2.4 5.1E-05 30.0 3.1 38 18-59 96-133 (147)
94 cd00730 rubredoxin Rubredoxin; 79.4 0.82 1.8E-05 26.0 0.6 12 50-61 2-13 (50)
95 COG5188 PRP9 Splicing factor 3 78.6 1.7 3.7E-05 35.0 2.3 24 137-160 373-397 (470)
96 TIGR02300 FYDLN_acid conserved 78.4 1.5 3.3E-05 30.0 1.7 32 50-97 10-41 (129)
97 TIGR02605 CxxC_CxxC_SSSS putat 78.0 0.67 1.5E-05 26.4 -0.1 12 22-33 6-17 (52)
98 KOG2071|consensus 77.8 1.8 3.9E-05 37.3 2.4 30 17-46 414-443 (579)
99 smart00834 CxxC_CXXC_SSSS Puta 77.8 0.69 1.5E-05 24.7 -0.1 12 22-33 6-17 (41)
100 PF09723 Zn-ribbon_8: Zinc rib 77.8 1.1 2.4E-05 24.4 0.8 12 50-61 6-17 (42)
101 KOG4167|consensus 77.1 0.75 1.6E-05 40.5 -0.1 26 20-45 791-816 (907)
102 TIGR00373 conserved hypothetic 77.1 2.6 5.7E-05 30.2 2.8 35 45-93 105-139 (158)
103 COG1996 RPC10 DNA-directed RNA 76.7 1.1 2.3E-05 25.3 0.5 29 20-58 5-33 (49)
104 smart00614 ZnF_BED BED zinc fi 76.6 2.4 5.2E-05 23.9 2.0 22 21-42 18-44 (50)
105 TIGR00622 ssl1 transcription f 76.2 3.6 7.7E-05 27.7 3.0 78 19-105 13-104 (112)
106 COG2888 Predicted Zn-ribbon RN 74.8 2.7 5.8E-05 24.7 1.8 32 49-90 27-58 (61)
107 COG4957 Predicted transcriptio 74.7 7.9 0.00017 26.8 4.4 36 137-175 75-111 (148)
108 PF15135 UPF0515: Uncharacteri 74.3 3.5 7.7E-05 31.6 2.8 16 137-152 154-169 (278)
109 PF04959 ARS2: Arsenite-resist 74.1 2.5 5.3E-05 32.0 2.0 29 79-107 74-102 (214)
110 KOG3408|consensus 74.1 10 0.00022 25.8 4.6 30 132-161 51-80 (129)
111 COG1773 Rubredoxin [Energy pro 72.8 2 4.3E-05 24.9 1.0 8 83-90 37-44 (55)
112 COG5151 SSL1 RNA polymerase II 72.4 11 0.00025 30.0 5.3 27 136-162 386-412 (421)
113 smart00734 ZnF_Rad18 Rad18-lik 72.3 4.4 9.6E-05 19.5 2.0 20 83-103 2-21 (26)
114 KOG2593|consensus 71.5 3.5 7.6E-05 34.3 2.5 38 45-90 124-161 (436)
115 COG1997 RPL43A Ribosomal prote 71.5 1.2 2.6E-05 28.3 -0.1 15 136-150 51-65 (89)
116 PF02176 zf-TRAF: TRAF-type zi 70.9 3.3 7.2E-05 24.0 1.7 40 20-60 8-53 (60)
117 KOG2186|consensus 70.9 3.3 7.1E-05 31.9 2.0 47 50-104 4-50 (276)
118 PRK06266 transcription initiat 70.8 4 8.6E-05 30.0 2.4 33 18-59 114-146 (178)
119 PRK00464 nrdR transcriptional 70.5 0.7 1.5E-05 33.0 -1.5 17 50-66 29-45 (154)
120 KOG4377|consensus 70.1 2.2 4.7E-05 35.2 1.0 138 22-165 272-430 (480)
121 COG4957 Predicted transcriptio 68.7 2.8 6E-05 29.0 1.1 23 22-47 77-99 (148)
122 PF05443 ROS_MUCR: ROS/MUCR tr 67.1 2.1 4.6E-05 29.7 0.3 37 136-175 70-107 (132)
123 PF04959 ARS2: Arsenite-resist 66.9 0.6 1.3E-05 35.2 -2.6 33 136-168 75-107 (214)
124 PF15269 zf-C2H2_7: Zinc-finge 66.0 4.4 9.5E-05 22.3 1.4 22 22-43 21-42 (54)
125 PRK14890 putative Zn-ribbon RN 65.7 3 6.5E-05 24.5 0.7 31 49-90 25-56 (59)
126 PF08274 PhnA_Zn_Ribbon: PhnA 64.6 3.3 7.1E-05 20.8 0.7 24 23-57 4-27 (30)
127 PF10571 UPF0547: Uncharacteri 62.2 4.6 9.9E-05 19.5 0.9 11 83-93 15-25 (26)
128 PF03604 DNA_RNApol_7kD: DNA d 60.9 7.7 0.00017 19.7 1.6 11 82-92 17-27 (32)
129 PF06524 NOA36: NOA36 protein; 59.5 1.7 3.7E-05 33.6 -1.3 95 45-161 138-232 (314)
130 KOG2071|consensus 58.4 14 0.00029 32.2 3.6 15 136-150 511-525 (579)
131 PF14353 CpXC: CpXC protein 58.0 1.2 2.6E-05 30.7 -2.2 21 49-69 38-58 (128)
132 PTZ00448 hypothetical protein; 58.0 3.4 7.4E-05 33.7 0.1 40 137-176 313-352 (373)
133 KOG4124|consensus 57.2 2.2 4.8E-05 34.4 -1.1 56 47-102 347-418 (442)
134 PF01780 Ribosomal_L37ae: Ribo 56.7 1.6 3.6E-05 28.0 -1.5 13 137-149 52-64 (90)
135 PRK03824 hypA hydrogenase nick 54.9 6.1 0.00013 27.6 0.9 14 49-62 70-83 (135)
136 KOG1842|consensus 54.7 14 0.0003 31.0 3.0 33 132-164 9-41 (505)
137 KOG3408|consensus 54.6 7.3 0.00016 26.5 1.2 29 77-105 52-80 (129)
138 PF01927 Mut7-C: Mut7-C RNAse 54.1 10 0.00022 26.8 1.9 53 50-102 92-144 (147)
139 PHA00626 hypothetical protein 53.7 8.2 0.00018 22.4 1.1 17 80-96 21-37 (59)
140 PTZ00255 60S ribosomal protein 52.2 3.3 7.1E-05 26.7 -0.7 14 137-150 53-66 (90)
141 KOG2593|consensus 51.6 15 0.00032 30.7 2.7 37 19-58 126-162 (436)
142 TIGR00280 L37a ribosomal prote 51.5 2.9 6.3E-05 26.9 -1.0 14 137-150 52-65 (91)
143 PF14446 Prok-RING_1: Prokaryo 50.8 7 0.00015 22.6 0.6 26 22-59 6-31 (54)
144 PF12760 Zn_Tnp_IS1595: Transp 50.3 15 0.00031 20.2 1.8 8 50-57 19-26 (46)
145 COG1655 Uncharacterized protei 50.1 4.3 9.3E-05 30.9 -0.5 41 18-58 16-71 (267)
146 COG3357 Predicted transcriptio 49.3 10 0.00022 24.4 1.1 14 48-61 57-70 (97)
147 PF05191 ADK_lid: Adenylate ki 48.7 9.9 0.00021 19.9 0.9 29 23-59 3-31 (36)
148 PF13878 zf-C2H2_3: zinc-finge 48.1 18 0.00038 19.5 1.9 24 22-45 14-39 (41)
149 PRK09678 DNA-binding transcrip 47.8 4.9 0.00011 24.8 -0.4 9 23-31 3-11 (72)
150 PRK00432 30S ribosomal protein 47.2 11 0.00024 21.3 1.0 10 82-91 37-46 (50)
151 PF08790 zf-LYAR: LYAR-type C2 46.9 5.4 0.00012 19.6 -0.3 19 50-69 1-19 (28)
152 PF09963 DUF2197: Uncharacteri 46.6 19 0.00041 21.0 1.9 41 22-62 3-44 (56)
153 PF07754 DUF1610: Domain of un 46.1 9.5 0.00021 18.0 0.5 10 81-90 15-24 (24)
154 PF09845 DUF2072: Zn-ribbon co 45.7 9.6 0.00021 26.3 0.7 14 21-34 1-14 (131)
155 KOG0696|consensus 45.1 8.2 0.00018 32.5 0.4 58 20-90 72-129 (683)
156 PRK03976 rpl37ae 50S ribosomal 44.8 4.1 8.9E-05 26.2 -1.1 14 137-150 53-66 (90)
157 COG4530 Uncharacterized protei 43.4 15 0.00033 24.5 1.3 27 51-93 11-37 (129)
158 COG1198 PriA Primosomal protei 42.5 10 0.00022 34.2 0.6 46 22-91 436-484 (730)
159 COG5112 UFD2 U1-like Zn-finger 42.1 41 0.00089 22.3 3.1 27 135-161 52-78 (126)
160 PF07649 C1_3: C1-like domain; 41.5 13 0.00028 18.3 0.6 10 49-58 15-24 (30)
161 PF13451 zf-trcl: Probable zin 41.2 13 0.00027 21.0 0.6 12 21-32 4-15 (49)
162 KOG1842|consensus 40.9 14 0.0003 31.0 1.0 21 50-70 16-36 (505)
163 COG3091 SprT Zn-dependent meta 40.2 14 0.0003 26.3 0.8 33 49-91 117-149 (156)
164 TIGR00100 hypA hydrogenase nic 40.2 14 0.0003 24.9 0.9 13 22-34 71-83 (115)
165 TIGR01206 lysW lysine biosynth 39.9 16 0.00034 21.1 0.9 30 22-59 3-32 (54)
166 smart00154 ZnF_AN1 AN1-like Zi 39.3 16 0.00035 19.4 0.8 15 21-35 12-26 (39)
167 KOG1280|consensus 39.1 30 0.00066 28.1 2.6 26 21-46 79-104 (381)
168 COG1571 Predicted DNA-binding 38.8 16 0.00035 30.6 1.1 14 49-62 367-380 (421)
169 COG5216 Uncharacterized conser 38.5 20 0.00042 21.0 1.1 11 79-89 41-51 (67)
170 KOG1280|consensus 38.3 53 0.0011 26.8 3.8 66 79-160 76-141 (381)
171 PRK12380 hydrogenase nickel in 38.3 15 0.00033 24.7 0.8 12 22-33 71-82 (113)
172 PF05290 Baculo_IE-1: Baculovi 38.2 12 0.00027 25.9 0.3 56 18-96 77-135 (140)
173 PF08271 TF_Zn_Ribbon: TFIIB z 38.1 13 0.00027 20.1 0.3 11 49-59 19-29 (43)
174 PF04780 DUF629: Protein of un 38.1 26 0.00057 29.8 2.3 29 80-108 55-83 (466)
175 PF01155 HypA: Hydrogenase exp 37.8 11 0.00024 25.3 0.1 14 22-35 71-84 (113)
176 COG1675 TFA1 Transcription ini 37.8 34 0.00073 25.1 2.5 13 20-32 112-124 (176)
177 KOG2636|consensus 37.5 13 0.00027 31.3 0.3 23 137-159 400-423 (497)
178 KOG0717|consensus 37.2 21 0.00046 30.2 1.6 22 22-43 293-314 (508)
179 PRK05452 anaerobic nitric oxid 36.8 27 0.00059 29.9 2.2 17 79-95 422-438 (479)
180 PF04780 DUF629: Protein of un 36.7 15 0.00032 31.3 0.6 28 137-164 56-84 (466)
181 COG4888 Uncharacterized Zn rib 36.7 7.3 0.00016 25.5 -0.9 38 48-94 21-58 (104)
182 smart00661 RPOL9 RNA polymeras 35.3 25 0.00054 19.6 1.3 11 82-92 20-30 (52)
183 KOG2636|consensus 35.2 29 0.00063 29.2 2.0 28 76-103 395-423 (497)
184 PF13453 zf-TFIIB: Transcripti 34.5 17 0.00037 19.4 0.5 17 50-66 20-36 (41)
185 KOG2807|consensus 33.9 66 0.0014 26.1 3.7 80 80-162 288-369 (378)
186 COG0068 HypF Hydrogenase matur 33.8 9.9 0.00021 33.9 -0.8 58 23-92 125-183 (750)
187 PF07800 DUF1644: Protein of u 33.2 1.9E+02 0.0041 20.9 5.9 54 49-112 80-138 (162)
188 PF01363 FYVE: FYVE zinc finge 33.2 20 0.00043 21.4 0.7 28 22-61 10-37 (69)
189 PRK00564 hypA hydrogenase nick 32.6 20 0.00043 24.3 0.6 12 22-33 72-83 (117)
190 PF09416 UPF1_Zn_bind: RNA hel 32.0 37 0.00081 24.2 1.9 27 78-104 10-42 (152)
191 PF07282 OrfB_Zn_ribbon: Putat 31.5 27 0.00058 20.9 1.0 12 82-93 46-57 (69)
192 PTZ00448 hypothetical protein; 31.2 31 0.00066 28.4 1.6 24 21-44 314-337 (373)
193 smart00440 ZnF_C2C2 C2C2 Zinc 31.2 8.5 0.00019 20.6 -1.1 10 83-92 29-38 (40)
194 PRK03681 hypA hydrogenase nick 31.2 30 0.00066 23.3 1.4 11 49-59 70-80 (114)
195 KOG4727|consensus 31.1 28 0.00062 25.2 1.2 24 136-159 73-96 (193)
196 TIGR00686 phnA alkylphosphonat 30.9 13 0.00029 24.7 -0.4 15 137-151 18-32 (109)
197 KOG0978|consensus 30.2 20 0.00043 32.1 0.4 19 83-101 679-697 (698)
198 KOG4124|consensus 30.2 31 0.00068 28.1 1.4 54 47-101 176-231 (442)
199 PF10276 zf-CHCC: Zinc-finger 29.7 27 0.00057 18.8 0.7 12 20-31 28-39 (40)
200 PF01428 zf-AN1: AN1-like Zinc 29.7 21 0.00046 19.3 0.3 15 20-34 12-26 (43)
201 TIGR00595 priA primosomal prot 29.2 22 0.00047 30.8 0.4 10 81-90 252-261 (505)
202 PF04810 zf-Sec23_Sec24: Sec23 29.0 24 0.00052 18.8 0.5 15 77-91 19-33 (40)
203 COG5188 PRP9 Splicing factor 3 28.4 44 0.00096 27.3 2.0 25 136-160 236-260 (470)
204 COG3364 Zn-ribbon containing p 28.2 36 0.00079 22.4 1.2 13 21-33 2-14 (112)
205 KOG2907|consensus 28.1 28 0.00061 23.4 0.7 38 50-94 75-114 (116)
206 PRK10220 hypothetical protein; 27.7 16 0.00035 24.4 -0.4 15 137-151 19-33 (111)
207 PF07975 C1_4: TFIIH C1-like d 27.5 16 0.00035 20.8 -0.4 27 136-162 19-45 (51)
208 PF04423 Rad50_zn_hook: Rad50 27.5 25 0.00054 20.0 0.4 12 23-34 22-33 (54)
209 PF10013 DUF2256: Uncharacteri 27.4 49 0.0011 18.0 1.5 19 137-155 7-25 (42)
210 KOG0994|consensus 27.4 69 0.0015 30.8 3.2 77 42-160 1102-1178(1758)
211 KOG4727|consensus 27.1 37 0.0008 24.7 1.2 21 22-42 76-96 (193)
212 KOG0402|consensus 26.9 14 0.0003 23.3 -0.8 13 137-149 53-65 (92)
213 PF11672 DUF3268: Protein of u 26.7 35 0.00076 22.6 1.0 7 83-89 32-38 (102)
214 cd00065 FYVE FYVE domain; Zinc 25.1 33 0.00072 19.4 0.6 11 23-33 4-14 (57)
215 PF05495 zf-CHY: CHY zinc fing 24.8 21 0.00045 21.8 -0.3 59 21-92 10-71 (71)
216 PRK14873 primosome assembly pr 24.7 41 0.00089 30.2 1.3 45 22-91 384-431 (665)
217 PRK00420 hypothetical protein; 24.1 49 0.0011 22.3 1.3 14 81-94 39-52 (112)
218 PF10263 SprT-like: SprT-like 23.8 22 0.00048 25.0 -0.4 31 49-92 123-153 (157)
219 KOG1994|consensus 23.8 39 0.00085 25.8 0.9 21 49-69 239-259 (268)
220 TIGR03830 CxxCG_CxxCG_HTH puta 22.1 40 0.00087 22.7 0.7 21 81-101 30-50 (127)
221 PF08209 Sgf11: Sgf11 (transcr 22.0 1E+02 0.0023 15.7 2.0 21 21-42 4-24 (33)
222 PRK12496 hypothetical protein; 22.0 67 0.0015 23.2 1.8 10 50-59 128-137 (164)
223 CHL00130 rbcS ribulose-1,5-bis 21.7 37 0.00081 23.6 0.4 27 171-197 50-76 (138)
224 PF04641 Rtf2: Rtf2 RING-finge 21.4 62 0.0013 25.3 1.6 52 19-95 111-163 (260)
225 PF11789 zf-Nse: Zinc-finger o 21.4 61 0.0013 18.8 1.2 45 19-87 9-53 (57)
226 KOG1813|consensus 21.3 1.3E+02 0.0028 24.1 3.3 60 19-105 239-302 (313)
227 PF06397 Desulfoferrod_N: Desu 21.1 45 0.00098 17.5 0.6 12 21-32 6-17 (36)
228 cd00924 Cyt_c_Oxidase_Vb Cytoc 20.9 53 0.0012 21.5 1.0 13 20-32 78-90 (97)
229 PLN00104 MYST -like histone ac 20.8 84 0.0018 26.7 2.4 38 49-86 198-235 (450)
230 KOG1994|consensus 20.7 49 0.0011 25.3 0.9 21 81-101 238-258 (268)
231 PF13821 DUF4187: Domain of un 20.2 56 0.0012 18.9 0.9 17 83-99 28-44 (55)
232 KOG0782|consensus 20.1 24 0.00051 30.8 -0.9 51 35-96 239-290 (1004)
233 PLN03239 histone acetyltransfe 20.1 87 0.0019 25.7 2.2 39 48-86 105-146 (351)
No 1
>KOG2462|consensus
Probab=99.93 E-value=4.1e-26 Score=170.95 Aligned_cols=127 Identities=31% Similarity=0.600 Sum_probs=116.7
Q ss_pred CCCCChhHHHHHHHHhCC---CCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCcccc
Q psy2103 1 MLFSQSPHLKNHERIHSG---ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVH 77 (203)
Q Consensus 1 ~~F~~~~~l~~H~~~h~~---~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~ 77 (203)
|.|.+.++|-+|.++|.. .+.+.|.+|++.|.+...|..|+++|.- +++|.+||+.|.+...|..|++ .|
T Consensus 138 k~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l--~c~C~iCGKaFSRPWLLQGHiR-----TH 210 (279)
T KOG2462|consen 138 KSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTL--PCECGICGKAFSRPWLLQGHIR-----TH 210 (279)
T ss_pred cccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCC--CcccccccccccchHHhhcccc-----cc
Confidence 467888999999999963 5679999999999999999999999984 6899999999999999999995 89
Q ss_pred CCCCCcccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHH
Q psy2103 78 TGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKE 157 (203)
Q Consensus 78 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H 157 (203)
+|+|||.|+.|++.|..+++|+.|+++|-+. +.|+|..|++.|...+.|.+|
T Consensus 211 TGEKPF~C~hC~kAFADRSNLRAHmQTHS~~----------------------------K~~qC~~C~KsFsl~SyLnKH 262 (279)
T KOG2462|consen 211 TGEKPFSCPHCGKAFADRSNLRAHMQTHSDV----------------------------KKHQCPRCGKSFALKSYLNKH 262 (279)
T ss_pred cCCCCccCCcccchhcchHHHHHHHHhhcCC----------------------------ccccCcchhhHHHHHHHHHHh
Confidence 9999999999999999999999999999553 679999999999999999999
Q ss_pred Hhhcc
Q psy2103 158 LLSQS 162 (203)
Q Consensus 158 ~~~h~ 162 (203)
...-.
T Consensus 263 ~ES~C 267 (279)
T KOG2462|consen 263 SESAC 267 (279)
T ss_pred hhhcc
Confidence 87654
No 2
>KOG2462|consensus
Probab=99.86 E-value=1.1e-22 Score=152.66 Aligned_cols=98 Identities=38% Similarity=0.726 Sum_probs=93.0
Q ss_pred CCCCChhHHHHHHHHhCCCCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCC
Q psy2103 1 MLFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80 (203)
Q Consensus 1 ~~F~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~ 80 (203)
|+|.+..+|+.|+++|. .+++|.+||+.|....-|+.|+|+|+|||||.|+.|++.|..+++|+.||+ .|.+.
T Consensus 169 K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQ-----THS~~ 241 (279)
T KOG2462|consen 169 KVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQ-----THSDV 241 (279)
T ss_pred ceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHH-----hhcCC
Confidence 57888899999999997 579999999999999999999999999999999999999999999999997 79999
Q ss_pred CCcccCCCCccCCChHHHHHHHHHh
Q psy2103 81 KPHHCDICDVGFSDKFALKRHRLIH 105 (203)
Q Consensus 81 ~~~~C~~C~~~f~~~~~L~~H~~~~ 105 (203)
+.|.|..|++.|..++.|.+|.+.-
T Consensus 242 K~~qC~~C~KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 242 KKHQCPRCGKSFALKSYLNKHSESA 266 (279)
T ss_pred ccccCcchhhHHHHHHHHHHhhhhc
Confidence 9999999999999999999998764
No 3
>KOG1074|consensus
Probab=99.73 E-value=2.7e-19 Score=151.03 Aligned_cols=88 Identities=26% Similarity=0.478 Sum_probs=77.0
Q ss_pred eeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCCCCCCCC
Q psy2103 50 YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTTPPQSTP 129 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (203)
-.|.+|.++....++|+.|.+ .|+|+++|+|.+|++.|+++.+|+.|+-.|.....-
T Consensus 606 NqCiiC~rVlSC~saLqmHyr-----tHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~------------------ 662 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYR-----THTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA------------------ 662 (958)
T ss_pred cceeeeeecccchhhhhhhhh-----cccCcCccccccccchhccccchhhcccccccCccc------------------
Confidence 689999999999999999995 899999999999999999999999999998543210
Q ss_pred CCCCCCCcccccc---hhhHhHHHHHHHHHHHhhccCCCc
Q psy2103 130 THSSSQLEEWKCE---SSRLIFEAWAKLQKELLSQSGYPY 166 (203)
Q Consensus 130 ~~~~~~~~~~~C~---~C~~~f~~~~~l~~H~~~h~~~~~ 166 (203)
...|.|+ +|-+.|...-.|.+|++.|.+...
T Consensus 663 ------R~q~ScP~~~ic~~kftn~V~lpQhIriH~~~~~ 696 (958)
T KOG1074|consen 663 ------RVQFSCPSTFICQKKFTNAVTLPQHIRIHLGGQI 696 (958)
T ss_pred ------cccccCCchhhhcccccccccccceEEeecCCCC
Confidence 1347799 999999999999999999986543
No 4
>KOG3576|consensus
Probab=99.72 E-value=5e-19 Score=127.15 Aligned_cols=126 Identities=24% Similarity=0.489 Sum_probs=112.0
Q ss_pred CCCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHH
Q psy2103 18 GERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFA 97 (203)
Q Consensus 18 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~ 97 (203)
+...|.|.+|++.|....-|.+||+-|...+.+-|..||++|...-+|.+|++ .|+|.++|+|..|++.|+.+-.
