RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2103
(203 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 56.2 bits (136), Expect = 4e-12
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 17 SGERPYQCEVCEKTFARHSTLWNH-RRIHTGEKPYRCSI 54
S +PY C+ C K F+R L H +++HT E+P++C +
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 51.1 bits (123), Expect = 3e-10
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 45 TGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDI 87
+ KPY C CG F++ HL H K +VHT E+PH C +
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIK----QVHTSERPHKCQV 39
Score = 37.3 bits (87), Expect = 5e-05
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 3 FSQSPHLKNHER-IHSGERPYQCEV 26
FS+ HL H + +H+ ERP++C+V
Sbjct: 15 FSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 31.5 bits (72), Expect = 0.006
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 78 TGEKPHHCDICDVGFSDKFALKRH-RLIH 105
+ KP+ C C GFS L H + +H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 55.3 bits (134), Expect = 9e-12
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 15 IHSGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
IHSGE+PY C C K F+R S L H+R+HTGE
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 48.0 bits (115), Expect = 5e-09
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 43 IHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
IH+GEKPY C CG AF++++ L H +VHTGE
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQH-----QRVHTGE 33
Score = 41.8 bits (99), Expect = 1e-06
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 76 VHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+H+GEKP+ C C FS L +H+ +H
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 29.5 bits (67), Expect = 0.026
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 3 FSQSPHLKNHERIHSGE 19
FS+S L H+R+H+GE
Sbjct: 17 FSRSSILVQHQRVHTGE 33
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 51.6 bits (124), Expect = 2e-10
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 14 RIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
R H+GE+PY C C+KTF + L H + +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 45.0 bits (107), Expect = 7e-08
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
R HTGEKPY CS C F Q L H K +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMH-----FKRYHDPN 35
Score = 40.0 bits (94), Expect = 4e-06
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+ HTGEKP+ C CD F K L H +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 25.8 bits (57), Expect = 0.48
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 3 FSQSPHLKNHERIHSGE 19
F Q L H + +
Sbjct: 18 FRQKQLLDMHFKRYHDP 34
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 51.7 bits (124), Expect = 3e-10
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
E R Y+C+ C K+F+ S L HRR HTGE
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 44.8 bits (106), Expect = 8e-08
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
+ Y+C CG +F+ ++ L H + HTGE
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKH-----RRTHTGE 38
Score = 36.7 bits (85), Expect = 8e-05
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+ + CD C FS L +HR H
Sbjct: 5 WQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 27.0 bits (60), Expect = 0.19
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 3 FSQSPHLKNHERIHSGE 19
FS S L H R H+GE
Sbjct: 22 FSHSSDLSKHRRTHTGE 38
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 48.6 bits (116), Expect = 3e-09
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 12 HERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTG 46
R +G +P+QC C+++F+R L HR+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 43.6 bits (103), Expect = 2e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 40 HRRIHTGEKPYRCSICGSAFNQATHLKNHAKV 71
R TG KP++C C +F+++ HL H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 37.4 bits (87), Expect = 4e-05
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 72 GKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
G + TG KP C CD FS L HR H
Sbjct: 1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 23.5 bits (51), Expect = 4.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 3 FSQSPHLKNHERIH 16
FS+S HL H + H
Sbjct: 21 FSRSDHLALHRKRH 34
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 48.1 bits (115), Expect = 5e-09
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 14 RIHSGERPYQCEVCEKTFARHSTLWNH-RRIHTGE 47
R HSGE+PY+C +C F + T+ H + HT
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 47.3 bits (113), Expect = 9e-09
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 42 RIHTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
R H+GEKPY C IC + F Q+ +K H + HT
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMH----ILQKHTEN 35
Score = 39.2 bits (92), Expect = 8e-06
