RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2106
(313 letters)
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 118 bits (298), Expect = 1e-31
Identities = 42/234 (17%), Positives = 79/234 (33%), Gaps = 24/234 (10%)
Query: 91 GNKIACIMI-PHNEAVFTIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTG 149
++++ ++ P +++ HG G SL + L C + +D G+
Sbjct: 15 QDELSGTLLTPTGMPG--VLFVHGWGGSQHHSLVRAREA-VGLGCICMTFDLRGHEGYAS 71
Query: 150 R---ASEANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHC 206
+ A DI+A Y L ++ I + G S G + L V + L
Sbjct: 72 MRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERPVEWLALRS 131
Query: 207 ALLS-------------ALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVD 253
L A + R++L + + K VL++ D IV
Sbjct: 132 PALYKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVIVP 191
Query: 254 FSHGMTIYESCPN--VVEPLWVPGAGHN--NIEMFEQYLTRLDKFINEELMQRY 303
++ N + + GA H E ++Y L ++ E ++ R
Sbjct: 192 HPVMRNYADAFTNARSLTSRVIAGADHALSVKEHQQEYTRALIDWLTEMVVGRR 245
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Length = 208
Score = 103 bits (259), Expect = 6e-27
Identities = 40/217 (18%), Positives = 70/217 (32%), Gaps = 31/217 (14%)
Query: 83 VFWTTNCKGNKIACIMIPHNEAVFTIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYS 142
+ + + I PH HG + L L + +++
Sbjct: 22 ITRPKGIEKSVTGIICHPH--------PLHGGTMNNKVVTTLAKAL-DELGLKTVRFNFR 72
Query: 143 GYGSSTGRASEANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGV 202
G G S GR + ++++ + D I L G S G+ + +A VA +
Sbjct: 73 GVGKSQGRYDNGVGEVEDLKAVLRW-VEHHWSQDDIWLAGFSFGAYISAKVAYDQKVAQL 131
Query: 203 ILHCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYE 262
I + L ++ SP L++ G +DE+V F
Sbjct: 132 ISVAP-----------------PVFYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVN 174
Query: 263 SCPNVVEPLWVPGAGHNNIEMFEQYLTRLDKFINEEL 299
+ VE + + GA H F L L + + L
Sbjct: 175 QISSPVEFVVMSGASH----FFHGRLIELRELLVRNL 207
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 105 bits (263), Expect = 8e-27
Identities = 42/269 (15%), Positives = 79/269 (29%), Gaps = 36/269 (13%)
Query: 61 GQKKNKCILKMNQKKHAIISRNVFWTTNCKGNKIACIM-IPHNEAVFTIIYSHGNGCDMG 119
G + ++ T G ++ P E I HG +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGMATI-TLERDGLQLVGTREEPFGEIYDMAIIFHGFTANRN 60
Query: 120 QSLATFM-DLSARLKCNVLLYDYSGYGSSTGRASEANLY-W--DIEAVYHTLRLKYNINC 175
SL + + + +D++G+G S G+ + D A+ + ++ ++
Sbjct: 61 TSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHV-- 118
Query: 176 DQIILYGQSIGSVPTVYLASRV--NVAGVILHCA--------LLSALRVVFPN------- 218
I L G + G V LA + V+L L + V N
Sbjct: 119 RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDR 178
Query: 219 -------FRKSLWFDGLKN--IDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVE 269
+ + + PV +IHGT D +V + + N
Sbjct: 179 LPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN-ST 237
Query: 270 PLWVPGAGHN-NIEMFEQYLTRLDKFINE 297
+ GA H + + + F+
Sbjct: 238 LHLIEGADHCFSDSYQKNAVNLTTDFLQN 266
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 103 bits (259), Expect = 2e-26
Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 37/250 (14%)
Query: 86 TTNCKGNKIACIM-IPHN--EAVFTIIYSHGNGCDMGQSLATFM-DLSARLKCNVLLYDY 141
+C G K+ + +P N E I HG + + + + L D
Sbjct: 5 YIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADM 64
Query: 142 SGYGSSTGRASEANLY-W--DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRV- 197
G+G S G+ + L+ W +I AV + + I + G S G + + A+
Sbjct: 65 YGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMER 122
Query: 198 -NVAGVILHCALLSALRVVFPNFRKSLWF-----------------------DGLKN--I 231
+ +I + L F
Sbjct: 123 DIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVE 182
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHNNIEMFEQYLTRL 291
D + K PVL++HG +DE V + + + N + + +PG H E +
Sbjct: 183 DFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKN-CKLVTIPGDTHCYDHHLELVTEAV 241
Query: 292 DKFINEELMQ 301
+F+ E++ +
Sbjct: 242 KEFMLEQIAK 251
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 102 bits (256), Expect = 1e-25
Identities = 41/248 (16%), Positives = 74/248 (29%), Gaps = 49/248 (19%)
Query: 91 GNKIACIMIPHNEAVF----TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGY-G 145
G ++ P E V TI+ + G M L + +V YD + G
Sbjct: 17 GQELHVWETPPKENVPFKNNTILIASGFARRMDHFAGLAEYL-STNGFHVFRYDSLHHVG 75
Query: 146 SSTGRASEANL---YWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGV 202
S+G E + + VYH L+ K I L S+ + + S + ++ +
Sbjct: 76 LSSGSIDEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISDLELSFL 132
Query: 203 ILHCALLSALRVVFPNFRK---SLWFDGLKN----------------------------- 230
I +++ + SL D L N
Sbjct: 133 ITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDST 192
Query: 231 IDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN-VVEPLWVPGAGHNNIEMFEQYLT 289
+DK+ P++ D+ V + + + G+ H+ + L
Sbjct: 193 LDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTGHCKLYSLLGSSHD----LGENLV 248
Query: 290 RLDKFINE 297
L F
Sbjct: 249 VLRNFYQS 256
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 85.8 bits (212), Expect = 2e-20
Identities = 26/194 (13%), Positives = 61/194 (31%), Gaps = 27/194 (13%)
Query: 107 TIIYSHGNGCDMGQSLATFM-DLSARLKCNVLLYDYSGYGSSTGRASEANLYWDIEAVYH 165
I +HG T + +++ RL D++ + ++ ++ +
Sbjct: 6 HCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVRGRLQRLLE 65
Query: 166 TLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSLWF 225
R ++L G S+GS ++ +V + L P
Sbjct: 66 IAR--AATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFLMV----------PPT------ 107
Query: 226 DGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHNNIEMFE 285
+ + L P+ ++H DE++ + + ++ L + GH
Sbjct: 108 -KMGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARS---ARLLLVDDGHR----LG 159
Query: 286 QYLTRLDKFINEEL 299
++ + E L
Sbjct: 160 AHVQAASRAFAELL 173
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 85.9 bits (212), Expect = 2e-20
Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 5/147 (3%)
Query: 159 DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPN 218
+ + + + ++ I+ G S G++ + A V ++L A S L
Sbjct: 51 RESIWLPFMETELHCD-EKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENE- 108
Query: 219 FRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
R S +F +K+ ++ T D + + + + + GH
Sbjct: 109 -RASGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLE--TKLHKFTDCGH 165
Query: 279 NNIEMFEQYLTRLDKFINEELMQRYHQ 305
F + +T + + ++ +H
Sbjct: 166 FQNTEFHELITVVKSLLKVPALEHHHH 192
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 84.3 bits (208), Expect = 2e-18
Identities = 40/225 (17%), Positives = 66/225 (29%), Gaps = 31/225 (13%)
Query: 100 PHNEAVFTIIYSHGNGCDMGQS-LATFMDLSARLKCNVLLYDYSGYGSSTGR-ASEANLY 157
P + G G + + +L +D G G +
Sbjct: 146 PEGPGPHPAVIMLG-GLESTKEESFQMENLVLDRGMATATFDGPGQGEMFEYKRIAGDYE 204
Query: 158 WDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRV-----NVAGVILHCAL--LS 210
AV L I D I + G+S+G A + +A I L
Sbjct: 205 KYTSAVVDLLTKLEAIRNDAIGVLGRSLGG----NYALKSAACEPRLAACISWGGFSDLD 260
Query: 211 ALRVVFPNFRKSLWF---------------DGLKNIDKLPKIKSPVLVIHGTRDEIVDFS 255
+ P ++S + L+ D L +I P ++HG DE V S
Sbjct: 261 YWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLS 319
Query: 256 HGMTIYESCPNVVEPLWV-PGAGHNNIEMFEQYLTRLDKFINEEL 299
T+ E P L V H + + + ++ + L
Sbjct: 320 FVDTVLELVPAEHLNLVVEKDGDHCCHNLGIRPRLEMADWLYDVL 364
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 83.1 bits (205), Expect = 5e-18
Identities = 34/227 (14%), Positives = 65/227 (28%), Gaps = 38/227 (16%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYWDIEAVYHT 166
+I S G F D A+ +L D G S+ + +AV +
Sbjct: 195 VVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPLTEDYSRLHQAVLNE 254
Query: 167 LRLKYNINCDQIILYGQSIGSVPTVYLASRVN--VAGVILHCALLSALRVVFPNFRK--- 221
L ++ ++ L G G V L+ + ++ A + + ++
Sbjct: 255 LFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPK 314
Query: 222 ---------------------------SLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDF 254
SL G + K K P+L + D + +
Sbjct: 315 MYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSR---KTKVPILAMSLEGDPVSPY 371
Query: 255 SHGMTIYESCPNVVEPLWVPGAGHNNIEMFEQYLTRLDKFINEELMQ 301
S + +EQ L K++ +EL++
Sbjct: 372 SDNQMVAFFSTYGKAKKISSKTITQG---YEQSLDLAIKWLEDELLR 415
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 79.1 bits (195), Expect = 3e-17
Identities = 36/236 (15%), Positives = 69/236 (29%), Gaps = 57/236 (24%)
Query: 108 IIYSHGNGCDMGQSLATFMDLSARLK---CNVLLYDYSGYGSSTGRASEAN---LYWDIE 161
++ HG + + L+ V L G+G+ +E
Sbjct: 43 VLLVHG----FTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDWVASVE 98
Query: 162 AVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRV-NVAGVILHCALLS-----ALRVV 215
Y L+ + C I + G S+G T+YLA ++ G++ A + A
Sbjct: 99 EGYGWLKQR----CQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTG 154
Query: 216 FPNFRKSLWFDGLKNID----------------------------KLPKIKSPVLVIHGT 247
+ L G + KL +I P L+
Sbjct: 155 GGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSD 214
Query: 248 RDEIVDFSHGMTIYESCPNV-VEPLWVPGAGHNNIEMF-----EQYLTRLDKFINE 297
D +V + I++ + E + + + H + R +F +
Sbjct: 215 EDHVVPPGNADIIFQGISSTEKEIVRLRNSYH---VATLDYDQPMIIERSLEFFAK 267
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 77.9 bits (192), Expect = 6e-17
Identities = 40/231 (17%), Positives = 69/231 (29%), Gaps = 60/231 (25%)
Query: 90 KGNKIACIMIPHNEAVFTIIYSHGNGCDMGQSLATFMDLSARLK---CNVLLYDYSGYGS 146
+ + A +++ HG + A L L+ Y G+G
Sbjct: 13 EAGERAVLLL------------HG----FTGNSADVRMLGRFLESKGYTCHAPIYKGHGV 56
Query: 147 STGRASEANLY-W--DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVI 203
W D+ Y L+ K ++I + G S+G V ++ L V + G++
Sbjct: 57 PPEELVHTGPDDWWQDVMNGYEFLKNK---GYEKIAVAGLSLGGVFSLKLGYTVPIEGIV 113
Query: 204 LHCA----------LLSALRVVFPNFRK----------------SLWFDGLKNI------ 231
CA L ++ LK +
Sbjct: 114 TMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIAD 173
Query: 232 --DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCP-NVVEPLWVPGAGHN 279