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~r-----thtgvrpykc~~c~kaftqrcs 188 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTR-----THTGVRPYKCSLCEKAFTQRCS 188 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhc-----cccCccccchhhhhHHHHhhcc
Confidence 34559999999999999999999999999999999999999999999999995 8999999999999999999999
Q ss_pred HHHHHHHhhhhhcCccccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhhccCCC
Q psy2103 98 LKRHRLIHEKYARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLSQSGYP 165 (203)
Q Consensus 98 L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 165 (203)
|..|++.-|+.+......... ...|.|+.||.+-.....+..|+..|+...
T Consensus 189 leshl~kvhgv~~~yaykerr-----------------~kl~vcedcg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 189 LESHLKKVHGVQHQYAYKERR-----------------AKLYVCEDCGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred HHHHHHHHcCchHHHHHHHhh-----------------hheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence 999999988876544433322 278999999999999999999999987653
No 5
>KOG3608|consensus
Probab=99.70 E-value=2.5e-17 Score=127.44 Aligned_cols=131 Identities=24% Similarity=0.502 Sum_probs=102.0
Q ss_pred CCCCChhHHHHHHHHhCCCCceecccccccccChhhHHHHHHH-hcCCCCeeCcchhhhccChhHHHhhhhcCCccccCC
Q psy2103 1 MLFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRI-HTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79 (203)
Q Consensus 1 ~~F~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~ 79 (203)
|.|.+...|+.|++.|-. -|+|++|+.+....++|..||+. |...+||+|+.|++.|.+.++|..|.. .|.
T Consensus 245 KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~-----~HS- 316 (467)
T KOG3608|consen 245 KRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQ-----VHS- 316 (467)
T ss_pred HHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHH-----hcc-
Confidence 467777888888887753 47888888888888888888764 556788888888888888888888885 455
Q ss_pred CCCcccCC--CCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHH
Q psy2103 80 EKPHHCDI--CDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKE 157 (203)
Q Consensus 80 ~~~~~C~~--C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H 157 (203)
+..|.|.. |.++|++..+|++|++.++.. .....|.|-.|++.|.+..+|.+|
T Consensus 317 ~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg-------------------------~np~~Y~CH~Cdr~ft~G~~L~~H 371 (467)
T KOG3608|consen 317 KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEG-------------------------NNPILYACHCCDRFFTSGKSLSAH 371 (467)
T ss_pred ccceecCCCCCcHHHHHHHHHHHHHHHhccC-------------------------CCCCceeeecchhhhccchhHHHH
Confidence 66788877 888888888888887766531 123679999999999999999999
Q ss_pred HhhccCC
Q psy2103 158 LLSQSGY 164 (203)
Q Consensus 158 ~~~h~~~ 164 (203)
+...++.
T Consensus 372 L~kkH~f 378 (467)
T KOG3608|consen 372 LMKKHGF 378 (467)
T ss_pred HHHhhcc
Confidence 8776554
No 6
>KOG3608|consensus
Probab=99.69 E-value=1.1e-16 Score=123.92 Aligned_cols=152 Identities=20% Similarity=0.415 Sum_probs=102.3
Q ss_pred CCCCChhHHHHHHHHhCCCCceecccccccccChhhHHHHHHHhc--CCCCeeCcchhhhccChhHHHhhhhcCCccccC
Q psy2103 1 MLFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHT--GEKPYRCSICGSAFNQATHLKNHAKVGKCKVHT 78 (203)
Q Consensus 1 ~~F~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~--~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~ 78 (203)
++|.+++.|++|++.|.+++...|+.||.-|.++..|-.|.+..+ ..++|.|..|.+.|.++..|..|+. .|.
T Consensus 187 ~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~-----rHv 261 (467)
T KOG3608|consen 187 KHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVV-----RHV 261 (467)
T ss_pred hhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHH-----Hhh
Confidence 368899999999999999999999999999999999999987554 3457888888888888888888874 332
Q ss_pred CCCCcccCCCCccCCChHHHHHHHHHhhhhhcCcccc---CCCCCCCCCCCCCCCCCCCCCcccccch--hhHhHHHHHH
Q psy2103 79 GEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTVN---QSHDSQTTPPQSTPTHSSSQLEEWKCES--SRLIFEAWAK 153 (203)
Q Consensus 79 ~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~ 153 (203)
.-|+|+.|......++.|..|++..|...++..+. ...........+...++ ...|.|+. |.+.|+....
T Consensus 262 --n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS---~~~y~C~h~~C~~s~r~~~q 336 (467)
T KOG3608|consen 262 --NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS---KTVYQCEHPDCHYSVRTYTQ 336 (467)
T ss_pred --hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc---ccceecCCCCCcHHHHHHHH
Confidence 23777777777777777777777665443222221 11111111111111111 25677755 7777777777
Q ss_pred HHHHHhhcc
Q psy2103 154 LQKELLSQS 162 (203)
Q Consensus 154 l~~H~~~h~ 162 (203)
|.+|++.++
T Consensus 337 ~~~H~~evh 345 (467)
T KOG3608|consen 337 MRRHFLEVH 345 (467)
T ss_pred HHHHHHHhc
Confidence 777776654
No 7
>KOG1074|consensus
Probab=99.67 E-value=3.3e-17 Score=138.57 Aligned_cols=104 Identities=28% Similarity=0.634 Sum_probs=75.2
Q ss_pred CCCChhHHHHHHHHhCCCCceecccccccccChhhHHHHHHHhcCC----CCeeCc---chhhhccChhHHHhhhhcCCc
Q psy2103 2 LFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGE----KPYRCS---ICGSAFNQATHLKNHAKVGKC 74 (203)
Q Consensus 2 ~F~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~----~~~~C~---~C~~~f~~~~~l~~H~~~~~~ 74 (203)
+....++|+.|.++|.||+||+|.+||+.|.++.+|+.||..|-.. -.+.|+ +|-+.|.+.-.|.+|++.|-+
T Consensus 614 VlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lpQhIriH~~ 693 (958)
T KOG1074|consen 614 VLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLPQHIRIHLG 693 (958)
T ss_pred cccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccccceEEeecC
Confidence 4567899999999999999999999999999999999999988653 347788 888999999999999875331
Q ss_pred c-ccCC----C---CCcccCCCCccCCChHHHHHHHHHh
Q psy2103 75 K-VHTG----E---KPHHCDICDVGFSDKFALKRHRLIH 105 (203)
Q Consensus 75 ~-~~~~----~---~~~~C~~C~~~f~~~~~L~~H~~~~ 105 (203)
- ...+ + ..-.|..|.+.|.....+..++-.+
T Consensus 694 ~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~ 732 (958)
T KOG1074|consen 694 GQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQ 732 (958)
T ss_pred CCCCCCcccccccchhcccchhhhcccccccchhhhhcc
Confidence 0 0001 0 1135555555555555555554333
No 8
>KOG3576|consensus
Probab=99.56 E-value=9.2e-16 Score=110.46 Aligned_cols=108 Identities=30% Similarity=0.480 Sum_probs=94.6
Q ss_pred CCCCChhHHHHHHHHhCCCCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCcccc---
Q psy2103 1 MLFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVH--- 77 (203)
Q Consensus 1 ~~F~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~--- 77 (203)
|.|...-.|.+|++.|...+.|-|..||+.|.+...|.+|+++|+|.+||+|..|++.|..+..|..|++..|...+
T Consensus 125 K~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~ya 204 (267)
T KOG3576|consen 125 KKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYA 204 (267)
T ss_pred hhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHH
Confidence 45666677999999999999999999999999999999999999999999999999999999999999984333211
Q ss_pred ---CCCCCcccCCCCccCCChHHHHHHHHHhhhh
Q psy2103 78 ---TGEKPHHCDICDVGFSDKFALKRHRLIHEKY 108 (203)
Q Consensus 78 ---~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~ 108 (203)
...+.|.|..||+.-.....+..|++.+|..
T Consensus 205 ykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~ 238 (267)
T KOG3576|consen 205 YKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF 238 (267)
T ss_pred HHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence 2347799999999999999999999998754
No 9
>KOG3623|consensus
Probab=99.45 E-value=2.9e-14 Score=119.47 Aligned_cols=80 Identities=39% Similarity=0.855 Sum_probs=76.2
Q ss_pred CCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHH
Q psy2103 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFAL 98 (203)
Q Consensus 19 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L 98 (203)
+.+|.|++|++.|.-.+.|.+|.-.|+|.+||.|.+|.+.|+.+-.|..|++ .|.|+++|.|+.|++.|+....+
T Consensus 892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkR-----LHSGEKPfQCdKClKRFSHSGSY 966 (1007)
T KOG3623|consen 892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKR-----LHSGEKPFQCDKCLKRFSHSGSY 966 (1007)
T ss_pred cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhh-----hccCCCcchhhhhhhhcccccch
Confidence 4579999999999999999999999999999999999999999999999995 99999999999999999999999
Q ss_pred HHHHH
Q psy2103 99 KRHRL 103 (203)
Q Consensus 99 ~~H~~ 103 (203)
..||.
T Consensus 967 SQHMN 971 (1007)
T KOG3623|consen 967 SQHMN 971 (1007)
T ss_pred Hhhhc
Confidence 99974
No 10
>KOG3623|consensus
Probab=99.43 E-value=1.6e-13 Score=115.15 Aligned_cols=96 Identities=32% Similarity=0.652 Sum_probs=84.5
Q ss_pred hHHHHHHHHhC--CCCceecccccccccChhhHHHHHHHhcCC-------------CCeeCcchhhhccChhHHHhhhhc
Q psy2103 7 PHLKNHERIHS--GERPYQCEVCEKTFARHSTLWNHRRIHTGE-------------KPYRCSICGSAFNQATHLKNHAKV 71 (203)
Q Consensus 7 ~~l~~H~~~h~--~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~-------------~~~~C~~C~~~f~~~~~l~~H~~~ 71 (203)
..|+.|++..+ .+..|.|.+|.++|.+...|.+||.+|... +.|+|..|++.|+.+-.|..|++
T Consensus 224 tslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlR- 302 (1007)
T KOG3623|consen 224 TSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLR- 302 (1007)
T ss_pred HHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhhhe-
Confidence 56889977644 345699999999999999999999999542 45999999999999999999995
Q ss_pred CCccccCCCCCcccCCCCccCCChHHHHHHHHHhhh
Q psy2103 72 GKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEK 107 (203)
Q Consensus 72 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~ 107 (203)
.|.|+++|.|+.|++.|+....+..|+-....
T Consensus 303 ----IHSGEKPfeCpnCkKRFSHSGSySSHmSSKKC 334 (1007)
T KOG3623|consen 303 ----IHSGEKPFECPNCKKRFSHSGSYSSHMSSKKC 334 (1007)
T ss_pred ----eecCCCCcCCcccccccccCCcccccccccch
Confidence 99999999999999999999999999876653
No 11
>KOG3993|consensus
Probab=99.24 E-value=3.1e-12 Score=101.49 Aligned_cols=86 Identities=24% Similarity=0.551 Sum_probs=71.8
Q ss_pred eecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCcccc------------------------
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVH------------------------ 77 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~------------------------ 77 (203)
|.|.+|...|.+...|.+|.-..-..-.|+|+.|+++|...++|..|.++|+-|..
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~r 347 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAER 347 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccc
Confidence 99999999999999999997433333359999999999999999999998873211
Q ss_pred ----CCCCCcccCCCCccCCChHHHHHHHHHhhh
Q psy2103 78 ----TGEKPHHCDICDVGFSDKFALKRHRLIHEK 107 (203)
Q Consensus 78 ----~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~ 107 (203)
..+..|.|..|++.|+++..|+.|+.+|+.
T Consensus 348 sg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~ 381 (500)
T KOG3993|consen 348 SGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR 381 (500)
T ss_pred cCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence 112369999999999999999999988873
No 12
>PHA00733 hypothetical protein
Probab=99.19 E-value=1.8e-11 Score=84.53 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=74.5
Q ss_pred HHHHHHHHhCCCCceecccccccccChhhHHHH--HH---HhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCC
Q psy2103 8 HLKNHERIHSGERPYQCEVCEKTFARHSTLWNH--RR---IHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82 (203)
Q Consensus 8 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H--~~---~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~ 82 (203)
.|.++-..-..++++.|.+|...|.....|..+ ++ .+++.++|.|..|++.|.+...|..|+. .+ ..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r-----~h--~~~ 99 (128)
T PHA00733 27 ELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIR-----YT--EHS 99 (128)
T ss_pred HhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHh-----cC--CcC
Confidence 344443333346789999999999988777776 22 2345779999999999999999999996 34 346
Q ss_pred cccCCCCccCCChHHHHHHHHHhhhh
Q psy2103 83 HHCDICDVGFSDKFALKRHRLIHEKY 108 (203)
Q Consensus 83 ~~C~~C~~~f~~~~~L~~H~~~~~~~ 108 (203)
|.|+.|++.|.....|..|+...|+.
T Consensus 100 ~~C~~CgK~F~~~~sL~~H~~~~h~~ 125 (128)
T PHA00733 100 KVCPVCGKEFRNTDSTLDHVCKKHNI 125 (128)
T ss_pred ccCCCCCCccCCHHHHHHHHHHhcCc
Confidence 99999999999999999999888763
No 13
>PHA00733 hypothetical protein
Probab=99.09 E-value=5.9e-11 Score=82.02 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=70.5
Q ss_pred CCCCeeCcchhhhccChhHHHhh--hhcCCccccCCCCCcccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCC
Q psy2103 46 GEKPYRCSICGSAFNQATHLKNH--AKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTT 123 (203)
Q Consensus 46 ~~~~~~C~~C~~~f~~~~~l~~H--~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~ 123 (203)
..+.+.|.+|...|.....|..+ +..+ ..+.+.++|.|+.|++.|.+...|..|++.+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~----------------- 97 (128)
T PHA00733 37 EQKRLIRAVVKTLIYNPQLLDESSYLYKL--LTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTE----------------- 97 (128)
T ss_pred hhhhHHHHHHhhhccChhhhcchHHHHhh--cccCCCCCccCCCCCCcCCCHHHHHHHHhcCC-----------------
Confidence 35679999999999998888877 2211 13445789999999999999999999987640
Q ss_pred CCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhhccCC
Q psy2103 124 PPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLSQSGY 164 (203)
Q Consensus 124 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 164 (203)
.+|.|..|++.|.....|..|++..++.
T Consensus 98 -------------~~~~C~~CgK~F~~~~sL~~H~~~~h~~ 125 (128)
T PHA00733 98 -------------HSKVCPVCGKEFRNTDSTLDHVCKKHNI 125 (128)
T ss_pred -------------cCccCCCCCCccCCHHHHHHHHHHhcCc
Confidence 2378999999999999999999887653
No 14
>PHA02768 hypothetical protein; Provisional
Probab=98.97 E-value=2.3e-10 Score=65.90 Aligned_cols=43 Identities=19% Similarity=0.475 Sum_probs=33.1
Q ss_pred eecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHH
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLK 66 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~ 66 (203)
|.|+.||+.|....+|..||++|+ ++++|..|++.|...+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 778888888888888888888877 4677888888777666554
No 15
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.92 E-value=1.8e-09 Score=90.76 Aligned_cols=101 Identities=16% Similarity=0.380 Sum_probs=77.2
Q ss_pred CceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCC-----
Q psy2103 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSD----- 94 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~----- 94 (203)
+.+.|+.|++.|. ...|..|+..++ +++.|+ |+..+ .+..|..|+. .|...+++.|..|++.|..
T Consensus 452 ~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~-----thCp~Kpi~C~fC~~~v~~g~~~~ 521 (567)
T PLN03086 452 NHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQA-----STCPLRLITCRFCGDMVQAGGSAM 521 (567)
T ss_pred cCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhh-----ccCCCCceeCCCCCCccccCcccc
Confidence 3467899999985 678999999886 579999 99755 6688999985 7888899999999998852
Q ss_pred -----hHHHHHHHHHhhhhhcCccccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhh
Q psy2103 95 -----KFALKRHRLIHEKYARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLS 160 (203)
Q Consensus 95 -----~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 160 (203)
...|..|.... + ...+.|..||+.|.. ..|..|+..
T Consensus 522 d~~d~~s~Lt~HE~~C-G----------------------------~rt~~C~~Cgk~Vrl-rdm~~H~~~ 562 (567)
T PLN03086 522 DVRDRLRGMSEHESIC-G----------------------------SRTAPCDSCGRSVML-KEMDIHQIA 562 (567)
T ss_pred chhhhhhhHHHHHHhc-C----------------------------CcceEccccCCeeee-hhHHHHHHH
Confidence 34666776553 1 256889999988865 466677755
No 16
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.89 E-value=3.6e-09 Score=89.03 Aligned_cols=93 Identities=18% Similarity=0.464 Sum_probs=76.5
Q ss_pred CCCChhHHHHHHHHhCCCCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhcc----------ChhHHHhhhhc
Q psy2103 2 LFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFN----------QATHLKNHAKV 71 (203)
Q Consensus 2 ~F~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~----------~~~~l~~H~~~ 71 (203)
.|. ..+|..|+..++ .++.|+ |+..+ ....|..|+.+|.+.+++.|..|+..|. ....|..|..
T Consensus 462 ~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~- 535 (567)
T PLN03086 462 AFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHES- 535 (567)
T ss_pred ccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHH-
Confidence 454 578999999986 789999 99765 6689999999999999999999999984 2357999985
Q ss_pred CCccccCCCCCcccCCCCccCCChHHHHHHHHHhh
Q psy2103 72 GKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHE 106 (203)
Q Consensus 72 ~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~ 106 (203)
..+.+++.|..|++.+..+ .|..|+...|
T Consensus 536 -----~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h 564 (567)
T PLN03086 536 -----ICGSRTAPCDSCGRSVMLK-EMDIHQIAVH 564 (567)
T ss_pred -----hcCCcceEccccCCeeeeh-hHHHHHHHhh
Confidence 4699999999999999877 4567765544
No 17
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.87 E-value=1.9e-09 Score=53.23 Aligned_cols=25 Identities=48% Similarity=1.159 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCCceeccccccccc
Q psy2103 8 HLKNHERIHSGERPYQCEVCEKTFA 32 (203)
Q Consensus 8 ~l~~H~~~h~~~~~~~C~~C~~~f~ 32 (203)
+|++||++|.+++||.|++|++.|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence 4677777777777788887777775
No 18
>KOG3993|consensus
Probab=98.82 E-value=2.1e-09 Score=85.66 Aligned_cols=114 Identities=21% Similarity=0.331 Sum_probs=78.4
Q ss_pred eeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHHHHhhhhhcCc--cccCCC---CCCCCC
Q psy2103 50 YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNS--TVNQSH---DSQTTP 124 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~--~~~~~~---~~~~~~ 124 (203)
|+|..|...|...=.|.+|.= .-.--.-|+|+.|+|.|.-..+|..|++=|..-.... ...... ......
T Consensus 268 yiCqLCK~kYeD~F~LAQHrC-----~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~ 342 (500)
T KOG3993|consen 268 YICQLCKEKYEDAFALAQHRC-----PRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV 342 (500)
T ss_pred HHHHHHHHhhhhHHHHhhccC-----CeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence 899999999999999999962 1112234999999999999999999999986322111 111100 000000
Q ss_pred CCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhhccCCCccc
Q psy2103 125 PQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLSQSGYPYHK 168 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~ 168 (203)
......-.+...+.|.|..|++.|+....|+.|+.+|+..+..+
T Consensus 343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k 386 (500)
T KOG3993|consen 343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK 386 (500)
T ss_pred hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence 11111222234468999999999999999999999998766555
No 19
>PHA02768 hypothetical protein; Provisional
Probab=98.68 E-value=6.9e-09 Score=59.81 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=39.0
Q ss_pred CeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHH
Q psy2103 49 PYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALK 99 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~ 99 (203)
.|.|+.||+.|...+.|..|++ .|. ++|+|..|++.|...+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r-----~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLR-----KHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHH-----hcC--CcccCCcccceecccceeE
Confidence 5899999999999999999997 666 6899999999999877664
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.68 E-value=1.3e-08 Score=50.19 Aligned_cols=26 Identities=54% Similarity=1.161 Sum_probs=21.1
Q ss_pred hHHHHHHHhcCCCCeeCcchhhhccC
Q psy2103 36 TLWNHRRIHTGEKPYRCSICGSAFNQ 61 (203)
Q Consensus 36 ~L~~H~~~h~~~~~~~C~~C~~~f~~ 61 (203)
+|..||++|+++++|.|+.|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 47888888888888888888888753
No 21
>PHA00616 hypothetical protein
Probab=98.54 E-value=3.8e-08 Score=54.02 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=29.5
Q ss_pred ceecccccccccChhhHHHHHHHhcCCCCeeCcc
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSI 54 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~ 54 (203)
||+|..||+.|..++.|..|++.|++++++.|..
