RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2103
(203 letters)
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 124 bits (315), Expect = 3e-37
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFN 60
+ + HL+ H R H+GE+PYQC+ CE+ F+R L H+R HTG KP++C C F+
Sbjct: 18 YFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFS 77
Query: 61 QATHLKNHAKVGKCKVHTGEKPHHCDI--CDVGFSDKFALKRHRLIH 105
++ HLK H + HTGEKP C C F+ L RH +H
Sbjct: 78 RSDHLKTHT-----RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 98.4 bits (246), Expect = 6e-27
Identities = 38/97 (39%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 17 SGERPYQCE--VCEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFNQATHLKNHAKVG 72
S +RP+ C C K + + S L H R HTGEKPY+C C F+++ LK H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ--- 58
Query: 73 KCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH--EK 107
+ HTG KP C C FS LK H H EK
Sbjct: 59 --RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 127 bits (321), Expect = 3e-37
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
FS+S HL H+R H+GE+PY+C C K+F+ L H+R HTGEKPY+C CG +F+Q
Sbjct: 31 FSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR 90
Query: 63 THLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH--EK 107
+L+ H + HTGEKP+ C C FS L+ H+ H EK
Sbjct: 91 ANLRAHQ-----RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Score = 125 bits (317), Expect = 9e-37
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 7/107 (6%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
FSQ +L+ H+R H+GE+PY C C K+F++ + L H+R HTGEKPY+C CG +F++
Sbjct: 87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE 146
Query: 63 THLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH--EK 107
+L H + HTGEKP+ C C FS + AL H+ H +K
Sbjct: 147 DNLHTHQ-----RTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 124 bits (315), Expect = 2e-36
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 1 MLFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFN 60
+ S + GE+PY C C K+F+R L H+R HTGEKPY+C CG +F+
Sbjct: 1 ISEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 61 QATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH--EK 107
L H + HTGEKP+ C C FS + L+ H+ H EK
Sbjct: 61 DKKDLTRHQ-----RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK 104
Score = 110 bits (277), Expect = 1e-30
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
FSQ HL+ H+R H+GE+PY+C C K+F+R L H+R HTGEKPY+C CG +F++
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 63 THLKNHAKVGKCKVHTGEKP 82
L H + HTG+K
Sbjct: 175 DALNVHQ-----RTHTGKKT 189
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 120 bits (304), Expect = 9e-36
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 6 SPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHL 65
S ++ + C+ C + F + L H R HT E+PY C IC AF + HL
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 66 KNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
++H +H+ EKP C C GF L H+ +H
Sbjct: 62 RDHR-----YIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 115 bits (291), Expect = 8e-34
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
F++S +L HER H+ ERPY C++C K F R L +HR IH+ EKP++C CG F Q+
Sbjct: 27 FTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQS 86
Query: 63 THLKNHAKVGKCKVHTGEKPHHC 85
L H +H
Sbjct: 87 RTLAVHK-----TLHMQTSSPTA 104
Score = 86.3 bits (215), Expect = 2e-22
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
F + HL++H IHS E+P++C+ C K F + TL H+ +H +
Sbjct: 55 FRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 118 bits (298), Expect = 4e-35
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
FS+ LK H R H+G +PY+C+ C+ A S+L H RIH+ E+P++C IC A +
Sbjct: 18 FSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS 77
Query: 63 THLKNHAKVGKCKVHTGEKPHHC 85
+ L H + HTG+
Sbjct: 78 SQLTVHL-----RSHTGDSGPSS 95
Score = 112 bits (283), Expect = 9e-33
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCK 75
P++CEVC K F+R L H R HTG KPY+C C A ++ L H +
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-----R 57
Query: 76 VHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+H+ E+P C IC + L H H
Sbjct: 58 IHSDERPFKCQICPYASRNSSQLTVHLRSH 87
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 115 bits (290), Expect = 1e-33
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
F+ H +H G RPY C VC K F L H +IHTG KPY C+IC F
Sbjct: 19 FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR 78
Query: 63 THLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFAL 98
H V + K + + ++
Sbjct: 79 DSFHRH-------VTSCTKSYEAAKAEQNTTEASGP 107
Score = 108 bits (272), Expect = 5e-31
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 13 ERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVG 72
SG++ Y C+ C K+F S H +H G +PY C +CG F HL H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH---- 56
Query: 73 KCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
K+HTG KP+ C+IC F + + HR +
Sbjct: 57 -MKIHTGIKPYECNICAKRFMWRDSF--HRHVT 86
Score = 95.6 bits (239), Expect = 6e-26
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
F HL H +IH+G +PY+C +C K F + HR + + K Y + +A
Sbjct: 47 FKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEA 104
Query: 63 THLKN 67
+ +
Sbjct: 105 SGPSS 109
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 115 bits (291), Expect = 3e-33
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 3 FSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRC--SICGSA 58
F L H R H+GE+P++C E C K+++R L H R HTGEKPY C C A
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 59 FNQATHLKNHAKVGKCKVHTGEKPHHCDI--CDVGFSDKFALKRHRLIH 105
F+ A+ H + + H+ EKP+ C + C ++D +L++H
Sbjct: 109 FSNASDRAKH----QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 101 bits (253), Expect = 1e-27
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 3 FSQSPHLKNH---ERIHSGERPYQCEVCE-----KTFARHSTLWNHRRIHTGEKPYRCSI 54
F L +H E IH + + C + F L H R HTGEKP++C+
Sbjct: 13 FDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTF 72
Query: 55 --CGSAFNQATHLKNHAKVGKCKVHTGEKPHHC--DICDVGFSDKFALKRH 101
C ++++ +LK H + HTGEKP+ C + C FS+ +H
Sbjct: 73 EGCRKSYSRLENLKTHL-----RSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 84.2 bits (209), Expect = 4e-21
Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 15/97 (15%)
Query: 19 ERPYQCEVCEKTFARHSTLWNH---RRIHTGEKPYRCSICGS-----AFNQATHLKNHAK 70
E + + C + F L +H IH K + C G F L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM- 59
Query: 71 VGKCKVHTGEKPHHCDI--CDVGFSDKFALKRHRLIH 105
+ HTGEKPH C C +S LK H H
Sbjct: 60 ----RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 58.0 bits (141), Expect = 3e-11
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 3 FSQSPHLKNH-ERIHSGERPYQCEV--CEKTFARHSTLWNHRRIHTG 46
FS + H R HS E+PY C++ C K + S+L H + G
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 114 bits (288), Expect = 3e-33
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRR---IHTGEKPYRCSICGSAF 59
F +LK H R H+GE+P++C C K + R L H ++ E+ + CS+C F
Sbjct: 17 FLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF 76
Query: 60 NQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRL-IH 105
+ L+ H HTGE P+ C C F K L+ H + +H
Sbjct: 77 RRRMELRLHM-----VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 106 bits (268), Expect = 3e-30
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCK 75
SG +C C K F L H R HTGEKP+ C CG + + +L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN--C 59
Query: 76 VHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
++ E+ C +C F + L+ H + H
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 102 bits (258), Expect = 1e-28
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 3 FSQSPHLKNHER---IHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59
+ + +L HE ++ E+ + C VC++TF R L H HTGE PY+CS C F
Sbjct: 45 YFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104
Query: 60 NQATHLKNHAKVGKCKVHTGEK 81
Q L++H K+H+G
Sbjct: 105 MQKKDLQSH----MIKLHSGPS 122
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 114 bits (287), Expect = 4e-33
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFN 60
F + ++ H H G R + C C K F S L H+ +HTGEKP++C+ CG F+
Sbjct: 17 FRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75
Query: 61 QATHLKNHAKVGKCKVHTGEKPHHCDI--CDVGFSDKFALKRHRLIH 105
+L+ H ++HTG++P+ C C+ F+ LK H L H
Sbjct: 76 LDFNLRTHV-----RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 103 bits (260), Expect = 6e-29
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSA 58
F +S LK H+ +H+GE+P+QC C K F+ L H RIHTG++PY C C
Sbjct: 44 FVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKK 103
Query: 59 FNQATHLKNHAKVGKCKVHTGEKPH 83
F Q+T+LK+H H K +
Sbjct: 104 FAQSTNLKSH-----ILTHAKAKNN 123
Score = 86.8 bits (216), Expect = 2e-22
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 19 ERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
R C + C K F +S + H H G + + C+ CG AF +++ LK H V
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ-----LV 56
Query: 77 HTGEKPHHCDICDVG--FSDKFALKRHRLIH 105
HTGEKP C G FS F L+ H IH
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 39.4 bits (93), Expect = 1e-04
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 3 FSQSPHLKNHERIHSGERPYQ 23
F+QS +LK+H H+ + Q
Sbjct: 104 FAQSTNLKSHILTHAKAKNNQ 124
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 111 bits (280), Expect = 2e-32
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
FSQS L H RIH+G++P+QC +C + F+R L H R HTGEKP+ C ICG F ++
Sbjct: 16 FSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 75
Query: 63 THLKNHAKVGKCKVHTGEK 81
K H K+H +K
Sbjct: 76 DERKRHT-----KIHLRQK 89
Score = 101 bits (255), Expect = 1e-28
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 19 ERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKV 76
ERPY C V C++ F++ +L H RIHTG+KP++C IC F+++ HL H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-----RT 56
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
HTGEKP CDIC F+ KRH IH
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIH 85
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 108 bits (273), Expect = 2e-31
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 6 SPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHL 65
H +H + ++PY+C+ C+ +F L +H+ +HTGEKPYRC+ICG+ FN+ +L
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 66 KNHAKVGKCKVHTGEKPH 83
K H ++H+GEKP+
Sbjct: 62 KTHT-----RIHSGEKPY 74
Score = 83.3 bits (207), Expect = 1e-21
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 35 STLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSD 94
+H + +KPY+C C ++F +L +H V HTGEKP+ C+IC F+
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-----HTGEKPYRCNICGAQFNR 57
Query: 95 KFALKRHRLIH 105
LK H IH
Sbjct: 58 PANLKTHTRIH 68
Score = 81.3 bits (202), Expect = 8e-21
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
F +L +H+ +H+GE+PY+C +C F R + L H RIH+GEKPY
Sbjct: 27 FRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 108 bits (272), Expect = 2e-31
Identities = 34/79 (43%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 5 QSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATH 64
S E R Y+C+ C K+F+ S L HRR HTGEKPY+C CG AF Q +H
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 65 LKNHAKVGKCKVHTGEKPH 83
L H +VHTG P
Sbjct: 62 LIGHH-----RVHTGSGPS 75
Score = 80.2 bits (199), Expect = 2e-20
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
FS S L H R H+GE+PY+C+ C K F + S L H R+HTG P
Sbjct: 28 FSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 79.4 bits (197), Expect = 4e-20
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 32 ARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVG 91
+ + Y+C CG +F+ ++ L H + HTGEKP+ CD C
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR-----RTHTGEKPYKCDECGKA 55
Query: 92 FSDKFALKRHRLIH 105
F + L H +H
Sbjct: 56 FIQRSHLIGHHRVH 69
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 108 bits (273), Expect = 3e-31
Identities = 33/81 (40%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGE--KPYRCSICGSAFN 60
F HL H+ HSGE+PY C VC F R + H R H G KPY C CG F+
Sbjct: 17 FRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76
Query: 61 QATHLKNHAKVGKCKVHTGEK 81
+ HL H K +VH+G
Sbjct: 77 RPDHLNGHIK----QVHSGPS 93
Score = 99.5 bits (249), Expect = 1e-27
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCK 75
SG CE+C K F L H+ H+GEKPY C +CG F + + H +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-----R 56
Query: 76 VHTGE--KPHHCDICDVGFSDKFALKRH-RLIH 105
H G KP+ C C GFS L H + +H
Sbjct: 57 SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 107 bits (270), Expect = 6e-31
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
FS+S HL H R H+GE+P+ C++C + FAR HR I P ++
Sbjct: 13 FSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKN 71
Query: 63 THLKNHAKVGKCKVHTGEK 81
HL+N V + K GE+
Sbjct: 72 YHLENE--VARLKKLVGER 88
Score = 94.5 bits (236), Expect = 7e-26
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
+P+QC +C + F+R L H R HTGEKP+ C ICG F ++ K H +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-----DIQH- 55
Query: 80 EKPHHCDICDVGFSDKFALKRHR 102
P D + S + L+
Sbjct: 56 ILPILEDKVEELLSKNYHLENEV 78
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 109 bits (274), Expect = 3e-30
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE--VCEKTFARHSTLWNHRRIHTGEKPYRCS--ICGSA 58
++++ L+ H H+GE+P+ C+ CEK F L H HTGEK + C C
Sbjct: 24 YNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLR 83
Query: 59 FNQATHLKNHAKVGKCKVHTGEK--PHHCDI--CDVGFSDKFALKRHRLIH 105
F ++K H K + C C F LK H+ H
Sbjct: 84 FTTKANMKKHF-----NRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 107 bits (269), Expect = 1e-29