D L I +P V+ DE+++ IY V + W +GH
Sbjct: 174 VRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQIKWYEQSGHV 224
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 75.3 bits (185), Expect = 4e-16
Identities = 33/252 (13%), Positives = 71/252 (28%), Gaps = 67/252 (26%)
Query: 90 KGNKIACIMIPHNEAVFTIIYSHGNGCDMGQSLATFMDLSARLK---CNVLLYDYSGYGS 146
+G +++ H S ++ L+ V + +SG+G+
Sbjct: 19 EGTDTGVVLL------------HA----YTGSPNDMNFMARALQRSGYGVYVPLFSGHGT 62
Query: 147 STGRASEANLYW-----DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRV--NV 199
+ A + K ++ ++G S+G + + +
Sbjct: 63 VEPLDILTKGNPDIWWAESSAAVAHMTAK----YAKVFVFGLSLGGIFAMKALETLPGIT 118
Query: 200 AGVILHCALLSALRVVFPNFRKSL-WFDGLKNIDK------------------------- 233
AG + +L + P F K + + L
Sbjct: 119 AGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAA 178
Query: 234 -LPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNV--VEPLWVPGAGHNNIEMF-----E 285
L +K P + +DE+VD + ++ N V+ W A H +
Sbjct: 179 DLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINAARVDFHWYDDAKH---VITVNSAHH 235
Query: 286 QYLTRLDKFINE 297
+ F+ +
Sbjct: 236 ALEEDVIAFMQQ 247
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 72.9 bits (178), Expect = 3e-15
Identities = 33/219 (15%), Positives = 56/219 (25%), Gaps = 29/219 (13%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANL--YWD----- 159
++ HG LA A +L +D +G G + Y +
Sbjct: 26 LLLALHGLQGSKEHILALLPGY-AERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRV 84
Query: 160 ----IEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASR---VNVAGVILHCALLSAL 212
E + L G S+G+ L + + L
Sbjct: 85 ALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKL 144
Query: 213 RVVFPNFRKSLW----FDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYES----- 263
+ + + P+L +HG+RD IV + E+
Sbjct: 145 PQGQVVEDPGVLALYQAPPATRGEAYGGV--PLLHLHGSRDHIVPLARMEKTLEALRPHY 202
Query: 264 CPNVVEPLWVPGAGHNNIEMFEQYLTRLDKFINEELMQR 302
+ GAGH + F+ L R
Sbjct: 203 PEGRLARFVEEGAGH---TLTPLMARVGLAFLEHWLEAR 238
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 72.4 bits (177), Expect = 6e-15
Identities = 21/175 (12%), Positives = 40/175 (22%), Gaps = 18/175 (10%)
Query: 108 IIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYWDIEAVYHTL 167
I++ +G G A V + S G+ Y E
Sbjct: 52 ILWGNGTGAGPSTYAGLLSHW-ASHGFVVAAAETSNAGTGR-EMLACLDYLVRENDTPYG 109
Query: 168 RLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSLWFDG 227
+N ++ G S G ++ V
Sbjct: 110 TYSGKLNTGRVGTSGHSQGGGGSIMAGQDTRVRTTAPIQPYT---------------LGL 154
Query: 228 LKNIDKLPKIKSPVLVIHGTRDEIV-DFSHGMTIYESCPNVVEPLWVPGAGHNNI 281
+ + + P+ ++ G D I + + +Y V H
Sbjct: 155 GHDSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRRANVPVFWGERRYVSHFEP 209
>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics,
APC5865, hydrolase, PSI-2, protein STRU initiative; HET:
MSE; 1.50A {Agrobacterium tumefaciens str} SCOP:
c.69.1.36
Length = 249
Score = 67.2 bits (163), Expect = 4e-13
Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 25/216 (11%)
Query: 93 KIACIMIPHNEAVF-TIIYSHGNGCDMG----QSLATFMDLSARLKCNVLLYDYSGYGSS 147
++ P E I H + G Q + L + L +++ G S
Sbjct: 34 RLEGRYQPSKEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRS 93
Query: 148 TGRASEANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCA 207
G A + + + G S G+ + L R
Sbjct: 94 QGEFDHGAGELSDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMR--------RPE 145
Query: 208 LLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN- 266
+ + + F L S L+I+G D++ + E
Sbjct: 146 IEGFMSIAPQPNTYDFSF--------LAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQ 197
Query: 267 ---VVEPLWVPGAGHNNIEMFEQYLTRLDKFINEEL 299
++ +PGA H ++ + + +++ L
Sbjct: 198 KGILITHRTLPGANHFFNGKVDELMGECEDYLDRRL 233
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 68.2 bits (166), Expect = 5e-13
Identities = 38/310 (12%), Positives = 80/310 (25%), Gaps = 56/310 (18%)
Query: 44 QCAFFPPRPASYKIIEHGQKKNKCILKMNQKKHAIISRNVFWTTNCKGNKIACIMIP-HN 102
+ A P + +E+ ++ K + + +G + I +
Sbjct: 100 RAALQFTDPKDSEFMENFRRMEKLFMLAVDNSKIPLKS---IEVPFEGELLPGYAIISED 156
Query: 103 EAVFTIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYWDIEA 162
+A T+I G NVL+ D G G + + + A
Sbjct: 157 KAQDTLIVVGGGDTSREDLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQGLHFEVDA--RA 214
Query: 163 VYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRV-NVAGVILHCALLSALRVVFPNFRK 221
+ Y ++I + G S G T + + I + V +F
Sbjct: 215 AISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKRIKAWIASTPIYDVAEVFRISFST 274
Query: 222 SL------------------------------------WFDGLKN------IDKLPKIKS 239
+L + + I KI
Sbjct: 275 ALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDV 334
Query: 240 PVLVIHGTRDEIVDFSHGMTIYESCPNVVEP--LWVP-----GAGHNNIEMFEQYLTRLD 292
P L + G ++ +Y++ L H + F ++
Sbjct: 335 PSLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVF 394
Query: 293 KFINEELMQR 302
+++N ++
Sbjct: 395 EWLNHIFKKK 404
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 66.8 bits (163), Expect = 9e-13
Identities = 37/267 (13%), Positives = 74/267 (27%), Gaps = 59/267 (22%)
Query: 84 FWTTNCKGNKIAC-IMIPHNEAVF-TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDY 141
+ T +G +I + P E +I HG V+ D
Sbjct: 85 LYFTGVRGARIHAKYIKPKTEGKHPALIRFHGYS--SNSGDWNDKLNYVAAGFTVVAMDV 142
Query: 142 SGYGSSTGRASEA-----------------------NLYWDIEAVYHTLRLKYNINCDQI 178
G G + +++ D + + ++ D++
Sbjct: 143 RGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRV 202
Query: 179 ILYGQSIGSVPTVYLASRVN-VAGVILHCALLSALRVVFPN------------------- 218
+ G S G ++ A+ V V+ LS + V+
Sbjct: 203 GVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDP 262
Query: 219 --------FRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEP 270
F K + D +IK VL+ G D++ S Y + + +
Sbjct: 263 RHERENEVFTKLGYIDVKNLAK---RIKGDVLMCVGLMDQVCPPSTVFAAYNNIQSKKDI 319
Query: 271 LWVPGAGHNNI-EMFEQYLTRLDKFIN 296
P GH + + + + + +
Sbjct: 320 KVYPDYGHEPMRGFGDLAMQFMLELYS 346
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 65.4 bits (160), Expect = 1e-12
Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 57/237 (24%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLK-CNVLLYDYSGYGSSTGRA--SEANLYWDIEAV 163
T+++ HG+GC +L F +L L+ N +L D G+G S G+ + ++
Sbjct: 18 TLLFVHGSGC----NLKIFGELEKYLEDYNCILLDLKGHGESKGQCPSTVYGYIDNVANF 73
Query: 164 YHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVN--VAGVILHCA-----------LLS 210
+ + I L G S+G + +A + V V+ +
Sbjct: 74 ITNSEVTKHQ--KNITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGGARFDKLDKDFMEK 131
Query: 211 ALRVVFPNFRKSLWFDGLKN-----------------------------IDKLPKIKSPV 241
N G+ N +D L I PV
Sbjct: 132 IYHNQLDNNYLLECIGGIDNPLSEKYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPV 191
Query: 242 LVIHGTRDEIVDFSHGMTIYESCPN--VVEPLWVPGAGHN-NIEMFEQYLTRLDKFI 295
I + + + I + N + H + + + FI
Sbjct: 192 KAIVAKDELLTLVEYSEIIKKEVENSELKI---FETGKHFLLVVNAKGVAEEIKNFI 245
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 64.3 bits (156), Expect = 4e-12
Identities = 45/247 (18%), Positives = 76/247 (30%), Gaps = 38/247 (15%)
Query: 71 MNQKKHAIISRNVFWTTNCKGNKIACIM-IPHNEAVFTIIYSHGNGCDMGQSLATFM-DL 128
M I + + IA ++ P + T I+ G DM + A M DL
Sbjct: 2 MTNVGRPIETHAITVGQGSDARSIAALVRAPAQDERPTCIWLGGYRSDMTGTKALEMDDL 61
Query: 129 SARLKCNVLLYDYSGYGSSTGRASEANLY-W--DIEAVYHTLRLKYNINCDQ--IILYGQ 183
+A L + +DYSG+G+S G + + W + AV + + I
Sbjct: 62 AASLGVGAIRFDYSGHGASGGAFRDGTISRWLEEALAVLDHFKPEKAILVGSSMGGWIAL 121
Query: 184 SIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNF------------------------ 219
+ + V+G++L +
Sbjct: 122 RLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPE 181
Query: 220 ----RKSLWFDGLKNI--DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNV-VEPLW 272
++L DG N + PV ++ G D V + H + + E P V
Sbjct: 182 PNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPADDVVLTL 241
Query: 273 VPGAGHN 279
V H
Sbjct: 242 VRDGDHR 248
>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY
diffraction; 1.60A {Xanthomonas campestris} SCOP:
c.69.1.36
Length = 220
Score = 61.9 bits (149), Expect = 2e-11
Identities = 36/198 (18%), Positives = 60/198 (30%), Gaps = 25/198 (12%)
Query: 107 TIIYSHGN---GCDMGQSLATFM-DLSARLKCNVLLYDYSGYGSSTGRASE-ANLYWDIE 161
T I H G M + T L V+ +++ G+S G D+
Sbjct: 39 TAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGSFDHGDGEQDDLR 98
Query: 162 AVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRK 221
AV +R + D + L G S G+ ++ A+ + +
Sbjct: 99 AVAEWVRAQRP--TDTLWLAGFSFGAYVSLRAAAALEPQVL------------------I 138
Query: 222 SLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHNNI 281
S+ + + + LVI G DEIVD E+ + +P H
Sbjct: 139 SIAPPAGRWDFSDVQPPAQWLVIQGDADEIVDPQAVYDWLETLEQQPTLVRMPDTSHFFH 198
Query: 282 EMFEQYLTRLDKFINEEL 299
L + L
Sbjct: 199 RKLIDLRGALQHGVRRWL 216
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 62.5 bits (151), Expect = 3e-11
Identities = 41/219 (18%), Positives = 65/219 (29%), Gaps = 39/219 (17%)
Query: 95 ACIMIPHNEAVF-TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASE 153
A + +P F II G G G L L A L Y +
Sbjct: 147 ATLFLPPGPGPFPGIIDIFGIG---GGLLEYRASLLAGHGFATLALAYYNFEDLPNNMDN 203
Query: 154 ANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASR---------VNVAGVIL 204
+L E + + I L G S+G+ + +AS +N +G+
Sbjct: 204 ISL-EYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISG 262
Query: 205 HCALLSALRVVFP----NFRKSLWFDGLKNID----------------KLPKIKSPVLVI 244
+ A+ + P R + F GL +I + K + P+L+I
Sbjct: 263 NTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLI 322
Query: 245 HGTRDEIVDFSHGMTIYESC-----PNVVEPLWVPGAGH 278
G D + + PG GH
Sbjct: 323 VGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGH 361
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 60.4 bits (147), Expect = 7e-11
Identities = 32/207 (15%), Positives = 71/207 (34%), Gaps = 54/207 (26%)
Query: 136 VLLYDYSGYGSST---GRASEANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVY 192
V+ +D GYG S D + ++ ++ L G S G + +