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence 5889999999999999999999999988887764
No 22
>PHA00732 hypothetical protein
Probab=98.31 E-value=3.2e-07 Score=57.76 Aligned_cols=45 Identities=22% Similarity=0.521 Sum_probs=36.4
Q ss_pred ceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhh
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAK 70 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 70 (203)
||.|..|++.|.+...|..|++.++. ++.|..|++.|. .|..|+.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~ 45 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFY 45 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhc
Confidence 58899999999999999999985332 357999999997 4778875
No 23
>PHA00616 hypothetical protein
Probab=98.24 E-value=9.8e-07 Score=48.46 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=27.3
Q ss_pred ccccchhhHhHHHHHHHHHHHhhccCCCcc
Q psy2103 138 EWKCESSRLIFEAWAKLQKELLSQSGYPYH 167 (203)
Q Consensus 138 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~ 167 (203)
+|+|..||+.|...+.|.+|++.|+|++.-
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~ 30 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKL 30 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcc
Confidence 589999999999999999999999998543
No 24
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.19 E-value=1.9e-06 Score=50.41 Aligned_cols=50 Identities=26% Similarity=0.448 Sum_probs=25.5
Q ss_pred eeCcchhhhccChhHHHhhhhcCCccccCC-CCCcccCCCCccCCChHHHHHHHHHhh
Q psy2103 50 YRCSICGSAFNQATHLKNHAKVGKCKVHTG-EKPHHCDICDVGFSDKFALKRHRLIHE 106 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~-~~~~~C~~C~~~f~~~~~L~~H~~~~~ 106 (203)
|.|+.|++ ..+...|..|... .|.. .+.+.||+|...++ .+|..|+...|
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~----~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCED----EHRSESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHh----HCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 55666666 3334556666552 3332 23466666665433 25666665544
No 25
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=98.12 E-value=2.2e-06 Score=40.79 Aligned_cols=23 Identities=43% Similarity=0.918 Sum_probs=17.7
Q ss_pred eecccccccccChhhHHHHHHHh
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIH 44 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h 44 (203)
|.|++|++.|.+...|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 67788888888888888887764
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.08 E-value=7.4e-06 Score=47.84 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=41.4
Q ss_pred CcccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhhc
Q psy2103 82 PHHCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 82 ~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
.|.||.|++ ..+...|..|....|... ...+.|++|...+. .+|.+|+..+
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~--------------------------~~~v~CPiC~~~~~--~~l~~Hl~~~ 52 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSE--------------------------SKNVVCPICSSRVT--DNLIRHLNSQ 52 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCC--------------------------CCCccCCCchhhhh--hHHHHHHHHh
Confidence 489999999 566789999988776532 14578999999765 4999999886
Q ss_pred cC
Q psy2103 162 SG 163 (203)
Q Consensus 162 ~~ 163 (203)
++
T Consensus 53 H~ 54 (54)
T PF05605_consen 53 HR 54 (54)
T ss_pred cC
Confidence 53
No 27
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=98.04 E-value=1e-06 Score=42.01 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=21.5
Q ss_pred cccchhhHhHHHHHHHHHHHhhc
Q psy2103 139 WKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 139 ~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
|+|+.|++.|.++..|.+|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 68999999999999999999874
No 28
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=98.01 E-value=1.7e-06 Score=57.06 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=22.0
Q ss_pred ccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhhc
Q psy2103 84 HCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 84 ~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
.|..|+..|.+...|..|+...|+.......... . ...............+.|..|++.|.+...|..||+.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~-~----~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLV-D----PNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred Cccccccccccccccccccccccccccccccccc-c----ccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 3777777777777788887766665432110000 0 00000011111123699999999999999999999975
No 29
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.98 E-value=4.3e-06 Score=55.15 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=22.4
Q ss_pred ecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHH
Q psy2103 23 QCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHR 102 (203)
Q Consensus 23 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~ 102 (203)
+|..|+..|.+...|..||...++-. -. ....+.....+..++. ......+.|..|++.|.+...|..|+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~---~~-~~~~l~~~~~~~~~~~------~~~~~~~~C~~C~~~f~s~~~l~~Hm 70 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFD---IP-DQKYLVDPNRLLNYLR------KKVKESFRCPYCNKTFRSREALQEHM 70 (100)
T ss_dssp ----------------------------------------------------------SSEEBSSSS-EESSHHHHHHHH
T ss_pred Cccccccccccccccccccccccccc---cc-cccccccccccccccc------cccCCCCCCCccCCCCcCHHHHHHHH
Confidence 58999999999999999998776542 11 1122224444444442 12223699999999999999999999
Q ss_pred HHhh
Q psy2103 103 LIHE 106 (203)
Q Consensus 103 ~~~~ 106 (203)
+.++
T Consensus 71 ~~~~ 74 (100)
T PF12756_consen 71 RSKH 74 (100)
T ss_dssp HHTT
T ss_pred cCcc
Confidence 9864
No 30
>PHA00732 hypothetical protein
Probab=97.93 E-value=5.9e-06 Score=52.05 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=38.0
Q ss_pred CeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHHHHh
Q psy2103 49 PYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~ 105 (203)
||.|..|++.|.+...|..|++. .|. ++.|+.|++.|. .|..|...+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~----~H~---~~~C~~CgKsF~---~l~~H~~~~ 47 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARR----NHT---LTKCPVCNKSYR---RLNQHFYSQ 47 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhc----ccC---CCccCCCCCEeC---Chhhhhccc
Confidence 58899999999999999999962 233 358999999998 477787544
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.93 E-value=9e-06 Score=38.83 Aligned_cols=24 Identities=42% Similarity=0.880 Sum_probs=16.6
Q ss_pred eecccccccccChhhHHHHHHHhc
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHT 45 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~ 45 (203)
|.|++|+..|.+...|..|++.++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 577888888888888888877654
No 32
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.93 E-value=3.2e-06 Score=65.61 Aligned_cols=57 Identities=32% Similarity=0.716 Sum_probs=45.8
Q ss_pred CCCeeCcc--hhhhccChhHHHhhhhcCCccc--------------cCCCCCcccCCCCccCCChHHHHHHHH
Q psy2103 47 EKPYRCSI--CGSAFNQATHLKNHAKVGKCKV--------------HTGEKPHHCDICDVGFSDKFALKRHRL 103 (203)
Q Consensus 47 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~--------------~~~~~~~~C~~C~~~f~~~~~L~~H~~ 103 (203)
++||+|++ |++.|++...|..|+..+|+.. -..++||+|+.|++.|+....|+-|+.
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 47899988 9999999999999988777421 223488999999999999999888864
No 33
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.80 E-value=1e-05 Score=40.01 Aligned_cols=25 Identities=44% Similarity=0.963 Sum_probs=16.0
Q ss_pred ceecccccccccChhhHHHHHHHhc
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIHT 45 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h~ 45 (203)
||.|..|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 4666666666666666666665553
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.72 E-value=2.7e-05 Score=37.12 Aligned_cols=24 Identities=33% Similarity=0.695 Sum_probs=13.8
Q ss_pred cccCCCCccCCChHHHHHHHHHhh
Q psy2103 83 HHCDICDVGFSDKFALKRHRLIHE 106 (203)
Q Consensus 83 ~~C~~C~~~f~~~~~L~~H~~~~~ 106 (203)
|.|+.|++.|.+...|..|+..+|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 456666666666666666666553
No 35
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.69 E-value=1.7e-05 Score=61.69 Aligned_cols=53 Identities=34% Similarity=0.767 Sum_probs=46.0
Q ss_pred CCCceeccc--ccccccChhhHHHHHHHhc-------------------CCCCeeCcchhhhccChhHHHhhhh
Q psy2103 18 GERPYQCEV--CEKTFARHSTLWNHRRIHT-------------------GEKPYRCSICGSAFNQATHLKNHAK 70 (203)
Q Consensus 18 ~~~~~~C~~--C~~~f~~~~~L~~H~~~h~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~ 70 (203)
+++||+|++ |++.+++...|.-||.-=| ..|||+|.+|++.|++...|..|+.
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 358999998 9999999999999986322 1378999999999999999999984
No 36
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.68 E-value=1e-05 Score=40.04 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=23.8
Q ss_pred ccccchhhHhHHHHHHHHHHHhhccC
Q psy2103 138 EWKCESSRLIFEAWAKLQKELLSQSG 163 (203)
Q Consensus 138 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 163 (203)
+|+|..|++.|.+...|.+|++.|.+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 47899999999999999999998864
No 37
>KOG1146|consensus
Probab=97.57 E-value=5.2e-05 Score=68.94 Aligned_cols=135 Identities=17% Similarity=0.262 Sum_probs=74.4
Q ss_pred CCCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCc-cccCCCCCcccCCCCccCCChH
Q psy2103 18 GERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKC-KVHTGEKPHHCDICDVGFSDKF 96 (203)
Q Consensus 18 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-~~~~~~~~~~C~~C~~~f~~~~ 96 (203)
..+.|.|+.|+..|+....|..|||..+.+-.- .+|-.+ ..|.....+ ..-.+.++|.|..|...++...
T Consensus 462 ~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c~~g-------q~~~~~arg~~~~~~~~p~~C~~C~~stttng 532 (1406)
T KOG1146|consen 462 FFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYCKAG-------QNHPRLARGEVYRCPGKPYPCRACNYSTTTNG 532 (1406)
T ss_pred ccccccCCccchhhhhHHHhhhcccccccccch--hHhHhc-------cccccccccccccCCCCcccceeeeeeeecch
Confidence 345677777777777777777777764433111 333211 111110000 1223456799999999999999
Q ss_pred HHHHHHHHhhhhh------cCcc---------ccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhhc
Q psy2103 97 ALKRHRLIHEKYA------RNST---------VNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 97 ~L~~H~~~~~~~~------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
+|..|+...-... .... .........................|.|.+|++.-.-..+|+.||..-
T Consensus 533 ~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss 612 (1406)
T KOG1146|consen 533 NLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTAS 612 (1406)
T ss_pred HHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccC
Confidence 9999976532110 0000 000111111111111111122346799999999999999999999763
No 38
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=97.36 E-value=0.0001 Score=41.44 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=19.3
Q ss_pred CCCceecccccccccChhhHHHHHHHhcCCCC
Q psy2103 18 GERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49 (203)
Q Consensus 18 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~ 49 (203)
.+.|..|++|+..+....+|++|+...|+.++
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 45567788888888888888888777776554
No 39
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.11 E-value=0.00026 Score=34.07 Aligned_cols=24 Identities=13% Similarity=0.495 Sum_probs=21.8
Q ss_pred cccchhhHhHHHHHHHHHHHhhcc
Q psy2103 139 WKCESSRLIFEAWAKLQKELLSQS 162 (203)
Q Consensus 139 ~~C~~C~~~f~~~~~l~~H~~~h~ 162 (203)
|.|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 579999999999999999999764
No 40
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.10 E-value=0.00035 Score=33.62 Aligned_cols=24 Identities=42% Similarity=0.754 Sum_probs=17.0
Q ss_pred eecccccccccChhhHHHHHHHhc
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHT 45 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~ 45 (203)
|.|..|++.|.+...|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 467777777777777777776553
No 41
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=97.07 E-value=0.00031 Score=33.88 Aligned_cols=22 Identities=32% Similarity=0.883 Sum_probs=14.7
Q ss_pred eecccccccccChhhHHHHHHH
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRI 43 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~ 43 (203)
|.|.+|+..|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4567777777777777777653
No 42
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=97.00 E-value=0.0006 Score=32.54 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=15.4
Q ss_pred eecccccccccChhhHHHHHHHhc
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHT 45 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~ 45 (203)
|.|+.|+.... ...|..|++.++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 57777777776 777777777665
No 43
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=97.00 E-value=0.00016 Score=34.89 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.3
Q ss_pred cccchhhHhHHHHHHHHHHHhhc
Q psy2103 139 WKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 139 ~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
|.|.+|++.|.+...|..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 68999999999999999999864
No 44
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.89 E-value=0.00097 Score=31.78 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=15.1
Q ss_pred cccCCCCccCCChHHHHHHHHHhh
Q psy2103 83 HHCDICDVGFSDKFALKRHRLIHE 106 (203)
Q Consensus 83 ~~C~~C~~~f~~~~~L~~H~~~~~ 106 (203)
|+|+.|++... ...|..|++.+|
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 56777777776 777777777765
No 45
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.72 E-value=0.0016 Score=36.68 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=20.7
Q ss_pred CCCCCcccCCCCccCCChHHHHHHHHHhhhhh
Q psy2103 78 TGEKPHHCDICDVGFSDKFALKRHRLIHEKYA 109 (203)
Q Consensus 78 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~ 109 (203)
..+.+-.|++|+..+++..+|++|++..|+..
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence 34567788888888888888888888877653
No 46
>PRK04860 hypothetical protein; Provisional
Probab=96.65 E-value=0.0012 Score=47.46 Aligned_cols=36 Identities=31% Similarity=0.750 Sum_probs=18.7
Q ss_pred CeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCC
Q psy2103 49 PYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFS 93 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~ 93 (203)
+|.|. |+. ....++.|.+ .+.+.++|.|..|+..|.
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~r-----i~~g~~~YrC~~C~~~l~ 154 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNR-----VVRGEAVYRCRRCGETLV 154 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHH-----HhcCCccEECCCCCceeE
Confidence 35554 554 4444555553 455555555555555544
No 47
>KOG4173|consensus
Probab=96.63 E-value=0.00057 Score=50.07 Aligned_cols=90 Identities=24% Similarity=0.433 Sum_probs=71.1
Q ss_pred Cceeccc--ccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCc-----cccCCCCCcccCC--CCc
Q psy2103 20 RPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKC-----KVHTGEKPHHCDI--CDV 90 (203)
Q Consensus 20 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~-----~~~~~~~~~~C~~--C~~ 90 (203)
+.|.|++ |...|.+......|..+-++. .|..|.+.|.+...|..|+..-|- ...-|.-+|.|-. |+.
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~ 154 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE 154 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence 4488998 889999999899887665654 699999999999999999974331 2234566799955 999
Q ss_pred cCCChHHHHHHHHHhhhhhcCc
Q psy2103 91 GFSDKFALKRHRLIHEKYARNS 112 (203)
Q Consensus 91 ~f~~~~~L~~H~~~~~~~~~~~ 112 (203)
.|.+...-..|+-..|..+.+.
T Consensus 155 KFkT~r~RkdH~I~~Hk~Pa~f 176 (253)
T KOG4173|consen 155 KFKTSRDRKDHMIRMHKYPADF 176 (253)
T ss_pred hhhhhhhhhhHHHHhccCCcce
Confidence 9999999999987777655444
No 48
>KOG2231|consensus
Probab=96.43 E-value=0.0036 Score=54.26 Aligned_cols=79 Identities=25% Similarity=0.468 Sum_probs=51.4
Q ss_pred eecccccccc---------------cChhhHHHHHHHhcCCCCeeCcchh---------hhccChhHHHhhhhcCCcccc
Q psy2103 22 YQCEVCEKTF---------------ARHSTLWNHRRIHTGEKPYRCSICG---------SAFNQATHLKNHAKVGKCKVH 77 (203)
Q Consensus 22 ~~C~~C~~~f---------------~~~~~L~~H~~~h~~~~~~~C~~C~---------~~f~~~~~l~~H~~~~~~~~~ 77 (203)
+.|.+|+..| .+...|+.||...|+. +.|..|- ...-+...|..|++.. -
T Consensus 100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~~--~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~g----d 173 (669)
T KOG2231|consen 100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHKL--HLCSLCLQNLKIFINERKLYTRAELNLHLMFG----D 173 (669)
T ss_pred hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhhh--hccccccccceeeeeeeehehHHHHHHHHhcC----C
Confidence 5677777766 3778899998655442 4444443 2234566777787632 1
Q ss_pred CCCC----CcccCCCCccCCChHHHHHHHHHhh
Q psy2103 78 TGEK----PHHCDICDVGFSDKFALKRHRLIHE 106 (203)
Q Consensus 78 ~~~~----~~~C~~C~~~f~~~~~L~~H~~~~~ 106 (203)
.++. --.|..|...|-....|.+|++.+|
T Consensus 174 ~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h 206 (669)
T KOG2231|consen 174 PDDESCRGHPLCKFCHERFLDDDELYRHLRFDH 206 (669)
T ss_pred CccccccCCccchhhhhhhccHHHHHHhhccce
Confidence 1222 2578889999999999999988665
No 49
>KOG1146|consensus
Probab=96.41 E-value=0.0012 Score=60.54 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=68.3
Q ss_pred CcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCCCCCCCCCC
Q psy2103 52 CSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTTPPQSTPTH 131 (203)
Q Consensus 52 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (203)
|..|+..+.+...+..|+.. .+.-.+.+.|+.|+..|+....|..|++..|.......+..... .........
T Consensus 439 ~~~~e~~~~s~r~~~~~t~~----L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~---~~~~arg~~ 511 (1406)
T KOG1146|consen 439 LTKAEPLLESKRSLEGQTVV----LHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQN---HPRLARGEV 511 (1406)
T ss_pred ccchhhhhhhhcccccceee----eecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccc---ccccccccc
Confidence 44456666666666666652 45555889999999999999999999998765554422211111 111111111
Q ss_pred CCCCCcccccchhhHhHHHHHHHHHHHhh
Q psy2103 132 SSSQLEEWKCESSRLIFEAWAKLQKELLS 160 (203)
Q Consensus 132 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 160 (203)
-.....+|.|..|...+....+|.+|+..
T Consensus 512 ~~~~~~p~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 512 YRCPGKPYPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred ccCCCCcccceeeeeeeecchHHHHHHHH
Confidence 22235789999999999999999999866
No 50
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.36 E-value=0.00069 Score=33.37 Aligned_cols=20 Identities=30% Similarity=0.798 Sum_probs=9.8
Q ss_pred eecccccccccChhhHHHHH
Q psy2103 22 YQCEVCEKTFARHSTLWNHR 41 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~ 41 (203)
|.|.+|++.|.+...|..|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~ 21 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHM 21 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCT
T ss_pred CCcccCCCCcCCHHHHHHHH
Confidence 34555555555555544444
No 51
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.05 E-value=0.003 Score=31.03 Aligned_cols=21 Identities=33% Similarity=0.797 Sum_probs=16.6
Q ss_pred eeCcchhhhccChhHHHhhhh
Q psy2103 50 YRCSICGSAFNQATHLKNHAK 70 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~ 70 (203)
|.|..|++.|.+...|..|++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~ 22 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMK 22 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTT
T ss_pred CCcccCCCCcCCHHHHHHHHc
Confidence 568888888888888888875
No 52
>KOG2482|consensus
Probab=96.03 E-value=0.0081 Score=47.58 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=89.8
Q ss_pred hHHHHHHHHhCC-CCceeccccccccc-ChhhHHHHHHHhcCC----------------------CCeeCcchhhhccCh
Q psy2103 7 PHLKNHERIHSG-ERPYQCEVCEKTFA-RHSTLWNHRRIHTGE----------------------KPYRCSICGSAFNQA 62 (203)
Q Consensus 7 ~~l~~H~~~h~~-~~~~~C~~C~~~f~-~~~~L~~H~~~h~~~----------------------~~~~C~~C~~~f~~~ 62 (203)
.+|+.+++.-.+ ...-+|-.|+..+. ..+..-.|+-.-|+- ..++|..|.+.|..+
T Consensus 129 eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdk 208 (423)
T KOG2482|consen 129 EALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDK 208 (423)
T ss_pred HHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCc
Confidence 456666655432 22356888876655 445566665433321 127888888888888
Q ss_pred hHHHhhhhcC-Cccc---------------------------c---------------------CCCCC--cccCCCCcc
Q psy2103 63 THLKNHAKVG-KCKV---------------------------H---------------------TGEKP--HHCDICDVG 91 (203)
Q Consensus 63 ~~l~~H~~~~-~~~~---------------------------~---------------------~~~~~--~~C~~C~~~ 91 (203)
..|+.||+.- |.+. + .+..+ .+|-.|...
T Consensus 209 ntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~ 288 (423)
T KOG2482|consen 209 NTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNF 288 (423)
T ss_pred HHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccc
Confidence 8888888631 1100 0 00112 589999999
Q ss_pred CCChHHHHHHHHHhhhhhcCccccCC-CCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhhc
Q psy2103 92 FSDKFALKRHRLIHEKYARNSTVNQS-HDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 92 f~~~~~L~~H~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
+.+...|..||+.-|...-....... ...-...... ...-.......|..|+..|.....|..||.-+
T Consensus 289 ~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~Yqrvrvi--NyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~ 357 (423)
T KOG2482|consen 289 YENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVI--NYIRKQKKKSRCAECDLSFWKEPGLLIHMVED 357 (423)
T ss_pred hhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHH--HHHHHHhhccccccccccccCcchhhhhcccc
Confidence 99999999999988865422211110 0000000000 00000123357999999999999999999764
No 53
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.92 E-value=0.012 Score=46.72 Aligned_cols=80 Identities=24% Similarity=0.475 Sum_probs=55.8
Q ss_pred ceeccc--ccccccChhhHHHHHHHhcCCCCeeCcchh---hhc------cChhHHHhhhhcCCccccCCCCC----ccc
Q psy2103 21 PYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICG---SAF------NQATHLKNHAKVGKCKVHTGEKP----HHC 85 (203)
Q Consensus 21 ~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~---~~f------~~~~~l~~H~~~~~~~~~~~~~~----~~C 85 (203)
.|.|+. |..+......|..|.+..|+. +.|.+|- +.| -++..|+.|.. .-..+.. -.|
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~-----~G~~e~GFKGHP~C 223 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKN-----GGLEEEGFKGHPLC 223 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeeccccccccc-----CCccccCcCCCchh
Confidence 377886 777777788899998877763 6787775 223 23455777764 2222222 379
Q ss_pred CCCCccCCChHHHHHHHHHhhh
Q psy2103 86 DICDVGFSDKFALKRHRLIHEK 107 (203)
Q Consensus 86 ~~C~~~f~~~~~L~~H~~~~~~ 107 (203)
..|...|-..+.|..|++..|.
T Consensus 224 ~FC~~~FYdDDEL~~HcR~~HE 245 (493)
T COG5236 224 IFCKIYFYDDDELRRHCRLRHE 245 (493)
T ss_pred hhccceecChHHHHHHHHhhhh
Confidence 9999999999999999877553
No 54
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=95.42 E-value=0.012 Score=28.32 Aligned_cols=20 Identities=25% Similarity=0.707 Sum_probs=14.9
Q ss_pred eecccccccccChhhHHHHHH
Q psy2103 22 YQCEVCEKTFARHSTLWNHRR 42 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~ 42 (203)
.+|+.||+.| ....|..|+.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 4688888888 5667888865
No 55
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=95.39 E-value=0.047 Score=36.64 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=24.3
Q ss_pred ccccc----chhhHhHHHHHHHHHHHhhccC
Q psy2103 137 EEWKC----ESSRLIFEAWAKLQKELLSQSG 163 (203)
Q Consensus 137 ~~~~C----~~C~~~f~~~~~l~~H~~~h~~ 163 (203)
.-|.| ..|++.+.+...+..|.+.++|
T Consensus 79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 44899 9999999999999999998775
No 56
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.05 E-value=0.04 Score=43.91 Aligned_cols=90 Identities=26% Similarity=0.420 Sum_probs=64.4
Q ss_pred hhHHHHHHHHhCCCCc----eecccccccccChhhHHHHHHHhcCCCCeeCcchh-------hhccChhHHHhhhhcCCc
Q psy2103 6 SPHLKNHERIHSGERP----YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICG-------SAFNQATHLKNHAKVGKC 74 (203)
Q Consensus 6 ~~~l~~H~~~h~~~~~----~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~-------~~f~~~~~l~~H~~~~~~ 74 (203)
++.|+.|......+.- -.|..|...|-+...|..|++..|. .|-+|+ .-|++..+|..|.+.
T Consensus 201 ~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~--- 273 (493)
T COG5236 201 SSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRN--- 273 (493)
T ss_pred cccccccccCCccccCcCCCchhhhccceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhc---
Confidence 3567777765443312 2599999999999999999997765 366665 348999999999962
Q ss_pred cccCCCCCcccCC--CC----ccCCChHHHHHHHHHhhhh
Q psy2103 75 KVHTGEKPHHCDI--CD----VGFSDKFALKRHRLIHEKY 108 (203)
Q Consensus 75 ~~~~~~~~~~C~~--C~----~~f~~~~~L~~H~~~~~~~ 108 (203)
.| |.|.. |. ..|.....|..|+..-|+.
T Consensus 274 -~h-----y~ct~qtc~~~k~~vf~~~~el~~h~~~~h~~ 307 (493)
T COG5236 274 -AH-----YCCTFQTCRVGKCYVFPYHTELLEHLTRFHKV 307 (493)
T ss_pred -Cc-----eEEEEEEEecCcEEEeccHHHHHHHHHHHhhc
Confidence 22 55543 32 4799999999998776643
No 57
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.85 E-value=0.0069 Score=50.02 Aligned_cols=143 Identities=22% Similarity=0.327 Sum_probs=87.8
Q ss_pred CceecccccccccChhhHHHHHH--HhcCC--CCeeCc--chhhhccChhHHHhhhhcCCccccCCCCCcccCC--CCcc
Q psy2103 20 RPYQCEVCEKTFARHSTLWNHRR--IHTGE--KPYRCS--ICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI--CDVG 91 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~~~L~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~--C~~~ 91 (203)
.++.|..|...|.....|..|.+ .|.++ +++.|+ .|++.|.....+..|.. .+.+...+.+.. +...
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 362 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHIL-----LHTSISPAKEKLLNSSSK 362 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcc-----cccCCCccccccccCccc
Confidence 46889999999999999999999 78888 899999 79999999999999986 677766666654 4444
Q ss_pred CCChHHHHHHHHHhhh--hhcCcc-------ccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhhcc
Q psy2103 92 FSDKFALKRHRLIHEK--YARNST-------VNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLSQS 162 (203)
Q Consensus 92 f~~~~~L~~H~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~ 162 (203)
+.....-..+...... ...... +.................-......+.+..|...|.....+..|++.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (467)
T COG5048 363 FSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442 (467)
T ss_pred cccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccc
Confidence 4433321111111110 000000 0000000011111111122222346788999999999999999999886
Q ss_pred CCCcc
Q psy2103 163 GYPYH 167 (203)
Q Consensus 163 ~~~~~ 167 (203)
....-
T Consensus 443 ~~~~~ 447 (467)
T COG5048 443 NHAPL 447 (467)
T ss_pred cCCce
Confidence 55433
No 58
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=94.59 E-value=0.014 Score=30.32 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=22.0
Q ss_pred cccccchhhHhHHHHHHHHHHHhhc
Q psy2103 137 EEWKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 137 ~~~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
+.|.|+.|+..|.+...+..|+...