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 11 NHERIHSGERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCS--ICGSAFNQATHLK 66
+ + + Y C C + ++ L H HTGEKP+ C C F HL
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 67 NHAKVGKCKVHTGEKPHHCD--ICDVGFSDKFALKRHRLIH 105
H+ HTGEK CD CD+ F+ K +K+H
Sbjct: 62 RHS-----LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 101 bits (254), Expect = 2e-27
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 3 FSQSPHLKNHERIHSGER--PYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCS--ICG 56
F+ ++K H + Y C C K F +H+ L H+ HT + PY C C
Sbjct: 84 FTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD 143
Query: 57 SAFNQATHLKNHAKVGKCKVHTG---EKPHHCDICDVGFSDKFALKRHRLIHE 106
F+ + LK H KVH G +K C ++ LK H+
Sbjct: 144 KRFSLPSRLKRHE-----KVHAGYPCKKDDSCSFVGKTWTLY--LKHVAECHQ 189
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 104 bits (262), Expect = 7e-30
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 8 HLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGE--KPYRCSICGSAFNQATHL 65
+ R HSGE+PY+C +C F + T+ H E + C C + + + L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 66 KNHAKVGKCKVHTGEKPH 83
H + K H+ P
Sbjct: 62 GVHLR----KQHSYSGPS 75
Score = 79.5 bits (197), Expect = 3e-20
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 36 TLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE--KPHHCDICDVGFS 93
+ + R H+GEKPY C IC + F Q+ +K H E HC CD +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQ-----KHTENVAKFHCPHCDTVIA 56
Query: 94 DKFALKRH-RLIH 105
K L H R H
Sbjct: 57 RKSDLGVHLRKQH 69
Score = 73.3 bits (181), Expect = 8e-18
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 3 FSQSPHLKNHERIHSGE--RPYQCEVCEKTFARHSTLWNH-RRIHTGEKPY 50
F+QS +K H E + C C+ AR S L H R+ H+ P
Sbjct: 25 FTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 104 bits (261), Expect = 9e-30
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 9 LKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNH 68
IHSGE+PY C C K F+R S L H+R+HTGEKPY+C CG AF+Q + L NH
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 69 AKVGKCKVHTGEKPH 83
++HT
Sbjct: 62 Q-----RIHTSGPSS 71
Score = 80.2 bits (199), Expect = 2e-20
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
FS+S L H+R+H+GE+PY+C C K F+++S L NH+RIHT
Sbjct: 24 FSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 79.4 bits (197), Expect = 3e-20
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 37 LWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKF 96
IH+GEKPY C CG AF++++ L H +V HTGEKP+ C C FS
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV-----HTGEKPYKCLECGKAFSQNS 56
Query: 97 ALKRHRLIH 105
L H+ IH
Sbjct: 57 GLINHQRIH 65
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 104 bits (261), Expect = 1e-29
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
F +S L H IHS RPY C+ C K F + S + H IHTGEKP++C +CG AF+Q+
Sbjct: 11 FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQS 70
Query: 63 THLKNHAKVGKCKVHTG 79
++L H+ + HTG
Sbjct: 71 SNLITHS-----RKHTG 82
Score = 96.3 bits (241), Expect = 1e-26
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
+ C++C K+F R STL H IH+ +PY C CG F+Q + +K H +HTGEK
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-----FIHTGEK 56
Query: 82 PHHCDICDVGFSDKFALKRHRLIH 105
PH C +C FS L H H
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKH 80
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 103 bits (259), Expect = 2e-28
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSA 58
F L NH R+H+GE+P+ C C K FAR L H+R HTGEKP++C C
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 59 FNQATHLKNHAKVGKCKVHTGEKPHHCD 86
F ++ K H VHT +K
Sbjct: 132 FANSSDRKKHM-----HVHTSDKSGPSS 154
Score = 102 bits (257), Expect = 3e-28
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 3 FSQSPHLKNHERIHSGERPYQ---------CEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
FS L H + P Q C K+F L NH R+HTGEKP+ C
Sbjct: 35 FSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCP 94
Query: 54 I--CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI--CDVGFSDKFALKRHRLIH 105
CG F ++ +LK H + HTGEKP C+ CD F++ K+H +H
Sbjct: 95 FPGCGKIFARSENLKIHKRT-----HTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 96.6 bits (241), Expect = 7e-26
Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYR---------CS 53
+ + I + + C++TF+ L H + P + C
Sbjct: 7 GQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP 66
Query: 54 ICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI--CDVGFSDKFALKRHRLIH 105
G +F L NH +VHTGEKP C C F+ LK H+ H
Sbjct: 67 REGKSFKAKYKLVNHI-----RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 62.7 bits (153), Expect = 7e-13
Identities = 12/88 (13%), Positives = 20/88 (22%), Gaps = 14/88 (15%)
Query: 27 CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHH-- 84
+ + + I + C F+ L H + P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHV-----TMEHVGGPEQNN 57
Query: 85 -------CDICDVGFSDKFALKRHRLIH 105
C F K+ L H +H
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNHIRVH 85
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 100 bits (251), Expect = 4e-28
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 8 HLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGE----KPYRCSICGSAFNQAT 63
+ R H+GE+PY C C+KTF + L H + + + CS CG F +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 64 HLKNHAKVGKCKVHTGEKPHHCDIC 88
+ HA G +
Sbjct: 62 TMARHA-----DNCAGPDGVEGENS 81
Score = 84.1 bits (209), Expect = 7e-22
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 3 FSQSPHLKNHERIHSGE----RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSA 58
F Q L H + + + C C KTF R +T+ H G G +
Sbjct: 25 FRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPS 84
Query: 59 F 59
Sbjct: 85 S 85
Score = 70.6 bits (174), Expect = 1e-16
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 36 TLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE----KPHHCDICDVG 91
+ + R HTGEKPY CS C F Q L H K + C C
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH-----FKRYHDPNFVPAAFVCSKCGKT 56
Query: 92 FSDKFALKRHRLIH 105
F+ + + RH
Sbjct: 57 FTRRNTMARHADNC 70
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 93.4 bits (233), Expect = 2e-25
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 3 FSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFN 60
+++S HLK H R H+GE+PY C + C FAR L H R HTG +P++C C AF+
Sbjct: 17 YTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 76
Query: 61 QATHLKNHAKV 71
++ HL H K
Sbjct: 77 RSDHLALHMKR 87
Score = 86.4 bits (215), Expect = 9e-23
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFNQATHLKNHAKVGK 73
+ C KT+ + S L H R HTGEKPY C CG F ++ L H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY---- 57
Query: 74 CKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+ HTG +P C CD FS L H H
Sbjct: 58 -RKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 59.9 bits (146), Expect = 2e-12
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
F++S L H R H+G RP+QC+ C++ F+R L H + H
Sbjct: 47 FARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 91.9 bits (229), Expect = 9e-25
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 3 FSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFN 60
+++S HLK H R H+GE+PY+C E C+ FAR L H R HTG KP++C +C +F+
Sbjct: 27 YTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS 86
Query: 61 QATHLKNHAKV 71
++ HL H K
Sbjct: 87 RSDHLALHMKR 97
Score = 91.9 bits (229), Expect = 1e-24
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFN 60
S RIH + P C K + + S L H R HTGEKPY+C+ C F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 61 QATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHE 106
++ L H + HTG KP C +C+ FS L H H+
Sbjct: 59 RSDELTRHY-----RKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 55.7 bits (135), Expect = 7e-11
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 30 TFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI-- 87
+ RRIH + P C + +++HLK H + HTGEKP+ C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHL-----RTHTGEKPYKCTWEG 52
Query: 88 CDVGFSDKFALKRHRLIH 105
CD F+ L RH H
Sbjct: 53 CDWRFARSDELTRHYRKH 70
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 89.5 bits (223), Expect = 4e-24
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 14 RIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGK 73
S P +C C + + + L H RIH ++P++C+ C Q ++L H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM---- 57
Query: 74 CKVHTGEKPHHC 85
K G+
Sbjct: 58 -KKFHGDMSGPS 68
Score = 75.6 bits (187), Expect = 9e-19
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
S L+ HERIH +RP++C C + S L H + G+ S
Sbjct: 19 CSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 71.4 bits (176), Expect = 4e-17
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRH 101
+ P +CS C + + L+ H ++ H ++P C+ C L +H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI-----HCTDRPFKCNYCSFDTKQPSNLSKH 56
Query: 102 RLIH 105
Sbjct: 57 MKKF 60
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 88.8 bits (221), Expect = 9e-24
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 16 HSGERPYQCEV--CEKTFARHSTLWNHRRI-HTGEKPYRCS--ICGSAFNQATHLKNHAK 70
SG C+ C + F+ L +H++ H +K + C CG +FN HLK H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 71 VGKCKVHTGEKPHHCDIC 88
+ H+ + + C+
Sbjct: 62 L-----HSDTRDYICEFS 74
Score = 84.5 bits (210), Expect = 5e-22
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 3 FSQSPHLKNHERI-HSGERPYQCE--VCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF 59
FS +L +H++ H ++ + C C K+F L H ++H+ + Y C G +
Sbjct: 19 FSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 66.4 bits (163), Expect = 4e-15
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 44 HTGEKPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD--ICDVGFSDKFALK 99
+G C CG F+ +L +H K H +K C C F+ K LK
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKY----QHIHQKSFSCPEPACGKSFNFKKHLK 57
Query: 100 RHRLIH 105
H +H
Sbjct: 58 EHMKLH 63
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 84.5 bits (210), Expect = 3e-22
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
R + CEVC + FAR L H R HT EKPY C +C AF + L HA+ K+H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ----KIHSG 56
Query: 80 EK 81
Sbjct: 57 NL 58
Score = 72.9 bits (180), Expect = 9e-18
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNH-RRIHTGEK 48
F++ HLK H R H+ E+PY C +C + F R L H ++IH+G
Sbjct: 12 FARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 59.4 bits (145), Expect = 1e-12
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRH 101
+ + C +C AF + HLK H + HT EKP+ C +C+ F+ + L RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-----HTNEKPYPCGLCNRAFTRRDLLIRH 49
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 84.6 bits (210), Expect = 5e-22
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 3 FSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFN 60
F + LK H+ H+ + PY+C E C+K F+ S L H ++H G + C
Sbjct: 13 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGK 72
Query: 61 QATHLKNHAK 70
T H
Sbjct: 73 TWTLYLKHVA 82
Score = 72.7 bits (179), Expect = 2e-17
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 22 YQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCS--ICGSAFNQATHLKNHAKVGKCKVH 77
Y C C K F +H+ L H+ HT + PY C C F+ + LK H KVH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-----EKVH 56
Query: 78 TGEKPHHCDICDVGFSDKFALKRHR 102
G D C +H
Sbjct: 57 AGYPCKKDDSCSFVGKTWTLYLKHV 81
Score = 43.8 bits (104), Expect = 1e-06
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 3 FSQSPHLKNHERIHSG---ERPYQCEVCEKTFARHSTLWNHRRIH 44
FS LK HE++H+G ++ C KT+ + H
Sbjct: 43 FSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH--VAECH 85
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 81.4 bits (202), Expect = 4e-21
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 13 ERIHSGERPYQCEVCEKTFARHSTLWNHRRI--HTGEKPYRCSICGSAFNQATHLKNHAK 70
E GE Y+C+VC + + S H K Y C C F + ++ H K
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 71 V 71
+
Sbjct: 62 I 62
Score = 74.5 bits (184), Expect = 2e-18
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRH 101
GE YRC +C + ++ H K + C C F+ K + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVT---SHKRNVKVYPCPFCFKEFTRKDNMTAH 59
Query: 102 RLIHEK 107
I K
Sbjct: 60 VKIIHK 65
Score = 60.3 bits (147), Expect = 6e-13
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 3 FSQSPHLKNHERI--HSGERPYQCEVCEKTFARHSTLWNHRRIHTG 46
++ + H + Y C C K F R + H +I
Sbjct: 20 YTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 79.8 bits (197), Expect = 3e-20
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHT---GEKPYRCSICGSAFNQATHLKNHAKVG 72
SG QCE+C T + ++L H+R H + C CG F + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH---- 57
Query: 73 KCKVHTGEKPHHCDIC 88
+ K H +
Sbjct: 58 RSKSHPALLLAPQESS 73
Score = 68.6 bits (168), Expect = 6e-16
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 44 HTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHT---GEKPHHCDICDVGFSDKFALKR 100
+G +C ICG Q L H + H C+ C F ++
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH-----QRKHAETVAALRFPCEFCGKRFEKPDSVAA 56
Query: 101 HRLIH 105
HR
Sbjct: 57 HRSKS 61
Score = 60.1 bits (146), Expect = 1e-12
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 3 FSQSPHLKNHERIHS---GERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC 52
Q L H+R H+ + CE C K F + ++ HR
Sbjct: 17 CRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Score = 27.4 bits (61), Expect = 0.87
Identities = 2/27 (7%), Positives = 5/27 (18%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEK 29