Sbjct: 54 VVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMK-ALKF--KKVSLLGWSDGGITALI 110
Query: 193 LASRV--NVAGVILHCA----------LLSALRVVFPNFRKSL----------------- 223
A++ + +++ A + +R V ++
Sbjct: 111 AAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCE 170
Query: 224 -WFDGLKNI----------DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN---VVE 269
W DG++ LP+++ P L++HG +D +V H I++ +
Sbjct: 171 KWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHL- 229
Query: 270 PLWVPGAGHN-NIEMFEQYLTRLDKFI 295
+P HN ++ +++ + F+
Sbjct: 230 ---MPEGKHNLHLRFADEFNKLAEDFL 253
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 59.8 bits (144), Expect = 2e-10
Identities = 42/284 (14%), Positives = 73/284 (25%), Gaps = 39/284 (13%)
Query: 30 LFCCAGCRPSRMITQCAFFPPRPASYKIIEHGQKKNKCILKMNQKKHAIISRNVFWTTNC 89
L+ +P + + P ++++ +L + + + V
Sbjct: 98 LWALEPEKPLVRLVKRDVRTPLAVELEVLDGHDPDPGRLLCQTRHERYFLPPGVRREPVR 157
Query: 90 KGNKIACIMIPHNEAVF-TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSST 148
G + +P F I+ G G G L L A V+ Y Y
Sbjct: 158 VGRVRGTLFLPPEPGPFPGIVDMFGTG---GGLLEYRASLLAGKGFAVMALAYYNYEDLP 214
Query: 149 GRASEANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASR------------ 196
+L E + L + + L G S G + +AS
Sbjct: 215 KTMETLHL-EYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVING 273
Query: 197 -VNVAGVILHCALLSALRVVFPNFRKSLWFDGLKNIDKLP----------------KIKS 239
V G L + V R + DG +I + + +S
Sbjct: 274 SVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAES 333
Query: 240 PVLVIHGTRDEIVDFSHGMTIYESC-----PNVVEPLWVPGAGH 278
L + G D + + P GH
Sbjct: 334 TFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGH 377
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 58.3 bits (141), Expect = 6e-10
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLTR 290
+L ++ P LVI D I HG + P +PG GH +
Sbjct: 231 AELREVTVPTLVIQAEHDPIAPAPHGKHLAGLIPT-ARLAEIPGMGHALPSSVHGPLAEV 289
Query: 291 LDKFI 295
+
Sbjct: 290 ILAHT 294
Score = 30.2 bits (68), Expect = 0.76
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLY------WDI 160
++ G F A +V+ YD+ G ST R A+ Y D
Sbjct: 25 ALLLVMGGNLSALGWPDEFARRLADGGLHVIRYDHRDTGRSTTRDFAAHPYGFGELAADA 84
Query: 161 EAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASR 196
AV + D+ + G S+G+ T +A
Sbjct: 85 VAVLDGWGV------DRAHVVGLSMGATITQVIALD 114
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 57.7 bits (140), Expect = 7e-10
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 207 ALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN 266
+ ALR +LW +L +IK P L++ G DE + PN
Sbjct: 183 KMAKALRDYGTGQMPNLW-------PRLKEIKVPTLILAGEYDEKF-VQIAKKMANLIPN 234
Query: 267 ---VVEPLWVPGAGHN-NIEMFEQYLTRLDKFINEE 298
+ + GH ++E +++ T + F+ EE
Sbjct: 235 SKCKL----ISATGHTIHVEDSDEFDTMILGFLKEE 266
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 57.0 bits (138), Expect = 1e-09
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 211 ALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEP 270
+ +FP R+ + + + + + L+IHG D++V S + + E +
Sbjct: 186 SFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDR-AQL 244
Query: 271 LWVPGAGHN-NIEMFEQYLTRLDKFINE 297
GH IE +++ + +F NE
Sbjct: 245 HVFGRCGHWTQIEQTDRFNRLVVEFFNE 272
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 56.7 bits (137), Expect = 2e-09
Identities = 36/271 (13%), Positives = 69/271 (25%), Gaps = 102/271 (37%)
Query: 107 TIIYSHG---NGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYW----- 158
+ HG + + D + V+ +D G G S + L+
Sbjct: 27 ALFVLHGGPGGNAYVLREG--LQDYLEGFR--VVYFDQRGSGRSLELPQDPRLFTVDALV 82
Query: 159 -DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRV--NVAGVILHCALLSAL--- 212
D + L + ++ L G+V + + R ++L +
Sbjct: 83 EDTLLLAEALGV------ERFGLLAHGFGAVVALEVLRRFPQAEGAILLAPWVNFPWLAA 136
Query: 213 --------------------------------RVVFPNFRKSLWF--------------- 225
R++FP R + +
Sbjct: 137 RLAEAAGLAPLPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAP 196
Query: 226 ------DGLKNID---KLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPL----- 271
+GL +D L + P+ V+ G RD E +
Sbjct: 197 GLAFLRNGLWRLDYTPYLTPERRPLYVLVGERDGT------------SYPYAEEVASRLR 244
Query: 272 ----WVPGAGHN-NIEMFEQYLTRLDKFINE 297
+P AGH I+ E + + +
Sbjct: 245 APIRVLPEAGHYLWIDAPEAFEEAFKEALAA 275
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 55.8 bits (135), Expect = 4e-09
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLTR 290
+L +IK+ + G D V HG+ + + + G E +++
Sbjct: 220 ARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDD-ARLHVFSKCGAWAQWEHADEFNRL 278
Query: 291 LDKFINE 297
+ F+
Sbjct: 279 VIDFLRH 285
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 55.9 bits (134), Expect = 4e-09
Identities = 42/210 (20%), Positives = 68/210 (32%), Gaps = 37/210 (17%)
Query: 108 IIYSHGNGCDMGQ--SLATFMDLSARLKCNVLLYDYSGYG-SSTGRASEANLYWDIEAVY 164
I S G L + A V+ D + RA + N D
Sbjct: 99 IAISPGYTGTQSSIAWLGERI---ASHGFVVIAIDTNTTLDQPDSRARQLNAALDYMLTD 155
Query: 165 HTLRLKYNINCDQIILYGQSIGSVPTVYLAS-RVNVAGVILHCALLSALRVVFPNFRKSL 223
+ ++ I+ ++ + G S+G T+ LAS R ++ I
Sbjct: 156 ASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPDLKAAIPLTP---------------- 199
Query: 224 WFDGLKNIDKLPKIKSPVLVIHGTRDEIVDF-SHGMTIYESCPNVVEPLW--VPGAGHN- 279
W I P L+I D I H Y S P+ + + + GA H
Sbjct: 200 WHLN----KSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPTDKAYLELDGASHFA 255
Query: 280 ----NIEMFEQYLTRLDKFINEELMQRYHQ 305
N + + L +F++E+ RY Q
Sbjct: 256 PNITNKTIGMYSVAWLKRFVDED--TRYTQ 283
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 55.1 bits (133), Expect = 6e-09
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLTR 290
+ + K++ P LV+ G D++V + + +P GH IE E +
Sbjct: 216 EFIRKVQVPTLVVQGKDDKVVPVETAYKFLDLIDD-SWGYIIPHCGHWAMIEHPEDFANA 274
Query: 291 LDKFINEELMQR---YHQRQR 308
F++ + H
Sbjct: 275 TLSFLSLRVDITPAAAHHHHH 295
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 54.3 bits (131), Expect = 1e-08
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 207 ALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN 266
L + + + F + + + + P ++ G D++V + + + N
Sbjct: 178 GLQKEDKTFIDQLQNNYSFTFEEKLKNI-NYQFPFKIMVGRNDQVVGYQEQLKLINHNEN 236
Query: 267 VVEPLWVPGAGHN-NIEMFEQYLTRLDKFINE 297
E + + GHN I+ E D F++E
Sbjct: 237 -GEIVLLNRTGHNLMIDQREAVGFHFDLFLDE 267
>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural
genomics, PSI, structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 367
Score = 55.1 bits (132), Expect = 1e-08
Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 15/224 (6%)
Query: 19 RITMNLLSFFNLFCCAGCRPSRMITQCAFFPPRPASYKIIEHGQKKNKCILKMNQKKHAI 78
+ L GC+ S T + ++ + K K+ +K
Sbjct: 14 GALRGAVLAGALMALVGCQTSPAATTSSNTGGTNMQLQLTQEWDKTFPLSAKVEHRKVTF 73
Query: 79 ISRNVFWTTNCKGNKIACIMIPHNEAVF---TIIYSHGNGCDMGQSLATFMDLSARLKCN 135
+R + + +P N I+ G QS + A
Sbjct: 74 ANRY---GITLAAD----LYLPKNRGGDRLPAIVIGGPFGAVKEQSSGLYAQTMAERGFV 126
Query: 136 VLLYDYSGYGSSTGR----ASEANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTV 191
L +D S G S G+ AS D A + L +N ++I + G +
Sbjct: 127 TLAFDPSYTGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMAL 186
Query: 192 YL-ASRVNVAGVILHCALLSALRVVFPNFRKSLWFDGLKNIDKL 234
A V V+ + + +++L
Sbjct: 187 NAVAVDKRVKAVVTSTMYDMTRVMSKGYNDSVTLEQRTRTLEQL 230
Score = 39.7 bits (92), Expect = 9e-04
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 205 HCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESC 264
A+ S + L I ++ P+L+IHG R FS T Y +
Sbjct: 275 PRAVNSGNAWTMTTPLSFMNMPILTYIKEI--SPRPILLIHGERAHSRYFSE--TAYAAA 330
Query: 265 PNVVEPLWVPGAGHNNI--EMFEQYLTRLDKFINEEL 299
E L VPGA H ++ + R+ F +E L
Sbjct: 331 AEPKELLIVPGASHVDLYDRLDRIPFDRIAGFFDEHL 367
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural
genom consortium, NESG, alpha-beta protein, rossmann
fold, HY; 2.10A {Yersinia enterocolitica subsp}
Length = 202
Score = 53.6 bits (128), Expect = 1e-08
Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 37/207 (17%)
Query: 107 TIIYSHG----NGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYWDIEA 162
T++Y HG + +++ + + + EA
Sbjct: 4 TLLYIHGFNSSPSSAKATTFKSWLQ-QHHPHIEMQIPQLP--------------PYPAEA 48
Query: 163 VYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCA-----LLSALRVVFP 217
+ + I + G S+G +L+ R ++ V+++ A LLS
Sbjct: 49 AEMLESIVMDKAGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQ 108
Query: 218 N--------FRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVE 269
N +D + + + ++ T DE++D+ + Y C VE
Sbjct: 109 NPYTGQKYVLESRHIYDLKAMQIEKLESPDLLWLLQQTGDEVLDYRQAVAYYTPCRQTVE 168
Query: 270 PLWVPGAGHNNIEMFEQYLTRLDKFIN 296
G H F+ Y + + F+
Sbjct: 169 ----SGGNH-AFVGFDHYFSPIVTFLG 190
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 53.9 bits (130), Expect = 1e-08
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLTR 290
+L +IK+ L++ G D V G+ + E GH E + +
Sbjct: 223 PRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAG-SELHIFRDCGHWAQWEHADAFNQL 281
Query: 291 LDKFI 295
+ F+
Sbjct: 282 VLNFL 286
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 54.5 bits (131), Expect = 2e-08
Identities = 34/238 (14%), Positives = 63/238 (26%), Gaps = 62/238 (26%)
Query: 107 TIIYSHGNGCDMGQSLATFMD----LSAR----LKCNVLLYDY---SGYGSSTGRASEAN 155
++ +HG + A ++R N Y +GYG +
Sbjct: 426 YVVMAHGGP--TSRVPAVLDLDVAYFTSRGIGVADVN-----YGGSTGYGRAYRERLRGR 478
Query: 156 LYW------DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASR-------VNVAGV 202
W D AV L + + ++ + G S G + V
Sbjct: 479 --WGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVSTDVYACGTVLYPV 536
Query: 203 ILHCALLSALRVVFPNFRKSLWFDGLKNIDKLP-------------KIKSPVLVIHGTRD 249
LL +F + + ++ P +++ P L++ G D
Sbjct: 537 ---LDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLED 593
Query: 250 EIVDFSHGMTIYES-----CPNVVEPLWVPGAGH------NNIEMFEQYLTRLDKFIN 296
+ E+ P L G GH + E L+ +
Sbjct: 594 PVCPPEQCDRFLEAVAGCGVP--HAYLSFEGEGHGFRRKETMVRALEAELSLYAQVFG 649
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 53.4 bits (127), Expect = 2e-08
Identities = 27/205 (13%), Positives = 60/205 (29%), Gaps = 43/205 (20%)