T Consensus 2 ~~~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 2 GGFYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred cCeEccccCCccCCHHHHHHHHChH
Confidence 4588999999999999999998763
No 59
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=94.56 E-value=0.029 Score=32.22 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=24.2
Q ss_pred CcccccchhhHhHHHHHHHHHHHhhccC
Q psy2103 136 LEEWKCESSRLIFEAWAKLQKELLSQSG 163 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 163 (203)
...++|+.||..|....++.+|...-++
T Consensus 15 E~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 15 EEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred ceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 4678999999999999999999876544
No 60
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=94.49 E-value=0.027 Score=29.21 Aligned_cols=22 Identities=23% Similarity=0.616 Sum_probs=16.5
Q ss_pred ceecccccccccChhhHHHHHH
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRR 42 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~ 42 (203)
+|.|.+|+..|.+...+..|+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4678888888887777777764
No 61
>PRK04860 hypothetical protein; Provisional
Probab=94.49 E-value=0.022 Score=40.98 Aligned_cols=39 Identities=36% Similarity=0.876 Sum_probs=33.8
Q ss_pred ceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChh
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQAT 63 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~ 63 (203)
+|.|. |+. ....+.+|.++|.++++|.|..|+..|....
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence 49998 987 6778999999999999999999998886543
No 62
>KOG2785|consensus
Probab=94.43 E-value=0.044 Score=44.20 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=40.4
Q ss_pred cccchhhHhHHHHHHHHHHHhhccCCCcccccccccc--chhhhhhhhccc-hhhhhh---hcccccc
Q psy2103 139 WKCESSRLIFEAWAKLQKELLSQSGYPYHKLQSWRLS--SEYRLDALCSIN-TIKLCR---KENQSVT 200 (203)
Q Consensus 139 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~--~~~~~d~~~~~~-~~~~c~---k~~~~~~ 200 (203)
-.|=.|+..|.+...-..||-.++|....+.+=..+. ...-+...+.+. .|=.|. +.+.||.
T Consensus 167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sle 234 (390)
T KOG2785|consen 167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLE 234 (390)
T ss_pred cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccH
Confidence 5689999999999999999999999865553322222 223334444444 333466 6666653
No 63
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.36 E-value=0.049 Score=26.15 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=12.5
Q ss_pred cccCCCCccCCChHHHHHHHH
Q psy2103 83 HHCDICDVGFSDKFALKRHRL 103 (203)
Q Consensus 83 ~~C~~C~~~f~~~~~L~~H~~ 103 (203)
..|+.|++.| ..+.|..|+.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 4566777777 5556666654
No 64
>KOG2893|consensus
Probab=94.23 E-value=0.012 Score=44.34 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=30.5
Q ss_pred CcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHH-HHHhh
Q psy2103 52 CSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRH-RLIHE 106 (203)
Q Consensus 52 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~~~ 106 (203)
|=+|++.|.....|.+|++ .+-|+|.+|.+..-+--.|..| ++.|.
T Consensus 13 cwycnrefddekiliqhqk---------akhfkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQK---------AKHFKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred eeecccccchhhhhhhhhh---------hccceeeeehhhhccCCCceeehhhhhh
Confidence 6667777777777777765 2447777777766666666666 45554
No 65
>KOG2482|consensus
Probab=94.12 E-value=0.032 Score=44.33 Aligned_cols=85 Identities=26% Similarity=0.480 Sum_probs=65.2
Q ss_pred eecccccccccChhhHHHHHHHhcC------------------------------------------------------C
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHTG------------------------------------------------------E 47 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~~------------------------------------------------------~ 47 (203)
+.|-+|.+.|..+..|..||+.... .
T Consensus 196 ~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a 275 (423)
T KOG2482|consen 196 LRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDA 275 (423)
T ss_pred heeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCC
Confidence 7899999999999999999986411 0
Q ss_pred C--CeeCcchhhhccChhHHHhhhhcCCc----cccC------------------CCCCcccCCCCccCCChHHHHHHHH
Q psy2103 48 K--PYRCSICGSAFNQATHLKNHAKVGKC----KVHT------------------GEKPHHCDICDVGFSDKFALKRHRL 103 (203)
Q Consensus 48 ~--~~~C~~C~~~f~~~~~l~~H~~~~~~----~~~~------------------~~~~~~C~~C~~~f~~~~~L~~H~~ 103 (203)
- ..+|..|.....+...|..||+..|. +... ....-.|-.|.-.|.....|..|+.
T Consensus 276 ~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~ 355 (423)
T KOG2482|consen 276 EALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV 355 (423)
T ss_pred CccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence 0 15899999999999999999986552 0000 1123478889999999999999987
Q ss_pred Hhh
Q psy2103 104 IHE 106 (203)
Q Consensus 104 ~~~ 106 (203)
.+.
T Consensus 356 e~k 358 (423)
T KOG2482|consen 356 EDK 358 (423)
T ss_pred ccc
Confidence 653
No 66
>KOG4173|consensus
Probab=93.84 E-value=0.048 Score=40.27 Aligned_cols=88 Identities=16% Similarity=0.407 Sum_probs=64.8
Q ss_pred CeeCcc--hhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHHHHhhh-hhcCccccCCCCCCCCCC
Q psy2103 49 PYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEK-YARNSTVNQSHDSQTTPP 125 (203)
Q Consensus 49 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~-~~~~~~~~~~~~~~~~~~ 125 (203)
.|.|++ |...|.+..++..|-.+ .|. -.|..|.+.|.+...|..|+..-|. .-.....
T Consensus 79 ~~~cqvagc~~~~d~lD~~E~hY~~----~h~----~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~ve----------- 139 (253)
T KOG4173|consen 79 AFACQVAGCCQVFDALDDYEHHYHT----LHG----NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVE----------- 139 (253)
T ss_pred cccccccchHHHHhhhhhHHHhhhh----ccc----chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHH-----------
Confidence 377988 88999999988888752 232 4699999999999999999765443 2111110
Q ss_pred CCCCCCCCCCCccccc--chhhHhHHHHHHHHHHHhhccC
Q psy2103 126 QSTPTHSSSQLEEWKC--ESSRLIFEAWAKLQKELLSQSG 163 (203)
Q Consensus 126 ~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~ 163 (203)
....+|.| +.|+..|.....-..||-.-+.
T Consensus 140 --------RG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 140 --------RGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHK 171 (253)
T ss_pred --------cCccHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence 01367999 8899999999999999865444
No 67
>KOG2186|consensus
Probab=93.66 E-value=0.049 Score=41.51 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=39.9
Q ss_pred ceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhh
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAK 70 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 70 (203)
-|.|.+||...+-+ .+..||..-++ .-|.|..|+.+|.. .++..|.+
T Consensus 3 ~FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 3 FFTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred EEehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence 48999999998854 58889988888 47999999999998 77888874
No 68
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=92.79 E-value=0.06 Score=30.93 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.5
Q ss_pred ccCCCCCcccCCCCccCCChHHHHHHHHHhhhh
Q psy2103 76 VHTGEKPHHCDICDVGFSDKFALKRHRLIHEKY 108 (203)
Q Consensus 76 ~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~ 108 (203)
.-.|+..+.||-|+..|+......+|....|+.
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 456777788888888888888888887776654
No 69
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=92.02 E-value=0.09 Score=27.08 Aligned_cols=24 Identities=33% Similarity=1.063 Sum_probs=15.5
Q ss_pred eecccccccccChhhHHHHHHHhcCCCCeeCcchhh
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGS 57 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~ 57 (203)
|.|.+||..+.... .++.|+.|+.
T Consensus 2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE------------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc------------CCCcCcCCCC
Confidence 67777777665433 3567777764
No 70
>KOG2231|consensus
Probab=91.68 E-value=0.33 Score=42.55 Aligned_cols=93 Identities=22% Similarity=0.374 Sum_probs=53.7
Q ss_pred CCChhHHHHHHHHhCCCCceecccccc---------cccChhhHHHHHHHhcC-C----CCeeCcchhhhccChhHHHhh
Q psy2103 3 FSQSPHLKNHERIHSGERPYQCEVCEK---------TFARHSTLWNHRRIHTG-E----KPYRCSICGSAFNQATHLKNH 68 (203)
Q Consensus 3 F~~~~~l~~H~~~h~~~~~~~C~~C~~---------~f~~~~~L~~H~~~h~~-~----~~~~C~~C~~~f~~~~~l~~H 68 (203)
|.+...|+.||..-| +.+.|.+|-. ..-+...|.+|+..--. + ..-.|..|...|.....|..|
T Consensus 124 ~~s~~~Lk~H~~~~H--~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH 201 (669)
T KOG2231|consen 124 FKSVENLKNHMRDQH--KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRH 201 (669)
T ss_pred hhHHHHHHHHHHHhh--hhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHh
Confidence 445677888885433 2355665542 22245667777654321 1 124688888888888888888
Q ss_pred hhcCCccccCCCCCcccCCC------CccCCChHHHHHHHHHhh
Q psy2103 69 AKVGKCKVHTGEKPHHCDIC------DVGFSDKFALKRHRLIHE 106 (203)
Q Consensus 69 ~~~~~~~~~~~~~~~~C~~C------~~~f~~~~~L~~H~~~~~ 106 (203)
++.+| |.|..| ...|.....|..|.+.+|
T Consensus 202 ~~~~h---------~~chfC~~~~~~neyy~~~~dLe~HfR~~H 236 (669)
T KOG2231|consen 202 LRFDH---------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH 236 (669)
T ss_pred hccce---------eheeecCcccccchhcccchHHHHHhhhcC
Confidence 86322 333333 345566666666655544
No 71
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=91.17 E-value=0.35 Score=32.35 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=48.1
Q ss_pred CceecccccccccChhhHHHHHHHhcCCC-CeeCcchhhhccChhHHHhhhhcCCcc--------ccCCCCCccc----C
Q psy2103 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK-PYRCSICGSAFNQATHLKNHAKVGKCK--------VHTGEKPHHC----D 86 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~-~~~C~~C~~~f~~~~~l~~H~~~~~~~--------~~~~~~~~~C----~ 86 (203)
+...|..|...... .++..|++..+... ...-..=...+.....|..-...--.. --.....|.| .
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~ 88 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPP 88 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCC
Confidence 34679999987776 88999998554321 111111111111111111100000000 0011134899 9
Q ss_pred CCCccCCChHHHHHHHHHhhh
Q psy2103 87 ICDVGFSDKFALKRHRLIHEK 107 (203)
Q Consensus 87 ~C~~~f~~~~~L~~H~~~~~~ 107 (203)
.|++.+.+...|++|++.+|+
T Consensus 89 ~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 89 HCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCCcEeccHHHHHHHHHHhcC
Confidence 999999999999999998874
No 72
>KOG2893|consensus
Probab=89.91 E-value=0.11 Score=39.32 Aligned_cols=45 Identities=24% Similarity=0.558 Sum_probs=36.7
Q ss_pred ecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhc
Q psy2103 23 QCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKV 71 (203)
Q Consensus 23 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~ 71 (203)
.|.+|++.|....-|.+|++. +.|+|.+|-+..-+--.|..|-.+
T Consensus 12 wcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmq 56 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQ 56 (341)
T ss_pred eeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhh
Confidence 699999999999999999874 459999999876666667777543
No 73
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=89.69 E-value=0.059 Score=44.46 Aligned_cols=53 Identities=40% Similarity=0.713 Sum_probs=45.4
Q ss_pred CCCChhHHHHHHH--HhCCC--Cceecc--cccccccChhhHHHHHHHhcCCCCeeCcc
Q psy2103 2 LFSQSPHLKNHER--IHSGE--RPYQCE--VCEKTFARHSTLWNHRRIHTGEKPYRCSI 54 (203)
Q Consensus 2 ~F~~~~~l~~H~~--~h~~~--~~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~ 54 (203)
.|.....|.+|.. .|.++ +++.|+ .|++.|.....+..|...|.+..++.+..
T Consensus 298 ~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (467)
T COG5048 298 SFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKL 356 (467)
T ss_pred CccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccccc
Confidence 4677788999999 79999 999999 79999999999999999998876555544
No 74
>KOG4167|consensus
Probab=88.87 E-value=0.47 Score=41.72 Aligned_cols=30 Identities=7% Similarity=0.108 Sum_probs=26.5
Q ss_pred CcccccchhhHhHHHHHHHHHHHhhccCCC
Q psy2103 136 LEEWKCESSRLIFEAWAKLQKELLSQSGYP 165 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~ 165 (203)
.+.|.|..|+++|..-.+++.||++|.-..
T Consensus 790 ~giFpCreC~kvF~KiKSrNAHMK~Hr~q~ 819 (907)
T KOG4167|consen 790 TGIFPCRECGKVFFKIKSRNAHMKTHRQQE 819 (907)
T ss_pred CceeehHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467999999999999999999999996443
No 75
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=88.20 E-value=0.34 Score=25.62 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=6.3
Q ss_pred CCcccCCCCccC
Q psy2103 81 KPHHCDICDVGF 92 (203)
Q Consensus 81 ~~~~C~~C~~~f 92 (203)
...+|+.|+..|
T Consensus 24 ~~vrC~~C~~~f 35 (37)
T PF13719_consen 24 RKVRCPKCGHVF 35 (37)
T ss_pred cEEECCCCCcEe
Confidence 345555555544
No 76
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=88.15 E-value=0.33 Score=32.49 Aligned_cols=30 Identities=27% Similarity=0.717 Sum_probs=23.2
Q ss_pred eeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCCh
Q psy2103 50 YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDK 95 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~ 95 (203)
..|+.||..|. -.+..|..|+.||..|...
T Consensus 10 R~Cp~CG~kFY----------------DLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFY----------------DLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhc----------------cCCCCCccCCCCCCccCcc
Confidence 57999999883 2334678899999998866
No 77
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=87.69 E-value=0.43 Score=25.05 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=6.2
Q ss_pred CCcccCCCCccC
Q psy2103 81 KPHHCDICDVGF 92 (203)
Q Consensus 81 ~~~~C~~C~~~f 92 (203)
...+|+.|+..|
T Consensus 24 ~~v~C~~C~~~f 35 (36)
T PF13717_consen 24 RKVRCSKCGHVF 35 (36)
T ss_pred cEEECCCCCCEe
Confidence 345555555544
No 78
>KOG2785|consensus
Probab=87.29 E-value=0.55 Score=38.12 Aligned_cols=51 Identities=20% Similarity=0.418 Sum_probs=41.3
Q ss_pred CceecccccccccChhhHHHHHHHhcCC-----------------------CCeeCcchh---hhccChhHHHhhhh
Q psy2103 20 RPYQCEVCEKTFARHSTLWNHRRIHTGE-----------------------KPYRCSICG---SAFNQATHLKNHAK 70 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~ 70 (203)
.|-.|-.|+..+++...-..||..+|+- ..+.|..|+ +.|.+..+.+.||.
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~ 241 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR 241 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence 3567999999999999999999998873 236777777 77888888888875
No 79
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=86.00 E-value=0.82 Score=32.84 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=16.4
Q ss_pred CceecccccccccChhhHHHHHHHhcCCCCeeCcchhhh
Q psy2103 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSA 58 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~ 58 (203)
.-|.|+.|+.+|+...++. ..|.|+.||..
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAME---------LNFTCPRCGAM 137 (158)
T ss_pred CeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence 3466666666666555543 13566666643
No 80
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.87 E-value=0.16 Score=38.44 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=10.7
Q ss_pred CceecccccccccChhh
Q psy2103 20 RPYQCEVCEKTFARHST 36 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~~~ 36 (203)
+.+.|++|+..|.+..-
T Consensus 4 k~~~CPvC~~~F~~~~v 20 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKV 20 (214)
T ss_pred CceECCCCCCeeeeeEE
Confidence 44667777777766543
No 81
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=85.71 E-value=0.5 Score=24.97 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=5.5
Q ss_pred ecccccccccCh
Q psy2103 23 QCEVCEKTFARH 34 (203)
Q Consensus 23 ~C~~C~~~f~~~ 34 (203)
.|+.|+..|.-.
T Consensus 4 ~CP~C~~~~~v~ 15 (38)
T TIGR02098 4 QCPNCKTSFRVV 15 (38)
T ss_pred ECCCCCCEEEeC
Confidence 444454444433
No 82
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=84.05 E-value=0.72 Score=33.30 Aligned_cols=25 Identities=44% Similarity=1.112 Sum_probs=20.0
Q ss_pred CCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCc
Q psy2103 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDV 90 (203)
Q Consensus 48 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~ 90 (203)
+.|+|++||+. +.++.|-+||+|+-
T Consensus 133 ~~~vC~vCGy~------------------~~ge~P~~CPiCga 157 (166)
T COG1592 133 KVWVCPVCGYT------------------HEGEAPEVCPICGA 157 (166)
T ss_pred CEEEcCCCCCc------------------ccCCCCCcCCCCCC
Confidence 36999999874 44578899999984
No 83
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=83.94 E-value=0.57 Score=24.27 Aligned_cols=25 Identities=32% Similarity=0.866 Sum_probs=15.5
Q ss_pred ceecccccccccChhhHHHHHHHhcCCCCeeCcchhh
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGS 57 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~ 57 (203)
.|.|.+||..+.... .|..|++|+.
T Consensus 2 ~~~C~~CG~i~~g~~------------~p~~CP~Cg~ 26 (34)
T cd00729 2 VWVCPVCGYIHEGEE------------APEKCPICGA 26 (34)
T ss_pred eEECCCCCCEeECCc------------CCCcCcCCCC
Confidence 367778876655432 2457777774
No 84
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.91 E-value=0.44 Score=36.08 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCeeCcchhhhccChhHHHhhhhcCCc-----cccCCCC-----CcccCCCCccCCCh
Q psy2103 48 KPYRCSICGSAFNQATHLKNHAKVGKC-----KVHTGEK-----PHHCDICDVGFSDK 95 (203)
Q Consensus 48 ~~~~C~~C~~~f~~~~~l~~H~~~~~~-----~~~~~~~-----~~~C~~C~~~f~~~ 95 (203)
+.+.|++|+..|.+..-+....+.-.. ..-.+.. ...||.||+.+...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 568999999999988766655532110 0011122 24999999988755
No 85
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=82.83 E-value=1.8 Score=30.66 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=5.9
Q ss_pred CeeCcchhhhcc
Q psy2103 49 PYRCSICGSAFN 60 (203)
Q Consensus 49 ~~~C~~C~~~f~ 60 (203)
.|.|+.|+..|.
T Consensus 99 ~Y~Cp~C~~~y~ 110 (147)
T smart00531 99 YYKCPNCQSKYT 110 (147)
T ss_pred EEECcCCCCEee
Confidence 355555554444
No 86
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=82.16 E-value=1.1 Score=31.08 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=16.6
Q ss_pred eecccccccccChhhHHHHHHHhcCC
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHTGE 47 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~~~ 47 (203)
..|-+||+.|+. |.+|++.|+|-
T Consensus 73 i~clecGk~~k~---LkrHL~~~~gl 95 (132)
T PF05443_consen 73 IICLECGKKFKT---LKRHLRTHHGL 95 (132)
T ss_dssp EE-TBT--EESB---HHHHHHHTT-S
T ss_pred eEEccCCcccch---HHHHHHHccCC
Confidence 789999999997 68999999874
No 87
>KOG0717|consensus
Probab=81.66 E-value=3.3 Score=34.76 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=22.4
Q ss_pred ccccchhhHhHHHHHHHHHHHhh-ccCC
Q psy2103 138 EWKCESSRLIFEAWAKLQKELLS-QSGY 164 (203)
Q Consensus 138 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~ 164 (203)
...|..|+.+|.+...|-.|+.. -|+.
T Consensus 460 ~~~C~tCr~~FdSRnkLF~Hlk~tgHa~ 487 (508)
T KOG0717|consen 460 LISCTTCRESFDSRNKLFAHLKKTGHAR 487 (508)
T ss_pred hHhhhhhhhhccchhHHHHHhhhcCCee
Confidence 36799999999999999999865 3444
No 88
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=81.38 E-value=1.3 Score=32.49 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=7.7
Q ss_pred CeeCcchhhhccChhH
Q psy2103 49 PYRCSICGSAFNQATH 64 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~ 64 (203)
.|.|+.|+..|+...+
T Consensus 117 ~Y~Cp~C~~rytf~eA 132 (178)
T PRK06266 117 FFFCPNCHIRFTFDEA 132 (178)
T ss_pred EEECCCCCcEEeHHHH
Confidence 4555555544444443
No 89
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=81.27 E-value=1.4 Score=24.11 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=13.7
Q ss_pred CCCCcccCCCCccCCCh----HHHHHHHHH
Q psy2103 79 GEKPHHCDICDVGFSDK----FALKRHRLI 104 (203)
Q Consensus 79 ~~~~~~C~~C~~~f~~~----~~L~~H~~~ 104 (203)
+.....|..|++.+... ..|.+|++.
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~ 42 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKK 42 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence 34556777777766654 677777743
No 90
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=81.09 E-value=1.2 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.600 Sum_probs=17.2
Q ss_pred ceecccccccccChhhHHHHHHHhcCCCCeeCcchhhh
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSA 58 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~ 58 (203)
.|.|..||..|... ...+.+|+.||..
T Consensus 2 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~r 28 (44)
T smart00659 2 IYICGECGRENEIK-----------SKDVVRCRECGYR 28 (44)
T ss_pred EEECCCCCCEeecC-----------CCCceECCCCCce
Confidence 37788888776643 1235778877754
No 91
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=80.15 E-value=0.71 Score=25.62 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=18.2
Q ss_pred ceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhc
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 59 (203)
.|.|+.||..|....... .+.|+.||..+
T Consensus 3 ~y~C~~CG~~~~~~~~~~----------~~~Cp~CG~~~ 31 (46)
T PRK00398 3 EYKCARCGREVELDEYGT----------GVRCPYCGYRI 31 (46)
T ss_pred EEECCCCCCEEEECCCCC----------ceECCCCCCeE
Confidence 477888887776543211 46788887544
No 92
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=80.05 E-value=0.91 Score=25.45 Aligned_cols=14 Identities=29% Similarity=1.137 Sum_probs=7.4
Q ss_pred eeCcchhhhccChh
Q psy2103 50 YRCSICGSAFNQAT 63 (203)
Q Consensus 50 ~~C~~C~~~f~~~~ 63 (203)
|+|..|++.+....
T Consensus 2 y~C~~CgyvYd~~~ 15 (47)
T PF00301_consen 2 YQCPVCGYVYDPEK 15 (47)
T ss_dssp EEETTTSBEEETTT
T ss_pred cCCCCCCEEEcCCc
Confidence 45556665554443
No 93
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=79.50 E-value=2.4 Score=30.04 Aligned_cols=38 Identities=16% Similarity=0.509 Sum_probs=25.9
Q ss_pred CCCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhc
Q psy2103 18 GERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59 (203)
Q Consensus 18 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 59 (203)
+..-|.|+.|+..|.....+.. .. ....|.|+.||...
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~---~d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQL---LD-MDGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHh---cC-CCCcEECCCCCCEE
Confidence 4456999999999996554432 01 23349999999765
No 94
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=79.39 E-value=0.82 Score=25.99 Aligned_cols=12 Identities=42% Similarity=1.276 Sum_probs=6.9
Q ss_pred eeCcchhhhccC
Q psy2103 50 YRCSICGSAFNQ 61 (203)
Q Consensus 50 ~~C~~C~~~f~~ 61 (203)
|+|..|++.+..