F + + H +
Sbjct: 48 FEKPDSVAAHRSKSHPALLLAPQESSG 74
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 76.1 bits (188), Expect = 4e-19
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNH-RRIHTGEKPYRCSICGSAFNQA 62
+ S +PY C+ C K F+R L H +++HT E+P++C + S +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
Score = 73.4 bits (181), Expect = 4e-18
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSD 94
+ + KPY C CG F++ HL H K +VHT E+PH C + G S
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIK----QVHTSERPHKCQVWVSGPSS 53
Score = 49.9 bits (120), Expect = 4e-09
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 3 FSQSPHLKNHE-RIHSGERPYQCEVCEKTFA 32
FS+ HL H ++H+ ERP++C+V +
Sbjct: 22 FSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRH-RLIH 105
+ KP+ C C GFS L H + +H
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 75.0 bits (185), Expect = 2e-18
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 1 MLFSQSPHLKNHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSA 58
M +L N+ RPY C E C++ F+R L H RIHTG+KP++C IC
Sbjct: 1 MEPHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Query: 59 FNQATHLKNHAK 70
F+++ HL H +
Sbjct: 59 FSRSDHLTTHIR 70
Score = 58.5 bits (142), Expect = 4e-12
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHT 45
FS+S L H RIH+G++P+QC +C + F+R L H R HT
Sbjct: 31 FSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 55.0 bits (133), Expect = 8e-11
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 40 HRRIHTGEKPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFA 97
+ +PY C + C F+++ L H ++ HTG+KP C IC FS
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI-----HTGQKPFQCRICMRNFSRSDH 64
Query: 98 LKRHRLIH 105
L H H
Sbjct: 65 LTTHIRTH 72
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 3e-18
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ S E+PY+CE C K + R L H+R+H GEK S
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 64.8 bits (159), Expect = 6e-15
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ + EKPY+C CG +N+ +L H +VH GEK
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ-----RVHMGEKTSGP 43
Score = 38.2 bits (90), Expect = 6e-05
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
+++ +L H+R+H GE+
Sbjct: 22 YNRRLNLDMHQRVHMGEKTSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+ EKP+ C+ C G++ + L H+ +H
Sbjct: 5 SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 4e-18
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SGE+PY+C C K F RH+ L HRRIHTG +P S
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 66.4 bits (163), Expect = 2e-15
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GEKPY+CS CG AF++ THL H ++HTG +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHR-----RIHTGYRPSGP 43
Score = 40.6 bits (96), Expect = 8e-06
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F + HL H RIH+G RP
Sbjct: 22 FHRHTHLNEHRRIHTGYRPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP+ C C F L HR IH
Sbjct: 5 SSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 4e-18
Identities = 19/42 (45%), Positives = 20/42 (47%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SGERPY C C K F RHS L H + H EK S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 62.5 bits (153), Expect = 5e-14
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GE+PY C+ CG F + +HL H K H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL-----KRHFREKSSGP 43
Score = 39.8 bits (94), Expect = 1e-05
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F + HL H + H E+
Sbjct: 22 FGRHSHLIEHLKRHFREKSSGP 43
Score = 32.9 bits (76), Expect = 0.006
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GE+P+ C+ C F L H H
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 5e-18
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C+VC K F S L H +H+GE+P S
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 66.0 bits (162), Expect = 3e-15
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY+C +CG AF ++HL H VH+GE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHH-----SVHSGERPSGP 43
Score = 41.0 bits (97), Expect = 6e-06
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F S HL H +HSGERP
Sbjct: 22 FRVSSHLVQHHSVHSGERPSGP 43
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C +C F L +H +H
Sbjct: 5 SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 5e-18
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
GE+ Y+C+VC K F++ S L H+R+HTGEKP S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 67.2 bits (165), Expect = 9e-16
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
GEK Y+C +CG F+Q++HL+ H +VHTGEKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH-----QRVHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 3e-06
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FSQS HL+ H+R+H+GE+P
Sbjct: 22 FSQSSHLQTHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
GEK + CD+C FS L+ H+ +H
Sbjct: 5 SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 5e-18
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+P++C++C K+F S L H +HT EKP S
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 68.7 bits (169), Expect = 3e-16
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD 86
+ TGEKP++C ICG +F + L H VHT EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH-----SMVHTAEKPSGPS 44
Score = 39.8 bits (94), Expect = 1e-05
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F L H +H+ E+P
Sbjct: 22 FCGRSRLNRHSMVHTAEKPSGPS 44
Score = 37.9 bits (89), Expect = 8e-05
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP CDIC F + L RH ++H
Sbjct: 5 SSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 6e-18
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ SGE+PY+C C K F ++S L NH RIHTGEKP S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 66.0 bits (162), Expect = 2e-15
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ +GEKPY+C+ CG F Q +HL NH ++HTGEKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHW-----RIHTGEKPSGP 43
Score = 40.9 bits (97), Expect = 7e-06
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+Q+ HL NH RIH+GE+P
Sbjct: 22 FTQNSHLTNHWRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP+ C+ C F+ L H IH
Sbjct: 5 SSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 73.0 bits (180), Expect = 6e-18
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY+CE C K F L+ H +HTGEKP S
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 63.7 bits (156), Expect = 2e-14
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKPY+C CG F L H VHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHH-----MVHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 1e-05
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F L H +H+GE+P
Sbjct: 22 FICRRDLYTHHMVHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 4e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C GF + L H ++H
Sbjct: 5 SSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.5 bits (179), Expect = 7e-18
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+G++ ++C C+KTF + S+L H+RIHTGEKP S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 64.5 bits (158), Expect = 1e-14
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
G+K ++C+ C F Q++ L H ++HTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQ-----RIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+QS L H+RIH+GE+P
Sbjct: 22 FTQSSSLTVHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 4e-04
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
G+K C+ C F+ +L H+ IH
Sbjct: 5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.5 bits (179), Expect = 8e-18
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C+VC K+F S+L H+RIHTGEKP S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 64.1 bits (157), Expect = 1e-14
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY+C +C +F + L H ++HTGEKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH-----QRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 3e-05
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F L H+RIH+GE+P
Sbjct: 22 FRYGSSLTVHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ CD+C F +L H+ IH
Sbjct: 5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.5 bits (179), Expect = 8e-18
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C+VC K F+ H++L H+R+H+GEKP S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 63.7 bits (156), Expect = 2e-14
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY C +C AF+ L H +VH+GEKP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQ-----RVHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FS L H+R+HSGE+P
Sbjct: 22 FSHHASLTQHQRVHSGEKPSGPS 44
Score = 35.2 bits (82), Expect = 7e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ CD+C FS +L +H+ +H
Sbjct: 5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 72.6 bits (179), Expect = 9e-18
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+ Y C+ C K+F+R L H R+H+GEKP S
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 64.1 bits (157), Expect = 1e-14
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEK Y C CG +F++A L H ++H+GEKP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHE-----RLHSGEKPSGP 43
Score = 40.6 bits (96), Expect = 8e-06
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS++P L HER+HSGE+P
Sbjct: 22 FSRAPCLLKHERLHSGEKPSGP 43
Score = 35.2 bits (82), Expect = 8e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEK ++C C FS L +H +H
Sbjct: 5 SSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 1e-17
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C C K F HS L H+ IHTGEKP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 64.1 bits (157), Expect = 1e-14
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY+C+ CG AF ++L H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQ-----VIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F +L H+ IH+GE+P
Sbjct: 22 FRAHSNLTTHQVIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C F L H++IH
Sbjct: 5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 1e-17
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +G +PY C C K F+ +S+L H+ IHTGEKP S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 63.3 bits (155), Expect = 3e-14
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TG KPY C+ CG AF+ + L H +HTGEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQ-----VIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FS L H+ IH+GE+P
Sbjct: 22 FSVYSSLTTHQVIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TG KP+ C+ C FS +L H++IH
Sbjct: 5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 1e-17
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY C VC K F + L H R+HT E S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 65.2 bits (160), Expect = 5e-15
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD 86
+ TGEKPY C++CG AF + HL H +VHT E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH-----LRVHTQETLSGPS 44
Score = 41.0 bits (97), Expect = 5e-06
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F S HL H R+H+ E
Sbjct: 22 FVLSAHLNQHLRVHTQETLSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C++C F L +H +H
Sbjct: 5 SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 1e-17
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY+C C K F +S L H+RIHTGEKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 63.7 bits (156), Expect = 2e-14
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKPY+C+ CG F ++L H ++HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQ-----RIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F + +L H+RIH+GE+P
Sbjct: 22 FRHNSYLSRHQRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C F L RH+ IH
Sbjct: 5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.1 bits (178), Expect = 1e-17
Identities = 23/42 (54%), Positives = 26/42 (61%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GER Y+C C K FAR STL H+RIHTGEKP S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 63.3 bits (155), Expect = 3e-14
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGE+ Y CS CG AF + + L H ++HTGEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQ-----RIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 4e-05
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F++ L H+RIH+GE+P
Sbjct: 22 FARKSTLIMHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 7e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGE+ + C C F+ K L H+ IH
Sbjct: 5 SSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 1e-17
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ SGE+P++CE C K F ++S L +H+R+HTGEKP S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 65.2 bits (160), Expect = 6e-15
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ +GEKP++C CG F Q + L +H +VHTGEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH-----QRVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+Q+ L +H+R+H+GE+P
Sbjct: 22 FTQNSQLHSHQRVHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 4e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP C+ C F+ L H+ +H
Sbjct: 5 SSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.7 bits (177), Expect = 2e-17
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY+C C K F ++S L HR IHTGEKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 66.0 bits (162), Expect = 3e-15
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKPY+C+ CG F Q +HL H +HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR-----GIHTGEKPSGP 43
Score = 40.5 bits (96), Expect = 8e-06
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+Q+ HL H IH+GE+P
Sbjct: 22 FTQNSHLVRHRGIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C F+ L RHR IH
