BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2106
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RON|A Chain A, The External Thioesterase Of The Surfactin-Synthetase
pdb|2K2Q|B Chain B, Complex Structure Of The External Thioesterase Of The
Surfactin-Synthetase With A Carrier Domain
Length = 242
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 123 ATFMDLSARLK--CNVLLYDYSGYGSSTGRASEANLYWDIEAVYHTLRLKYNINCDQ-II 179
A+F L A L+ C +L + G+G++ A E D+E + + + N+ D+ +
Sbjct: 27 ASFRPLHAFLQGECEMLAAEPPGHGTNQTSAIE-----DLEELTDLYKQELNLRPDRPFV 81
Query: 180 LYGQSIGSVPTVYLASRVNVAGVILHCALLSALR 213
L+G S+G + T LA ++ G+ ++SA++
Sbjct: 82 LFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQ 115
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%)
Query: 121 SLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYWDIEAVYHTLR-LKYNINCDQII 179
+LA +D L + +++ G G S GR N ++E + LR ++++ + D I
Sbjct: 54 TLAKALD---ELGLKTVRFNFRGVGKSQGRYD--NGVGEVEDLKAVLRWVEHHWSQDDIW 108
Query: 180 LYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKS 239
L G S G+ + +A VA L+S VF ++G + L ++ S
Sbjct: 109 LAGFSFGAYISAKVAYDQKVA------QLISVAPPVF--------YEGFAS---LTQMAS 151
Query: 240 PVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
P L++ G +DE+V F + VE + + GA H
Sbjct: 152 PWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASH 190
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 77 AIISRNVFWTTNCKGNKIACIMIPHNEAVFTIIYSHGNGCDMGQSLATFMDLSARLKCNV 136
+I+SRN KG+ A IM ++ G GCD QS+ + + V
Sbjct: 6 SILSRN---HVKVKGSGKASIM-----------FAPGFGCD--QSVWNAVAPAFEEDHRV 49
Query: 137 LLYDYSGYGSSTGRASEANLYWDIEA-VYHTLRLKYNINCDQIILYGQSIGSV 188
+L+DY G G S RA + N Y ++ L + ++ + + G S+G++
Sbjct: 50 ILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGAL 102
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 231 IDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH-NNIEMFEQYLT 289
ID+LP + +PVLVI G DE + + P+V ++ PG H ++E E++
Sbjct: 256 IDRLPDVTAPVLVIAGEHDEATPKT-WQPFVDHIPDVRSHVF-PGTSHCTHLEKPEEFRA 313
Query: 290 RLDKFINE 297
+ +F+++
Sbjct: 314 VVAQFLHQ 321
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 15/151 (9%)
Query: 113 GNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYWDIEAVYHTLRLKYN 172
GN G ++AT + S R+ VL+ G+ N W +R
Sbjct: 101 GNSFGGGLAIATALRYSERVDRMVLM---GAVGTRFDVTEGLNAVWGYTPSIENMR---- 153
Query: 173 INCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSLWFDGLKNID 232
N I Y +S+ + L ++ + +FP R+ W D L + D
Sbjct: 154 -NLLDIFAYDRSLVTDELARLRYEASI-----QPGFQESFSSMFPEPRQR-WIDALASSD 206
Query: 233 K-LPKIKSPVLVIHGTRDEIVDFSHGMTIYE 262
+ + + + L+IHG D++V S + + E
Sbjct: 207 EDIKTLPNETLIIHGREDQVVPLSSSLRLGE 237
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 15/151 (9%)
Query: 113 GNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYWDIEAVYHTLRLKYN 172
GN G ++AT + S R+ VL+ G+ N W +R
Sbjct: 101 GNAFGGGLAIATALRYSERVDRMVLM---GAAGTRFDVTEGLNAVWGYTPSIENMR---- 153
Query: 173 INCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSLWFDGLKNID 232
N I Y +S+ + L ++ + +FP R+ W D L + D
Sbjct: 154 -NLLDIFAYDRSLVTDELARLRYEASI-----QPGFQESFSSMFPEPRQR-WIDALASSD 206
Query: 233 K-LPKIKSPVLVIHGTRDEIVDFSHGMTIYE 262
+ + + + L+IHG D++V S + + E
Sbjct: 207 EDIKTLPNETLIIHGREDQVVPLSSSLRLGE 237
>pdb|3LLC|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_002548124.1)
From Agrobacterium Vitis S4 At 1.80 A Resolution
Length = 270
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 95 ACIMIPHNEAVFTIIYSHGNGCD-MGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASE 153
A + P + T I+ G D G DL+A L + +DYSG+G+S G +