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 456666666553
No 95
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=78.64 E-value=1.7 Score=35.02 Aligned_cols=24 Identities=13% Similarity=0.422 Sum_probs=20.4
Q ss_pred cccccchhh-HhHHHHHHHHHHHhh
Q psy2103 137 EEWKCESSR-LIFEAWAKLQKELLS 160 (203)
Q Consensus 137 ~~~~C~~C~-~~f~~~~~l~~H~~~ 160 (203)
..|.|.+|| +++.....+.+|..-
T Consensus 373 ~ef~CEICgNyvy~GR~~FdrHF~E 397 (470)
T COG5188 373 IEFECEICGNYVYYGRDRFDRHFEE 397 (470)
T ss_pred cceeeeecccccccchHHHHhhhhh
Confidence 468999999 899999999999643
No 96
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=78.40 E-value=1.5 Score=30.00 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.7
Q ss_pred eeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHH
Q psy2103 50 YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFA 97 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~ 97 (203)
..|+.|++.|. -.+..+..|+.||..|.....
T Consensus 10 r~Cp~cg~kFY----------------DLnk~p~vcP~cg~~~~~~~~ 41 (129)
T TIGR02300 10 RICPNTGSKFY----------------DLNRRPAVSPYTGEQFPPEEA 41 (129)
T ss_pred ccCCCcCcccc----------------ccCCCCccCCCcCCccCcchh
Confidence 57999998883 333467899999999876633
No 97
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=78.01 E-value=0.67 Score=26.36 Aligned_cols=12 Identities=33% Similarity=1.024 Sum_probs=6.5
Q ss_pred eecccccccccC
Q psy2103 22 YQCEVCEKTFAR 33 (203)
Q Consensus 22 ~~C~~C~~~f~~ 33 (203)
|.|..|+..|..
T Consensus 6 y~C~~Cg~~fe~ 17 (52)
T TIGR02605 6 YRCTACGHRFEV 17 (52)
T ss_pred EEeCCCCCEeEE
Confidence 455555555553
No 98
>KOG2071|consensus
Probab=77.85 E-value=1.8 Score=37.32 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=25.3
Q ss_pred CCCCceecccccccccChhhHHHHHHHhcC
Q psy2103 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTG 46 (203)
Q Consensus 17 ~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~ 46 (203)
....+..|..||.+|........||..|..
T Consensus 414 y~~~pnqC~~CG~R~~~~ee~sk~md~H~d 443 (579)
T KOG2071|consen 414 YKDSPNQCKSCGLRFDDSEERSKHMDIHDD 443 (579)
T ss_pred ccCCcchhcccccccccchhhhhHhhhhhh
Confidence 456778999999999999998888887743
No 99
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=77.81 E-value=0.69 Score=24.72 Aligned_cols=12 Identities=50% Similarity=1.118 Sum_probs=6.1
Q ss_pred eecccccccccC
Q psy2103 22 YQCEVCEKTFAR 33 (203)
Q Consensus 22 ~~C~~C~~~f~~ 33 (203)
|.|..||..|..
T Consensus 6 y~C~~Cg~~fe~ 17 (41)
T smart00834 6 YRCEDCGHTFEV 17 (41)
T ss_pred EEcCCCCCEEEE
Confidence 455555555543
No 100
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=77.78 E-value=1.1 Score=24.36 Aligned_cols=12 Identities=50% Similarity=1.270 Sum_probs=6.6
Q ss_pred eeCcchhhhccC
Q psy2103 50 YRCSICGSAFNQ 61 (203)
Q Consensus 50 ~~C~~C~~~f~~ 61 (203)
|+|..||..|..
T Consensus 6 y~C~~Cg~~fe~ 17 (42)
T PF09723_consen 6 YRCEECGHEFEV 17 (42)
T ss_pred EEeCCCCCEEEE
Confidence 556666655543
No 101
>KOG4167|consensus
Probab=77.14 E-value=0.75 Score=40.55 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=23.2
Q ss_pred CceecccccccccChhhHHHHHHHhc
Q psy2103 20 RPYQCEVCEKTFARHSTLWNHRRIHT 45 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~~~L~~H~~~h~ 45 (203)
..|.|.+|++.|.-..++..||++|.
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 34999999999999999999999885
No 102
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=77.12 E-value=2.6 Score=30.24 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=27.1
Q ss_pred cCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCC
Q psy2103 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFS 93 (203)
Q Consensus 45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~ 93 (203)
.+..-|.|+.|+..|+...++. ..|.|+.||....
T Consensus 105 ~~~~~Y~Cp~c~~r~tf~eA~~--------------~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 105 TNNMFFICPNMCVRFTFNEAME--------------LNFTCPRCGAMLD 139 (158)
T ss_pred cCCCeEECCCCCcEeeHHHHHH--------------cCCcCCCCCCEee
Confidence 4456799999999988877754 2499999998644
No 103
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=76.67 E-value=1.1 Score=25.32 Aligned_cols=29 Identities=28% Similarity=0.730 Sum_probs=18.6
Q ss_pred CceecccccccccChhhHHHHHHHhcCCCCeeCcchhhh
Q psy2103 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSA 58 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~ 58 (203)
..|.|..||+.|.... ......|+.||..
T Consensus 5 ~~Y~C~~Cg~~~~~~~----------~~~~irCp~Cg~r 33 (49)
T COG1996 5 MEYKCARCGREVELDQ----------ETRGIRCPYCGSR 33 (49)
T ss_pred EEEEhhhcCCeeehhh----------ccCceeCCCCCcE
Confidence 3588888888883221 1225788888854
No 104
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=76.62 E-value=2.4 Score=23.91 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=17.7
Q ss_pred ceecccccccccCh-----hhHHHHHH
Q psy2103 21 PYQCEVCEKTFARH-----STLWNHRR 42 (203)
Q Consensus 21 ~~~C~~C~~~f~~~-----~~L~~H~~ 42 (203)
.-.|..|++.+... +.|.+|++
T Consensus 18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~ 44 (50)
T smart00614 18 RAKCKYCGKKLSRSSKGGTSNLRRHLR 44 (50)
T ss_pred EEEecCCCCEeeeCCCCCcHHHHHHHH
Confidence 46799999988765 58888887
No 105
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.24 E-value=3.6 Score=27.68 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=50.3
Q ss_pred CCceecccccccccChhhHHHHHHHhc--CCCC------------eeCcchhhhccChhHHHhhhhcCCccccCCCCCcc
Q psy2103 19 ERPYQCEVCEKTFARHSTLWNHRRIHT--GEKP------------YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHH 84 (203)
Q Consensus 19 ~~~~~C~~C~~~f~~~~~L~~H~~~h~--~~~~------------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~ 84 (203)
+-|..|++|+-+.-+...|.+- .|+ ...+ ..|..|...|....... + ..-.....|.
T Consensus 13 ~LP~~CpiCgLtLVss~HLARS--yHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~---~----~~~~~~~~y~ 83 (112)
T TIGR00622 13 ELPVECPICGLTLILSTHLARS--YHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP---F----DELKDSHRYV 83 (112)
T ss_pred CCCCcCCcCCCEEeccchHHHh--hhccCCCcccccccccccCCCCcccCcCCCCCCccccc---c----ccccccccee
Confidence 3577899999888877777753 232 1111 23888988886543211 0 0122345799
Q ss_pred cCCCCccCCChHHHHHHHHHh
Q psy2103 85 CDICDVGFSDKFALKRHRLIH 105 (203)
Q Consensus 85 C~~C~~~f~~~~~L~~H~~~~ 105 (203)
|+.|...|-..=.+..|-..|
T Consensus 84 C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 84 CAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred CCCCCCccccccchhhhhhcc
Confidence 999999998877777776655
No 106
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=74.75 E-value=2.7 Score=24.66 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=18.1
Q ss_pred CeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCc
Q psy2103 49 PYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDV 90 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~ 90 (203)
.|.|+.||..--.+..- .-....+|.|+.||.
T Consensus 27 ~F~CPnCGe~~I~Rc~~----------CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 27 KFPCPNCGEVEIYRCAK----------CRKLGNPYRCPKCGF 58 (61)
T ss_pred EeeCCCCCceeeehhhh----------HHHcCCceECCCcCc
Confidence 47788888543322221 112345788888875
No 107
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=74.75 E-value=7.9 Score=26.83 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=27.4
Q ss_pred cccccchhhHhHHHHHHHHHHHhhccCCCccc-ccccccc
Q psy2103 137 EEWKCESSRLIFEAWAKLQKELLSQSGYPYHK-LQSWRLS 175 (203)
Q Consensus 137 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~~~~~~~ 175 (203)
.-..|=++|+.|. +|.+|+.+|.+..+++ -.-|..+
T Consensus 75 D~IicLEDGkkfK---SLKRHL~t~~gmTPd~YR~KW~LP 111 (148)
T COG4957 75 DYIICLEDGKKFK---SLKRHLTTHYGLTPDEYRAKWGLP 111 (148)
T ss_pred CeEEEeccCcchH---HHHHHHhcccCCCHHHHHHhcCCC
Confidence 4568999999996 4899999999987665 3344444
No 108
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=74.25 E-value=3.5 Score=31.64 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=10.3
Q ss_pred cccccchhhHhHHHHH
Q psy2103 137 EEWKCESSRLIFEAWA 152 (203)
Q Consensus 137 ~~~~C~~C~~~f~~~~ 152 (203)
.+|.|..|+..|....
T Consensus 154 aef~C~~C~h~F~G~~ 169 (278)
T PF15135_consen 154 AEFHCPKCRHNFRGFA 169 (278)
T ss_pred eeeecccccccchhhh
Confidence 5567777777776543
No 109
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=74.12 E-value=2.5 Score=32.00 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCCCcccCCCCccCCChHHHHHHHHHhhh
Q psy2103 79 GEKPHHCDICDVGFSDKFALKRHRLIHEK 107 (203)
Q Consensus 79 ~~~~~~C~~C~~~f~~~~~L~~H~~~~~~ 107 (203)
.+..|.|+.|+|.|.-..-.+.|+...|.
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhcCH
Confidence 44459999999999999999999888773
No 110
>KOG3408|consensus
Probab=74.06 E-value=10 Score=25.80 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=25.7
Q ss_pred CCCCCcccccchhhHhHHHHHHHHHHHhhc
Q psy2103 132 SSSQLEEWKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 132 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
.-+..+-|.|-.|.+-|.+...|..|.++.
T Consensus 51 dlPG~GqfyCi~CaRyFi~~~~l~~H~ktK 80 (129)
T KOG3408|consen 51 DLPGGGQFYCIECARYFIDAKALKTHFKTK 80 (129)
T ss_pred CCCCCceeehhhhhhhhcchHHHHHHHhcc
Confidence 334567899999999999999999999874
No 111
>COG1773 Rubredoxin [Energy production and conversion]
Probab=72.79 E-value=2 Score=24.88 Aligned_cols=8 Identities=38% Similarity=0.846 Sum_probs=5.1
Q ss_pred cccCCCCc
Q psy2103 83 HHCDICDV 90 (203)
Q Consensus 83 ~~C~~C~~ 90 (203)
+.|+.|+.
T Consensus 37 w~CP~Cg~ 44 (55)
T COG1773 37 WVCPECGV 44 (55)
T ss_pred cCCCCCCC
Confidence 56676663
No 112
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=72.37 E-value=11 Score=29.99 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=23.7
Q ss_pred CcccccchhhHhHHHHHHHHHHHhhcc
Q psy2103 136 LEEWKCESSRLIFEAWAKLQKELLSQS 162 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 162 (203)
...|+|+.|...|-..-+.-.|...|-
T Consensus 386 s~rY~Ce~CK~~FC~dCdvfiHe~Lh~ 412 (421)
T COG5151 386 SGRYQCELCKSTFCSDCDVFIHETLHF 412 (421)
T ss_pred ccceechhhhhhhhhhhHHHHHHHHhh
Confidence 467999999999999999999988874
No 113
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=72.35 E-value=4.4 Score=19.47 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=14.6
Q ss_pred cccCCCCccCCChHHHHHHHH
Q psy2103 83 HHCDICDVGFSDKFALKRHRL 103 (203)
Q Consensus 83 ~~C~~C~~~f~~~~~L~~H~~ 103 (203)
..||+|++.+ ....+..|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 4688888887 5567777765
No 114
>KOG2593|consensus
Probab=71.50 E-value=3.5 Score=34.26 Aligned_cols=38 Identities=21% Similarity=0.493 Sum_probs=26.7
Q ss_pred cCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCc
Q psy2103 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDV 90 (203)
Q Consensus 45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~ 90 (203)
.....|.|+.|.+.|.....++- .-...-.|.|..|+-
T Consensus 124 t~~~~Y~Cp~C~kkyt~Lea~~L--------~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYTSLEALQL--------LDNETGEFHCENCGG 161 (436)
T ss_pred cccccccCCccccchhhhHHHHh--------hcccCceEEEecCCC
Confidence 44567999999999888777663 223345688888865
No 115
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=71.46 E-value=1.2 Score=28.28 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=11.5
Q ss_pred CcccccchhhHhHHH
Q psy2103 136 LEEWKCESSRLIFEA 150 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~ 150 (203)
...|.|..||..|.-
T Consensus 51 ~GIW~C~kCg~~fAG 65 (89)
T COG1997 51 TGIWKCRKCGAKFAG 65 (89)
T ss_pred cCeEEcCCCCCeecc
Confidence 367888888888853
No 116
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=70.93 E-value=3.3 Score=24.03 Aligned_cols=40 Identities=23% Similarity=0.545 Sum_probs=18.7
Q ss_pred Cceeccc--ccccccChhhHHHHHHHhcCCCCeeCcc----hhhhcc
Q psy2103 20 RPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSI----CGSAFN 60 (203)
Q Consensus 20 ~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~----C~~~f~ 60 (203)
.+..|+. |...+. ...|..|+...=...+..|+. |+..+.
T Consensus 8 ~~v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~ 53 (60)
T PF02176_consen 8 RPVPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVP 53 (60)
T ss_dssp SEEE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEE
T ss_pred CEeeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccc
Confidence 4456666 434344 345666666444444566666 655443
No 117
>KOG2186|consensus
Probab=70.90 E-value=3.3 Score=31.91 Aligned_cols=47 Identities=19% Similarity=0.561 Sum_probs=36.7
Q ss_pred eeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHHHH
Q psy2103 50 YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLI 104 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~ 104 (203)
|.|..||....-.. +.+|+. +.+ ...|.|--|+..|.. ..+..|..-
T Consensus 4 FtCnvCgEsvKKp~-vekH~s----rCr--n~~fSCIDC~k~F~~-~sYknH~kC 50 (276)
T KOG2186|consen 4 FTCNVCGESVKKPQ-VEKHMS----RCR--NAYFSCIDCGKTFER-VSYKNHTKC 50 (276)
T ss_pred Eehhhhhhhccccc-hHHHHH----hcc--CCeeEEeeccccccc-chhhhhhhh
Confidence 78999998876655 667986 333 377999999999998 777888654
No 118
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=70.78 E-value=4 Score=29.98 Aligned_cols=33 Identities=21% Similarity=0.571 Sum_probs=25.5
Q ss_pred CCCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhc
Q psy2103 18 GERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59 (203)
Q Consensus 18 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 59 (203)
...-|.|+.|+..|....++. ..|.|+.||...
T Consensus 114 ~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L 146 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEML 146 (178)
T ss_pred CCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCC
Confidence 344599999999999887753 269999999654
No 119
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=70.49 E-value=0.7 Score=33.02 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=9.9
Q ss_pred eeCcchhhhccChhHHH
Q psy2103 50 YRCSICGSAFNQATHLK 66 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~ 66 (203)
+.|+.||++|.+...+.
T Consensus 29 ~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 29 RECLACGKRFTTFERVE 45 (154)
T ss_pred eeccccCCcceEeEecc
Confidence 56666666665554433
No 120
>KOG4377|consensus
Probab=70.07 E-value=2.2 Score=35.18 Aligned_cols=138 Identities=15% Similarity=0.216 Sum_probs=68.9
Q ss_pred eecc--cccccccChhhHHHHHHHhcCC------------CCeeCcc--hhhhccChhHHHhhhhcCCccccCCCC--Cc
Q psy2103 22 YQCE--VCEKTFARHSTLWNHRRIHTGE------------KPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEK--PH 83 (203)
Q Consensus 22 ~~C~--~C~~~f~~~~~L~~H~~~h~~~------------~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~--~~ 83 (203)
|.|. .|+..+-++..+.+|...|-.. ..|.|.. |.+ +-++...|-..|-...-.|-+ -|
T Consensus 272 yhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~k---sTsdV~~h~nFht~~~n~Gfrrthf 348 (480)
T KOG4377|consen 272 YHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTHF 348 (480)
T ss_pred hcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCc---ccccccccCccccccccCceeccee
Confidence 6665 4888888899999998887432 1256754 876 555666676532111111111 26
Q ss_pred ccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCCCCC-CCCCCCCCCCccccc--chhhHhHHHHHHHHHHHhh
Q psy2103 84 HCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTTPPQ-STPTHSSSQLEEWKC--ESSRLIFEAWAKLQKELLS 160 (203)
Q Consensus 84 ~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~ 160 (203)
.|-.|+-.+..+ ...|...|-....-.. ............ -..-.-+....-|.| ..|+..|.+.+.+..|.+.
T Consensus 349 hC~r~gCTdtfK--~~khk~yh~kdda~~~-dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm~shkrk 425 (480)
T KOG4377|consen 349 HCQRIGCTDTFK--DSKHKPYHYKDDAGEI-DGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQMASHKRK 425 (480)
T ss_pred EEeccCCccccc--cccccccccCcchhhh-hhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhhhhhhhhh
Confidence 676655333333 3344433321111000 000000000000 000011111233566 5699999999999999988
Q ss_pred ccCCC
Q psy2103 161 QSGYP 165 (203)
Q Consensus 161 h~~~~ 165 (203)
|....
T Consensus 426 heRqe 430 (480)
T KOG4377|consen 426 HERQE 430 (480)
T ss_pred hhhhh
Confidence 85443
No 121
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=68.67 E-value=2.8 Score=29.02 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.1
Q ss_pred eecccccccccChhhHHHHHHHhcCC
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHTGE 47 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~~~ 47 (203)
..|-++|+.|++ |.+|+.+|.+-
T Consensus 77 IicLEDGkkfKS---LKRHL~t~~gm 99 (148)
T COG4957 77 IICLEDGKKFKS---LKRHLTTHYGL 99 (148)
T ss_pred EEEeccCcchHH---HHHHHhcccCC
Confidence 679999999986 99999998874
No 122
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=67.11 E-value=2.1 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=22.1
Q ss_pred CcccccchhhHhHHHHHHHHHHHhhccCCCccc-ccccccc
Q psy2103 136 LEEWKCESSRLIFEAWAKLQKELLSQSGYPYHK-LQSWRLS 175 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~~~~~~~ 175 (203)
.....|=+||+.|.. |.+|++.|+|..+.+ -.-|+++
T Consensus 70 ~d~i~clecGk~~k~---LkrHL~~~~gltp~eYR~kwGlp 107 (132)
T PF05443_consen 70 PDYIICLECGKKFKT---LKRHLRTHHGLTPEEYRAKWGLP 107 (132)
T ss_dssp SS-EE-TBT--EESB---HHHHHHHTT-S-HHHHHHHTT-G
T ss_pred cCeeEEccCCcccch---HHHHHHHccCCCHHHHHHHhCcC
Confidence 356789999999976 599999999987665 3334444
No 123
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=66.95 E-value=0.6 Score=35.24 Aligned_cols=33 Identities=12% Similarity=0.371 Sum_probs=25.2
Q ss_pred CcccccchhhHhHHHHHHHHHHHhhccCCCccc
Q psy2103 136 LEEWKCESSRLIFEAWAKLQKELLSQSGYPYHK 168 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~ 168 (203)
...|.|..|++.|....-...|+...|.+...+
T Consensus 75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~ve~ 107 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKGPEFVRKHIFNKHPEKVEE 107 (214)
T ss_dssp SEEEEE-SSS-EESSHHHHHHHHHHH-HHHHHH
T ss_pred CCEECCCCCCcccCChHHHHHHHhhcCHHHHHH
Confidence 467999999999999999999999877655444
No 124
>PF15269 zf-C2H2_7: Zinc-finger
Probab=66.04 E-value=4.4 Score=22.26 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=18.8
Q ss_pred eecccccccccChhhHHHHHHH
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRI 43 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~ 43 (203)
|+|-.|..+..-++.|-.||+.
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 7888899888888999988874
No 125
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=65.73 E-value=3 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.625 Sum_probs=18.0
Q ss_pred CeeCcchhhh-ccChhHHHhhhhcCCccccCCCCCcccCCCCc
Q psy2103 49 PYRCSICGSA-FNQATHLKNHAKVGKCKVHTGEKPHHCDICDV 90 (203)
Q Consensus 49 ~~~C~~C~~~-f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~ 90 (203)
.|.|+.||.. ..+-.. --....+|.|+.||.
T Consensus 25 ~F~CPnCG~~~I~RC~~-----------CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 25 KFLCPNCGEVIIYRCEK-----------CRKQSNPYTCPKCGF 56 (59)
T ss_pred EeeCCCCCCeeEeechh-----------HHhcCCceECCCCCC
Confidence 4778888765 222211 112246688888885
No 126
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=64.57 E-value=3.3 Score=20.78 Aligned_cols=24 Identities=21% Similarity=0.724 Sum_probs=9.6
Q ss_pred ecccccccccChhhHHHHHHHhcCCCCeeCcchhh
Q psy2103 23 QCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGS 57 (203)
Q Consensus 23 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~ 57 (203)
+|+.|+..+.. .+...|.|+.|+.
T Consensus 4 ~Cp~C~se~~y-----------~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-----------EDGELLVCPECGH 27 (30)
T ss_dssp --TTT-----E-----------E-SSSEEETTTTE
T ss_pred CCCCCCCccee-----------ccCCEEeCCcccc
Confidence 56777766555 2333577777764
No 127
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.15 E-value=4.6 Score=19.48 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=6.2
Q ss_pred cccCCCCccCC
Q psy2103 83 HHCDICDVGFS 93 (203)
Q Consensus 83 ~~C~~C~~~f~ 93 (203)
-.|+.||+.|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 34666666553
No 128
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=60.86 E-value=7.7 Score=19.73 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=6.8
Q ss_pred CcccCCCCccC
Q psy2103 82 PHHCDICDVGF 92 (203)
Q Consensus 82 ~~~C~~C~~~f 92 (203)
+..|+.||...
T Consensus 17 ~irC~~CG~RI 27 (32)
T PF03604_consen 17 PIRCPECGHRI 27 (32)
T ss_dssp TSSBSSSS-SE
T ss_pred cEECCcCCCeE
Confidence 46788887643
No 129
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=59.50 E-value=1.7 Score=33.55 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=48.2
Q ss_pred cCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCCC
Q psy2103 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTTP 124 (203)
Q Consensus 45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~ 124 (203)
+|.+.|.|..|.. |.-..+--.|+.. =+-.....|+|..|++.=. .+-|+--.-......+...