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 75 KVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+ H+GEKP+ C IC F+ +K H L
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 46.8 bits (112), Expect = 1e-08
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
R + CEVC + FAR L H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 38.4 bits (90), Expect = 1e-05
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
+ + C +C AF + HLK H + HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-----YRSHTNEK 29
Score = 30.3 bits (69), Expect = 0.011
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 3 FSQSPHLKNHERIHSGER 20
F++ HLK H R H+ E+
Sbjct: 12 FARQEHLKRHYRSHTNEK 29
Score = 29.5 bits (67), Expect = 0.021
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 81 KPHHCDICDVGFSDKFALKRHRLIH 105
+ C++C F+ + LKRH H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.5 bits (108), Expect = 4e-08
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 22 YQCE--VCEKTFARHSTLWNHRRIHTGEKPYRC 52
+ C C K+F L H ++H+ + Y C
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 39.3 bits (92), Expect = 7e-06
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 3 FSQSPHLKNHERIHSGERPYQCE 25
F+ HLK H ++HS R Y CE
Sbjct: 13 FNFKKHLKEHMKLHSDTRDYICE 35
Score = 35.5 bits (82), Expect = 2e-04
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 50 YRCS--ICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCD 86
+ C CG +FN HLK H K+H+ + + C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEH-----MKLHSDTRDYICE 35
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 45.8 bits (108), Expect = 4e-08
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSICGSAFNQATHLKNHAKV 71
++ Y C+ C K+F S H +H G +PY C +CG F HL H K+
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 40.1 bits (93), Expect = 7e-06
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 3 FSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIH 44
F+ H +H G RPY C VC K F L H +IH
Sbjct: 12 FTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 38.5 bits (89), Expect = 2e-05
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+K Y C CG +F + H +H G +P+ C +C F K L H IH
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRH-----MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 44.9 bits (107), Expect = 5e-08
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTG 46
++P+QC +C + F+R L H R HTG
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 36.4 bits (85), Expect = 7e-05
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTG 79
+KP++C IC F+++ HL H + HTG
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTH-----IRTHTG 28
Score = 31.4 bits (72), Expect = 0.004
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 80 EKPHHCDICDVGFSDKFALKRHRLIH 105
+KP C IC FS L H H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 27.2 bits (61), Expect = 0.14
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 3 FSQSPHLKNHERIHSG 18
FS+S HL H R H+G
Sbjct: 13 FSRSDHLTTHIRTHTG 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 43.9 bits (104), Expect = 2e-07
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
+ + C C K F R L H + H +K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 35.8 bits (83), Expect = 1e-04
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEK 81
K + C C F ++ HL H K H +K
Sbjct: 1 KKFACPECPKRFMRSDHLSKH-----IKTHQNKK 29
Score = 28.8 bits (65), Expect = 0.033
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 3 FSQSPHLKNHERIHSGER 20
F +S HL H + H ++
Sbjct: 12 FMRSDHLSKHIKTHQNKK 29
Score = 28.8 bits (65), Expect = 0.042
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 81 KPHHCDICDVGFSDKFALKRHRLIH 105
K C C F L +H H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 43.2 bits (102), Expect = 3e-07
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 16 HSGERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
SG+RP+ C +C F + H ++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 37.4 bits (87), Expect = 4e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 77 HTGEKPHHCDICDVGFSDKFALKRHRLIH 105
+G++P C IC F+ K RH +H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 36.7 bits (85), Expect = 7e-05
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 44 HTGEKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGE 80
+G++P+ C IC SAF + H KVHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH-----LKVHTDT 33
Score = 25.9 bits (57), Expect = 0.54
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 3 FSQSPHLKNHERIHSGE 19
F+ + H ++H+
Sbjct: 17 FTTKANCARHLKVHTDT 33
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 41.5 bits (98), Expect = 1e-06
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 20 RPYQCEV--CEKTFARHSTLWNHRRIHTGEK 48
RP+ C C K F R L H+R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 33.8 bits (78), Expect = 6e-04
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 48 KPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGEK 81