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 2e-17
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY CE C K F S L H+RIHTGEKP S
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 63.7 bits (156), Expect = 2e-14
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY C CG AF + L+ H ++HTGEKP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQ-----RIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F L+ H+RIH+GE+P
Sbjct: 22 FIHDSQLQEHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP++C+ C F L+ H+ IH
Sbjct: 5 SSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 2e-17
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SGE+PY C+ C K F + L H+RIHTGEKP S
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 64.1 bits (157), Expect = 1e-14
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GEKPY C CG AF + L H ++HTGEKP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQ-----RIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F S L H+RIH+GE+P
Sbjct: 22 FGLSAELVRHQRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 5e-04
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP+ CD C F L RH+ IH
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.7 bits (177), Expect = 2e-17
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C C K F R+S L H+ IHTGEKP S
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 64.8 bits (159), Expect = 9e-15
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY+C CG F + +HL H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQ-----LIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F ++ HL H+ IH+GE+P
Sbjct: 22 FRRNSHLARHQLIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C C F L RH+LIH
Sbjct: 5 SSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 2e-17
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GER Y+C C K F + STL H+RIH GEKP S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 63.7 bits (156), Expect = 2e-14
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGE+ Y CS CG AF Q + L H ++H GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQ-----RIHRGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F Q L H+RIH GE+P
Sbjct: 22 FIQKSTLSMHQRIHRGEKPSGP 43
Score = 35.2 bits (82), Expect = 7e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGE+ + C C F K L H+ IH
Sbjct: 5 SSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 2e-17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+G++PY+C C K F ++S L HR IHTGEKP S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 65.2 bits (160), Expect = 5e-15
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TG+KPY+C+ CG F Q +HL H +HTGEKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHR-----GIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 5e-06
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+Q+ HL H IH+GE+P
Sbjct: 22 FTQNSHLARHRGIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TG+KP+ C+ C F+ L RHR IH
Sbjct: 5 SSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+P+ C C K F+ H L HRRIHTGEKP S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 62.1 bits (152), Expect = 7e-14
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKP+ C CG AF+ L H ++HTGEKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR-----RIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FS L H RIH+GE+P
Sbjct: 22 FSDHIGLNQHRRIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 4e-04
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP C C FSD L +HR IH
Sbjct: 5 SSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY+C C K FA+ + L H+RIHTGEKP S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 64.8 bits (159), Expect = 8e-15
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKPYRC CG AF Q +L H ++HTGEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQ-----RIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+Q +L H+RIH+GE+P
Sbjct: 22 FAQKANLTQHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 7e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C C F+ K L +H+ IH
Sbjct: 5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SGE+PY C C KTF++ S L H+R HTGEKP S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 62.9 bits (154), Expect = 4e-14
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GEKPY C+ CG F+Q + L H + HTGEKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQ-----RTHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FSQ L H+R H+GE+P
Sbjct: 22 FSQKSILSAHQRTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 8e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP+ C+ C FS K L H+ H
Sbjct: 5 SSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY C C K F+ S L H R H+GEKP S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 61.8 bits (151), Expect = 1e-13
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ GEKPY CS CG AF+ ++L H + H+GEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHM-----RTHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FS +L H R HSGE+P
Sbjct: 22 FSSKSYLIIHMRTHSGEKPSGPS 44
Score = 34.1 bits (79), Expect = 0.002
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
GEKP+ C C FS K L H H
Sbjct: 5 SSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+CE C K + L H+++HTGE+P S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 65.6 bits (161), Expect = 4e-15
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY+C CG +N +L H KVHTGE+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ-----KVHTGERPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
++ +L H+++H+GERP
Sbjct: 22 YNSKFNLDMHQKVHTGERPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C G++ KF L H+ +H
Sbjct: 5 SSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+P++C C K+F+ S L H+RIHTGEKP S
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 62.5 bits (153), Expect = 5e-14
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKP+ C+ CG +F+ ++ L H ++HTGEKP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQ-----RIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FS S L H+RIH+GE+P
Sbjct: 22 FSISSQLATHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 5e-04
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP C C FS L H+ IH
Sbjct: 5 SSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+G+RPY+C C K F S+L HRR HTGEKP S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 62.2 bits (152), Expect = 8e-14
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TG++PY C CG AF + L H + HTGEKP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHR-----RSHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 4e-05
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F L H R H+GE+P
Sbjct: 22 FKTKSSLICHRRSHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 9e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TG++P+ C C F K +L HR H
Sbjct: 5 SSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICG 56
+ SGE+P++CE C K F +S ++H+R H+GEKP S G
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 63.0 bits (154), Expect = 4e-14
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD 86
+ +GEKP++C CG F + +H + H+GEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQ-----RSHSGEKPSGPS 44
Score = 39.8 bits (94), Expect = 2e-05
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F + +H+R HSGE+P
Sbjct: 22 FYTNSQCYSHQRSHSGEKPSGPS 44
Score = 35.2 bits (82), Expect = 9e-04
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP C+ C GF H+ H
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY C C K+F + S L HRRIHTGEKP S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 64.1 bits (157), Expect = 1e-14
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY C+ CG +F Q +HL H ++HTGEKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR-----RIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F Q HL H RIH+GE+P
Sbjct: 22 FIQKSHLNRHRRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 5e-04
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C F K L RHR IH
Sbjct: 5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 2e-17
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY+C C K F++ S L H+RIHTGEKP S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 64.8 bits (159), Expect = 7e-15
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKPY+C+ CG AF+Q + L H ++HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQ-----RIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 7e-06
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FSQ+ L H+RIH+GE+P
Sbjct: 22 FSQTSKLARHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C FS L RH+ IH
Sbjct: 5 SSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 3e-17
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C C K F ++S L NH+RIHTG KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 65.2 bits (160), Expect = 6e-15
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY+C+ CG F Q +HL NH ++HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQ-----RIHTGVKPSGP 43
Score = 41.0 bits (97), Expect = 6e-06
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+Q+ HL NH+RIH+G +P
Sbjct: 22 FTQNSHLANHQRIHTGVKPSGPS 44
Score = 35.2 bits (82), Expect = 8e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C F+ L H+ IH
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C C K F S+L H+ H+GEKP S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 62.6 bits (153), Expect = 5e-14
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY+C+ CG AF + L H H+GEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQ-----ATHSGEKPSGP 43
Score = 39.1 bits (92), Expect = 3e-05
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F L H+ HSGE+P
Sbjct: 22 FRARSSLAIHQATHSGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C F + +L H+ H
Sbjct: 5 SSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+ Y+C C K F+R+S L H++IHTGEKP S
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 64.1 bits (157), Expect = 1e-14
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEK Y+C+ CG F++ + L H K+HTGEKP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQ-----KIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 9e-06
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FS++ L H++IH+GE+P
Sbjct: 22 FSRNSQLSQHQKIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEK + C+ C FS L +H+ IH
Sbjct: 5 SSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GERPY C VC K F S L H++IHTGEKP S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 64.0 bits (157), Expect = 1e-14
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGE+PY C++CG AF ++L H K+HTGEKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQ-----KIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 3e-05
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+ +L H++IH+GE+P
Sbjct: 22 FTDRSNLIKHQKIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGE+P+ C +C F+D+ L +H+ IH
Sbjct: 5 SSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SGE+P++C+ C K F ++ L +H RIHTGEKP S
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 64.4 bits (158), Expect = 1e-14
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GEKP++C CG AF Q HL +H ++HTGEKP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHL-----RIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 8e-06
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F Q+ HL +H RIH+GE+P
Sbjct: 22 FRQNIHLASHLRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP C C F L H IH
Sbjct: 5 SSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ SGE+PY+C C K + R L H+R+HTGEK S
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 64.9 bits (159), Expect = 7e-15
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD 86
+ +GEKPY+C CG + + L H +VHTGEK
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH-----QRVHTGEKLSGPS 44
Score = 39.4 bits (93), Expect = 2e-05
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
+ + L H+R+H+GE+
Sbjct: 22 YKRRLDLDFHQRVHTGEKLSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP+ C C G+ + L H+ +H
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +G + ++C C K F R STL H++IHTGEKP S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 64.1 bits (157), Expect = 2e-14
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TG K + C+ CG AF + + L H K+HTGEKP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQ-----KIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 5e-05
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F++ L H++IH+GE+P
Sbjct: 22 FTRKSTLSMHQKIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 9e-04
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TG K C C F+ K L H+ IH
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C C K F ++S L HR IHTGEKP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 64.8 bits (159), Expect = 8e-15
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY+C+ CG F Q +HL H +HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR-----GIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 8e-06
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+Q+ HL H IH+GE+P
Sbjct: 22 FTQNSHLARHRGIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C F+ L RHR IH
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+P++C C K F+R S L H ++HTGEKP S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 63.7 bits (156), Expect = 2e-14
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKP++C CG F++ + L H K+HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH-----HKLHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS+ L H ++H+GE+P
Sbjct: 22 FSRRSALNVHHKLHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 4e-04
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP C C GFS + AL H +H