Sbjct: 27 ALVRAPAQDERPTCIWLGGYRSDXTGTKALEXDDLAASLGVGAIRFDYSGHGASGGAFRD 86
Query: 154 ANL-YWDIEAVYHTLRLKYNINCDQIILYGQSIGS 187
+ W EA L + + ++ IL G S G
Sbjct: 87 GTISRWLEEA----LAVLDHFKPEKAILVGSSXGG 117
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 25/132 (18%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLK-CNVLLYDYSGYGSSTGRASEANLYWDIEAVYH 165
T+++ HG+GC+ L F +L L+ N +L D G+G S G+ + +Y I+ V +
Sbjct: 18 TLLFVHGSGCN----LKIFGELEKYLEDYNCILLDLKGHGESKGQCP-STVYGYIDNVAN 72
Query: 166 TL-RLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSLW 224
+ + + I L G S G ++L AL PN RK +
Sbjct: 73 FITNSEVTKHQKNITLIGYSXG-------------GAIVLGVALKK-----LPNVRKVVS 114
Query: 225 FDGLKNIDKLPK 236
G DKL K
Sbjct: 115 LSGGARFDKLDK 126
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 42/199 (21%)
Query: 80 SRNVFWTTNCKGNKIACIMIPHNEAVFTIIYSHGNGCDMGQ--SLATFMDLSAR------ 131
+ N+++ +N ++ M P +A F +I+ HG G D + + D+S
Sbjct: 15 TENLYFQSNAMNYEL---MEPAKQARFCVIWLHGLGADGHDFVDIVNYFDVSLDEIRFIF 71
Query: 132 -------LKCNVLLYDYSGYGSSTGRASEANLYWDIEAVYHTL---------RLKYNINC 175
+ N+ + + Y + A+ N D+E + ++ ++ I
Sbjct: 72 PHADIIPVTINMGMQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIAS 131
Query: 176 DQIILYGQSIGSVPTVYLA--SRVNVAGVILHCALLSALRVVFPNFRKSLWFDGLKNIDK 233
+ IIL G S G + Y A S+ + G++ L A + NF+ + +I+K
Sbjct: 132 ENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPA----WDNFKGK-----ITSINK 182
Query: 234 LPKIKSPVLVIHGTRDEIV 252
P+LV HGT D+++
Sbjct: 183 ----GLPILVCHGTDDQVL 197
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFS 255
D L +I PVLV HGT D++V ++
Sbjct: 209 DDLKRIDVPVLVAHGTDDQVVPYA 232
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 52/210 (24%)
Query: 98 MIPHNEAVFTI------IYSHG-NGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGR 150
++P E ++++ + SHG G QS+ + AR V +G+G++
Sbjct: 38 VLPGAEPLYSVGSRIGVLVSHGFTGSP--QSMRFLAEGFARAGYTVATPRLTGHGTTPAE 95
Query: 151 -ASEANLYW--DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRV--NVAGVI-L 204
A+ W DI A L + CD + + G S+G TV+ A + AG++ +
Sbjct: 96 MAASTASDWTADIVAAMRWLEER----CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPI 151
Query: 205 HCAL------LSALR------VVFPNFRKSLWFDGLKNIDK------------------- 233
+ AL L+AL P + +G+K +
Sbjct: 152 NAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAE 211
Query: 234 --LPKIKSPVLVIHGTRDEIVDFSHGMTIY 261
LP++K P L+I D +V +G IY
Sbjct: 212 MLLPRVKCPALIIQSREDHVVPPHNGELIY 241
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 222 SLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN 279
+ W+ + +P+I P L++HGT D + + ++ E + V GA H
Sbjct: 204 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHG 259
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 52/210 (24%)
Query: 98 MIPHNEAVFTI------IYSHG-NGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGR 150
++P E ++++ + SHG G QS+ + AR V +G+G++
Sbjct: 36 VLPGAEPLYSVGSRIGVLVSHGFTGSP--QSMRFLAEGFARAGYTVATPRLTGHGTTPAE 93
Query: 151 -ASEANLYW--DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRV--NVAGVI-L 204
A+ W DI A L + CD + + G S+G TV+ A + AG++ +
Sbjct: 94 MAASTASDWTADIVAAMRWLEER----CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPI 149
Query: 205 HCAL------LSALR------VVFPNFRKSLWFDGLKNIDK------------------- 233
+ AL L+AL P + +G+K +
Sbjct: 150 NAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAE 209
Query: 234 --LPKIKSPVLVIHGTRDEIVDFSHGMTIY 261
LP++K P L+I D +V +G IY
Sbjct: 210 MLLPRVKCPALIIQSREDHVVPPHNGELIY 239
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 71/177 (40%), Gaps = 40/177 (22%)