+P+ C+ CG F ++ L+ H + HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRH-----KRTHTGEK 31
Score = 30.4 bits (69), Expect = 0.011
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 3 FSQSPHLKNHERIHSGER 20
F++S L+ H+R H+GE+
Sbjct: 14 FTRSDELQRHKRTHTGEK 31
Score = 25.4 bits (56), Expect = 0.72
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 81 KPHHCDI--CDVGFSDKFALKRHRLIH 105
+P C C F+ L+RH+ H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 41.8 bits (98), Expect = 1e-06
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 11 NHERIHSGERPYQCEVCE--KTFARHSTLWNHRRIHTGEK 48
+ ++ ++C KTF R + +H + H ++
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 33.8 bits (77), Expect = 9e-04
Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 39 NHRRIHTGEKPYRCSIC--GSAFNQATHLKNHAKVGKCKVHTGEK 81
+ +K + C F + ++++H + H ++
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSH-----IQTHLEDR 47
Score = 30.3 bits (68), Expect = 0.017
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 77 HTGEKPHHCDICDVG--FSDKFALKRHRLIH 105
+K C F ++ ++ H H
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 24.9 bits (54), Expect = 1.3
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 3 FSQSPHLKNHERIHSGER 20
F + ++++H + H +R
Sbjct: 30 FKRRYNIRSHIQTHLEDR 47
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 39.6 bits (93), Expect = 5e-06
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 20 RPYQC--EVCEKTFARHSTLWNHRRIHTGE 47
+P++C E C K+++R L H R HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 32.3 bits (74), Expect = 0.002
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 48 KPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGE 80
KP++C+ C ++++ +LK H + HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTH-----LRSHTGE 30
Score = 30.0 bits (68), Expect = 0.016
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 3 FSQSPHLKNHERIHSGE 19
+S+ +LK H R H+GE
Sbjct: 14 YSRLENLKTHLRSHTGE 30
Score = 25.4 bits (56), Expect = 0.60
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 81 KPHHCDICDVG--FSDKFALKRHRLIH 105
KPH C +S LK H H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 39.1 bits (92), Expect = 9e-06
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHT 45
+PY+C C K F+++S L NH+RIHT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 30.6 bits (70), Expect = 0.009
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 48 KPYRCSICGSAFNQATHLKNH 68
KPY+C CG AF+Q + L NH
Sbjct: 1 KPYKCLECGKAFSQNSGLINH 21
Score = 26.0 bits (58), Expect = 0.39
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 81 KPHHCDICDVGFSDKFALKRHRLIH 105
KP+ C C FS L H+ IH
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
Score = 24.1 bits (53), Expect = 1.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 3 FSQSPHLKNHERIHS 17
FSQ+ L NH+RIH+
Sbjct: 12 FSQNSGLINHQRIHT 26
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 37.3 bits (87), Expect = 4e-05
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 20 RPYQC--EVCEKTFARHSTLWNHRRIHTG 46
RPY C E C++ F+R + L H RIHTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 29.2 bits (66), Expect = 0.029
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 48 KPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTG 79
+PY C + C F+++ L H ++HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHI-----RIHTG 29
Score = 27.7 bits (62), Expect = 0.10
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 3 FSQSPHLKNHERIHSG 18
FS+S L H RIH+G
Sbjct: 14 FSRSADLTRHIRIHTG 29
Score = 24.6 bits (54), Expect = 1.2
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 81 KPHHCDICDVG--FSDKFALKRHRLIH 105
+P+ C + FS L RH IH
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 37.0 bits (86), Expect = 5e-05
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 20 RPYQCEV--CEKTFARHSTLWNHRRIHTGE 47
+P+QC C K F+ L H RIHTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 30.4 bits (69), Expect = 0.010
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 48 KPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGE 80
KP++C+ CG F+ +L+ H ++HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTH-----VRIHTGD 30
Score = 27.7 bits (62), Expect = 0.11
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 3 FSQSPHLKNHERIHSGE 19
FS +L+ H RIH+G+
Sbjct: 14 FSLDFNLRTHVRIHTGD 30
Score = 23.5 bits (51), Expect = 3.1
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 81 KPHHCDICDVG--FSDKFALKRHRLIH 105
KP C G FS F L+ H IH
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 36.9 bits (86), Expect = 5e-05
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 19 ERPYQCEV--CEKTFARHSTLWNHRRIHTGE 47
+RPY C+ C+K F R+ L H++ H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 30.4 bits (69), Expect = 0.010
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 47 EKPYRCSI--CGSAFNQATHLKNHAKVGKCKVHTGE 80
++PY C C AF + L H K H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHK-----KSHQEK 31