Query: 108 IIYSHGNGCDMGQSLATFM-DLSARLKCNVLLYDYSGYGSSTGRASE------------- 153
++ HG + L + + D G+G +
Sbjct: 59 VLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDAFP 118
Query: 154 ---------ANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLA---SRVNVAG 201
A + D A + + +G S+G++ + + R+ VA
Sbjct: 119 RMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKRIKVA- 175
Query: 202 VILHCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIY 261
++ + + + L P++ PV + DE+V G+ ++
Sbjct: 176 ------------LLGLMGVEGVNGEDLVR--LAPQVTCPVRYLLQWDDELVSLQSGLELF 221
Query: 262 ESCPNVVEPLWVPGAGHNNIEMFEQ 286
+ L V H+ + +E
Sbjct: 222 GKLGTKQKTLHVNPGKHSAVPTWEM 246
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 53.0 bits (128), Expect = 2e-08
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 8/70 (11%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN---VVEPLWVPGAGHN-NIEMFEQY 287
L + P L ++G D +V + + P+ + A H I ++
Sbjct: 190 QPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHSESYI----FAKAAHAPFISHPAEF 245
Query: 288 LTRLDKFINE 297
L
Sbjct: 246 CHLLVALKQR 255
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 53.2 bits (128), Expect = 3e-08
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 13/106 (12%)
Query: 194 ASRVNVAGVILHCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVD 253
+ V G + A +A+ R L + PVL++ G ++V
Sbjct: 218 SGYQPVDGGLRPLASSAAMAQTARGLRSDLV-------PAYRDVTKPVLIVRGESSKLVS 270
Query: 254 FSHGMTIYESCPNV--VEPLWVPGAGHN-NIEMFEQYLTRLDKFIN 296
+ P++ V VPGA H N E L + FI+
Sbjct: 271 AAALAKTSRLRPDLPVVV---VPGADHYVNEVSPEITLKAITNFID 313
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 52.2 bits (125), Expect = 3e-08
Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 37/192 (19%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLK---CNVLLYDYSGYGSSTGRASEANLYWDIE-- 161
++++HG+G ++ L+ LL D +L +DI
Sbjct: 37 IVLFAHGSGSSRYS--PRNRYVAEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLL 94
Query: 162 -----AVYHTLRLKYNINCDQIILYGQSIGSVPTVYLA--SRVNVAGVILHCALLSALRV 214
L + ++ +G S G + A V V+
Sbjct: 95 ASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLAP- 153
Query: 215 VFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVP 274
LP +K+P L+I G D V + E + +P
Sbjct: 154 -----------------SALPHVKAPTLLIVGGYDLPV-IAMNEDALEQLQTSKRLVIIP 195
Query: 275 GAGHNNIEMFEQ 286
A H +FE+
Sbjct: 196 RASH----LFEE 203
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 52.7 bits (127), Expect = 4e-08
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 211 ALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEP 270
V+F + + + + L ++ VLV HG +D IV + + + + E
Sbjct: 199 IQEVMFESMKAGMESLVIPP-ATLGRLPHDVLVFHGRQDRIVPLDTSLYLTKHLKH-AEL 256
Query: 271 LWVPGAGHN-NIEMFEQYLTRLDKFINE 297
+ + GH +E ++ L +
Sbjct: 257 VVLDRCGHWAQLERWDAMGPMLMEHFRA 284
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 52.6 bits (127), Expect = 4e-08
Identities = 40/262 (15%), Positives = 75/262 (28%), Gaps = 85/262 (32%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYW-------D 159
T++ +HG GCD +L + V+++DY G G S + Y D
Sbjct: 30 TVLLAHGFGCDQNMWRFMLPELEKQFT--VIVFDYVGSGQSDLESFSTKRYSSLEGYAKD 87
Query: 160 IEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLA----SRVNVAGVILHCA-------- 207
+E + L L + + G S+ S+ + R+ + + + C
Sbjct: 88 VEEILVALDL------VNVSIIGHSVSSIIAGIASTHVGDRI--SDITMICPSPCFMNFP 139
Query: 208 --------------LLSALRVVFPNFRKSL---------------WF---------DGLK 229
L++ + + + L K
Sbjct: 140 PDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASHSSELIGELSGSFCTTDPIVAK 199
Query: 230 NI----------DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN---VVEPLWVPGA 276
L I +P L+ +D + G + E+ PN + +
Sbjct: 200 TFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIPNSQLEL----IQAE 255
Query: 277 GHN-NIEMFEQYLTRLDKFINE 297
GH ++ L FI
Sbjct: 256 GHCLHMTDAGLITPLLIHFIQN 277
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 52.6 bits (126), Expect = 5e-08
Identities = 32/245 (13%), Positives = 58/245 (23%), Gaps = 59/245 (24%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANL---------- 156
++ G G+ + + D G GS + +
Sbjct: 97 CVVQYIGYN--GGRGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYP 154
Query: 157 ------------------YWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVN 198
+ D ++ ++I++ G S G + +++
Sbjct: 155 GFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK 214
Query: 199 -VAGVILHCALLSALRVVFPN-----------------------FRKSLWFDGLKNIDKL 234
++ L R FR +FDG+ +
Sbjct: 215 KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAAR- 273
Query: 235 PKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHNNIEMFEQY--LTRLD 292
K P L G D I S Y E P H F+ + L
Sbjct: 274 --AKIPALFSVGLMDNICPPSTVFAAYNYYAGPKEIRIYPYNNHEGGGSFQAVEQVKFLK 331
Query: 293 KFINE 297
K +
Sbjct: 332 KLFEK 336
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 52.0 bits (125), Expect = 6e-08
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 216 FPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN---VVEPLW 272
N+ + + + KL +K P + G D + I PN
Sbjct: 199 RLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHDVQCPYIFSCEIANLIPNATLTK---- 254
Query: 273 VPGAGHN-NIEMFEQYLTRLDKF 294
+ HN +E +++ ++
Sbjct: 255 FEESNHNPFVEEIDKFNQFVNDT 277
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 52.0 bits (125), Expect = 7e-08
Identities = 44/280 (15%), Positives = 84/280 (30%), Gaps = 79/280 (28%)
Query: 87 TNCKGNKIAC-IMIPHNEAVFTIIYSHGNGCDMGQSLATFMDLSARLK---CNVLLYDYS 142
N G + C P I SHG G+ + +L+ L V +D+
Sbjct: 41 VNADGQYLFCRYWKPTGTPKALIFVSHG----AGEHSGRYEELARMLMGLDLLVFAHDHV 96
Query: 143 GYGSSTGR----ASEANLYWDIEAVYHTLRLKY-NINCDQIILYGQSIGSVPTVYLASR- 196
G+G S G + D+ +++ Y + + L G S+G + A+
Sbjct: 97 GHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLP---VFLLGHSMGGAIAILTAAER 153
Query: 197 -VNVAGVIL------------HCALLSALRV---VFPN---------------------- 218
+ AG++L + A +V V PN
Sbjct: 154 PGHFAGMVLISPLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYN 213
Query: 219 ---------FRKSLW---FDGLKNI-DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCP 265
+ + + + LPK+ P L++ G+ D + D + E
Sbjct: 214 SDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAK 273
Query: 266 -NVVEPLWVPGAGHNNIEMF-------EQYLTRLDKFINE 297
GA H + ++ ++++
Sbjct: 274 SQDKTLKIYEGAYH---VLHKELPEVTNSVFHEINMWVSQ 310
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 51.6 bits (124), Expect = 8e-08
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
++ +++ PVL+I G D + + ++ P + GH
Sbjct: 224 REVYRLRQPVLLIWGREDRVNPLDGALVALKTIPR-AQLHVFGQCGH 269
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 52.0 bits (125), Expect = 8e-08
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 219 FRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
F ID+LP + +PVLVI G DE + P+ V PG H
Sbjct: 244 FHVVGTLGDWSVIDRLPDVTAPVLVIAGEHDEATP-KTWQPFVDHIPD-VRSHVFPGTSH 301
Query: 279 N-NIEMFEQYLTRLDKFINE 297
++E E++ + +F+++
Sbjct: 302 CTHLEKPEEFRAVVAQFLHQ 321
Score = 38.9 bits (91), Expect = 0.001
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 23/113 (20%)
Query: 112 HGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYW-------DIEAVY 164
HG +A L+ V+ YD G G+ST +W + AV
Sbjct: 61 HGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNSTHLPDAPADFWTPQLFVDEFHAVC 120
Query: 165 HTLRLKYNINCDQIILYGQSIGSVPTVYLASRV------NVAGVILHCALLSA 211
L + ++ + GQS G L + + + + + + S
Sbjct: 121 TALGI------ERYHVLGQSWGG----MLGAEIAVRQPSGLVSLAICNSPASM 163
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 51.2 bits (123), Expect = 1e-07
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN---VVEPLWVPGAGHN-NIEMFEQY 287
I +PVLVI D + G + ++ PN + +P AGH E E
Sbjct: 225 PAYRNIAAPVLVIGFADDVVTPPYLGREVADALPNGRYLQ----IPDAGHLGFFERPEAV 280
Query: 288 LTRLDKFINE 297
T + KF
Sbjct: 281 NTAMLKFFAS 290
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 51.3 bits (122), Expect = 1e-07
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 201 GVILHCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTI 260
V L + N + F I + ++ + I G R + + +
Sbjct: 252 PVRTKMEQAQNLLC-YMNMQTFAPFL----ISNVKFVRKRTIHIVGARSNWCPPQNQLFL 306
Query: 261 YESCPNVVEPLWVPGAGHN-NIEMFEQYLTRLDKFINEELMQRYHQRQRCTESS 313
++ N +PG H N+E + + R++ I+E ++ Q + +
Sbjct: 307 QKTLQN-YHLDVIPGGSHLVNVEAPDLVIERINHHIHEFVLTSPLQSSHIPQLT 359
Score = 38.2 bits (88), Expect = 0.002
Identities = 21/165 (12%), Positives = 44/165 (26%), Gaps = 18/165 (10%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLKCN------VLLYDYSGYGSSTGRASEANL---- 156
+++ HG+G L A VLL D +G S + L
Sbjct: 54 NLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDS-AVRNRGRLGTNF 112
Query: 157 YW-----DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASR--VNVAGVILHCALL 209
W D+ + + + ++ G S+G + +IL ++
Sbjct: 113 NWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVV 172
Query: 210 SALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDF 254
+ + + ++ E V +
Sbjct: 173 ITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKY 217
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 50.7 bits (122), Expect = 1e-07
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIY-ESCPNVVEPLWVPGAGHN-NIEMFEQYLT 289
+ L I+ PVLV+HG D+IV + + + + PN G H +
Sbjct: 210 EDLKGIQQPVLVMHGDDDQIVPYENSGVLSAKLLPN-GALKTYKGYPHGMPTTHADVINA 268
Query: 290 RLDKFI 295
L FI
Sbjct: 269 DLLAFI 274
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 50.8 bits (122), Expect = 2e-07
Identities = 42/280 (15%), Positives = 81/280 (28%), Gaps = 79/280 (28%)
Query: 87 TNCKGNKIAC-IMIPHNEAVFTIIYSHGNGCDMGQSLATFMDLSARLK---CNVLLYDYS 142
N G + C P I SHG G+ + +L+ L V +D+
Sbjct: 23 VNADGQYLFCRYWAPTGTPKALIFVSHG----AGEHSGRYEELARMLMGLDLLVFAHDHV 78
Query: 143 GYGSSTGR----ASEANLYWDIEAVYHTLRLKY-NINCDQIILYGQSIGSVPTVYLASR- 196
G+G S G + D+ +++ Y + + L G S+G + A+
Sbjct: 79 GHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLP---VFLLGHSMGGAIAILTAAER 135
Query: 197 -VNVAGVILHCALLSALRVVFPNFRKSLW------------------------------- 224