Query: 102 NEAVFTIIYSHGNGCD------MGQSLA------TFMDLSARLKCNVLLYDY-------- 141
EA +++ HG G D + + LA F+ A C + +
Sbjct: 63 GEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAPEPCRACGFGFQWFPIPWL 122
Query: 142 SGYGSSTGRASEANLYWDIEAVYHTLRL-KYNINCDQIILYGQSIGSVPTVYLASR--VN 198
G + A D++A +H RL + + + + L G S G++ +++A R
Sbjct: 123 DGSSETAAAEGMAAAARDLDA-FHDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEE 181
Query: 199 VAGVILHCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFS 255
+AG++ R++ P + + + + K PVL++HG D +V F+
Sbjct: 182 IAGIVGFSG-----RLLAP-----------ERLAEEARSKPPVLLVHGDADPVVPFA 222
>pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptidase A From
Helicoverpa Armigera
Length = 433
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 100 PHNEAVFTIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYW- 158
P + + II H N +A ++D+ + +++LY GYG+ ++ L+
Sbjct: 283 PESSVIRDIIAEHRN------RMALYLDIHSF--GSMILY---GYGNGVLPSNALQLHLI 331
Query: 159 DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPN 218
++ R+K++ N D I+ G++ V A+ + + A + P
Sbjct: 332 GVQMAQAIDRVKWSSNKDYIV------GNIFHVLYAASGGASDYAMQAAAPFSYTYELPA 385
Query: 219 FRKSLWFDGL 228
+R S+WFDG
Sbjct: 386 YRNSVWFDGF 395
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 222 SLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN 279
+ W+ + +P+I P L++HGT D + + ++ E + V GA H
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHG 258
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 222 SLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN 279
+ W+ + +P+I P L++HGT D + + ++ E + V GA H
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHG 258
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 222 SLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN 279
+ W+ + +P+I P L++HGT D + + ++ E + V GA H
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHG 258
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 224 WFDGLKNIDKLP----------KIKSPVLVIHGTRDEIVDFSHGMTIYE 262
W DG++ LP +++ P L++HG +D +V H I++
Sbjct: 172 WVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHK 220
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 224 WFDGLKNIDKLP----------KIKSPVLVIHGTRDEIVDFSHGMTIYE 262
W DG++ LP +++ P L++HG +D +V H I++
Sbjct: 172 WVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHK 220
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 224 WFDGLKNIDKLP----------KIKSPVLVIHGTRDEIVDFSHGMTIYE 262
W DG++ LP +++ P L++HG +D +V H I++
Sbjct: 172 WVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHK 220
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTI---YESCPNVVEPLWVPGAGHNNIEMFEQYL 288
D + K PVL++HG +DE V + + Y++C V +PG H E
Sbjct: 183 DFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVT----IPGDTHCYDHHLELVT 238
Query: 289 TRLDKFINEELMQ 301
+ +F+ E++ +
Sbjct: 239 EAVKEFMLEQIAK 251
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 234 LPKIKSPVLVIHGTRDEIVDFSH-GMTIYESCPN 266
L K P L+IHG D V F + G +E+ PN
Sbjct: 217 LEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIPN 250
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 237 IKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWV---PGAGHN 279
++SP+L+IHG D+ V F++ ++ + +P + PGA H
Sbjct: 673 LRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHG 718
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,113,913
Number of Sequences: 62578
Number of extensions: 360810
Number of successful extensions: 975
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 28
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)