Score = 27.7 bits (62), Expect = 0.12
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 80 EKPHHCDI--CDVGFSDKFALKRHRLIHEK 107
++P+ CD CD F L RH+ H++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 26.5 bits (59), Expect = 0.25
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 3 FSQSPHLKNHERIHSGE 19
F ++ L H++ H +
Sbjct: 15 FVRNHDLIRHKKSHQEK 31
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 31.2 bits (71), Expect = 0.006
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 20 RPYQCEV--CEKTFARHSTLWNHRRIHT 45
RPY C C K FA+ + L +H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 25.8 bits (57), Expect = 0.46
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 48 KPYRCSI--CGSAFNQATHLKNHAKV 71
+PY C C F Q+T+LK+H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILT 26
Score = 23.8 bits (52), Expect = 2.0
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 81 KPHHCDI--CDVGFSDKFALKRHRLIH 105
+P+ C C+ F+ LK H L H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
Score = 23.8 bits (52), Expect = 2.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 3 FSQSPHLKNHERIHS 17
F+QS +LK+H H+
Sbjct: 14 FAQSTNLKSHILTHA 28
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 30.6 bits (69), Expect = 0.009
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIH 44
E+P+ C++C + FAR H +IH
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
Score = 27.1 bits (60), Expect = 0.14
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 47 EKPYRCSICGSAFNQATHLKNHAKV 71
EKP+ C ICG F ++ K H K+
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKI 25
Score = 26.7 bits (59), Expect = 0.22
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 80 EKPHHCDICDVGFSDKFALKRHRLIHEK 107
EKP CDIC F+ KRH IH +
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHLR 28
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 28.5 bits (63), Expect = 0.046
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 21 PYQCEVCEKTFARHSTLWNHRRIHTG 46
P++CEVC K F+R L H R HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
Score = 23.9 bits (51), Expect = 2.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 82 PHHCDICDVGFSDKFALKRHRLIH 105
PH C++C FS K LK H H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 27.3 bits (60), Expect = 0.16
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEKPY 50
+ CE+C K F L H+ H+GEKPY
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 26.9 bits (59), Expect = 0.21
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 81 KPHHCDICDVGFSDKFALKRHRLIH 105
K C+IC F D + L RH+L H
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSH 28
Score = 24.6 bits (53), Expect = 1.3
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 48 KPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPH 83
K C ICG F HL H H+GEKP+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHK-----LSHSGEKPY 34
Score = 23.1 bits (49), Expect = 5.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 3 FSQSPHLKNHERIHSGERPY 22
F HL H+ HSGE+PY
Sbjct: 15 FRDVYHLNRHKLSHSGEKPY 34
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 26.9 bits (59), Expect = 0.19
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTG 46
E+PY C VC F R + H R H G
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 28
Score = 23.1 bits (49), Expect = 4.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVH 77
EKPY C +CG F + + H + V
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 31
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 27.0 bits (60), Expect = 0.21
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGEK 48
R Y C C++ F L H +H ++
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDR 32
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 27.3 bits (60), Expect = 0.21
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 50 YRCSICGSAFNQATHLKNH 68
C +CG F A L+ H
Sbjct: 7 LPCGLCGKVFTDANRLRQH 25
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 26.2 bits (57), Expect = 0.36
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
ERP++C++C S L H R HTG+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTGD 29
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 26.3 bits (58), Expect = 0.37
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 21 PYQCEVCEKTFARHSTLWNH-RRIHTG 46
PY C +C + F R L H ++IH+G
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIHSG 27
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.9 bits (56), Expect = 0.44
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 81 KPHHCDICDVGFSDKFALKRHRLIH 105
KP+ C CD +D +L +H IH
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIH 26
Score = 24.7 bits (53), Expect = 1.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHT 45
+PY+C+ C+ A S+L H RIH+
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 25.9 bits (56), Expect = 0.50
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 22 YQCEVCEKTFARHSTLWNHRRIH 44
Y+C +CE++F S L H+R+H