+ AG++L L+ A F+
Sbjct: 136 PGHFAGMVLISPLVLANPESATTFKVLAAKVLNSVLPNLSSGPIDSSVLSRNKTEVDIYN 195
Query: 225 ------------------FDGLKNI-DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCP 265
+ + + LPK+ P L++ G+ D + D + E
Sbjct: 196 SDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAK 255
Query: 266 -NVVEPLWVPGAGHNNIEMF-------EQYLTRLDKFINE 297
GA H + ++ ++++
Sbjct: 256 SQDKTLKIYEGAYH---VLHKELPEVTNSVFHEINMWVSQ 292
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 50.9 bits (121), Expect = 2e-07
Identities = 32/279 (11%), Positives = 73/279 (26%), Gaps = 85/279 (30%)
Query: 107 TIIYSHGNGCDMGQSLAT---FMDLSARLKCN------VLLYDYSGYGSSTGRASEANLY 157
+++ G +SL + F +L+ L+ + + G G
Sbjct: 40 CVLWVGG----QTESLLSFDYFTNLAEELQGDWAFVQVEVPSGKIGSGPQD-------HA 88
Query: 158 WDIEAVYHTLR-LKYNINCDQIILYGQSIGSVPTVYLASRVN----VAGVILHCAL---- 208
D E V + L + +++ L+ S G+ L + VILH +
Sbjct: 89 HDAEDVDDLIGILLRDHCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPE 148
Query: 209 --------------------------------------LSALRV---VFPN-----FRKS 222
++ R+ FP +
Sbjct: 149 NPLFTPEGCAARKEHVEKLMAEGRGEDSLAMLKHYDIPITPARLAGGGFPTLQEAVWNPC 208
Query: 223 LWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESC------PNVVEPLWVPGA 276
+ + + IK P+L++ + + N V +
Sbjct: 209 IRKEFDVLRRSVGVIKVPLLLMLAHNVQYKPSDEEVGTVLEGVRDHTGCNRVTVSYFNDT 268
Query: 277 GHNNIEMF----EQYLTRLDKFINEELMQRYHQRQRCTE 311
+ +++ + +F+ +E R +
Sbjct: 269 CDELRRVLKAAESEHVAAILQFLADEDEFRTETEKNNRI 307
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 192 YLASRVNVAGVILHCALLSALRVVFPNFRKSLWFDGLKNI---DKLPKIKSPVLVIHGTR 248
+ +N GVI LL + F + +D +I +K+P P L I G
Sbjct: 148 IMRQHLNEEGVIQ--FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGN 205
Query: 249 DEIVDFSHGMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLTRLDKFINE 297
V + + P + GAGH + E + L + +++N+
Sbjct: 206 SPYVSEQYRDDLLAQFPQ-ARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 51.0 bits (122), Expect = 2e-07
Identities = 34/226 (15%), Positives = 69/226 (30%), Gaps = 49/226 (21%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLKCN---VLLYDY---SGYGSSTGRASEANL---- 156
T++ HG + ++ +A L V++ +Y +GYG +
Sbjct: 362 TVVLVHGGP--FAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGE 419
Query: 157 YWDIEAVYHTLRLKYNINCDQIILYGQS---------IGSVPTVYLASRVNVAGVILHCA 207
D+ A R ++ + G S + P ++ A V A V+
Sbjct: 420 LEDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAG-VAGASVV---D 473
Query: 208 LLSALRVVFPNFRKSLWFDGLKNIDKL----P-----KIKSPVLVIHGTRDEIVDFSHGM 258
+ FR + + + + P +IK P+ +IH +
Sbjct: 474 WEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLL 533
Query: 259 TIYES-----CPNVVEPLWVPGAGH------NNIEMFEQYLTRLDK 293
+ E +P AGH + +++ + L
Sbjct: 534 RLMGELLARGKT--FEAHIIPDAGHAINTMEDAVKILLPAVFFLAT 577
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 49.7 bits (119), Expect = 4e-07
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSH-GMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLT 289
L K P L+IHG D V F + G +E+ PN + + G H N +++
Sbjct: 215 KDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIPN-SKVALIKGGPHGLNATHAKEFNE 273
Query: 290 RLDKFINE 297
L F+ +
Sbjct: 274 ALLLFLKD 281
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 48.8 bits (117), Expect = 6e-07
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSH-GMTIYESCPNVVEPLWVPGAGHNNIEMFEQYLTR 290
+P+I P L++HGT D + + +++ P+ E + V GA H + T
Sbjct: 211 ADIPRIDVPALILHGTGDRTLPIENTARVFHKALPS-AEYVEVEGAPHG---LL---WTH 263
Query: 291 LDKFINEELMQ 301
++ N L+
Sbjct: 264 AEEV-NTALLA 273
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 48.5 bits (116), Expect = 7e-07
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSH-GMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLT 289
+ L KI P LV+HG D++V G+ GA H +Q
Sbjct: 207 EDLKKIDVPTLVVHGDADQVVPIEASGIASAALVKG-STLKIYSGAPHGLTDTHKDQLNA 265
Query: 290 RLDKFI 295
L FI
Sbjct: 266 DLLAFI 271
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 48.0 bits (115), Expect = 1e-06
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN---VVEPLWVPGAGHN-NIEMFEQY 287
+ L K+ P L++ D I + G +++ P + GH ++ ++
Sbjct: 204 EDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQ----MEARGHCPHMSHPDET 259
Query: 288 LTRLDKFI 295
+ + ++
Sbjct: 260 IQLIGDYL 267
Score = 33.7 bits (78), Expect = 0.051
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 21/112 (18%)
Query: 107 TIIYSHGNGCDMG--QSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYW------ 158
+I+++ G GCD ++A + V+L+DY G G S RA + N Y
Sbjct: 22 SIMFAPGFGCDQSVWNAVAPA--FEEDHR--VILFDYVGSGHSDLRAYDLNRYQTLDGYA 77
Query: 159 -DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRV--NVAGVILHCA 207
D+ V L L + + G S+G++ + + R + +++
Sbjct: 78 QDVLDVCEALDL------KETVFVGHSVGALIGMLASIRRPELFSHLVMVGP 123
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 48.0 bits (115), Expect = 1e-06
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSH-GMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLT 289
D L +I PVLV HGT D++V ++ E N G H E
Sbjct: 209 DDLKRIDVPVLVAHGTDDQVVPYADAAPKSAELLAN-ATLKSYEGLPHGMLSTHPEVLNP 267
Query: 290 RLDKFI 295
L F+
Sbjct: 268 DLLAFV 273
>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP:
c.69.1.16
Length = 262
Score = 47.4 bits (112), Expect = 2e-06
Identities = 32/209 (15%), Positives = 74/209 (35%), Gaps = 37/209 (17%)
Query: 108 IIYSHGNGCDMGQS--LATFMDLSARLKCNVLLYDYSGYGSS-TGRASEANLYWDIEAVY 164
++ S G L + A V D + R + L ++ +
Sbjct: 57 VVISPGFTAYQSSIAWLGPRL---ASQGFVVFTIDTNTTLDQPDSRGRQ--LLSALDYLT 111
Query: 165 HTLRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSLW 224
++ ++ ++ + G S+G ++ A + + ++
Sbjct: 112 QRSSVRTRVDATRLGVMGHSMGGGGSLEAAKS-------------------RTSLKAAIP 152
Query: 225 FDGLKNIDKLPKIKSPVLVIHGTRDEIVDF-SHGMTIYESCPNVVEPLW--VPGAGH--- 278
G P++++P LV+ D + +H YES P ++ + + GA H
Sbjct: 153 LTGWNTDKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTP 212
Query: 279 --NNIEMFEQYLTRLDKFINEELMQRYHQ 305
++ + + ++ L +FI+ + RY Q
Sbjct: 213 NTSDTTIAKYSISWLKRFIDSD--TRYEQ 239
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 48.3 bits (115), Expect = 2e-06
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSH-GMTIYESCPNVVEPLWVPGAGHNNIEMFEQYLTR 290
+P+I P L++HGT D + + +++ P+ E + V GA H + T
Sbjct: 212 ADIPRIDVPALILHGTGDRTLPIENTARVFHKALPS-AEYVEVEGAPHG---LL---WTH 264
Query: 291 LDKFINEEL---MQRYHQRQR 308
++ N L + + + Q+
Sbjct: 265 AEEV-NTALLAFLAKALEAQK 284
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 46.9 bits (112), Expect = 3e-06
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSH-GMTIYESCPN---VVEPLWVPGAGHNNIEMFEQY 287
+ KI P LVIHG D+IV F G E V A H
Sbjct: 205 PDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKV----YKDAPHG---FA--- 254
Query: 288 LTRLDKFINEELMQ 301
+T + NE+L+
Sbjct: 255 VTHAQQL-NEDLLA 267
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 47.2 bits (111), Expect = 4e-06
Identities = 35/281 (12%), Positives = 76/281 (27%), Gaps = 70/281 (24%)
Query: 95 ACIMIPHNEA--VFTIIYSHGNG-----------------CDMGQSLATFMDLSARLKCN 135
++ P + V ++ G+G D + +
Sbjct: 102 FLVLKPEHLKGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYV 161
Query: 136 VLLYDYSGYGSS-----------------------TGRASEANLYWDIEAVYHTLRLKYN 172
+ D + G + G + + V + ++ +
Sbjct: 162 AVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSY 221
Query: 173 INCDQIILYGQSIGSVPTVYLASRVN-VAGVILHCALLS-------------ALRVVFPN 218
I D+I++ G S+G+ P + L + + + L R FPN
Sbjct: 222 IRKDRIVISGFSLGTEPMMVLGVLDKDIYAFVYNDFLCQTQERAVVMTKPDKENRRPFPN 281
Query: 219 FRKSLWFDGLKNIDKLPKIKS-----PVLVIHGTRDEIVDFSHGMTIYES--CPNVVEPL 271
+ L + + P + + P++ G D + Y + P E
Sbjct: 282 SIRHLIPGYWRYFN-FPDVVASLAPRPIIFTEGGLDRDFRLV--QSAYAASGKPENAEFH 338
Query: 272 WVPGAGH----NNIEMFEQYLTRLDKFINEELMQRYHQRQR 308
P ++E ++ L F + H +
Sbjct: 339 HYPKFADKAVRKDVEHLDEGLDSKTYFEAVNVDPPSHYFKN 379
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 45.9 bits (109), Expect = 4e-06
Identities = 19/183 (10%), Positives = 53/183 (28%), Gaps = 34/183 (18%)
Query: 97 IMIPHNEAVFTIIYSHG---NGCDM---GQSL---ATFMDLSARLKCNVLL--YDYSGYG 145
+ + + ++ H + + + + + + R+ + + G G
Sbjct: 8 VFKAGRKDLAPLLLLHSTGGDEHQLVEIAEMIAPSHPILSIRGRINEQGVNRYFKLRGLG 67
Query: 146 SSTGRAS-EANLYWDIEAVYHT---LRLKYNINCDQIILYGQSIGSVPTVYLASR--VNV 199
T +L + + + L K++++ ++I G S G+ + + R +N
Sbjct: 68 GFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINF 127
Query: 200 AGVILHCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMT 259
+I + V + + D IV +
Sbjct: 128 DKIIAFHGMQLEDFEQTVQLDDK-----------------HVFLSYAPNDMIVPQKNFGD 170
Query: 260 IYE 262
+
Sbjct: 171 LKG 173
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 46.6 bits (111), Expect = 4e-06
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 224 WFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGM-TIYESCPN---VVEPLWVPGAGHN 279
F + ++L + P+L++ G + I D + P+ V + AGH
Sbjct: 232 GFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSFVPDIEAEV----IKNAGHV 287
Query: 280 -NIEMFEQYLTRLDKFIN 296
++E R+ +F N
Sbjct: 288 LSMEQPTYVNERVMRFFN 305
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 47.0 bits (111), Expect = 4e-06
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 27/149 (18%)
Query: 159 DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVN--VAGVILHCALLSALRVVF 216
+ + L +YNI+ ++I + G S+G T A I C
Sbjct: 246 AVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPIC---------- 295
Query: 217 PNFRKSLWFDGLKNIDKLPKIKS-PVLVIHGTRDEIVDFSHGMTIYESCPNV---VEPLW 272
G ++ K+ +IK P+ V H D +V + + + + V
Sbjct: 296 ----------GGGDVSKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTE 345
Query: 273 VPGAGHNNIEMFEQYLTRLDKFINEELMQ 301
+ + + N+E ++
Sbjct: 346 YEKGFMEKHGWDPHG-SWIPTYENQEAIE 373
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 46.2 bits (110), Expect = 4e-06
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 7/50 (14%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN---VVEPLWVPGAGH 278
+ I P LV+ G + ++ PN V + H
Sbjct: 200 ARFASISIPTLVMDGGASPAWIRHTAQELADTIPNARYVT----LENQTH 245