Sbjct: 5 SSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE P+ C C K F + L H++IHTGE+P S
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 64.1 bits (157), Expect = 1e-14
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGE P+ CS CG F T+L H K+HTGE+P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQ-----KIHTGERPSGP 43
Score = 39.0 bits (92), Expect = 3e-05
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+ +L H++IH+GERP
Sbjct: 22 FTHKTNLIIHQKIHTGERPSGP 43
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGE P C C F+ K L H+ IH
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SGE+P+QCE C K F ++S L +H+R+HTGEKP S
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 64.1 bits (157), Expect = 1e-14
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GEKP++C CG F Q +HL +H +VHTGEKP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQ-----RVHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 6e-06
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+Q+ HL +H+R+H+GE+P
Sbjct: 22 FTQNSHLHSHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 8e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP C+ C F+ L H+ +H
Sbjct: 5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY C C K F S L H++IHT +KP S
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 65.2 bits (160), Expect = 5e-15
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKPY C+ CG AF ++L H K+HT +KP
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQ-----KIHTKQKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+ +L H++IH+ ++P
Sbjct: 22 FTIRSNLIKHQKIHTKQKPSGPS 44
Score = 35.6 bits (83), Expect = 6e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C C F+ + L +H+ IH
Sbjct: 5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C C K F ++S L HRR+HTG KP S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 64.8 bits (159), Expect = 8e-15
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY+C+ CG F Q +HL H +VHTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR-----RVHTGGKPSGP 43
Score = 41.0 bits (97), Expect = 7e-06
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+Q+ HL H R+H+G +P
Sbjct: 22 FTQNSHLARHRRVHTGGKPSGPS 44
Score = 35.2 bits (82), Expect = 8e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C F+ L RHR +H
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C VC K F+ +L H+RIH+G+KP S
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 62.5 bits (153), Expect = 5e-14
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY CS+CG AF+ L H ++H+G+KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQ-----RIHSGKKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FS L H+RIHSG++P
Sbjct: 22 FSHRQSLSVHQRIHSGKKPSGPS 44
Score = 35.2 bits (82), Expect = 7e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C +C FS + +L H+ IH
Sbjct: 5 SSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+G +PYQC C K F++ S L H+R+HTGEKP S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 63.7 bits (156), Expect = 2e-14
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TG KPY+C+ CG AF+Q + L H +VHTGEKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQ-----RVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 8e-06
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FSQ+ L H+R+H+GE+P
Sbjct: 22 FSQTSKLARHQRVHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TG KP+ C+ C FS L RH+ +H
Sbjct: 5 SSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 3e-17
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C +C K+F + S L H++IHTGEKP S
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 62.9 bits (154), Expect = 4e-14
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY CSICG +F + + L H ++HTGEKP
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQ-----QIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F++ L H++IH+GE+P
Sbjct: 22 FTKKSQLHVHQQIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 6e-04
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C IC F+ K L H+ IH
Sbjct: 5 SSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 4e-17
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+P++C C+K F S L H+R HTGEKP S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 62.9 bits (154), Expect = 4e-14
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKP+ CS C AFN ++L H + HTGEKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQ-----RTHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 4e-05
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+ +L H+R H+GE+P
Sbjct: 22 FNTKSNLIVHQRTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 8e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP C C F+ K L H+ H
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 4e-17
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GERP++C C K+F + + L H+RIHTGEKP S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 64.5 bits (158), Expect = 1e-14
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGE+P++C+ CG +F Q+ HL H ++HTGEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQ-----RIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 9e-06
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F QS HL H+RIH+GE+P
Sbjct: 22 FIQSAHLIQHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 7e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGE+PH C+ C F L +H+ IH
Sbjct: 5 SSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 4e-17
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE PY+C C K F+R L +H+R H GEKP S
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 62.9 bits (154), Expect = 4e-14
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGE PY C CG AF++ L +H + H GEKP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQ-----RTHAGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS+ L +H+R H+GE+P
Sbjct: 22 FSRKYQLISHQRTHAGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGE P+ C C FS K+ L H+ H
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 4e-17
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY+C C K+F S L H++ HTGE+ S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 64.5 bits (158), Expect = 1e-14
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKPY+CS CG +F + L+ H K HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQ-----KCHTGERHSGP 43
Score = 38.3 bits (90), Expect = 5e-05
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+ L+ H++ H+GER
Sbjct: 22 FTWKSRLRIHQKCHTGERHSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C C F+ K L+ H+ H
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 70.6 bits (174), Expect = 4e-17
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +G +PY C C KTF+ S L H+R HTG KP S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 61.4 bits (150), Expect = 1e-13
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TG KPY CS C F+ + L H + HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQ-----RSHTGVKPSGP 43
Score = 38.3 bits (90), Expect = 5e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS L H+R H+G +P
Sbjct: 22 FSLKSQLIVHQRSHTGVKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TG KP+ C C FS K L H+ H
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.7 bits (174), Expect = 4e-17
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY+C C K F +S+ H+R+HTG++P S
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 63.8 bits (156), Expect = 2e-14
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKPY+C CG AF + H ++HTG++P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQ-----RLHTGQRPSGP 43
Score = 39.5 bits (93), Expect = 2e-05
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F + H+R+H+G+RP
Sbjct: 22 FGDNSSCTQHQRLHTGQRPSGPS 44
Score = 35.2 bits (82), Expect = 8e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C C F D + +H+ +H
Sbjct: 5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 5e-17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C C K F S L+ H++IHTGEKP S
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 64.1 bits (157), Expect = 2e-14
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPYRC+ CG AF ++L H K+HTGEKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQ-----KIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+ +L H++IH+GE+P
Sbjct: 22 FTDRSNLFTHQKIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 3e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C C F+D+ L H+ IH
Sbjct: 5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 5e-17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C C K+F + S L H+RIHTGE P S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 62.6 bits (153), Expect = 5e-14
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY CS CG +F + + L H ++HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQ-----RIHTGENPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F + L H+RIH+GE P
Sbjct: 22 FIKKSQLHVHQRIHTGENPSGP 43
Score = 36.0 bits (84), Expect = 4e-04
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C C F K L H+ IH
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 5e-17
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SGERP++C C K F R S L H R+H+ EK S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 61.4 bits (150), Expect = 1e-13
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GE+P++C+ CG F + +HL H ++H+ EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHL-----RLHSREKSSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F + HL H R+HS E+
Sbjct: 22 FGRRSHLAGHLRLHSREKSSGP 43
Score = 35.2 bits (82), Expect = 7e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GE+P C+ C GF + L H +H
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 5e-17
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+PY+C C K F R S L H++ HTGE+ S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 64.1 bits (157), Expect = 2e-14
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TGEKPY+CS CG AF + + L H + HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQ-----QSHTGERHSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F++ L H++ H+GER
Sbjct: 22 FTRKSGLHIHQQSHTGERHSGP 43
Score = 35.9 bits (84), Expect = 4e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C C F+ K L H+ H
Sbjct: 5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 5e-17
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+P++C C K++ + L H+R+HTGEKP S
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 64.8 bits (159), Expect = 8e-15
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKP++C CG ++NQ HL H +VHTGEKP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQ-----RVHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 1e-05
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
++Q HL H+R+H+GE+P
Sbjct: 22 YNQRVHLTQHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP C C ++ + L +H+ +H
Sbjct: 5 SSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.3 bits (173), Expect = 5e-17
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C C K F+ S+L H+ IHTG+KP S
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 61.8 bits (151), Expect = 1e-13
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY C+ CG AF+ + L H +HTG+KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQ-----AIHTGKKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FS L H+ IH+G++P
Sbjct: 22 FSVRSSLTTHQAIHTGKKPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C FS + +L H+ IH
Sbjct: 5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.9 bits (172), Expect = 7e-17
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+P++C C K+F+ +S L H+RIHTGE P S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 61.8 bits (151), Expect = 1e-13
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKP+ C CG +F+ + L H ++HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQ-----RIHTGENPSGP 43
Score = 39.1 bits (92), Expect = 3e-05
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS + L H+RIH+GE P
Sbjct: 22 FSFNSQLIVHQRIHTGENPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKPH C C FS L H+ IH
Sbjct: 5 SSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 69.9 bits (172), Expect = 7e-17
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ GER ++C C K F + S HRRIHTGEKP S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 63.7 bits (156), Expect = 2e-14
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ GE+ +RCS CG F QA++ H ++HTGEKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHR-----RIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F Q+ + H RIH+GE+P
Sbjct: 22 FLQASNFIQHRRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
GE+ H C C F +HR IH
Sbjct: 5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.9 bits (172), Expect = 8e-17
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C+VC K F + + L H++ HTGEKP S
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 64.1 bits (157), Expect = 1e-14
Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY C +C AF Q HL H K HTGEKP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQ-----KTHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 7e-06
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+Q HL H++ H+GE+P
Sbjct: 22 FTQKAHLAQHQKTHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C +C F+ K L +H+ H
Sbjct: 5 SSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 69.9 bits (172), Expect = 1e-16
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY C+ C K+F S L H+R+H+GEKP S
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 63.0 bits (154), Expect = 3e-14
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY C CG +F A+ L H +VH+GEKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQ-----RVHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F + L H+R+HSGE+P