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVH 23
Score = 22.4 bits (47), Expect = 7.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 83 HHCDICDVGFSDKFALKRHRLIHE 106
+ C +C+ F +K AL RH+ +H+
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVHK 24
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 25.5 bits (55), Expect = 0.62
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 19 ERPYQCEVCEKTFARHSTLWNHRRIHTGE 47
E+ + C VC++TF R L H HTGE
Sbjct: 2 EQVFTCSVCQETFRRRMELRLHMVSHTGE 30
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 25.0 bits (54), Expect = 0.80
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 23 QCEVCEKTFARHSTLWNHRRIHTGEK 48
+C C K F L H R HTGEK
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.0 bits (54), Expect = 1.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 20 RPYQCEVCEKTFARHSTLWNHRRIHTGE 47
R + C C K F S L H+ +HTGE
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVHTGE 28
Score = 23.8 bits (51), Expect = 2.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 52 CSICGSAFNQATHLKNHAKVGKCKVHTGE 80
C+ CG AF +++ LK H VHTGE
Sbjct: 5 CAECGKAFVESSKLKRHQ-----LVHTGE 28
Score = 22.7 bits (48), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 83 HHCDICDVGFSDKFALKRHRLIH 105
H C C F + LKRH+L+H
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVH 25
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 36
Score = 24.3 bits (53), Expect = 1.9
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 19/50 (38%)
Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKF 96
+K + C ICG +H GE C IC D F
Sbjct: 3 DKFHLCPICGY------------------IHKGEDFEKCPICFRP-KDTF 33
Score = 23.5 bits (51), Expect = 3.7
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 43 IHTGEKPYRCSICG 56
IH GE +C IC
Sbjct: 14 IHKGEDFEKCPICF 27
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 23.9 bits (52), Expect = 2.8
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 43 IHTGEKPYRCSICG 56
E P C +CG
Sbjct: 14 TAVDEAPEYCPVCG 27
Score = 23.9 bits (52), Expect = 3.1
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 19/50 (38%)
Query: 47 EKPYRCSICGSAFNQATHLKNHAKVGKCKVHTGEKPHHCDICDVGFSDKF 96
+K Y C ICG E P +C +C +KF
Sbjct: 3 KKVYICPICGY------------------TAVDEAPEYCPVCGAP-KEKF 33
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 23.9 bits (51), Expect = 3.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 78 TGEKPHHCDICDVGFSDKFALKRHRLIHEKYARNSTVNQS 117
TG KP+ C+IC F + + RH K + Q+
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQN 40
Score = 23.9 bits (51), Expect = 3.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 45 TGEKPYRCSICGSAF 59
TG KPY C+IC F
Sbjct: 1 TGIKPYECNICAKRF 15
>d1igna2 a.4.1.6 (A:446-594) DNA-binding domain of rap1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 149
Score = 25.2 bits (55), Expect = 4.6
Identities = 6/81 (7%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 100 RHRLIHEKYARNSTVNQSHDSQTTPPQSTPTHSSSQLEEWKCESSRLIFEAWAKLQKELL 159
+ + + + + +S + P + + + S + ++ +
Sbjct: 17 KKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPI 76
Query: 160 SQS-------GYPYHKLQSWR 173
++ + H +WR
Sbjct: 77 AREFFKHFAEEHAAHTENAWR 97
>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 194
Score = 25.3 bits (54), Expect = 5.3
Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 1/103 (0%)
Query: 34 HSTLWNHRRIHTGEKPYRCSICGSAFNQAT-HLKNHAKVGKCKVHTGEKPHHCDICDVGF 92
H+ L + + P GS +A +VG V + C C+ G
Sbjct: 42 HTDLIVRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGN 101
Query: 93 SDKFALKRHRLIHEKYARNSTVNQSHDSQTTPPQSTPTHSSSQ 135
+ R + + +HD S +
Sbjct: 102 PAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFAT 144
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 53
Score = 23.5 bits (51), Expect = 5.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 14 RIHSGERPYQCEVCEKTFARHSTLWN 39
R + + +C+ CEK F+ + L N
Sbjct: 28 RKRANDIALKCKYCEKEFSHNVVLAN 53
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 98
Score = 24.1 bits (52), Expect = 6.0
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 5 QSPHLKNHERIHSGERPYQCEV---------CEKTFARHSTLWNHRRIH 44
H+K HE I+ R Y + EKTF R ++ R I+
Sbjct: 27 YHSHVKGHEYIYDRLRIYDYRIETFEIINDYLEKTFGRKYSIQKDRNIY 75
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.5 bits (48), Expect = 6.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 22 YQCEVCEKTFARHSTLWNHRRIHTGEK 48
Y CE C + S L H R HT +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 24.8 bits (54), Expect = 7.5
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 22 YQCEVCEKTFARHSTLWNHR-----RIHTGEKPYRCS 53
+ CE C K + H R G++ YR S
Sbjct: 32 WLCEYCLKYMKYEKSYRFHLGQCQWRQPPGKEIYRKS 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.129 0.418
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 750,924
Number of extensions: 31964
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 152
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)