T Consensus 138 hGGrif~CsfC~~-flCEDDQFEHQAs---CQvLe~E~~KC~SCNrlGq-~sCLRCK~cfCddHvrrKg----------- 201 (314)
T PF06524_consen 138 HGGRIFKCSFCDN-FLCEDDQFEHQAS---CQVLESETFKCQSCNRLGQ-YSCLRCKICFCDDHVRRKG----------- 201 (314)
T ss_pred CCCeEEEeecCCC-eeeccchhhhhhh---hhhhhcccccccccccccc-hhhhheeeeehhhhhhhcc-----------
Confidence 5556688888864 5555555566542 0122344577777765422 2222211000000000000
Q ss_pred CCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhhc
Q psy2103 125 PQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 125 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
.......+++|+.||.....-..|..-.|+|
T Consensus 202 ------~ky~k~k~~PCPKCg~et~eTkdLSmStR~h 232 (314)
T PF06524_consen 202 ------FKYEKGKPIPCPKCGYETQETKDLSMSTRSH 232 (314)
T ss_pred ------cccccCCCCCCCCCCCcccccccceeeeecc
Confidence 0111236788999999888777777666665
No 130
>KOG2071|consensus
Probab=58.37 E-value=14 Score=32.23 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=12.4
Q ss_pred CcccccchhhHhHHH
Q psy2103 136 LEEWKCESSRLIFEA 150 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~ 150 (203)
.....|.+|+..|..
T Consensus 511 e~~~~C~IC~EkFe~ 525 (579)
T KOG2071|consen 511 ERQASCPICQEKFEV 525 (579)
T ss_pred ccccCCcccccccce
Confidence 467889999999964
No 131
>PF14353 CpXC: CpXC protein
Probab=58.02 E-value=1.2 Score=30.65 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=13.6
Q ss_pred CeeCcchhhhccChhHHHhhh
Q psy2103 49 PYRCSICGSAFNQATHLKNHA 69 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~l~~H~ 69 (203)
.+.|+.||..|.-...+..|-
T Consensus 38 ~~~CP~Cg~~~~~~~p~lY~D 58 (128)
T PF14353_consen 38 SFTCPSCGHKFRLEYPLLYHD 58 (128)
T ss_pred EEECCCCCCceecCCCEEEEc
Confidence 477777777776655555543
No 132
>PTZ00448 hypothetical protein; Provisional
Probab=57.97 E-value=3.4 Score=33.69 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=30.9
Q ss_pred cccccchhhHhHHHHHHHHHHHhhccCCCccccccccccc
Q psy2103 137 EEWKCESSRLIFEAWAKLQKELLSQSGYPYHKLQSWRLSS 176 (203)
Q Consensus 137 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~~~~~~~ 176 (203)
..|.|..|+..|.+....+.|+++......-+....+.++
T Consensus 313 ~~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gLpp 352 (373)
T PTZ00448 313 NMLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEP 352 (373)
T ss_pred CCccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCCCC
Confidence 4689999999999999999999997666555544444443
No 133
>KOG4124|consensus
Probab=57.17 E-value=2.2 Score=34.39 Aligned_cols=56 Identities=36% Similarity=0.841 Sum_probs=43.2
Q ss_pred CCCeeCcc--hhhhccChhHHHhhhhcCCc----------cccC----CCCCcccCCCCccCCChHHHHHHH
Q psy2103 47 EKPYRCSI--CGSAFNQATHLKNHAKVGKC----------KVHT----GEKPHHCDICDVGFSDKFALKRHR 102 (203)
Q Consensus 47 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~----------~~~~----~~~~~~C~~C~~~f~~~~~L~~H~ 102 (203)
.++|.|.+ |++.++....|..|....|+ +-|. ..++|+|++|.+.++....|.-|+
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~ 418 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHR 418 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCcee
Confidence 35688977 99999999999999887664 1222 247899999999999877765553
No 134
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=56.70 E-value=1.6 Score=28.01 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=9.4
Q ss_pred cccccchhhHhHH
Q psy2103 137 EEWKCESSRLIFE 149 (203)
Q Consensus 137 ~~~~C~~C~~~f~ 149 (203)
..|.|..|++.|.
T Consensus 52 GIW~C~~C~~~~A 64 (90)
T PF01780_consen 52 GIWKCKKCGKKFA 64 (90)
T ss_dssp TEEEETTTTEEEE
T ss_pred EEeecCCCCCEEe
Confidence 5677877877774
No 135
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=54.93 E-value=6.1 Score=27.56 Aligned_cols=14 Identities=21% Similarity=0.736 Sum_probs=9.6
Q ss_pred CeeCcchhhhccCh
Q psy2103 49 PYRCSICGSAFNQA 62 (203)
Q Consensus 49 ~~~C~~C~~~f~~~ 62 (203)
.+.|..||..|...
T Consensus 70 ~~~C~~CG~~~~~~ 83 (135)
T PRK03824 70 VLKCRNCGNEWSLK 83 (135)
T ss_pred EEECCCCCCEEecc
Confidence 47788888776554
No 136
>KOG1842|consensus
Probab=54.69 E-value=14 Score=31.02 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=27.1
Q ss_pred CCCCCcccccchhhHhHHHHHHHHHHHhhccCC
Q psy2103 132 SSSQLEEWKCESSRLIFEAWAKLQKELLSQSGY 164 (203)
Q Consensus 132 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~ 164 (203)
++.....|-|++|.+.|.+...|.-|....|.+
T Consensus 9 s~~i~egflCPiC~~dl~~~~~L~~H~d~eH~~ 41 (505)
T KOG1842|consen 9 SGEILEGFLCPICLLDLPNLSALNDHLDVEHFE 41 (505)
T ss_pred cchhhhcccCchHhhhhhhHHHHHHHHhhhccc
Confidence 444456799999999999999999999775544
No 137
>KOG3408|consensus
Probab=54.55 E-value=7.3 Score=26.46 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=23.3
Q ss_pred cCCCCCcccCCCCccCCChHHHHHHHHHh
Q psy2103 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105 (203)
Q Consensus 77 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~ 105 (203)
-+|...|.|-.|.+-|.+...|..|.++.
T Consensus 52 lPG~GqfyCi~CaRyFi~~~~l~~H~ktK 80 (129)
T KOG3408|consen 52 LPGGGQFYCIECARYFIDAKALKTHFKTK 80 (129)
T ss_pred CCCCceeehhhhhhhhcchHHHHHHHhcc
Confidence 34556689999999999999999997654
No 138
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=54.11 E-value=10 Score=26.81 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=27.6
Q ss_pred eeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHH
Q psy2103 50 YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHR 102 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~ 102 (203)
-.|..|+.....-..-..--..........+.-+.|+.|++.|-.-+.+.+..
T Consensus 92 sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW~GsH~~~~~ 144 (147)
T PF01927_consen 92 SRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYWEGSHWRRME 144 (147)
T ss_pred CccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEecccccHHHHH
Confidence 57999987553332111000000000122234579999999998776655543
No 139
>PHA00626 hypothetical protein
Probab=53.70 E-value=8.2 Score=22.36 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=13.5
Q ss_pred CCCcccCCCCccCCChH
Q psy2103 80 EKPHHCDICDVGFSDKF 96 (203)
Q Consensus 80 ~~~~~C~~C~~~f~~~~ 96 (203)
...|+|+.|++.|+...
T Consensus 21 snrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 21 SDDYVCCDCGYNDSKDA 37 (59)
T ss_pred CcceEcCCCCCeechhh
Confidence 45699999999988654
No 140
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=52.23 E-value=3.3 Score=26.65 Aligned_cols=14 Identities=14% Similarity=0.648 Sum_probs=10.6
Q ss_pred cccccchhhHhHHH
Q psy2103 137 EEWKCESSRLIFEA 150 (203)
Q Consensus 137 ~~~~C~~C~~~f~~ 150 (203)
..|.|..|++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PTZ00255 53 GIWRCKGCKKTVAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 67888888888753
No 141
>KOG2593|consensus
Probab=51.61 E-value=15 Score=30.73 Aligned_cols=37 Identities=22% Similarity=0.582 Sum_probs=26.2
Q ss_pred CCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhh
Q psy2103 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSA 58 (203)
Q Consensus 19 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~ 58 (203)
..-|.|+.|.++|.+...++. .--....|.|..|+--
T Consensus 126 ~~~Y~Cp~C~kkyt~Lea~~L---~~~~~~~F~C~~C~ge 162 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLEALQL---LDNETGEFHCENCGGE 162 (436)
T ss_pred cccccCCccccchhhhHHHHh---hcccCceEEEecCCCc
Confidence 345999999999998766552 2232346999999843
No 142
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=51.50 E-value=2.9 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=10.6
Q ss_pred cccccchhhHhHHH
Q psy2103 137 EEWKCESSRLIFEA 150 (203)
Q Consensus 137 ~~~~C~~C~~~f~~ 150 (203)
..|.|..|++.|.-
T Consensus 52 GIW~C~~C~~~~AG 65 (91)
T TIGR00280 52 GIWTCRKCGAKFAG 65 (91)
T ss_pred EEEEcCCCCCEEeC
Confidence 67888888888753
No 143
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=50.83 E-value=7 Score=22.56 Aligned_cols=26 Identities=31% Similarity=0.806 Sum_probs=17.5
Q ss_pred eecccccccccChhhHHHHHHHhcCCCCeeCcchhhhc
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 59 (203)
..|..|+..|+.... ...|+.|+..+
T Consensus 6 ~~C~~Cg~~~~~~dD------------iVvCp~Cgapy 31 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDD------------IVVCPECGAPY 31 (54)
T ss_pred ccChhhCCcccCCCC------------EEECCCCCCcc
Confidence 368888888865443 35788887654
No 144
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=50.28 E-value=15 Score=20.25 Aligned_cols=8 Identities=50% Similarity=1.377 Sum_probs=3.8
Q ss_pred eeCcchhh
Q psy2103 50 YRCSICGS 57 (203)
Q Consensus 50 ~~C~~C~~ 57 (203)
+.|+.|+.
T Consensus 19 ~~CP~Cg~ 26 (46)
T PF12760_consen 19 FVCPHCGS 26 (46)
T ss_pred CCCCCCCC
Confidence 44555543
No 145
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.11 E-value=4.3 Score=30.86 Aligned_cols=41 Identities=29% Similarity=0.616 Sum_probs=25.5
Q ss_pred CCCceecccccccccChhhHHHHHHHhcCC----------CC-----eeCcchhhh
Q psy2103 18 GERPYQCEVCEKTFARHSTLWNHRRIHTGE----------KP-----YRCSICGSA 58 (203)
Q Consensus 18 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~----------~~-----~~C~~C~~~ 58 (203)
.++.+.|++|+-.|.....+..-.|+-.++ .| ..|+.|.+.
T Consensus 16 ~kk~ieCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~fY~VvvCP~C~yA 71 (267)
T COG1655 16 YKKTIECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYFYDVVVCPICYYA 71 (267)
T ss_pred hhceeccCcccchhhhhheeccceeEecccccceeeccccCCceeEEEEcchhhHH
Confidence 345578999998888766544444444332 11 468888743
No 146
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=49.30 E-value=10 Score=24.40 Aligned_cols=14 Identities=43% Similarity=1.089 Sum_probs=10.2
Q ss_pred CCeeCcchhhhccC
Q psy2103 48 KPYRCSICGSAFNQ 61 (203)
Q Consensus 48 ~~~~C~~C~~~f~~ 61 (203)
.|-.|..||+.|..
T Consensus 57 ~Pa~CkkCGfef~~ 70 (97)
T COG3357 57 RPARCKKCGFEFRD 70 (97)
T ss_pred cChhhcccCccccc
Confidence 45678888888754
No 147
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=48.73 E-value=9.9 Score=19.89 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=14.6
Q ss_pred ecccccccccChhhHHHHHHHhcCCCCeeCcchhhhc
Q psy2103 23 QCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59 (203)
Q Consensus 23 ~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 59 (203)
.|+.||..|..... .....-.|..||..+
T Consensus 3 ~C~~Cg~~Yh~~~~--------pP~~~~~Cd~cg~~L 31 (36)
T PF05191_consen 3 ICPKCGRIYHIEFN--------PPKVEGVCDNCGGEL 31 (36)
T ss_dssp EETTTTEEEETTTB----------SSTTBCTTTTEBE
T ss_pred CcCCCCCccccccC--------CCCCCCccCCCCCee
Confidence 46667766654332 222234566666543
No 148
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=48.15 E-value=18 Score=19.49 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=17.4
Q ss_pred eecccccccccCh--hhHHHHHHHhc
Q psy2103 22 YQCEVCEKTFARH--STLWNHRRIHT 45 (203)
Q Consensus 22 ~~C~~C~~~f~~~--~~L~~H~~~h~ 45 (203)
..|+.||..|... ..-..|.+.|.
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 5899999888744 66666776653
No 149
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=47.79 E-value=4.9 Score=24.75 Aligned_cols=9 Identities=22% Similarity=0.966 Sum_probs=4.1
Q ss_pred ecccccccc
Q psy2103 23 QCEVCEKTF 31 (203)
Q Consensus 23 ~C~~C~~~f 31 (203)
.|+.|+..-
T Consensus 3 ~CP~Cg~~a 11 (72)
T PRK09678 3 HCPLCQHAA 11 (72)
T ss_pred cCCCCCCcc
Confidence 345554433
No 150
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=47.19 E-value=11 Score=21.33 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=5.7
Q ss_pred CcccCCCCcc
Q psy2103 82 PHHCDICDVG 91 (203)
Q Consensus 82 ~~~C~~C~~~ 91 (203)
.+.|..|+..
T Consensus 37 r~~C~~Cgyt 46 (50)
T PRK00432 37 RWHCGKCGYT 46 (50)
T ss_pred cEECCCcCCE
Confidence 4566666654
No 151
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=46.95 E-value=5.4 Score=19.65 Aligned_cols=19 Identities=26% Similarity=0.726 Sum_probs=9.6
Q ss_pred eeCcchhhhccChhHHHhhh
Q psy2103 50 YRCSICGSAFNQATHLKNHA 69 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~ 69 (203)
|.|..|+..| .......|.
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEE-EGGGTTT--
T ss_pred CeeecCCCCc-CcCCcCCCC
Confidence 4566777777 333444443
No 152
>PF09963 DUF2197: Uncharacterized protein conserved in bacteria (DUF2197); InterPro: IPR019241 This family represents various hypothetical bacterial proteins with no known function.
Probab=46.56 E-value=19 Score=20.97 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=23.4
Q ss_pred eecccccccccChhh-HHHHHHHhcCCCCeeCcchhhhccCh
Q psy2103 22 YQCEVCEKTFARHST-LWNHRRIHTGEKPYRCSICGSAFNQA 62 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~-L~~H~~~h~~~~~~~C~~C~~~f~~~ 62 (203)
..|-+|++.+.-... +..-.-....-..|.|..|.......
T Consensus 3 vkC~lCdk~~~Id~~~~~aKrLrnrPi~tYmC~eC~~RI~~~ 44 (56)
T PF09963_consen 3 VKCILCDKKEEIDEDTPEAKRLRNRPIHTYMCDECKERIREE 44 (56)
T ss_pred eEEEecCCEEEeccCCHHHHHhhcCCCcceeChhHHHHHhHH
Confidence 468888888775532 22222222344468888887654433
No 153
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=46.11 E-value=9.5 Score=18.03 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=6.0
Q ss_pred CCcccCCCCc
Q psy2103 81 KPHHCDICDV 90 (203)
Q Consensus 81 ~~~~C~~C~~ 90 (203)
..|.|+.||+
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 4566666663
No 154
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=45.71 E-value=9.6 Score=26.34 Aligned_cols=14 Identities=36% Similarity=0.869 Sum_probs=7.6
Q ss_pred ceecccccccccCh
Q psy2103 21 PYQCEVCEKTFARH 34 (203)
Q Consensus 21 ~~~C~~C~~~f~~~ 34 (203)
|++|..||..|.+-
T Consensus 1 PH~Ct~Cg~~f~dg 14 (131)
T PF09845_consen 1 PHQCTKCGRVFEDG 14 (131)
T ss_pred CcccCcCCCCcCCC
Confidence 34555666666543
No 155
>KOG0696|consensus
Probab=45.14 E-value=8.2 Score=32.47 Aligned_cols=58 Identities=28% Similarity=0.550 Sum_probs=43.4
Q ss_pred CceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCc
Q psy2103 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDV 90 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~ 90 (203)
.-|+|++|. +..|.+-|.=. .|.|+-=++++.+-..-..|.- +.|+...|-.|..||.
T Consensus 72 QGfQCqvC~--------fvvHkrChefV-tF~CPGadkg~dtDdpr~kHkf----~~~tYssPTFCDhCGs 129 (683)
T KOG0696|consen 72 QGFQCQVCC--------FVVHKRCHEFV-TFSCPGADKGPDTDDPRSKHKF----KIHTYSSPTFCDHCGS 129 (683)
T ss_pred CceeeeEEe--------ehhhhhhcceE-EEECCCCCCCCCCCCcccccce----eeeecCCCchhhhHHH
Confidence 347888885 66788877644 5889988888888887777765 5777777777777764
No 156
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=44.84 E-value=4.1 Score=26.22 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=10.1
Q ss_pred cccccchhhHhHHH
Q psy2103 137 EEWKCESSRLIFEA 150 (203)
Q Consensus 137 ~~~~C~~C~~~f~~ 150 (203)
..|.|..|++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PRK03976 53 GIWECRKCGAKFAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 66788888877753
No 157
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.42 E-value=15 Score=24.48 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=19.0
Q ss_pred eCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCC
Q psy2103 51 RCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFS 93 (203)
Q Consensus 51 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~ 93 (203)
.|+.|++.|. -....|..|+.||+.|.
T Consensus 11 idPetg~KFY----------------DLNrdPiVsPytG~s~P 37 (129)
T COG4530 11 IDPETGKKFY----------------DLNRDPIVSPYTGKSYP 37 (129)
T ss_pred cCccccchhh----------------ccCCCccccCcccccch
Confidence 5777877762 22345788999999994
No 158
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=42.54 E-value=10 Score=34.22 Aligned_cols=46 Identities=26% Similarity=0.504 Sum_probs=27.2
Q ss_pred eecccccccccCh---hhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCcc
Q psy2103 22 YQCEVCEKTFARH---STLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVG 91 (203)
Q Consensus 22 ~~C~~C~~~f~~~---~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~ 91 (203)
..|..||..+.-. ..|.-| ...+...|..||+ ....+..|+.||..
T Consensus 436 l~C~~Cg~v~~Cp~Cd~~lt~H----~~~~~L~CH~Cg~--------------------~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYIAECPNCDSPLTLH----KATGQLRCHYCGY--------------------QEPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCcccCCCCCcceEEe----cCCCeeEeCCCCC--------------------CCCCCCCCCCCCCC
Confidence 4577787766533 223333 3334566666653 24567889999875
No 159
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=42.08 E-value=41 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=23.3
Q ss_pred CCcccccchhhHhHHHHHHHHHHHhhc
Q psy2103 135 QLEEWKCESSRLIFEAWAKLQKELLSQ 161 (203)
Q Consensus 135 ~~~~~~C~~C~~~f~~~~~l~~H~~~h 161 (203)
..+.+.|-.|.+-|.+...|..|.+..
T Consensus 52 GlGqhYCieCaryf~t~~aL~~Hkkgk 78 (126)
T COG5112 52 GLGQHYCIECARYFITEKALMEHKKGK 78 (126)
T ss_pred CCceeeeehhHHHHHHHHHHHHHhccc
Confidence 346788999999999999999998763
No 160
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=41.51 E-value=13 Score=18.30 Aligned_cols=10 Identities=50% Similarity=0.939 Sum_probs=3.9
Q ss_pred CeeCcchhhh
Q psy2103 49 PYRCSICGSA 58 (203)
Q Consensus 49 ~~~C~~C~~~ 58 (203)
.|.|..|+..
T Consensus 15 ~Y~C~~Cdf~ 24 (30)
T PF07649_consen 15 FYRCSECDFD 24 (30)
T ss_dssp EEE-TTT---
T ss_pred eEECccCCCc
Confidence 4667666643
No 161
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=41.21 E-value=13 Score=21.05 Aligned_cols=12 Identities=25% Similarity=0.755 Sum_probs=6.5
Q ss_pred ceeccccccccc
Q psy2103 21 PYQCEVCEKTFA 32 (203)
Q Consensus 21 ~~~C~~C~~~f~ 32 (203)
.+.|..||..|.
T Consensus 4 ~l~C~dCg~~Fv 15 (49)
T PF13451_consen 4 TLTCKDCGAEFV 15 (49)
T ss_pred eEEcccCCCeEE
Confidence 455555555554
No 162
>KOG1842|consensus
Probab=40.94 E-value=14 Score=31.04 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=11.0
Q ss_pred eeCcchhhhccChhHHHhhhh
Q psy2103 50 YRCSICGSAFNQATHLKNHAK 70 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~ 70 (203)
|.|++|...|.+...|..|..
T Consensus 16 flCPiC~~dl~~~~~L~~H~d 36 (505)
T KOG1842|consen 16 FLCPICLLDLPNLSALNDHLD 36 (505)
T ss_pred ccCchHhhhhhhHHHHHHHHh
Confidence 455555555555555555554
No 163
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=40.18 E-value=14 Score=26.27 Aligned_cols=33 Identities=33% Similarity=0.788 Sum_probs=18.2
Q ss_pred CeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCcc
Q psy2103 49 PYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVG 91 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~ 91 (203)
+|.|. |+..|.+..- |= ..-.|+ .|.|..|+-.
T Consensus 117 ~Y~C~-C~q~~l~~RR---hn-----~~~~g~-~YrC~~C~gk 149 (156)
T COG3091 117 PYRCQ-CQQHYLRIRR---HN-----TVRRGE-VYRCGKCGGK 149 (156)
T ss_pred eEEee-cCCccchhhh---cc-----cccccc-eEEeccCCce
Confidence 57777 7776654432 11 122344 6777777653
No 164
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=40.18 E-value=14 Score=24.95 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=7.8
Q ss_pred eecccccccccCh
Q psy2103 22 YQCEVCEKTFARH 34 (203)
Q Consensus 22 ~~C~~C~~~f~~~ 34 (203)
+.|..|+..|...
T Consensus 71 ~~C~~Cg~~~~~~ 83 (115)
T TIGR00100 71 CECEDCSEEVSPE 83 (115)
T ss_pred EEcccCCCEEecC
Confidence 5566666665543
No 165
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=39.90 E-value=16 Score=21.12 Aligned_cols=30 Identities=23% Similarity=0.624 Sum_probs=15.9
Q ss_pred eecccccccccChhhHHHHHHHhcCCCCeeCcchhhhc
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 59 (203)
|.|+.|+..+.-.... .++ ...|+.||..+
T Consensus 3 ~~CP~CG~~iev~~~~-------~Ge-iV~Cp~CGael 32 (54)
T TIGR01206 3 FECPDCGAEIELENPE-------LGE-LVICDECGAEL 32 (54)
T ss_pred cCCCCCCCEEecCCCc-------cCC-EEeCCCCCCEE
Confidence 5677777665433221 122 35677776544
No 166
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=39.27 E-value=16 Score=19.43 Aligned_cols=15 Identities=20% Similarity=0.707 Sum_probs=11.3
Q ss_pred ceecccccccccChh
Q psy2103 21 PYQCEVCEKTFARHS 35 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~ 35 (203)
||.|..|+..|-...
T Consensus 12 ~f~C~~C~~~FC~~H 26 (39)
T smart00154 12 GFKCRHCGNLFCGEH 26 (39)
T ss_pred CeECCccCCcccccc
Confidence 688888888887543
No 167
>KOG1280|consensus
Probab=39.12 E-value=30 Score=28.10 Aligned_cols=26 Identities=12% Similarity=0.177 Sum_probs=15.7
Q ss_pred ceecccccccccChhhHHHHHHHhcC
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIHTG 46 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h~~ 46 (203)
.|.|++|+..=.+...|..|....|.
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~Hp 104 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQHP 104 (381)
T ss_pred cccCCcccccccchhHHHHHhhhcCc
Confidence 46666666666666666666554443
No 168
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=38.78 E-value=16 Score=30.56 Aligned_cols=14 Identities=29% Similarity=0.880 Sum_probs=7.6
Q ss_pred CeeCcchhhhccCh
Q psy2103 49 PYRCSICGSAFNQA 62 (203)
Q Consensus 49 ~~~C~~C~~~f~~~ 62 (203)
.|+|+.|++.+...