Sbjct: 22 FRWASCLLKHQRVHSGEKPSGPS 44
Score = 34.9 bits (81), Expect = 0.001
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP++C C F L +H+ +H
Sbjct: 5 SSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 69.4 bits (171), Expect = 1e-16
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC 52
+GE+PY+C C+K F S L H+R HTGE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 63.3 bits (155), Expect = 3e-14
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY C+ C AFN ++L H + HTGE
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQ-----RTHTGESGPSS 43
Score = 38.6 bits (91), Expect = 4e-05
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+ +L H+R H+GE
Sbjct: 22 FNTKSNLMVHQRTHTGESGPSS 43
Score = 35.1 bits (82), Expect = 8e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C+ C F+ K L H+ H
Sbjct: 5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 69.5 bits (171), Expect = 1e-16
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +G++P++C C K+F L H+RIHTGEK S
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 62.6 bits (153), Expect = 6e-14
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TG+KP+ C+ CG +F +L H ++HTGEK
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQ-----RIHTGEKSGPS 43
Score = 39.1 bits (92), Expect = 3e-05
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F +L H+RIH+GE+
Sbjct: 22 FRAKGNLVTHQRIHTGEKSGPS 43
Score = 35.2 bits (82), Expect = 9e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TG+KP C C F K L H+ IH
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 1e-16
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
GE+PYQC C K+F+ L H HT EKP S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 61.0 bits (149), Expect = 2e-13
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
GEKPY+CS CG +F+ + L H HT EKP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHW-----ITHTREKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS S L H H+ E+P
Sbjct: 22 FSGSYRLTQHWITHTREKPSGP 43
Score = 35.6 bits (83), Expect = 6e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
GEKP+ C C FS + L +H + H
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 69.4 bits (171), Expect = 1e-16
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC 52
+ +G +PY C C K F S L H R HTGE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 62.5 bits (153), Expect = 5e-14
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TG KPY C+ CG AF ++L H + HTGE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT-----RTHTGESGPSS 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F +L H R H+GE
Sbjct: 22 FRSKSYLIIHTRTHTGESGPSS 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TG KP+ C+ C F K L H H
Sbjct: 5 SSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 69.5 bits (171), Expect = 1e-16
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+PY+C+ C K F++ + L H+R+HTGEKP S
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 64.5 bits (158), Expect = 1e-14
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKPY C CG AF+Q THL H +VHTGEKP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQ-----RVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FSQ+ HL H+R+H+GE+P
Sbjct: 22 FSQTTHLIQHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP+ C C FS L +H+ +H
Sbjct: 5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 68.7 bits (169), Expect = 3e-16
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
GE+ ++C C+ F++ S+L H+ +H GEKP S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 59.9 bits (146), Expect = 6e-13
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
GEK ++C C F+QA+ L+ H VH GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQ-----NVHVGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FSQ+ L+ H+ +H GE+P
Sbjct: 22 FSQASSLRLHQNVHVGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
GEK C CD+ FS +L+ H+ +H
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 3e-16
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SG++PY+C+ C KTF + L H+R+HTGE+ S
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 61.0 bits (149), Expect = 2e-13
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+G+KPY C C F Q HL H +VHTGE+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHK-----RVHTGERSSGP 43
Score = 40.6 bits (96), Expect = 9e-06
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F Q HL H+R+H+GER
Sbjct: 22 FIQIGHLNQHKRVHTGERSSGPS 44
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+G+KP+ C C F L +H+ +H
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 68.3 bits (168), Expect = 3e-16
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+G PY+C CEK+F+ L H+R+HT EKP S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 59.5 bits (145), Expect = 9e-13
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
G PY+CS C +F+ L H ++HT EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQ-----RMHTREKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS L H+R+H+ E+P
Sbjct: 22 FSGKLRLLVHQRMHTREKPSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
G P+ C C+ FS K L H+ +H
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 67.6 bits (166), Expect = 8e-16
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNH-RRIHTGEKPYRCS 53
+ +G++PY+C C K F ++++L H R HTGEKP S
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 64.9 bits (159), Expect = 7e-15
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ TG+KPY C CG AF Q T L H + HTGEKP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWR----YYHTGEKPSGP 44
Score = 35.6 bits (83), Expect = 5e-04
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 3 FSQSPHLKNHER-IHSGERPYQC 24
F Q+ L H R H+GE+P
Sbjct: 22 FIQNTSLIRHWRYYHTGEKPSGP 44
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRH-RLIH 105
TG+KP+ C C F +L RH R H
Sbjct: 5 SSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 67.2 bits (165), Expect = 8e-16
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ S + +QC C + F S L H+RIHTGEKP S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 60.6 bits (148), Expect = 3e-13
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ + K ++C CG F +HL H ++HTGEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQ-----RIHTGEKPSGP 43
Score = 36.8 bits (86), Expect = 2e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+ K H C C GF+ K L +H+ IH
Sbjct: 5 SSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 36.8 bits (86), Expect = 2e-04
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F+ HL H+RIH+GE+P
Sbjct: 22 FTLKSHLNQHQRIHTGEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 66.8 bits (164), Expect = 1e-15
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
GE+PY CE+C F TL +H RIHTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 61.4 bits (150), Expect = 2e-13
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPH 83
GEKPY C ICG+ F LK+H ++HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL-----RIHTGSGPS 40
Score = 41.3 bits (98), Expect = 4e-06
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 72 GKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
G GEKP+ C+IC F LK H IH
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 38.6 bits (91), Expect = 4e-05
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 3 FSQSPHLKNHERIHSGERPY 22
F LK+H RIH+G P
Sbjct: 21 FRHLQTLKSHLRIHTGSGPS 40
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 66.8 bits (164), Expect = 1e-15
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC 52
+ SGE+PY+C C K F S L H R H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 61.8 bits (151), Expect = 9e-14
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+ +GEKPY C+ CG AF + L H + H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHE-----RTHAGVSGPSS 43
Score = 36.4 bits (85), Expect = 3e-04
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F L HER H+G
Sbjct: 22 FIWKSLLIVHERTHAGVSGPSS 43
Score = 33.7 bits (78), Expect = 0.003
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP+ C+ C F K L H H
Sbjct: 5 SSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 66.5 bits (163), Expect = 2e-15
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+P+QC+ C F+ +L+ H R H P S
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 56.4 bits (137), Expect = 1e-11
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD 86
TGEKP++C CG F+ + L H + H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL-----RSHERTDPSGPS 44
Score = 36.0 bits (84), Expect = 4e-04
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS S L H R H P
Sbjct: 22 FSWSCSLFKHLRSHERTDPSGP 43
Score = 32.9 bits (76), Expect = 0.005
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP C C + FS +L +H H
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 66.0 bits (162), Expect = 2e-15
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 13 ERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SGE+P+ C CEK F+ S L H++ H EKP S
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 55.6 bits (135), Expect = 2e-11
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GEKP+ CS C AF+ ++L H + H EKP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQ-----QTHAEEKPSGP 41
Score = 38.7 bits (91), Expect = 4e-05
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS +L H++ H+ E+P
Sbjct: 20 FSSKSYLLVHQQTHAEEKPSGP 41
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP C C+ FS K L H+ H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 65.6 bits (161), Expect = 3e-15
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 13 ERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC 52
SGE PY+C C K F R L +H+R H GE
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 60.2 bits (147), Expect = 3e-13
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 41 RRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GE PY CS CG AFN+ L +H + H GE
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQ-----RTHAGESGPSS 41
Score = 40.6 bits (96), Expect = 7e-06
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F++ L +H+R H+GE
Sbjct: 20 FNRKDQLISHQRTHAGESGPSS 41
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GE P+ C C F+ K L H+ H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 65.3 bits (160), Expect = 5e-15
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
GE+PY+C+ C K F++ +L H R+HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 61.0 bits (149), Expect = 2e-13
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPH 83
GEKPYRC CG AF+Q L H +VHTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH-----IRVHTGSGPS 40
Score = 36.4 bits (85), Expect = 2e-04
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
GEKP+ CD C FS K +L H +H
Sbjct: 4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 36.0 bits (84), Expect = 3e-04
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 3 FSQSPHLKNHERIHSGERPY 22
FSQ L H R+H+G P
Sbjct: 21 FSQKGSLIVHIRVHTGSGPS 40
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 65.2 bits (160), Expect = 5e-15
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC 52
+GE PY+C C K F+R L +H++ H+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 58.3 bits (142), Expect = 2e-12
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGE PY C CG F++ L +H K H+G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQ-----KTHSGQSGPSS 43
Score = 38.2 bits (90), Expect = 6e-05
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS+ L +H++ HSG+
Sbjct: 22 FSRKDQLVSHQKTHSGQSGPSS 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGE P+ C C FS K L H+ H
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 65.3 bits (160), Expect = 5e-15
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+GE+P +C C K F S L H+R H +K S
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 58.3 bits (142), Expect = 2e-12
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
TGEKP +C+ CG AF + L H + H +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQ-----RTHVDDKHSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F L H+R H ++
Sbjct: 22 FCWKSQLIMHQRTHVDDKHSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
TGEKP C C F K L H+ H
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 64.9 bits (159), Expect = 6e-15
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
GE+PY+CE C F + + L H IHTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 62.2 bits (152), Expect = 6e-14
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPH 83
GEKPY+C CG+ F Q HL+ H +HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV-----LIHTGSGPS 40
Score = 39.8 bits (94), Expect = 1e-05
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 3 FSQSPHLKNHERIHSGERPY 22
F Q HL+ H IH+G P
Sbjct: 21 FVQVAHLRAHVLIHTGSGPS 40
Score = 38.3 bits (90), Expect = 6e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 72 GKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
G GEKP+ C+ C F L+ H LIH
Sbjct: 1 GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 64.1 bits (157), Expect = 1e-14
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
SGE+ + C+ C K F S L H+R+H GEK S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 54.5 bits (132), Expect = 7e-11
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD 86
+GEK + C CG F + L+ H +VH GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQ-----RVHMGEKCSGPS 44
Score = 38.3 bits (90), Expect = 6e-05
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEK H CD C F AL+ H+ +H
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 32.2 bits (74), Expect = 0.008
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F L+ H+R+H GE+
Sbjct: 22 FCYISALRIHQRVHMGEKCSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 63.1 bits (154), Expect = 3e-14