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 46.1 bits (110), Expect = 5e-06
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN---VVEPLWVPGAGHN-NIEMFEQY 287
+I+ PV +I + D +V + ++ + P+ +V +P GH N+ E +
Sbjct: 194 HHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMV----MPYGGHACNVTDPETF 249
Query: 288 LTRLDKFI 295
L +
Sbjct: 250 NALLLNGL 257
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 46.3 bits (110), Expect = 5e-06
Identities = 28/164 (17%), Positives = 47/164 (28%), Gaps = 30/164 (18%)
Query: 157 YWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVN-----VAGVILHCALLSA 211
Y D + ++ +I + G S G T+ A+ + VA A
Sbjct: 154 YLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERA 213
Query: 212 LRVVFP---------------------NFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDE 250
+ V + +FD + D+ +K PVL+ G D+
Sbjct: 214 IDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADR---VKVPVLMSIGLIDK 270
Query: 251 IVDFSHGMTIYESCPNVVEPLWVPGAGHNNI-EMFEQYLTRLDK 293
+ S Y E GH I + L +
Sbjct: 271 VTPPSTVFAAYNHLETKKELKVYRYFGHEYIPAFQTEKLAFFKQ 314
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 45.7 bits (109), Expect = 7e-06
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN--VVEPLWVPGAGH-NNIEMFEQYL 288
+ P IK P LVI GT D + G + ++ V A H +NIE + +
Sbjct: 200 PEAPGIKVPALVISGTHDLAATPAQGRELAQAIAGARYV----ELDASHISNIERADAFT 255
Query: 289 TRLDKFINEE 298
+ F+ E+
Sbjct: 256 KTVVDFLTEQ 265
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 45.4 bits (108), Expect = 9e-06
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDF-SHGMTIYESCPNVVEPLWVPGAGHN---NIEMFEQY 287
+ L K P LV+HG D++V + G + PN E G+ H E++
Sbjct: 206 EDLKKFDIPTLVVHGDDDQVVPIDATGRKSAQIIPN-AELKVYEGSSHGIAMVPGDKEKF 264
Query: 288 LTRLDKFINE 297
L +F+N+
Sbjct: 265 NRDLLEFLNK 274
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 45.3 bits (108), Expect = 1e-05
Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 23/80 (28%)
Query: 231 IDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPL---W-------VPGAGHN- 279
DK+ IK P L+ G DE+ PNV + H
Sbjct: 226 TDKISAIKIPTLITVGEYDEV------------TPNVARVIHEKIAGSELHVFRDCSHLT 273
Query: 280 NIEMFEQYLTRLDKFINEEL 299
E E Y L FI + L
Sbjct: 274 MWEDREGYNKLLSDFILKHL 293
Score = 34.1 bits (79), Expect = 0.039
Identities = 22/88 (25%), Positives = 28/88 (31%), Gaps = 16/88 (18%)
Query: 107 TIIYSHG---NGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYW----D 159
++ HG D SL VL YD G G S +
Sbjct: 30 KLMTMHGGPGMSHDYLLSLRDMTKEGIT----VLFYDQFGCGRSEEPDQSKFTIDYGVEE 85
Query: 160 IEAVYHTLRLKYNINCDQIILYGQSIGS 187
EA LR K N +++ L G S G
Sbjct: 86 AEA----LRSKLFGN-EKVFLMGSSYGG 108
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 45.1 bits (107), Expect = 1e-05
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 224 WFDGLKNIDKLPKIKSPVLVIHGTRDEIVDF-SHGMTIYESCPNVVEPLWVPGAGHNNIE 282
+ ++ + P L++HGT+D I+ + +++ P + + V GA H
Sbjct: 208 FRSDVEAVRA---AGKPTLILHGTKDNILPIDATARRFHQAVPE-ADYVEVEGAPHG--- 260
Query: 283 MFEQYLTRLDKFINEELMQ 301
+ T D+ N L
Sbjct: 261 LL---WTHADEV-NAALKT 275
>1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region;
esterase, lipase, serine hydrolase, structural genomics;
HET: LI5; 1.70A {Saccharomyces cerevisiae}
Length = 243
Score = 43.4 bits (101), Expect = 3e-05
Identities = 19/177 (10%), Positives = 51/177 (28%), Gaps = 17/177 (9%)
Query: 139 YDYSGYGSSTGRASEANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVN 198
+ + SE + DI ++ N + G S G+ + + ++++
Sbjct: 65 TLDADVNRAWFYHSEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKIS 124
Query: 199 --------VAGVILHCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDE 250
++ + + P +K+ ++ I+G D+
Sbjct: 125 ELVPDHPQFKVSVVISGYSFTEPDPEHPGELRITEKFRDSFAVKPDMKTKMIFIYGASDQ 184
Query: 251 IVDFSHGMTIYESCPNVVEP------LWVPGAGH---NNIEMFEQYLTRLDKFINEE 298
V +Y+ + GH N ++ + ++ + E
Sbjct: 185 AVPSVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNKKDIIRPIVEQITSSLQEA 241
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 42.8 bits (101), Expect = 5e-05
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 170 KYNINCDQIILYGQSIG---SVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSLWFD 226
+ I+ +I L G S G T ++ + + GVI S +
Sbjct: 100 RTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIAL----------------STYAP 143
Query: 227 GLKNIDKLPKIKS--PVLVIHGTRDEIVDFSHGMTIYE 262
+ +L + P L +HG D++V + G + +E
Sbjct: 144 TFGDELELSASQQRIPALCLHGQYDDVVQNAMGRSAFE 181
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 42.4 bits (100), Expect = 6e-05
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 23/116 (19%)
Query: 150 RASEANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASR---VNVAGVILHC 206
AS + I+ I ++IIL G S G ++ A R + GV+
Sbjct: 95 NASADQVIALIDEQ-----RAKGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALS 149
Query: 207 ALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYE 262
P F + K I PVL +HG++D++VD + G ++
Sbjct: 150 TYA-------PTFDDLALDERHKRI--------PVLHLHGSQDDVVDPALGRAAHD 190
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 43.5 bits (103), Expect = 6e-05
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 230 NIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEP---LWVPGAGHNNIEMFEQ 286
+ + ++SP+L+IHG D+ V F++ ++ + +P + PGA H
Sbjct: 666 VLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADAL 725
Query: 287 YL-TRLDKFINEEL 299
+ + F+ L
Sbjct: 726 HRYRVAEAFLGRCL 739
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 42.8 bits (101), Expect = 7e-05
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 240 PVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLTRLDKFINE 297
P+ I E E P + G H I++ ++ + +F
Sbjct: 214 PIRHIFSQPTEPEYEKINSDFAEQHPW-FSYAKLGGPTHFPAIDVPDRAAVHIREFATA 271
>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural
genomics, joint cente structural genomics, JCSG; HET:
MSE; 1.15A {Legionella pneumophila subsp}
Length = 377
Score = 43.0 bits (100), Expect = 8e-05
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 236 KIKSPVLVIHGTRDEIVDFSHGMTIYESC----PNVVEPLWVPGAGHNNIEMF--EQYLT 289
K +P+L++ D V ++ Y S V H F ++ +
Sbjct: 305 KPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSDFVWIKSVSDALDHVQAHPFVLKEQVD 364
Query: 290 RLDKFINEELM 300
+F +E M
Sbjct: 365 FFKQFERQEAM 375
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 42.2 bits (99), Expect = 8e-05
Identities = 23/166 (13%), Positives = 44/166 (26%), Gaps = 31/166 (18%)
Query: 100 PHNEAVFTIIYSHG---NGCDMGQSLATFMDLSAR---LKCNVLLYD-YSGYG-SSTGRA 151
E+ + HG + + LA + +A + + D + + R
Sbjct: 25 AGKESRECLFLLHGSGVDETTL-VPLARRIAPTATLVAARGRIPQEDGFRWFERIDPTRF 83
Query: 152 SEANLYWDIEAVYHTLR---LKYNINCDQIILYGQSIGSVPTVYLASR--VNVAGVILHC 206
+ ++ + A ++ +N D G S G+ L V L
Sbjct: 84 EQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLR 143
Query: 207 ALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIV 252
+ V + L+I G DE
Sbjct: 144 PMPVLDHVPATDLAGI-----------------RTLIIAGAADETY 172
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 42.5 bits (100), Expect = 9e-05
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 16/83 (19%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPL---------------WVPGA 276
+L +++ P L++ G +D P
Sbjct: 232 YELDRLQMPTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDL 291
Query: 277 GHN-NIEMFEQYLTRLDKFINEE 298
GH I+ E++ L + + +
Sbjct: 292 GHTPQIQAPERFHQALLEGLQTQ 314
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 42.4 bits (100), Expect = 1e-04
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
D + + +P+ ++ G V ++ + V +GH
Sbjct: 263 DDVDALSAPITLVRGGSSGFVTDQDTAELHRRATHFRGVHIVEKSGH 309
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 42.8 bits (101), Expect = 1e-04
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 230 NIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEP---LWVPGAGHNNIEMFEQ 286
+ + +K +++IHG D +V + H + ++C P HN +
Sbjct: 633 LLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGPDRV 692
Query: 287 YL-TRLDKFINEEL 299
+L + ++ + L
Sbjct: 693 HLYETITRYFTDHL 706
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 41.0 bits (96), Expect = 2e-04
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 19/106 (17%)
Query: 159 DIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVN--VAGVILHCALLSALRVVF 216
++ +Y + + I+ G S G+ L + G +LH ++ +
Sbjct: 102 ELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRGMQL 161
Query: 217 PNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYE 262
N V + GT D I + +
Sbjct: 162 ANLAGK-----------------SVFIAAGTNDPICSSAESEELKV 190
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 41.2 bits (97), Expect = 2e-04
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 235 PKIKSPVLVIHGTRDEIVDFSHGMTIYES------CPNVVEPLWVPGAGH 278
++K P I G D + + P + E + + GA H
Sbjct: 258 AQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAH 307
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 40.8 bits (95), Expect = 3e-04
Identities = 26/225 (11%), Positives = 57/225 (25%), Gaps = 59/225 (26%)
Query: 107 TIIYSHGNG--------CDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYW 158
+IY HG D Q T + +Y + E
Sbjct: 43 AVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYR-------LSPEITNPR 95
Query: 159 DIEAVYHTLR-LKYNINCDQIILYGQSIGSVPTVYLASRVN------------------- 198
++ + L I + G S+G+ + + +
Sbjct: 96 NLYDAVSNITRLVKEKGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQI 155
Query: 199 VAGVILHCAL--LSALRVVFPNFR----------KSLWFDGLKNI-----DKLPKIKSPV 241
V V L + L L + +P + ++ + + L + +
Sbjct: 156 VKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDM 215
Query: 242 LVIHGTRDEIVDFSHGMTIYE-----SCPNVVEPLWVPGAGHNNI 281
++H DE++ + + HN++
Sbjct: 216 HLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYL--DDLGLHNDV 258
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 39.9 bits (93), Expect = 5e-04
Identities = 27/193 (13%), Positives = 48/193 (24%), Gaps = 33/193 (17%)