T Consensus 367 g~rC~kCg~~~~~~ 380 (421)
T COG1571 367 GFRCKKCGTRARET 380 (421)
T ss_pred CcccccccccCCcc
Confidence 45566666555443
No 169
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=38.53 E-value=20 Score=21.01 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=4.9
Q ss_pred CCCCcccCCCC
Q psy2103 79 GEKPHHCDICD 89 (203)
Q Consensus 79 ~~~~~~C~~C~ 89 (203)
|+..-.|+.|.
T Consensus 41 GE~VArCPSCS 51 (67)
T COG5216 41 GEVVARCPSCS 51 (67)
T ss_pred CceEEEcCCce
Confidence 34444444443
No 170
>KOG1280|consensus
Probab=38.32 E-value=53 Score=26.79 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=42.3
Q ss_pred CCCCcccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHH
Q psy2103 79 GEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKEL 158 (203)
Q Consensus 79 ~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~ 158 (203)
...-|.|+.|+..=.+...|..|....|............. ..++.|+.|.+.-......+.|.
T Consensus 76 ~~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~----------------~~~~~qp~~~~~~~~~~~~~~~~ 139 (381)
T KOG1280|consen 76 DPQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA----------------ANPEMQPIHSKETENLSVHWTEI 139 (381)
T ss_pred ccccccCCcccccccchhHHHHHhhhcCcccCcceeeeccc----------------cCcccCchhhhhhhhhhhhhhhh
Confidence 34468999999988888899999776655433221111111 24556777887777766666665
Q ss_pred hh
Q psy2103 159 LS 160 (203)
Q Consensus 159 ~~ 160 (203)
..
T Consensus 140 a~ 141 (381)
T KOG1280|consen 140 AL 141 (381)
T ss_pred cc
Confidence 54
No 171
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=38.28 E-value=15 Score=24.69 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=7.4
Q ss_pred eecccccccccC
Q psy2103 22 YQCEVCEKTFAR 33 (203)
Q Consensus 22 ~~C~~C~~~f~~ 33 (203)
+.|..|+..|..
T Consensus 71 ~~C~~Cg~~~~~ 82 (113)
T PRK12380 71 AWCWDCSQVVEI 82 (113)
T ss_pred EEcccCCCEEec
Confidence 566666665554
No 172
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=38.16 E-value=12 Score=25.88 Aligned_cols=56 Identities=27% Similarity=0.612 Sum_probs=31.9
Q ss_pred CCCceecccccccccChhhHHHHHHHhcCCCCeeC---cchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCC
Q psy2103 18 GERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC---SICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSD 94 (203)
Q Consensus 18 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C---~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~ 94 (203)
+.+.|+|++|..+......|. |-.| .+|+-- -..|..|-. .--+||.|.-+|++
T Consensus 77 d~~lYeCnIC~etS~ee~FLK----------PneCCgY~iCn~C---ya~LWK~~~----------~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 77 DPKLYECNICKETSAEERFLK----------PNECCGYSICNAC---YANLWKFCN----------LYPVCPVCKTSFKS 133 (140)
T ss_pred CCCceeccCcccccchhhcCC----------cccccchHHHHHH---HHHHHHHcc----------cCCCCCcccccccc
Confidence 457799999987766544432 2222 113221 334554432 22479999988887
Q ss_pred hH
Q psy2103 95 KF 96 (203)
Q Consensus 95 ~~ 96 (203)
..
T Consensus 134 s~ 135 (140)
T PF05290_consen 134 SS 135 (140)
T ss_pred cc
Confidence 64
No 173
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=38.11 E-value=13 Score=20.13 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=6.2
Q ss_pred CeeCcchhhhc
Q psy2103 49 PYRCSICGSAF 59 (203)
Q Consensus 49 ~~~C~~C~~~f 59 (203)
.+.|..||...
T Consensus 19 ~~vC~~CG~Vl 29 (43)
T PF08271_consen 19 ELVCPNCGLVL 29 (43)
T ss_dssp EEEETTT-BBE
T ss_pred eEECCCCCCEe
Confidence 46777776553
No 174
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=38.11 E-value=26 Score=29.83 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=24.0
Q ss_pred CCCcccCCCCccCCChHHHHHHHHHhhhh
Q psy2103 80 EKPHHCDICDVGFSDKFALKRHRLIHEKY 108 (203)
Q Consensus 80 ~~~~~C~~C~~~f~~~~~L~~H~~~~~~~ 108 (203)
-+-+.|+.|.+.|.....+..|+...|..
T Consensus 55 WrFWiCp~CskkF~d~~~~~~H~~~eH~~ 83 (466)
T PF04780_consen 55 WRFWICPRCSKKFSDAESCLSHMEQEHPA 83 (466)
T ss_pred eeEeeCCcccceeCCHHHHHHHHHHhhhh
Confidence 34579999999999999999998876643
No 175
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=37.85 E-value=11 Score=25.30 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=8.4
Q ss_pred eecccccccccChh
Q psy2103 22 YQCEVCEKTFARHS 35 (203)
Q Consensus 22 ~~C~~C~~~f~~~~ 35 (203)
+.|..|+..|....
T Consensus 71 ~~C~~Cg~~~~~~~ 84 (113)
T PF01155_consen 71 ARCRDCGHEFEPDE 84 (113)
T ss_dssp EEETTTS-EEECHH
T ss_pred EECCCCCCEEecCC
Confidence 56777777776543
No 176
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=37.85 E-value=34 Score=25.11 Aligned_cols=13 Identities=23% Similarity=0.738 Sum_probs=6.1
Q ss_pred Cceeccccccccc
Q psy2103 20 RPYQCEVCEKTFA 32 (203)
Q Consensus 20 ~~~~C~~C~~~f~ 32 (203)
.-|.|+.|...|.
T Consensus 112 ~~y~C~~~~~r~s 124 (176)
T COG1675 112 NYYVCPNCHVKYS 124 (176)
T ss_pred CceeCCCCCCccc
Confidence 3355555544444
No 177
>KOG2636|consensus
Probab=37.47 E-value=13 Score=31.28 Aligned_cols=23 Identities=13% Similarity=0.446 Sum_probs=20.1
Q ss_pred cccccchhh-HhHHHHHHHHHHHh
Q psy2103 137 EEWKCESSR-LIFEAWAKLQKELL 159 (203)
Q Consensus 137 ~~~~C~~C~-~~f~~~~~l~~H~~ 159 (203)
..|.|.+|| +++.....+.+|..
T Consensus 400 ~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 400 IEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred cccceeeccCccccCcHHHHHHhH
Confidence 468999999 99999999999963
No 178
>KOG0717|consensus
Probab=37.16 E-value=21 Score=30.21 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.2
Q ss_pred eecccccccccChhhHHHHHHH
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRI 43 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~ 43 (203)
+.|.+|+++|++...|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 7799999999999999998643
No 179
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=36.76 E-value=27 Score=29.95 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=13.5
Q ss_pred CCCCcccCCCCccCCCh
Q psy2103 79 GEKPHHCDICDVGFSDK 95 (203)
Q Consensus 79 ~~~~~~C~~C~~~f~~~ 95 (203)
....|+|..|++.|...
T Consensus 422 ~~~~~~c~~c~~~yd~~ 438 (479)
T PRK05452 422 LGPRMQCSVCQWIYDPA 438 (479)
T ss_pred CCCeEEECCCCeEECCC
Confidence 44569999999998754
No 180
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=36.75 E-value=15 Score=31.31 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=23.9
Q ss_pred cccccchhhHhHHHHHHHHHHHhh-ccCC
Q psy2103 137 EEWKCESSRLIFEAWAKLQKELLS-QSGY 164 (203)
Q Consensus 137 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~ 164 (203)
..|.|+.|.+.|.+...+..|+.. |.+.
T Consensus 56 rFWiCp~CskkF~d~~~~~~H~~~eH~~~ 84 (466)
T PF04780_consen 56 RFWICPRCSKKFSDAESCLSHMEQEHPAG 84 (466)
T ss_pred eEeeCCcccceeCCHHHHHHHHHHhhhhh
Confidence 468899999999999999999986 5443
No 181
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=36.74 E-value=7.3 Score=25.52 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=20.5
Q ss_pred CCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCC
Q psy2103 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSD 94 (203)
Q Consensus 48 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~ 94 (203)
+.|.|+.|+..-.....+. .....-...|..||..|..
T Consensus 21 k~FtCp~Cghe~vs~ctvk---------k~~~~g~~~Cg~CGls~e~ 58 (104)
T COG4888 21 KTFTCPRCGHEKVSSCTVK---------KTVNIGTAVCGNCGLSFEC 58 (104)
T ss_pred ceEecCccCCeeeeEEEEE---------ecCceeEEEcccCcceEEE
Confidence 4577777775444333211 2223334678888877653
No 182
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=35.26 E-value=25 Score=19.56 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=5.5
Q ss_pred CcccCCCCccC
Q psy2103 82 PHHCDICDVGF 92 (203)
Q Consensus 82 ~~~C~~C~~~f 92 (203)
.+.|+.|++.+
T Consensus 20 ~~vC~~Cg~~~ 30 (52)
T smart00661 20 RFVCRKCGYEE 30 (52)
T ss_pred EEECCcCCCeE
Confidence 35555555443
No 183
>KOG2636|consensus
Probab=35.18 E-value=29 Score=29.25 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=24.0
Q ss_pred ccCCCCCcccCCCC-ccCCChHHHHHHHH
Q psy2103 76 VHTGEKPHHCDICD-VGFSDKFALKRHRL 103 (203)
Q Consensus 76 ~~~~~~~~~C~~C~-~~f~~~~~L~~H~~ 103 (203)
.|.-+..|.|.+|| +.|..+..+.+|..
T Consensus 395 LHGL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 395 LHGLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred hcCCCcccceeeccCccccCcHHHHHHhH
Confidence 45556779999999 99999999999964
No 184
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=34.45 E-value=17 Score=19.37 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=8.2
Q ss_pred eeCcchhhhccChhHHH
Q psy2103 50 YRCSICGSAFNQATHLK 66 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~ 66 (203)
..|+.|+-.|-....|.
T Consensus 20 d~C~~C~G~W~d~~el~ 36 (41)
T PF13453_consen 20 DVCPSCGGIWFDAGELE 36 (41)
T ss_pred EECCCCCeEEccHHHHH
Confidence 44555555544444443
No 185
>KOG2807|consensus
Probab=33.85 E-value=66 Score=26.07 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=42.2
Q ss_pred CCCcccCCCCccCCChHHHHHHHHHhhhhh--cCccccCCCCCCCCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHH
Q psy2103 80 EKPHHCDICDVGFSDKFALKRHRLIHEKYA--RNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKE 157 (203)
Q Consensus 80 ~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H 157 (203)
+.|..|+.|+...-....|.+= .||-.+ .-...+...... ..---.-.........|+|+.|-..|-.--+.-.|
T Consensus 288 sLP~eCpiC~ltLVss~hLARS--yhhL~PL~~F~Eip~~~~~~-~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iH 364 (378)
T KOG2807|consen 288 SLPIECPICSLTLVSSPHLARS--YHHLFPLKPFVEIPETEYNG-SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIH 364 (378)
T ss_pred cCCccCCccceeEecchHHHHH--HHhhcCCcchhhccccccCC-CcceeeeccccCCCCcEEchhccceeeccchHHHH
Confidence 4678999999888777666442 232111 000000000000 00000000111223679999999999888888888
Q ss_pred Hhhcc
Q psy2103 158 LLSQS 162 (203)
Q Consensus 158 ~~~h~ 162 (203)
...|.
T Consensus 365 esLh~ 369 (378)
T KOG2807|consen 365 ESLHN 369 (378)
T ss_pred hhhhc
Confidence 88773
No 186
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=33.76 E-value=9.9 Score=33.90 Aligned_cols=58 Identities=22% Similarity=0.472 Sum_probs=36.2
Q ss_pred ecccccccccChhhHHHHHHHhcCCCC-eeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccC
Q psy2103 23 QCEVCEKTFARHSTLWNHRRIHTGEKP-YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGF 92 (203)
Q Consensus 23 ~C~~C~~~f~~~~~L~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f 92 (203)
.|.-||-+|+....|---+ .++.-.. -.|+.|.+.|....+-+-|. .+..|+.||=..
T Consensus 125 ~CT~CGPRfTIi~alPYDR-~nTsM~~F~lC~~C~~EY~dP~nRRfHA-----------Qp~aCp~CGP~~ 183 (750)
T COG0068 125 NCTNCGPRFTIIEALPYDR-ENTSMADFPLCPFCDKEYKDPLNRRFHA-----------QPIACPKCGPHL 183 (750)
T ss_pred ccCCCCcceeeeccCCCCc-ccCccccCcCCHHHHHHhcCcccccccc-----------ccccCcccCCCe
Confidence 4888888888665543221 1222112 24888988888887755554 357899998643
No 187
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=33.21 E-value=1.9e+02 Score=20.90 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=32.8
Q ss_pred CeeCcchhhhc---cChhHHHhhhhcCCccccCCCCCcccCC--CCccCCChHHHHHHHHHhhhhhcCc
Q psy2103 49 PYRCSICGSAF---NQATHLKNHAKVGKCKVHTGEKPHHCDI--CDVGFSDKFALKRHRLIHEKYARNS 112 (203)
Q Consensus 49 ~~~C~~C~~~f---~~~~~l~~H~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~~~~~~~~ 112 (203)
...|+.|.-.- .--..-+. +...|.-.|.. |.+. .+-..|++|.+..|......
T Consensus 80 ~L~CPLCRG~V~GWtvve~AR~---------~LN~K~RsC~~e~C~F~-GtY~eLrKHar~~HP~~rP~ 138 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTVVEPARR---------FLNAKKRSCSQESCSFS-GTYSELRKHARSEHPSARPS 138 (162)
T ss_pred cccCccccCceeceEEchHHHH---------HhccCCccCcccccccc-cCHHHHHHHHHhhCCCCCCc
Confidence 37899987332 22223333 33456667766 6554 36678999999887655433
No 188
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=33.20 E-value=20 Score=21.40 Aligned_cols=28 Identities=25% Similarity=0.676 Sum_probs=10.5
Q ss_pred eecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccC
Q psy2103 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQ 61 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 61 (203)
-.|.+|++.|... .+.+.|..||..|-.
T Consensus 10 ~~C~~C~~~F~~~------------~rrhhCr~CG~~vC~ 37 (69)
T PF01363_consen 10 SNCMICGKKFSLF------------RRRHHCRNCGRVVCS 37 (69)
T ss_dssp SB-TTT--B-BSS------------S-EEE-TTT--EEEC
T ss_pred CcCcCcCCcCCCc------------eeeEccCCCCCEECC
Confidence 3577777777431 123457777665543
No 189
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.55 E-value=20 Score=24.31 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=7.2
Q ss_pred eecccccccccC
Q psy2103 22 YQCEVCEKTFAR 33 (203)
Q Consensus 22 ~~C~~C~~~f~~ 33 (203)
+.|..|+..|..
T Consensus 72 ~~C~~Cg~~~~~ 83 (117)
T PRK00564 72 LECKDCSHVFKP 83 (117)
T ss_pred EEhhhCCCcccc
Confidence 556666655554
No 190
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=31.96 E-value=37 Score=24.20 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=13.7
Q ss_pred CCCCCcccCCCCccC------CChHHHHHHHHH
Q psy2103 78 TGEKPHHCDICDVGF------SDKFALKRHRLI 104 (203)
Q Consensus 78 ~~~~~~~C~~C~~~f------~~~~~L~~H~~~ 104 (203)
...-..+|..|++-| ++.+.+..|+..
T Consensus 10 ~p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~ 42 (152)
T PF09416_consen 10 DPSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVR 42 (152)
T ss_dssp -CCCEEEETTTTEEEES--TTSSS-HHHHHHHH
T ss_pred CcccEeEcCCCCcEeecCCCCCcccHHHHHHHH
Confidence 334445666665544 355667777543
No 191
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.50 E-value=27 Score=20.85 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=6.4
Q ss_pred CcccCCCCccCC
Q psy2103 82 PHHCDICDVGFS 93 (203)
Q Consensus 82 ~~~C~~C~~~f~ 93 (203)
.|.|+.||..+.
T Consensus 46 ~~~C~~Cg~~~~ 57 (69)
T PF07282_consen 46 VFTCPNCGFEMD 57 (69)
T ss_pred eEEcCCCCCEEC
Confidence 355655655543
No 192
>PTZ00448 hypothetical protein; Provisional
Probab=31.25 E-value=31 Score=28.38 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.3
Q ss_pred ceecccccccccChhhHHHHHHHh
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRRIH 44 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~~h 44 (203)
.|.|..|+..|.+....+.|+++-
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSD 337 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSE 337 (373)
T ss_pred CccccccccccCCHHHHHHHhhhh
Confidence 588999999998888888898754
No 193
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=31.22 E-value=8.5 Score=20.60 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=5.5
Q ss_pred cccCCCCccC
Q psy2103 83 HHCDICDVGF 92 (203)
Q Consensus 83 ~~C~~C~~~f 92 (203)
|.|..|+..+
T Consensus 29 y~C~~C~~~w 38 (40)
T smart00440 29 YVCTKCGHRW 38 (40)
T ss_pred EEeCCCCCEe
Confidence 5565555544
No 194
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=31.21 E-value=30 Score=23.28 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=7.9
Q ss_pred CeeCcchhhhc
Q psy2103 49 PYRCSICGSAF 59 (203)
Q Consensus 49 ~~~C~~C~~~f 59 (203)
.+.|..|+..|
T Consensus 70 ~~~C~~Cg~~~ 80 (114)
T PRK03681 70 ECWCETCQQYV 80 (114)
T ss_pred EEEcccCCCee
Confidence 37788888654
No 195
>KOG4727|consensus
Probab=31.07 E-value=28 Score=25.23 Aligned_cols=24 Identities=4% Similarity=0.164 Sum_probs=21.3
Q ss_pred CcccccchhhHhHHHHHHHHHHHh
Q psy2103 136 LEEWKCESSRLIFEAWAKLQKELL 159 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~~~~l~~H~~ 159 (203)
..-|-|.+|+-+|....++.-|+.
T Consensus 73 ~~GyyCdVCdcvvKDSinflDHiN 96 (193)
T KOG4727|consen 73 KGGYYCDVCDCVVKDSINFLDHIN 96 (193)
T ss_pred cCceeeeecceeehhhHHHHHHhc
Confidence 466999999999999999999973
No 196
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=30.86 E-value=13 Score=24.70 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=11.8
Q ss_pred cccccchhhHhHHHH
Q psy2103 137 EEWKCESSRLIFEAW 151 (203)
Q Consensus 137 ~~~~C~~C~~~f~~~ 151 (203)
..|.|+.|+..+...
T Consensus 18 ~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 18 TQLICPSCLYEWNEN 32 (109)
T ss_pred CeeECcccccccccc
Confidence 678999999877544
No 197
>KOG0978|consensus
Probab=30.25 E-value=20 Score=32.10 Aligned_cols=19 Identities=21% Similarity=0.564 Sum_probs=13.2
Q ss_pred cccCCCCccCCChHHHHHH
Q psy2103 83 HHCDICDVGFSDKFALKRH 101 (203)
Q Consensus 83 ~~C~~C~~~f~~~~~L~~H 101 (203)
-+||.|+..|...+-+..|
T Consensus 679 RKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 679 RKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred CCCCCCCCCCCcccccccC
Confidence 5788888888866554443
No 198
>KOG4124|consensus
Probab=30.17 E-value=31 Score=28.09 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=35.4
Q ss_pred CCCeeCcc--hhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHH
Q psy2103 47 EKPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRH 101 (203)
Q Consensus 47 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H 101 (203)
|+++.|.. |......-.....|-...++..-...++|+|. |++.+.++..|+.|
T Consensus 176 E~~~S~~vp~~~~~~~~~Ns~~~~S~~~~~T~~t~~~p~k~~-~~~~~~T~~~l~~H 231 (442)
T KOG4124|consen 176 EYRVSVVVPAAAAAAAAANSSDMSSDEASSTAETTGTPKKMP-ESLVMDTSSPLSDH 231 (442)
T ss_pred cccccccCchhhhhhhccccccccccccccccccccCCccCc-ccccccccchhhhc
Confidence 45566655 66666555555555554444455566778885 78888888888877
No 199
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=29.69 E-value=27 Score=18.80 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=9.2
Q ss_pred Cceecccccccc
Q psy2103 20 RPYQCEVCEKTF 31 (203)
Q Consensus 20 ~~~~C~~C~~~f 31 (203)
.+..|++|+..|
T Consensus 28 ~~~~CpYCg~~y 39 (40)
T PF10276_consen 28 GPVVCPYCGTRY 39 (40)
T ss_dssp CEEEETTTTEEE
T ss_pred CeEECCCCCCEE
Confidence 357888888876
No 200
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=29.67 E-value=21 Score=19.27 Aligned_cols=15 Identities=33% Similarity=0.977 Sum_probs=8.4
Q ss_pred CceecccccccccCh
Q psy2103 20 RPYQCEVCEKTFARH 34 (203)
Q Consensus 20 ~~~~C~~C~~~f~~~ 34 (203)
.||.|..|+..|-..
T Consensus 12 ~~~~C~~C~~~FC~~ 26 (43)
T PF01428_consen 12 LPFKCKHCGKSFCLK 26 (43)
T ss_dssp SHEE-TTTS-EE-TT
T ss_pred CCeECCCCCcccCcc
Confidence 467788887777654
No 201
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.17 E-value=22 Score=30.77 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=6.6
Q ss_pred CCcccCCCCc
Q psy2103 81 KPHHCDICDV 90 (203)
Q Consensus 81 ~~~~C~~C~~ 90 (203)
.+..|+.|+.
T Consensus 252 ~~~~Cp~C~s 261 (505)
T TIGR00595 252 IPKTCPQCGS 261 (505)
T ss_pred CCCCCCCCCC
Confidence 3467777765
No 202
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=28.98 E-value=24 Score=18.77 Aligned_cols=15 Identities=27% Similarity=0.705 Sum_probs=7.5
Q ss_pred cCCCCCcccCCCCcc
Q psy2103 77 HTGEKPHHCDICDVG 91 (203)
Q Consensus 77 ~~~~~~~~C~~C~~~ 91 (203)
..+.+.+.|+.|+..
T Consensus 19 ~~~~~~w~C~~C~~~ 33 (40)
T PF04810_consen 19 DDGGKTWICNFCGTK 33 (40)
T ss_dssp ETTTTEEEETTT--E
T ss_pred cCCCCEEECcCCCCc
Confidence 334455677777653
No 203
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=28.39 E-value=44 Score=27.31 Aligned_cols=25 Identities=12% Similarity=0.091 Sum_probs=22.4
Q ss_pred CcccccchhhHhHHHHHHHHHHHhh
Q psy2103 136 LEEWKCESSRLIFEAWAKLQKELLS 160 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~~~~l~~H~~~ 160 (203)
...+-|+.|++.|...+.+..|+..