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 11 NHERIHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCS 53
+ +GE+P+ C C F+R L HRR H+G KP S
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 50.8 bits (122), Expect = 1e-09
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 39 NHRRIHTGEKPYRCS--ICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD 86
+ TGEKP+ C+ CG F+++ L H + H+G KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-----HSGVKPSGPS 46
Score = 35.4 bits (82), Expect = 6e-04
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
FS+S L H R HSG +P
Sbjct: 24 FSRSDELSRHRRSHSGVKPSGPS 46
Score = 33.0 bits (76), Expect = 0.005
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 75 KVHTGEKPHHCD--ICDVGFSDKFALKRHRLIH 105
TGEKP C C FS L RHR H
Sbjct: 5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 60.7 bits (148), Expect = 3e-13
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 13 ERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
SG+R Y+C+ C K+F + +L H RIHTG P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 54.1 bits (131), Expect = 7e-11
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPH 83
+G++ Y C CG +F Q L H ++HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH-----ERIHTGSGPS 39
Score = 37.2 bits (87), Expect = 1e-04
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 3 FSQSPHLKNHERIHSGERPY 22
F Q L HERIH+G P
Sbjct: 20 FRQKGSLTLHERIHTGSGPS 39
Score = 32.9 bits (76), Expect = 0.004
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+G++ + C C F K +L H IH
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 62.1 bits (150), Expect = 5e-13
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 2/99 (2%)
Query: 4 SQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQAT 63
S K + I +G ++C+ C + L H TG + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKRW 60
Query: 64 HLKNHAKVGKC-KVHTGEKPHHCDICDVGFSDKFALKRH 101
+ + +K C C F L H
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 50.1 bits (119), Expect = 1e-08
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 32 ARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVG 91
+ S+ + I TG +RC C +A++ L H TG D
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN------ETGHYRDDNHETDNN 55
Query: 92 FSDKFALKRHRLIHE 106
+++ R R + E
Sbjct: 56 NPKRWSKPRKRSLLE 70
Score = 47.1 bits (111), Expect = 2e-07
Identities = 11/71 (15%), Positives = 17/71 (23%), Gaps = 5/71 (7%)
Query: 3 FSQSPHLKNHERI-----HSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGS 57
+ L H + R +L +K +C CG
Sbjct: 29 YDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGH 88
Query: 58 AFNQATHLKNH 68
+F L H
Sbjct: 89 SFESLQDLSVH 99
Score = 30.9 bits (69), Expect = 0.096
Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 5/102 (4%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTV---NQSHDSQTTPPQSTPTH 131
+ TG C C + L H Y ++ N +S
Sbjct: 12 SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71
Query: 132 SSSQLEE--WKCESSRLIFEAWAKLQKELLSQSGYPYHKLQS 171
+ + KC FE+ L ++ Y S
Sbjct: 72 EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS 113
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 60.5 bits (147), Expect = 7e-13
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 6 SPHLKNHERIHSGERPYQCEV--CEKTFARHSTLWNHRRIHTGEKPYRCSI--CGSAFNQ 61
S + S R + C C KT+ + S L H R HTGEKP+ CS C F +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 62 ATHLKNHAKV 71
+ L H +
Sbjct: 62 SDELSRHRRT 71
Score = 54.3 bits (131), Expect = 1e-10
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 35 STLWNHRRIHTGEKPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI--CDV 90
S + + + + CS CG + +++HLK H + HTGEKP C C+
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-----HTGEKPFSCSWKGCER 57
Query: 91 GFSDKFALKRHRLIH 105
F+ L RHR H
Sbjct: 58 RFARSDELSRHRRTH 72
Score = 53.9 bits (130), Expect = 2e-10
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEV--CEKTFARHSTLWNHRRIH 44
+ +S HLK H R H+GE+P+ C CE+ FAR L HRR H
Sbjct: 29 YFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 60.4 bits (146), Expect = 1e-12
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 14/80 (17%)
Query: 15 IHSGERPYQCEVCEKTFARHSTLWNH-RRIHTGEKPYR--------CSICGSAFNQATHL 65
I + + C++TF+ L H H G C G +F L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 66 KNHAKVGKCKVHTGEKPHHC 85
NH +VHTGEK
Sbjct: 79 VNH-----IRVHTGEKSGPS 93
Score = 49.2 bits (117), Expect = 2e-08
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 3 FSQSPHLKNH-ERIHSGERPYQCEVCE--------KTFARHSTLWNHRRIHTGEKPYRCS 53
FS L H H G VC K+F L NH R+HTGEK S
Sbjct: 35 FSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 44.2 bits (104), Expect = 1e-06
Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 12/71 (16%)
Query: 43 IHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHH--------CDICDVGFSD 94
I + C F+ L H H G + C F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHV----TMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 95 KFALKRHRLIH 105
K+ L H +H
Sbjct: 75 KYKLVNHIRVH 85
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 58.8 bits (143), Expect = 1e-12
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
GE PY C C K+F + +L H+R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 51.9 bits (125), Expect = 5e-10
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPH 83
GE PY C CG +F Q L H + + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQ-----RSCSQSGPS 40
Score = 34.6 bits (80), Expect = 0.001
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 72 GKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
G GE P+ C C F+ + +L H+
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 34.2 bits (79), Expect = 0.002
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 3 FSQSPHLKNHERIHSGERPY 22
F+Q L H+R S P
Sbjct: 21 FTQRGSLAVHQRSCSQSGPS 40
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.7 bits (143), Expect = 2e-12
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC 52
+ + Y C C K F R L H++IHT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 56.8 bits (138), Expect = 9e-12
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
T K Y C+ CG AF + HL H K+HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQ-----KIHTRKSGPSS 43
Score = 37.2 bits (87), Expect = 1e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
T K ++C+ C F+ F L RH+ IH
Sbjct: 5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 31.4 bits (72), Expect = 0.019
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
F++ HL H++IH+ +
Sbjct: 22 FTRIFHLTRHQKIHTRKSGPSS 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 55.0 bits (133), Expect = 4e-11
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 14 RIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRC 52
SGE+PY C C++TF+ ++ L H+++HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 48.9 bits (117), Expect = 8e-09
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHC 85
+GEKPY C+ C F+ L H K+HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQ-----KMHTVKSGPSS 41
Score = 35.0 bits (81), Expect = 7e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+GEKP+ C C FSD L +H+ +H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 31.9 bits (73), Expect = 0.012
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 3 FSQSPHLKNHERIHSGERPYQC 24
FS + L H+++H+ +
Sbjct: 20 FSDNNRLVQHQKMHTVKSGPSS 41
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 53.2 bits (127), Expect = 3e-10
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
Y CE C + S L H R HT +PY C+ C +F +L H K K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM-----KSKAHSK 56
Score = 49.7 bits (118), Expect = 5e-09
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 4 SQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
+ LK H R H+ RPY C C +F L H + K
Sbjct: 12 KKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 42.8 bits (100), Expect = 2e-06
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 50 YRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
Y C CG + + LK H + HT +P+HC C+ F K L +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-----HTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 49.9 bits (119), Expect = 3e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 14 RIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSIC 55
+ CE+C K F L H+ H+GEKPY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 43.8 bits (103), Expect = 7e-07
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDIC 88
K C ICG F HL H H+GEKP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHK-----LSHSGEKPYSSGPS 46
Score = 37.6 bits (87), Expect = 1e-04
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVC 27
F HL H+ HSGE+PY
Sbjct: 22 FRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 36.1 bits (83), Expect = 4e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
K C+IC F D + L RH+L H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 49.1 bits (117), Expect = 6e-09
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 11 NHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKP 49
+ +GE P++C C++ F + + L H R H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 43.3 bits (102), Expect = 1e-06
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPH 83
+ GE P++CS C F Q +L H + H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE-----RTHARKSGP 41
Score = 32.9 bits (75), Expect = 0.005
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
GE P C CD F+ + L +H H
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 27.9 bits (62), Expect = 0.37
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 3 FSQSPHLKNHERIHSGERP 21
F+Q +L HER H+ +
Sbjct: 22 FTQRNYLVQHERTHARKSG 40
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 49.3 bits (117), Expect = 1e-08
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 32 ARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVG 91
+ ++IH G++ +CS CG F + + + K C+ C
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST------------LSRRKTPMCEKCRKD 48
Query: 92 FSDKFALKRHRLIH 105
+ AL +
Sbjct: 49 SCQEAALNKDEGNE 62
Score = 41.6 bits (97), Expect = 7e-06
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
S + CE C K + + L +G+K
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 24.6 bits (53), Expect = 8.4
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 3 FSQSPHLKNHERIHSGERPY 22
Q L E SG++
Sbjct: 49 SCQEAALNKDEGNESGKKTS 68
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 45.8 bits (109), Expect = 1e-07
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
R +G +P+QC C+++F+R L HR+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 44.6 bits (106), Expect = 2e-07
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAK 70
R TG KP++C C +F+++ HL H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 33.5 bits (77), Expect = 0.003
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 72 GKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
G + TG KP C CD FS L HR H
Sbjct: 1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 45.7 bits (107), Expect = 6e-07
Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 6/77 (7%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
+ C +C F+ +L H R E C +C F
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTST 113
Query: 63 THLKNHAKVGKCKVHTG 79
+H CK H
Sbjct: 114 DSALDHV----CKKHNI 126
Score = 40.7 bits (94), Expect = 5e-05
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 11/98 (11%)
Query: 8 HLKNHERIHSGERPYQCEV----CEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQAT 63
+ H+ +R + V S+ + C +C F+ +
Sbjct: 29 LKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSV 88
Query: 64 HLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRH 101
LK H + E C +C F+ + H
Sbjct: 89 SLKQH-------IRYTEHTKVCPVCKKEFTSTDSALDH 119
Score = 28.4 bits (62), Expect = 0.93
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 15 IHSGERPYQC--EVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVG 72
+ SG + Y + H+ ++ R + N L + +
Sbjct: 6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHN-PQLLDESSYLY 64
Query: 73 KCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEK 107
+ C +C + FS +LK+H E
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH 99
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 43.0 bits (100), Expect = 5e-06
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 10 KNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHA 69
+ + YQC +C + +H R+ C C F + H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH- 61
Query: 70 KVGKCKVHTGEKPHHCDICDVGFSDKFALKRHR 102
+ K C C F F++ RH+
Sbjct: 62 -----ESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 37.6 bits (86), Expect = 5e-04
Identities = 13/66 (19%), Positives = 17/66 (25%), Gaps = 3/66 (4%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQA 62
S +HER+ C C F H K C C F +
Sbjct: 26 LSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSS 82
Query: 63 THLKNH 68
+ H
Sbjct: 83 FSIWRH 88
Score = 29.5 bits (65), Expect = 0.26
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 6 SPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHR 41
SP LK + C C +TF ++W H+
Sbjct: 54 SPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 38.4 bits (90), Expect = 4e-05
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 20 RPYQC--EVCEKTFARHSTLWNHRRIHTGEK 48
RP+ C C K F R L H+R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.6 bits (57), Expect = 1.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 3 FSQSPHLKNHERIHSGER 20
F++S L+ H+R H+GE+
Sbjct: 14 FTRSDELQRHKRTHTGEK 31
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 37.7 bits (88), Expect = 8e-05