Query: 100 PHNEAVFTIIYSHG---NGCDMGQSLATFMDLSARLKCNVLLYDYSGYG-----SSTGRA 151
+ HG + + A + V G + G
Sbjct: 57 AGVAGAPLFVLLHGTGGDENQF-FDFGARLLPQATILSPVGDVSEHGAARFFRRTGEGVY 115
Query: 152 SEANLYWDIEAVYHTLR-LKYNINCDQIILYGQSIGSVPTVYLASR--VNVAGVILHCAL 208
+L + ++ + + +I G S G+ + +L L
Sbjct: 116 DMVDLERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPL 175
Query: 209 LSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYE---SCP 265
+ + VL+ G RD I + E +
Sbjct: 176 I---------PFEPKISPAKPTR--------RVLITAGERDPICPVQLTKALEESLKAQG 218
Query: 266 NVVEPLWVPGAGH 278
VE +W PG GH
Sbjct: 219 GTVETVWHPG-GH 230
>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine
hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo
sapiens} SCOP: c.69.1.14
Length = 232
Score = 39.8 bits (93), Expect = 6e-04
Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 24/136 (17%)
Query: 150 RASEANLYWDIEAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASR--VNVAGVILHCA 207
+ + N+ I+ +K I ++IIL G S G ++Y A +AGV
Sbjct: 92 KQAAENIKALIDQE-----VKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSC 146
Query: 208 LLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNV 267
L R S + ++ +L HG D +V G E +
Sbjct: 147 WL--------PLRASFPQGPIGGANRDI----SILQCHGDCDPLVPLMFGSLTVEKLKTL 194
Query: 268 VEPLWV-----PGAGH 278
V P V G H
Sbjct: 195 VNPANVTFKTYEGMMH 210
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 40.0 bits (93), Expect = 6e-04
Identities = 21/148 (14%), Positives = 43/148 (29%), Gaps = 21/148 (14%)
Query: 61 GQKKNKCILKMNQKKHAIISRNVFWTTNCKGNKIACIMIPHNEAVFTIIYSHGNGCDMGQ 120
GQ+ + + K+ +T + +GN ++ G G
Sbjct: 10 GQQMGRGSMAALNKEMVNTLLGPIYTCHREGNP-------------CFVFLSGAGF--FS 54
Query: 121 SLATFMDLSARLKCN--VLLYDYSGYGSSTGRASEANLYWDIEAVYHTLRLKYNINCDQI 178
+ F ++ +L + +L D G S D + +
Sbjct: 55 TADNFANIIDKLPDSIGILTIDAPNSGYSPVSNQANVGLRDWVNAILMIFEHFKF--QSY 112
Query: 179 ILYGQSIGSVPTVYLASRV--NVAGVIL 204
+L SIG + + ++ G I
Sbjct: 113 LLCVHSIGGFAALQIMNQSSKACLGFIG 140
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
hydrolase; 1.72A {Homo sapiens}
Length = 239
Score = 39.4 bits (92), Expect = 7e-04
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 169 LKYNINCDQIILYGQSIGSVPTVYLASR--VNVAGVILHCALLSALRVVFPNFRKSLWFD 226
+K I ++I++ G S+G ++LA R +VAGV + L N +++
Sbjct: 111 VKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFL--------NKASAVYQA 162
Query: 227 GLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYE 262
K+ LP + HGT DE+V S
Sbjct: 163 LQKSNGVLP----ELFQCHGTADELVLHSWAEETNS 194
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 39.1 bits (92), Expect = 8e-04
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH-NNIEMFEQYLTR 290
+L +I+ P LVI G D + SHG I S L A H +N+E + +
Sbjct: 202 AQLARIERPTLVIAGAYDTVTAASHGELIAASIAGAR--LVTLPAVHLSNVEFPQAFEGA 259
Query: 291 LDKFI 295
+ F+
Sbjct: 260 VLSFL 264
Score = 29.5 bits (67), Expect = 1.2
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLK--CNVLLYDYSGYGSS---TGRASEANLYWDIE 161
+ S+ +G +L + L VL YD G+G+S G + A L D+
Sbjct: 29 LLALSNS----IGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVL 84
Query: 162 AVYHTLRLKYNINCDQIILYGQSIG 186
+ L + + G S+G
Sbjct: 85 ELLDALEV------RRAHFLGLSLG 103
>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural
mycobacterium tuberculosis structural proteomics
project, X hydrolase; 2.10A {Mycobacterium tuberculosis}
PDB: 2zjf_A*
Length = 356
Score = 39.2 bits (91), Expect = 0.001
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 235 PKIKSPVLVIHGTRDEIVDFSHGMTIY--ESCPNVVEPLWVPGAGH 278
+ P L I G D + E PN + GH
Sbjct: 288 KPLTPPALFIGGQYDVGTIWGAQAIERAHEVMPNYRGTHMIADVGH 333
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 40/324 (12%), Positives = 95/324 (29%), Gaps = 108/324 (33%)
Query: 51 RPASYKIIEHGQK-KNKCILKM----NQKKHAIISRNVFWTT--NCKGNKIACIMIPHNE 103
RPA ++ G K + + + K + +FW NC N ++ +
Sbjct: 148 RPAKN-VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC--NSPETVLEMLQK 204
Query: 104 AVFTIIYSHGNGCDMGQSL-ATFMDLSARLK--------CNVLL-YDYSGYGSSTGRASE 153
++ I + + D ++ + A L+ N LL
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL------------- 251
Query: 154 ANLYWDIEAVYHTLRLKYNINCDQII-----------LYGQSIGSVPTV----------- 191
N+ + +A +N++C +I+ L + +
Sbjct: 252 -NV-QNAKAWNA-----FNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 192 --YLASRVNV----------AGVILHCALLSALRVVFPNFRKSLWFDGLK--NIDKLPK- 236
L ++ ++++ W D K N DKL
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA----TW-DNWKHVNCDKLTTI 358
Query: 237 IKSPVLVIHGTRDEIVDFSHGMTIYESC----------PNVVEPLWVPGAGHNNIEMFEQ 286
I+S + V+ E ++ +++ ++ +W + I+
Sbjct: 359 IESSLNVL-----EPAEYRK---MFDRLSVFPPSAHIPTILLSLIW-----FDVIKSDVM 405
Query: 287 YLTRLDKFINEELMQRYHQRQRCT 310
+ ++K L+++ + +
Sbjct: 406 VV--VNKLHKYSLVEKQPKESTIS 427
Score = 36.4 bits (83), Expect = 0.013
Identities = 36/270 (13%), Positives = 82/270 (30%), Gaps = 75/270 (27%)
Query: 62 QKKNKCILKMNQKKHAIIS-----------RNVFWTTNCKGNKIACIMIPHNEA----VF 106
Q + K IL + + A + +++ I IM + +F
Sbjct: 15 QYQYKDILSVFED--AFVDNFDCKDVQDMPKSILSKEEID--HI--IMSKDAVSGTLRLF 68
Query: 107 TIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSSTGRASEANLYWDIEAVYHT 166
+ S + + F++ VL +Y + + T
Sbjct: 69 WTLLSKQE-----EMVQKFVE-------EVLRINYK---------------FLMSP-IKT 100
Query: 167 LRLKYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSLWFD 226
+ + ++ I + + V+ ++ NV+ + + L AL + P K++ D
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVSRLQPYLKLRQALLELRPA--KNVLID 156
Query: 227 GLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHNN-----I 281
G+ K + + + V I+ W+ + N +
Sbjct: 157 GVLGSGK-----T-WVALDVCLSYKVQCKMDFKIF----------WL-NLKNCNSPETVL 199
Query: 282 EMFEQYLTRLDKFINEELMQRYHQRQRCTE 311
EM ++ L ++D + + R
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Score = 34.8 bits (79), Expect = 0.037
Identities = 50/342 (14%), Positives = 98/342 (28%), Gaps = 101/342 (29%)
Query: 3 NFGKCKQLV--QFQTGID--------RITMNLLSF-F------NLFC-CAGCRPSRMITQ 44
N CK L+ +F+ D I+++ S +L CRP +
Sbjct: 263 NLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--- 318
Query: 45 CAFFPPR-----PASYKIIEHGQKKNKCI------LKMNQKKHAI-ISRNVFWTTNCKGN 92
P P II + + ++ I S NV +
Sbjct: 319 ----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 93 KIACIMIPHN----EAVFTIIYSHGNGCDMGQSLATFMDLSARLKCNVLLYDYSGYGSST 148
+ P + + ++I+ D+ + S ++ S
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPS--- 430
Query: 149 GRASEANLYWDI------EAVYH-TLRLKYNINCDQIILYGQSIGSVPTV--YLASRVNV 199
+Y ++ E H ++ YNI + P + Y S +
Sbjct: 431 -------IYLELKVKLENEYALHRSIVDHYNIPKT----FDSDDLIPPYLDQYFYSHI-- 477
Query: 200 AG----VILHCALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFS 255
G I H ++ R+VF +FR + L+ K+ + + +
Sbjct: 478 -GHHLKNIEHPERMTLFRMVFLDFR---F---LEQ--KIRHDSTAWNASGSILNTLQQLK 528
Query: 256 HGMTIYES--CPNVVEPLWVPGAGHNNIEMFEQYLTRLDKFI 295
Y+ C N +P +E+ + + F+
Sbjct: 529 ----FYKPYICDN--DPK------------YERLVNAILDFL 552
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold;
1.90A {Plesiocystis pacifica}
Length = 297
Score = 38.2 bits (89), Expect = 0.002
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 240 PVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
P + G +D ++ + ++ EP+ V GH
Sbjct: 240 PTFMAVGAQDPVLGPEVMGMLRQAIRGCPEPMIVEAGGH 278
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 38.3 bits (89), Expect = 0.003
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 228 LKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNV---VEPLWVPGAGHNNIEMF 284
+ + + L+IHGT D+ V F + I ++ N + +W H +
Sbjct: 645 MARAEYFRNVD--YLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGLSGLS 702
Query: 285 EQYL-TRLDKFINEEL 299
+L T + F+ +
Sbjct: 703 TNHLYTHMTHFLKQCF 718
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 37.8 bits (87), Expect = 0.003
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHN-NIEMFEQYLTR 290
+K PV+++ G + D L + +G + +
Sbjct: 221 GGETTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSF-LKMADSGGQPQLTQPGKLTEA 279
Query: 291 LDKFI 295
F+
Sbjct: 280 FKYFL 284
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 38.0 bits (88), Expect = 0.003
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 235 PKIKSPVLVIHGTRDEIV--DFSHGMTIYESCPNVVEPLWVPGAGH 278
KI P L++ +D ++ S M + P+ ++ + GH
Sbjct: 482 RKILIPALMVTAEKDFVLVPQMSQHMEDW--IPH-LKRGHIEDCGH 524
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 37.3 bits (87), Expect = 0.003
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 15/92 (16%)
Query: 207 ALLSALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN 266
++ L + L L +K P+ + G +D
Sbjct: 184 SVAHMLLATSLAKQPYLL-------PALQALKLPIHYVCGEQDSK------FQQLAESSG 230
Query: 267 VVEPLWVPGAGHN-NIEMFEQYLTRLDKFINE 297
+ V AGHN + E + + + I+
Sbjct: 231 -LSYSQVAQAGHNVHHEQPQAFAKIVQAMIHS 261
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 37.6 bits (87), Expect = 0.004
Identities = 18/163 (11%), Positives = 37/163 (22%), Gaps = 26/163 (15%)
Query: 161 EAVYHTLRLKYNINCDQIILYGQSIGSVPTVYLASRVN---------VAGVILHCAL--L 209
+ + G G+ + R N V +I C + L
Sbjct: 137 HFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDL 196
Query: 210 SALRVVFPNFRKSLWFDG-----------LKNIDKLPKIKSPVLVIHGTRDEIVDFSHGM 258
L + K++ + D + + V+ D
Sbjct: 197 RELSNLESVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSR 256
Query: 259 TIYESCPNV---VEPLWVPGAGHNNI-EMFEQYLTRLDKFINE 297
+ G H +I E + + +F+
Sbjct: 257 HYADVLRKKGYKASFTLFKGYDHFDIIEETAIDDSDVSRFLRN 299
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 37.2 bits (87), Expect = 0.004
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 235 PKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
+++ P + + G + + + VE +PG GH
Sbjct: 231 TRLQMPTMTLAGGGAGGMGTFQLEQMKAYAED-VEGHVLPGCGH 273
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A
{Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Length = 316
Score = 37.3 bits (87), Expect = 0.005
Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 1/47 (2%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