T Consensus 236 ~~~~YC~~C~r~f~~~~VFe~Hl~g 260 (470)
T COG5188 236 FPKVYCVKCGREFSRSKVFEYHLEG 260 (470)
T ss_pred ccceeeHhhhhHhhhhHHHHHHHhh
Confidence 4678899999999999999999865
No 204
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=28.15 E-value=36 Score=22.41 Aligned_cols=13 Identities=38% Similarity=0.917 Sum_probs=7.0
Q ss_pred ceecccccccccC
Q psy2103 21 PYQCEVCEKTFAR 33 (203)
Q Consensus 21 ~~~C~~C~~~f~~ 33 (203)
|+.|..||..|.+
T Consensus 2 pH~CtrCG~vf~~ 14 (112)
T COG3364 2 PHQCTRCGEVFDD 14 (112)
T ss_pred Cceeccccccccc
Confidence 3455555555555
No 205
>KOG2907|consensus
Probab=28.08 E-value=28 Score=23.37 Aligned_cols=38 Identities=21% Similarity=0.486 Sum_probs=21.6
Q ss_pred eeCcchhhhccChhHHHhhhhcCCccccC-CC-CCcccCCCCccCCC
Q psy2103 50 YRCSICGSAFNQATHLKNHAKVGKCKVHT-GE-KPHHCDICDVGFSD 94 (203)
Q Consensus 50 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~-~~-~~~~C~~C~~~f~~ 94 (203)
.+|+.||..= +..|-.+- |+.. |+ .-|.|+.|++.|+.
T Consensus 75 ~kCpkCghe~-----m~Y~T~Ql--RSADEGQTVFYTC~kC~~k~~e 114 (116)
T KOG2907|consen 75 HKCPKCGHEE-----MSYHTLQL--RSADEGQTVFYTCPKCKYKFTE 114 (116)
T ss_pred ccCcccCCch-----hhhhhhhc--ccccCCceEEEEcCccceeeec
Confidence 6799998543 33332210 2222 22 34899999998864
No 206
>PRK10220 hypothetical protein; Provisional
Probab=27.75 E-value=16 Score=24.36 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=11.6
Q ss_pred cccccchhhHhHHHH
Q psy2103 137 EEWKCESSRLIFEAW 151 (203)
Q Consensus 137 ~~~~C~~C~~~f~~~ 151 (203)
..|.|+.|+..+...
T Consensus 19 ~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 19 GMYICPECAHEWNDA 33 (111)
T ss_pred CeEECCcccCcCCcc
Confidence 678999999777544
No 207
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=27.52 E-value=16 Score=20.80 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=16.7
Q ss_pred CcccccchhhHhHHHHHHHHHHHhhcc
Q psy2103 136 LEEWKCESSRLIFEAWAKLQKELLSQS 162 (203)
Q Consensus 136 ~~~~~C~~C~~~f~~~~~l~~H~~~h~ 162 (203)
...|+|+.|...|=..-++-.|...|.
T Consensus 19 ~~~y~C~~C~~~FC~dCD~fiHE~LH~ 45 (51)
T PF07975_consen 19 SSRYRCPKCKNHFCIDCDVFIHETLHN 45 (51)
T ss_dssp -EEE--TTTT--B-HHHHHTTTTTS-S
T ss_pred CCeEECCCCCCccccCcChhhhccccC
Confidence 367999999999988888888887763
No 208
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.46 E-value=25 Score=20.00 Aligned_cols=12 Identities=17% Similarity=0.733 Sum_probs=6.8
Q ss_pred ecccccccccCh
Q psy2103 23 QCEVCEKTFARH 34 (203)
Q Consensus 23 ~C~~C~~~f~~~ 34 (203)
.|++|++.|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999999865
No 209
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.44 E-value=49 Score=17.99 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=14.3
Q ss_pred cccccchhhHhHHHHHHHH
Q psy2103 137 EEWKCESSRLIFEAWAKLQ 155 (203)
Q Consensus 137 ~~~~C~~C~~~f~~~~~l~ 155 (203)
+.-.|..||+.|.-.....
T Consensus 7 p~K~C~~C~rpf~WRKKW~ 25 (42)
T PF10013_consen 7 PSKICPVCGRPFTWRKKWA 25 (42)
T ss_pred CCCcCcccCCcchHHHHHH
Confidence 3456999999998766554
No 210
>KOG0994|consensus
Probab=27.41 E-value=69 Score=30.78 Aligned_cols=77 Identities=22% Similarity=0.501 Sum_probs=60.6
Q ss_pred HHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCChHHHHHHHHHhhhhhcCccccCCCCCC
Q psy2103 42 RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTVNQSHDSQ 121 (203)
Q Consensus 42 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~~~~~~~~~~~~~~~~~ 121 (203)
..+.|.....|.-|+=.+.....+.-|..++++.-+.|...++|..|.+.|....
T Consensus 1102 el~WGdP~~~C~aCdCd~rG~~tpQCdr~tG~C~C~~Gv~G~rCdqCaRgy~G~f------------------------- 1156 (1758)
T KOG0994|consen 1102 ELYWGDPNEKCRACDCDPRGIETPQCDRATGRCVCRPGVGGPRCDQCARGYSGQF------------------------- 1156 (1758)
T ss_pred HhhcCCCCCCceecCCCCCCCCCCCccccCCceeecCCCCCcchhhhhhhhcCCC-------------------------
Confidence 3456666678888888888888899999888888888988999999998887441
Q ss_pred CCCCCCCCCCCCCCCcccccchhhHhHHHHHHHHHHHhh
Q psy2103 122 TTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELLS 160 (203)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 160 (203)
=.|.-|+.-|..|....+-+..
T Consensus 1157 -----------------P~C~PCh~CF~~WD~il~~L~~ 1178 (1758)
T KOG0994|consen 1157 -----------------PVCVPCHECFQTWDAILQELAL 1178 (1758)
T ss_pred -----------------CCCcchHHHHHHHHHHHHHHHH
Confidence 1488899999988877766543
No 211
>KOG4727|consensus
Probab=27.15 E-value=37 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=18.3
Q ss_pred eecccccccccChhhHHHHHH
Q psy2103 22 YQCEVCEKTFARHSTLWNHRR 42 (203)
Q Consensus 22 ~~C~~C~~~f~~~~~L~~H~~ 42 (203)
|-|.+|+-+|+..-++..|+.
T Consensus 76 yyCdVCdcvvKDSinflDHiN 96 (193)
T KOG4727|consen 76 YYCDVCDCVVKDSINFLDHIN 96 (193)
T ss_pred eeeeecceeehhhHHHHHHhc
Confidence 889999999999888888863
No 212
>KOG0402|consensus
Probab=26.87 E-value=14 Score=23.31 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=10.4
Q ss_pred cccccchhhHhHH
Q psy2103 137 EEWKCESSRLIFE 149 (203)
Q Consensus 137 ~~~~C~~C~~~f~ 149 (203)
..|.|..|.++|.
T Consensus 53 GiW~C~~C~kv~a 65 (92)
T KOG0402|consen 53 GIWKCGSCKKVVA 65 (92)
T ss_pred eEEecCCccceec
Confidence 6788888888875
No 213
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.69 E-value=35 Score=22.58 Aligned_cols=7 Identities=43% Similarity=0.994 Sum_probs=3.7
Q ss_pred cccCCCC
Q psy2103 83 HHCDICD 89 (203)
Q Consensus 83 ~~C~~C~ 89 (203)
|.|..|+
T Consensus 32 y~C~~C~ 38 (102)
T PF11672_consen 32 YVCTPCD 38 (102)
T ss_pred EECCCCC
Confidence 5555554
No 214
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.06 E-value=33 Score=19.41 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=7.1
Q ss_pred ecccccccccC
Q psy2103 23 QCEVCEKTFAR 33 (203)
Q Consensus 23 ~C~~C~~~f~~ 33 (203)
.|..|++.|..
T Consensus 4 ~C~~C~~~F~~ 14 (57)
T cd00065 4 SCMGCGKPFTL 14 (57)
T ss_pred cCcccCccccC
Confidence 46667766664
No 215
>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Pirh2 is an eukaryotic ubiquitin protein ligase, which has been shown to promote p53 degradation in mammals. Pirh2 physically interacts with p53 and promotes ubiquitination of p53 independently of MDM2. Like MDM2, Pirh2 is thought to participate in an autoregulatory feedback loop that controls p53 function. Pirh2 proteins contain three distinct zinc fingers, the CHY-type, the CTCHY-type which is C-terminal to the CHY-type zinc finger and a RING finger. The CHY-type zinc finger has no currently known function []. As well as Pirh2, the CHY-type zinc finger is also found in the following proteins: Yeast helper of Tim protein 13. Hot13 may have a role in the assembly and recycling of the small Tims, a complex of the mitochondrial intermembrane space that participates in the TIM22 import pathway for assembly of the inner membrane [] Several plant hypothetical proteins that also contain haemerythrin cation binding domains Several protozoan hypothetical proteins that also contain a Myb domain The solution structure of this zinc finger has been solved and binds 3 zinc atoms as shown in the following schematic representation: ++---------+-----+ || | | CXHYxxxxxxxxxCCxxxxxCxxCHxxxxxHxxxxxxxxxxxCxxCxxxxxxxxxCxxC | | | | | | | | +-+-----------------+--+ +--+---------+--+ 'C': conserved cysteine involved in the binding of one zinc atom. 'H': conserved histidine involved in the binding of one zinc atom. More information about these proteins can be found at Protein of the Month: Zinc Fingers []; GO: 0008270 zinc ion binding; PDB: 2DKT_A 2K2C_A.
Probab=24.81 E-value=21 Score=21.80 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=26.8
Q ss_pred ceecccccccccCh---hhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccC
Q psy2103 21 PYQCEVCEKTFARH---STLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGF 92 (203)
Q Consensus 21 ~~~C~~C~~~f~~~---~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f 92 (203)
.+.|+-|++.|.=. ..+..|-..........|..|+..+.-... ..+ ..+.|+.|+..|
T Consensus 10 ~~~~~cC~~~y~C~~CHde~~~H~~~~~~~~~v~Cg~C~~~~~~~~~------------~c~-~~~~C~~C~~~~ 71 (71)
T PF05495_consen 10 AIRFPCCGKYYPCRFCHDELEDHPFDRWPVKRVICGKCRTEQPIDEY------------SCG-ADYFCPICGLYF 71 (71)
T ss_dssp EEEETTTTEEESSHHHHHHCSSS---TTT--EEEETTT--EEES-SB------------TT---SEEETTTTEEE
T ss_pred EEECCcccCeecHHHHHHHhccCccccccccCeECCCCCCccChhhh------------hcC-CCccCcCcCCCC
Confidence 35566666666543 222233333333345778888766544322 011 457888887543
No 216
>PRK14873 primosome assembly protein PriA; Provisional
Probab=24.67 E-value=41 Score=30.24 Aligned_cols=45 Identities=22% Similarity=0.464 Sum_probs=25.0
Q ss_pred eecccccccccCh---hhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCcc
Q psy2103 22 YQCEVCEKTFARH---STLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVG 91 (203)
Q Consensus 22 ~~C~~C~~~f~~~---~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~ 91 (203)
..|..||..+.-. ..|..| .......|.+||+. ..++.|+.|+..
T Consensus 384 l~C~~Cg~~~~C~~C~~~L~~h----~~~~~l~Ch~CG~~---------------------~~p~~Cp~Cgs~ 431 (665)
T PRK14873 384 LACARCRTPARCRHCTGPLGLP----SAGGTPRCRWCGRA---------------------APDWRCPRCGSD 431 (665)
T ss_pred eEhhhCcCeeECCCCCCceeEe----cCCCeeECCCCcCC---------------------CcCccCCCCcCC
Confidence 3577776654432 233333 33345677777631 135789999864
No 217
>PRK00420 hypothetical protein; Validated
Probab=24.06 E-value=49 Score=22.30 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=9.7
Q ss_pred CCcccCCCCccCCC
Q psy2103 81 KPHHCDICDVGFSD 94 (203)
Q Consensus 81 ~~~~C~~C~~~f~~ 94 (203)
....|+.|+..+.-
T Consensus 39 g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 39 GEVVCPVHGKVYIV 52 (112)
T ss_pred CceECCCCCCeeee
Confidence 34778888886553
No 218
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=23.84 E-value=22 Score=25.04 Aligned_cols=31 Identities=26% Similarity=0.673 Sum_probs=17.5
Q ss_pred CeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccC
Q psy2103 49 PYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGF 92 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f 92 (203)
.|.|..|+..+..... . ....|.|..|+..+
T Consensus 123 ~~~C~~C~~~~~r~~~-----------~--~~~~~~C~~C~~~l 153 (157)
T PF10263_consen 123 VYRCPSCGREYKRHRR-----------S--KRKRYRCGRCGGPL 153 (157)
T ss_pred EEEcCCCCCEeeeecc-----------c--chhhEECCCCCCEE
Confidence 4778778766532221 1 22337788777554
No 219
>KOG1994|consensus
Probab=23.76 E-value=39 Score=25.77 Aligned_cols=21 Identities=29% Similarity=0.744 Sum_probs=19.2
Q ss_pred CeeCcchhhhccChhHHHhhh
Q psy2103 49 PYRCSICGSAFNQATHLKNHA 69 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~l~~H~ 69 (203)
.|-|..||..|.+..+|..|-
T Consensus 239 h~YC~fCG~~y~~~edl~ehC 259 (268)
T KOG1994|consen 239 HYYCFFCGIKYKDEEDLYEHC 259 (268)
T ss_pred ceEEEEeccccCCHHHHHHhC
Confidence 489999999999999999885
No 220
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=22.05 E-value=40 Score=22.69 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=13.1
Q ss_pred CCcccCCCCccCCChHHHHHH
Q psy2103 81 KPHHCDICDVGFSDKFALKRH 101 (203)
Q Consensus 81 ~~~~C~~C~~~f~~~~~L~~H 101 (203)
..+.|+.||..|-.......-
T Consensus 30 ~~~~C~~CGe~~~~~e~~~~~ 50 (127)
T TIGR03830 30 PGWYCPACGEELLDPEESKRN 50 (127)
T ss_pred eeeECCCCCCEEEcHHHHHHH
Confidence 446777777777666554443
No 221
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=22.00 E-value=1e+02 Score=15.71 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=13.4
Q ss_pred ceecccccccccChhhHHHHHH
Q psy2103 21 PYQCEVCEKTFARHSTLWNHRR 42 (203)
Q Consensus 21 ~~~C~~C~~~f~~~~~L~~H~~ 42 (203)
-+.|+.|++.+.. ..+..|+.
T Consensus 4 ~~~C~nC~R~v~a-~RfA~HLe 24 (33)
T PF08209_consen 4 YVECPNCGRPVAA-SRFAPHLE 24 (33)
T ss_dssp EEE-TTTSSEEEG-GGHHHHHH
T ss_pred eEECCCCcCCcch-hhhHHHHH
Confidence 4778888887664 44666764
No 222
>PRK12496 hypothetical protein; Provisional
Probab=22.00 E-value=67 Score=23.19 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=8.4
Q ss_pred eeCcchhhhc
Q psy2103 50 YRCSICGSAF 59 (203)
Q Consensus 50 ~~C~~C~~~f 59 (203)
|.|.-|++.|
T Consensus 128 ~~C~gC~~~~ 137 (164)
T PRK12496 128 KVCKGCKKKY 137 (164)
T ss_pred EECCCCCccc
Confidence 7899998876
No 223
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=21.68 E-value=37 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.6
Q ss_pred cccccchhhhhhhhccchhhhhhhccc
Q psy2103 171 SWRLSSEYRLDALCSINTIKLCRKENQ 197 (203)
Q Consensus 171 ~~~~~~~~~~d~~~~~~~~~~c~k~~~ 197 (203)
-|.+++-...|....+.+|.-|+|+++
T Consensus 50 MWkLPMFg~tD~~~Vl~Ei~~CrkayP 76 (138)
T CHL00130 50 LWGLPLFDVKDPAAVMFEINECRKQKP 76 (138)
T ss_pred eeCCccCCCCCHHHHHHHHHHHHHHCC
Confidence 567777788899999999999999987
No 224
>PF04641 Rtf2: Rtf2 RING-finger
Probab=21.43 E-value=62 Score=25.26 Aligned_cols=52 Identities=25% Similarity=0.618 Sum_probs=28.6
Q ss_pred CCceecccccccccChhhHHHHHHHhcCCCCeeCcc-hhhhccChhHHHhhhhcCCccccCCCCCcccCCCCccCCCh
Q psy2103 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSI-CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDK 95 (203)
Q Consensus 19 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~-C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~~f~~~ 95 (203)
..+|.|++.+..|.... .|.+.. ||-+|..... .. . . ....|+.|+..|...
T Consensus 111 ~~~~~CPvt~~~~~~~~-------------~fv~l~~cG~V~s~~al-ke--------~-k--~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKH-------------KFVYLRPCGCVFSEKAL-KE--------L-K--KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCce-------------eEEEEcCCCCEeeHHHH-Hh--------h-c--ccccccccCCccccC
Confidence 44578888776663221 344443 6666654432 11 1 1 224588898888754
No 225
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=21.38 E-value=61 Score=18.80 Aligned_cols=45 Identities=18% Similarity=0.511 Sum_probs=22.3
Q ss_pred CCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCC
Q psy2103 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI 87 (203)
Q Consensus 19 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~ 87 (203)
...+.|++....|.. |++...|+-.|...+.+. .+ .......||.
T Consensus 9 ~~~~~CPiT~~~~~~---------------PV~s~~C~H~fek~aI~~-~i--------~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFED---------------PVKSKKCGHTFEKEAILQ-YI--------QRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SS---------------EEEESSS--EEEHHHHHH-HC--------TTTS-EE-SC
T ss_pred EeccCCCCcCChhhC---------------CcCcCCCCCeecHHHHHH-HH--------HhcCCCCCCC
Confidence 345677776655442 677778888887665443 33 1245577877
No 226
>KOG1813|consensus
Probab=21.26 E-value=1.3e+02 Score=24.07 Aligned_cols=60 Identities=28% Similarity=0.542 Sum_probs=33.0
Q ss_pred CCceecccccccccChhhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccCCCCc----cCCC
Q psy2103 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDV----GFSD 94 (203)
Q Consensus 19 ~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~~C~~----~f~~ 94 (203)
..||.|.+|.+.|.+.-. +.-..|.|..|. |..+. +.-.|.+|++ .|..
T Consensus 239 ~~Pf~c~icr~~f~~pVv--------t~c~h~fc~~ca--------~~~~q-----------k~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRPVV--------TKCGHYFCEVCA--------LKPYQ-----------KGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred cCCccccccccccccchh--------hcCCceeehhhh--------ccccc-----------cCCcceecccccccccch
Confidence 356888888888775421 112235566553 22221 2345666665 5566
Q ss_pred hHHHHHHHHHh
Q psy2103 95 KFALKRHRLIH 105 (203)
Q Consensus 95 ~~~L~~H~~~~ 105 (203)
...|..-|..+
T Consensus 292 akeL~~~L~~k 302 (313)
T KOG1813|consen 292 AKELLVSLKLK 302 (313)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
No 227
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=21.12 E-value=45 Score=17.47 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=6.3
Q ss_pred ceeccccccccc
Q psy2103 21 PYQCEVCEKTFA 32 (203)
Q Consensus 21 ~~~C~~C~~~f~ 32 (203)
.|+|..||....
T Consensus 6 ~YkC~~CGniVe 17 (36)
T PF06397_consen 6 FYKCEHCGNIVE 17 (36)
T ss_dssp EEE-TTT--EEE
T ss_pred EEEccCCCCEEE
Confidence 588888887653
No 228
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=20.88 E-value=53 Score=21.49 Aligned_cols=13 Identities=31% Similarity=0.940 Sum_probs=9.4
Q ss_pred Cceeccccccccc
Q psy2103 20 RPYQCEVCEKTFA 32 (203)
Q Consensus 20 ~~~~C~~C~~~f~ 32 (203)
+++.|..||..|+
T Consensus 78 ~~~rC~eCG~~fk 90 (97)
T cd00924 78 KPKRCPECGHVFK 90 (97)
T ss_pred CceeCCCCCcEEE
Confidence 5677777777765
No 229
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=20.83 E-value=84 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=27.7
Q ss_pred CeeCcchhhhccChhHHHhhhhcCCccccCCCCCcccC
Q psy2103 49 PYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD 86 (203)
Q Consensus 49 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~C~ 86 (203)
-|.|..|-+-|.+...|.+|+..=..+..+|...|..+
T Consensus 198 lyiCe~Cl~y~~~~~~~~~H~~~C~~~~PPG~eIYr~~ 235 (450)
T PLN00104 198 LYFCEFCLKFMKRKEQLQRHMKKCDLKHPPGDEIYRHP 235 (450)
T ss_pred EEEchhhhhhhcCHHHHHHHHhcCCCCCCCcCeEEEcC
Confidence 38899999999999999999864333445666667654
No 230
>KOG1994|consensus
Probab=20.71 E-value=49 Score=25.28 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=18.9
Q ss_pred CCcccCCCCccCCChHHHHHH
Q psy2103 81 KPHHCDICDVGFSDKFALKRH 101 (203)
Q Consensus 81 ~~~~C~~C~~~f~~~~~L~~H 101 (203)
.-|.|-+||..|.+...|..|
T Consensus 238 eh~YC~fCG~~y~~~edl~eh 258 (268)
T KOG1994|consen 238 EHYYCFFCGIKYKDEEDLYEH 258 (268)
T ss_pred cceEEEEeccccCCHHHHHHh
Confidence 458999999999999999887
No 231
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=20.25 E-value=56 Score=18.86 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=10.7
Q ss_pred cccCCCCccCCChHHHH
Q psy2103 83 HHCDICDVGFSDKFALK 99 (203)
Q Consensus 83 ~~C~~C~~~f~~~~~L~ 99 (203)
+.|-+||..|.....|.
T Consensus 28 ~YC~~Cg~~Y~d~~dL~ 44 (55)
T PF13821_consen 28 NYCFWCGTKYDDEEDLE 44 (55)
T ss_pred ceeeeeCCccCCHHHHH
Confidence 55666666666665554
No 232
>KOG0782|consensus
Probab=20.13 E-value=24 Score=30.83 Aligned_cols=51 Identities=24% Similarity=0.507 Sum_probs=32.0
Q ss_pred hhHHHHHHHhcCCCCeeCcchhhhccChhHHHhhhhcCCccccCC-CCCcccCCCCccCCChH
Q psy2103 35 STLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG-EKPHHCDICDVGFSDKF 96 (203)
Q Consensus 35 ~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~-~~~~~C~~C~~~f~~~~ 96 (203)
..|.+|-=.|.-...-+|..|+++|-.+-. .|.. -....|++|...|-.+.
T Consensus 239 ~~fvrHHWVHrrRqeGkC~~CgKgFQQKf~-----------FhsKEivAisCSWCKqayH~Kv 290 (1004)
T KOG0782|consen 239 SGFVRHHWVHRRRQEGKCNTCGKGFQQKFF-----------FHSKEIVAISCSWCKQAYHLKV 290 (1004)
T ss_pred ccchHHhHhhHhhhccccchhhhhhhhhee-----------eccccEEEEEehHHHHHhhcch
Confidence 356666444433334579999999855422 2222 23578999999988776
No 233
>PLN03239 histone acetyltransferase; Provisional
Probab=20.08 E-value=87 Score=25.70 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCeeCcchhhhccChhHHHhhhhc---CCccccCCCCCcccC
Q psy2103 48 KPYRCSICGSAFNQATHLKNHAKV---GKCKVHTGEKPHHCD 86 (203)
Q Consensus 48 ~~~~C~~C~~~f~~~~~l~~H~~~---~~~~~~~~~~~~~C~ 86 (203)
.-|.|..|-+-|.+...|.+|+.. -..+..+|...|..+
T Consensus 105 ~lYiCE~Clky~~~~~~l~~H~~~~~~c~~~~PPG~eIYR~~ 146 (351)
T PLN03239 105 VLYVCEFSFGFFARKSELLRFQAKELPKERRHPPGNEIYRCG 146 (351)
T ss_pred eEEEeccchhhhcCHHHHHHHHHhhccccCcCCCCCeEEEeC
Confidence 358888888888888888888752 122345566666554
Done!