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
R + CEVC + FAR L H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.4 bits (69), Expect = 0.030
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
+ + C +C AF + HLK H + HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY-----RSHTNEK 29
Score = 25.7 bits (57), Expect = 1.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 3 FSQSPHLKNHERIHSGER 20
F++ HLK H R H+ E+
Sbjct: 12 FARQEHLKRHYRSHTNEK 29
Score = 25.0 bits (55), Expect = 2.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 81 KPHHCDICDVGFSDKFALKRHRLIH 105
+ C++C F+ + LKRH H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 34.3 bits (78), Expect = 0.001
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
+PY C C++ FA L H RIHTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.5 bits (55), Expect = 2.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 81 KPHHCDICDVGFSDKFALKRHRLIH 105
KP+ C C F+D AL+RH IH
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 34.9 bits (79), Expect = 0.001
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHTG 46
SGE+PY C VC F R + H R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 30.3 bits (67), Expect = 0.052
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 44 HTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKP 82
+GEKPY C +CG F + + H + V
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
Score = 27.6 bits (60), Expect = 0.47
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNS 112
+GEKP+ C +C + F K + H H+ S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 33.9 bits (78), Expect = 0.002
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 17 SGERPYQCEV--CEKTFARHSTLWNHRRIHTGEK 48
++ + C + C K + + S L H R HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 29.6 bits (67), Expect = 0.075
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 45 TGEKPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEK 81
+K + C I CG + + +HL+ H + HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHL-----RWHTGER 37
Score = 28.5 bits (64), Expect = 0.17
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 3 FSQSPHLKNHERIHSGER 20
+ ++ HL+ H R H+GER
Sbjct: 20 YGKTSHLRAHLRWHTGER 37
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 36.8 bits (84), Expect = 0.004
Identities = 11/43 (25%), Positives = 13/43 (30%)
Query: 2 LFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
+ S+ P S YQC VC L H H
Sbjct: 161 IVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.8 bits (79), Expect = 0.015
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 57 SAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIHEKYAR----NS 112
+ A K+ A+VG + + C +C L H H + +S
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSS 214
Query: 113 TVNQSHDSQTTPPQSTPTHSSS 134
+ + + Q+ P S
Sbjct: 215 EIQRHITEFISSWQNHPIVQVS 236
Score = 34.4 bits (78), Expect = 0.022
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 23 QCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNH 68
E ++H + Y+C +C + L H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH 199
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (75), Expect = 0.004
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHT 45
E+ ++C CEKTF+ L H RIHT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.9 bits (56), Expect = 1.6
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 44 HTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
EK ++C+ C F+ + +L H ++ V +G
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSG 42
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 32.0 bits (72), Expect = 0.008
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHT 45
SG+RP+ C +C F + H ++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.7 bits (66), Expect = 0.057
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 44 HTGEKPYRCSICGSAFNQATHLKNHAKV 71
+G++P+ C IC SAF + H KV
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
Score = 28.2 bits (62), Expect = 0.21
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+G++P C IC F+ K RH +H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.0 bits (69), Expect = 0.022
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEK 48
+ CE C K F +L H RIHT EK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.023
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
S E+ +QC C + F ++ +L H+ +H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 24.8 bits (53), Expect = 4.8
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
+ EK ++C CG F Q L H +H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQ-----VLHMGQK 39
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 30.1 bits (67), Expect = 0.044
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
+P QC +C K F + S+L H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.2 bits (62), Expect = 0.22
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
KP +C +CG AF QA+ L H + HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHV-----RQHTGEK 29
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 30.3 bits (67), Expect = 0.054
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
+ + +C+ C K F S L H+ +H GE
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.7 bits (71), Expect = 0.12
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 14 RIHSGE--RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAK 70
I GE R + E K S HR + GEK + + L+
Sbjct: 171 DIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 30.9 bits (69), Expect = 0.23
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 6 SPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
H + GE+ Q E E+ L + +
Sbjct: 193 MSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 28.2 bits (62), Expect = 0.16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTG 46
RPY C VC K F+ + H R+HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 28.4 bits (63), Expect = 0.17
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 19 ERPYQCEV--CEKTFARHSTLWNHRRIHT 45
+RPY C+ C+K F R+ L H++ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 23.8 bits (51), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 80 EKPHHCDI--CDVGFSDKFALKRHRLIHEK 107
++P+ CD CD F L RH+ H++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.21
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
+PY+C C A + L H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.7 bits (66), Expect = 0.22
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 8/100 (8%)
Query: 34 HSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG---EKPHHCDICDV 90
H ++++ E Y C C H H + C C+
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVD----SEHPNVVLNSSYVCVECNF 58
Query: 91 GFSDKFALKRHRLIHEKYARNSTVNQS-HDSQTTPPQSTP 129
AL H L + N + ++QT Q+
Sbjct: 59 LTKRYDALSEHNLKYHPGEENFKLTMVKRNNQTIFEQTIN 98
Score = 26.3 bits (57), Expect = 3.7
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 22 YQCEVCEKTFARHSTLWNH-RRIHTGEKPYRCSI 54
Y C C R+ L H + H GE+ ++ ++
Sbjct: 51 YVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.2 bits (62), Expect = 0.23
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 80 EKPHHCDICDVGFSDKFALKRHRLIH 105
K H CD+C F K LK H+L+H
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLH 32
Score = 25.6 bits (55), Expect = 2.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 17 SGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
S + + C++C K F TL +H+ +HT +
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 27.5 bits (61), Expect = 0.35
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 20 RPYQCEVCEKTFARHSTLWNH-RRIHTG 46
+ Y C +C + F R L H ++IH+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.0 bits (52), Expect = 5.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
K Y C +C AF + L HA+ K+H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQ----KIHSG 28
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.8 bits (63), Expect = 0.64
Identities = 13/82 (15%), Positives = 24/82 (29%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
QC+VC S H + R + + + K
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 80 EKPHHCDICDVGFSDKFALKRH 101
++ C +C++ FS + H
Sbjct: 91 DRSKCCPVCNMTFSSPVVAESH 112
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 26.3 bits (57), Expect = 0.86
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 22 YQCEVCEKTFARHSTLWNHRRIH 44
Y+C +CE++F S L H+R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 320
Score = 28.5 bits (63), Expect = 1.5
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 14/53 (26%)
Query: 39 NHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVG 91
++R I+ G+ +C + G+ ++ K CKV + ++G
Sbjct: 268 SYRPIYRGKPVEKCPLSGACYSPE------FKGQICKV--------TTVTEIG 306
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 26.0 bits (57), Expect = 1.5
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 19 ERPYQCEV--CEKTFARHSTLWNHRRIHTGEK 48
++ ++C C KTF R + +H + H ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 26.7 bits (58), Expect = 1.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 50 YRCSICGSAFNQATHLKNH 68
C +CG F A L+ H
Sbjct: 14 LPCGLCGKVFTDANRLRQH 32
>2gm5_A Transposon gamma-delta resolvase; site specific recombination,
recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A
1ght_A 1hx7_A
Length = 139
Score = 27.5 bits (62), Expect = 1.7
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 108 YARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFE 149
YAR ST QS D Q L++ +++R IF
Sbjct: 5 YARVSTSQQSLDIQV-----------RALKDAGVKANR-IFT 34
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 28.2 bits (62), Expect = 1.7
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 13/49 (26%)
Query: 8 HLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICG 56
N ++ + C +C + IH GE +C IC
Sbjct: 158 AAYNDIDAPDDDKFHLCPIC-----------GY--IHKGEDFEKCPICF 193
Score = 27.0 bits (59), Expect = 3.6
Identities = 15/75 (20%), Positives = 20/75 (26%), Gaps = 19/75 (25%)
Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
R+ +N +K + C ICG +H GE
Sbjct: 144 RAKLAESVHAERYLAAYNDIDAPDDDKFHLCPICGY------------------IHKGED 185
Query: 82 PHHCDICDVGFSDKF 96
C IC D F
Sbjct: 186 FEKCPICFRP-KDTF 199
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex,
double helix, overhanging base, DNA binding protein/DNA
complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1
PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Length = 183
Score = 27.5 bits (62), Expect = 2.1
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 108 YARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFE 149
YAR ST QS D Q L++ +++R IF
Sbjct: 6 YARVSTSQQSLDIQV-----------RALKDAGVKANR-IFT 35
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 25.0 bits (54), Expect = 2.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIH 44
+PY CE C K F + S L NH R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 24.7 bits (53), Expect = 3.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 48 KPYRCSICGSAFNQATHLKNHAK 70
KPY C CG F Q++ L NH +
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIR 23
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 2.7
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 21/75 (28%)
Query: 97 ALKRHRLIHEKYARNSTVNQSH--DSQTTP-------PQSTPTHSSSQLEEWKCESSRLI 147
+L L K S ++QS S+ P ++P HS L+
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH------------LL 432
Query: 148 FEAWAKLQKELLSQS 162
A + K+L+ +
Sbjct: 433 VPASDLINKDLVKNN 447
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 25.7 bits (56), Expect = 3.2
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 6 SPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAF---NQA 62
S HE R C+ C+ L H + G + C CG +
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHED-YCGARTELCGNCGRNVLVKDLK 59
Query: 63 THLKNHAKVGK 73
TH + + G
Sbjct: 60 THPEVCGREGS 70
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.5 bits (53), Expect = 3.8
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEKPYR 51
+ C C K F R L H +H R
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.1 bits (52), Expect = 5.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEK 48
+ C C K F R L H +H +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_A
Length = 325
Score = 26.6 bits (58), Expect = 5.9
Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 14/52 (26%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVG 91
++ I+ + GS + K ++ I +G
Sbjct: 278 YKPIYEDTPSVSDPLTGSKYVIT------EKDKIDRI--------AMISKIG 315
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 23.9 bits (52), Expect = 6.7
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
R Y C C++ F L H +H ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase,
recombination; 3.80A {Enterobacteria phage MU}
Length = 193
Score = 25.6 bits (57), Expect = 9.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 108 YARNSTVNQSHDSQ 121
Y R +T +Q+ D Q
Sbjct: 5 YVRVATNDQNTDLQ 18
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 26.1 bits (58), Expect = 9.4
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 11/55 (20%)
Query: 12 HER------IH---SGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGS 57
HE I + C C K + + + P C CG
Sbjct: 137 HEASGNTKVISLHGNVFEAV-CCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGG 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.129 0.418
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,935,727
Number of extensions: 149785
Number of successful extensions: 1397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 993
Number of HSP's successfully gapped: 616
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.6 bits)