L P L+ G +V S + + H
Sbjct: 235 AALAASSYPKLLFTGEPGALVSPEFAERFAASLTR-CALIRLGAGLH 280
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 36.7 bits (84), Expect = 0.008
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 228 LKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHNNIE--MFE 285
L+N+ + I P +++HG D + + ++ P E V GAGH+ E +
Sbjct: 249 LRNVPLIRHI--PAVIVHGRYDMACQVQNAWDLAKAWPE-AELHIVEGAGHSYDEPGILH 305
Query: 286 QYLTRLDKF 294
Q + D+F
Sbjct: 306 QLMIATDRF 314
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 36.7 bits (85), Expect = 0.009
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 7/77 (9%)
Query: 228 LKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEP---LWVPGAGHN--NIE 282
+ L + L+IH T DE + F H + P H +
Sbjct: 647 AHRVSALEE--QQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSS 704
Query: 283 MFEQYLTRLDKFINEEL 299
+ + + F E
Sbjct: 705 LKQHLYRSIINFFVECF 721
>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; 2.30A {Bacteroides fragilis}
Length = 398
Score = 35.9 bits (82), Expect = 0.013
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 240 PVLVIHGTRDEIVDFSHGMTIYE--SCPNVVEPLWVPGAGH----NNIEMFEQYLTRLDK 293
P+++ G D +D Y P+ V+ N+E + L R +
Sbjct: 312 PIILTEGGLDRDLDLVR--KAYAIVGTPDNVKIYHYKKFSDPDTRKNVEYLPEGLDRNEY 369
Query: 294 FINEELMQRYH 304
F + H
Sbjct: 370 FRMVNVDGPNH 380
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 35.6 bits (82), Expect = 0.013
Identities = 22/125 (17%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 170 KYNINCDQIILYGQSIG-----SVPTVYLASRVNVAGVIL-----HCALLSALRVVFPNF 219
++ IN +Q+ L G S G R GVIL + NF
Sbjct: 113 EWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPK--GVILCYPVTSFTFGWPSDLSHFNF 170
Query: 220 RKSLW--FDGLKNIDK-LPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNV---VEPLWV 273
++ + + P P + H DE V + + + E +
Sbjct: 171 EIENISEYNISEKVTSSTP----PTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFF 226
Query: 274 PGAGH 278
H
Sbjct: 227 ESGPH 231
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D
structure, serine esterase, HYD aromatic hydrocarbons,
catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A*
1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A
1ggv_A*
Length = 236
Score = 35.4 bits (82), Expect = 0.013
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 36/132 (27%)
Query: 192 YLASRVNVA---GVILHC-----ALLSALRVVFPNFRKSLWFDGL---KNIDKLPKIKSP 240
Y + G++ + A L A + +++ + G+ K ++K+P++K P
Sbjct: 106 YARHQPYSNGKVGLVGYSLGGALAFLVASK---GYVDRAVGYYGVGLEKQLNKVPEVKHP 162
Query: 241 VLVIHGTRDEIVDFSHGMTIYESCPN--VVEPLWVPGAGH--NN---------------- 280
L G +D V I E +++ W AGH
Sbjct: 163 ALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTGSSGYVASAAALANE 222
Query: 281 --IEMFEQYLTR 290
++ +R
Sbjct: 223 RTLDFLVPLQSR 234
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A
{Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A
1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A
2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Length = 310
Score = 35.5 bits (82), Expect = 0.014
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 234 LPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
+ G +D+++ + EPL + AGH
Sbjct: 245 QNDWNGQTFMAIGMKDKLLGPDVMYPMKALINGCPEPLEIADAGH 289
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase;
2.20A {Unidentified}
Length = 309
Score = 35.4 bits (82), Expect = 0.018
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 219 FRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
+ LKN + L P L+ H + + E+ PN +E +V H
Sbjct: 217 EPAFAEAEVLKNGEWLMASPIPKLLFHAEPGALAPKPVVDYLSENVPN-LEVRFVGAGTH 275
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 35.6 bits (82), Expect = 0.019
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 230 NIDKLPKIKS-PVLVIHGTRDEIVDFSHGMTIYESCPNV---VEPLWVPGAGHN--NIEM 283
+ + K L+IHGT D+ V F I ++ +V + +W H +
Sbjct: 650 VMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTA 709
Query: 284 FEQYLTRLDKFINEEL 299
+ T + FI +
Sbjct: 710 HQHIYTHMSHFIKQCF 725
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 35.2 bits (81), Expect = 0.023
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 211 ALRVVFPNFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPN--VV 268
L + WF GL + P L++ D +TI + +
Sbjct: 220 ELAKTEKYWDG--WFRGLS--NLFLSCPIPKLLLLAGVD---RLDKDLTIGQMQGKFQMQ 272
Query: 269 EPLWVPGAGH 278
+P GH
Sbjct: 273 V---LPQCGH 279
Score = 30.2 bits (68), Expect = 0.73
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 112 HGNGCDMGQSLATFM-DLSARLKCNVLLYDYSGYGSS----TGRASEANLYWDIEAVYHT 166
HG G S A F + +R++C ++ D +G + S + D+ V
Sbjct: 45 HGGG-HSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKDVGNVVEA 103
Query: 167 LRLKYNINCDQIILYGQSIG-SVPTVYLASRV--NVAGVIL 204
+ I+L G S+G ++ +S + ++ G+ +
Sbjct: 104 MYGD---LPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCM 141
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 34.8 bits (80), Expect = 0.027
Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 34/137 (24%)
Query: 170 KYNINCDQIILYGQSIGSVPTVYLASRVNVAGVILHCALLSALRV-VFPNF--------- 219
+++I+ QI G S+G ++ + N L+ + PN
Sbjct: 118 EWHIDPQQITPAGFSVGG----HIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVIS 173
Query: 220 ----------RKSLWFDGLKNIDKLPKIKS---PVLVIHGTRDEIVDFSHGMTIYESC-- 264
+ W + + S P + D IV ++ + +
Sbjct: 174 PLLGFPKDDATLATWTPTPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALAT 233
Query: 265 ---PNVVEPLWVPGAGH 278
P E H
Sbjct: 234 AKIP--YELHVFKHGPH 248
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 34.5 bits (78), Expect = 0.033
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 236 KIKSPVLVIHGTRDEIVDFSHGMTIYES-C---PNVVEPLWVPGAGHN 279
++P L+ + D V + T S N V + +
Sbjct: 323 APQTPTLLCGSSNDATVPLKNAQTAIASFQQRGSNQVALVDTGTGNAS 370
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
epoxide degradation, epichlorohydrin; 2.10A
{Agrobacterium tumefaciens} SCOP: c.69.1.11
Length = 294
Score = 34.5 bits (80), Expect = 0.034
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 21/70 (30%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPL---WVPGAGHNNIEMFEQYL 288
PV +I G D V ++ + E P + GH
Sbjct: 229 LDHTMSDLPVTMIWGLGDTCVPYA---PLIEFVPKYYSNYTMETIEDCGH---------- 275
Query: 289 TRLDKFINEE 298
F+ E
Sbjct: 276 -----FLMVE 280
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 33.5 bits (77), Expect = 0.061
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 234 LPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
L I+ P +++G ++ + + +++ G GH
Sbjct: 227 LKSIQVPTTLVYGDSSKLNRPEDLQQQKMTMTQ-AKRVFLSG-GH 269
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 32.9 bits (75), Expect = 0.10
Identities = 41/291 (14%), Positives = 82/291 (28%), Gaps = 84/291 (28%)
Query: 71 MNQKKHAIISRNVFWTTNCKGNKI-ACIMIPHNEAVF-TIIYSHGNGCDMGQSLATFMDL 128
M + K+ +I+++ + I+ N+ I+Y HG G G
Sbjct: 1 MTEIKYKVITKD--------AFALPYTIIKAKNQPTKGVIVYIHGGGLMFG-KANDLSPQ 51
Query: 129 SARL---KCNVLLYDYSGYGSSTGR-ASEANLYWD--IEAVYHTLR-LKYNINCDQIILY 181
+ +++ Y R E + D IE VY + ++ + I +
Sbjct: 52 YIDILTEHYDLIQLSY--------RLLPEVS--LDCIIEDVYASFDAIQSQYSNCPIFTF 101
Query: 182 GQSIGSVPTVYLASRVNVAGVI-------LHCALLSALRVVFPNFRKSL----------- 223
G+S G+ ++ +A ++ GVI ++ + +S+
Sbjct: 102 GRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQSINETMIAQLTSP 161
Query: 224 -----------------------WFDGLKNIDKLPKIKS----------PVLVIHGTRDE 250
W + + D + PV + H D
Sbjct: 162 TPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLPPVFIAHCNGDY 221
Query: 251 IVDFSHGMTIYESCPNVVEPLWVPGAGH----NNIEMFEQYLTRLDKFINE 297
V I P+ V H + ++ F+N
Sbjct: 222 DVPVEESEHIMNHVPH-STFERVNKNEHDFDRRPNDEAITIYRKVVDFLNA 271
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 32.6 bits (73), Expect = 0.13
Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 17/135 (12%)
Query: 85 WTTNCKGNKIACIMIPHNEAVFTIIYSHGNGCDMGQS--LATFMDLSARLKCNVLLYDYS 142
GN I+ + ++ NG + + AR NV DY
Sbjct: 43 VNLIGGGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYR 102
Query: 143 GYGSSTGRASEANLYW----------DIEAVYHTLRLKYNINCDQIILYGQSIGS-VPTV 191
+ + DI+ V ++ ++I L G+S G
Sbjct: 103 THYVPPFLKDRQLSFTANWGWSTWISDIKEVVSFIKRDSGQ--ERIYLAGESFGGIAALN 160
Query: 192 YLASRV--NVAGVIL 204
Y + ++ G+IL
Sbjct: 161 YSSLYWKNDIKGLIL 175
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain,
catalytic triad (A His272, Glu130), mutant, I135F,
haloalkanes; 0.95A {Rhodococcus SP} PDB: 3fwh_A 3fbw_A
3rlt_A 3rk4_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A
Length = 299
Score = 32.6 bits (75), Expect = 0.13
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 224 WFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIY-ESCPNVVEPLWVPGAGH 278
+ + L P L+ GT ++ ES PN + + + H
Sbjct: 225 YMNWLHQSPV------PKLLFWGTPGVLIP-PAEAARLAESLPN-CKTVDIGPGLH 272
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 32.3 bits (74), Expect = 0.14
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 240 PVLVIHGTRDEIVDFSHGMTIYESCPN--VVEPLWVPGAGH 278
P+LV+ G +I+ S P +V +P GH
Sbjct: 229 PLLVLRGETSDILSAQT-AAKMASRPGVELVT---LPRIGH 265
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 32.5 bits (74), Expect = 0.16
Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 33/137 (24%)
Query: 170 KYNINCDQIILYGQSIGSVPTVYLASRVN----------------VAGVILHCALLSALR 213
++++C +IIL G S G A +IL ++ L
Sbjct: 103 AHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVID-LT 161
Query: 214 VVFPNFRKSLWFDG--------LKNIDK-LPKIKSPVLVIHGTRDEIVDFSHGMTIYESC 264
FP + + + P V DE V + + ++
Sbjct: 162 AGFPTTSAARNQITTDARLWAAQRLVTPASK----PAFVWQTATDESVPPINSLKYVQAM 217
Query: 265 P--NV-VEPLWVPGAGH 278
V H
Sbjct: 218 LQHQVATAYHLFGSGIH 234
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 32.2 bits (74), Expect = 0.20
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 218 NFRKSLWFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAG 277
L D L D KI PVLV+ G + I + + V +P G
Sbjct: 214 AATIDLEHDEL---DMKQKISCPVLVLWGEKGIIGRKYDVLATWRERAIDVSGQSLP-CG 269
Query: 278 H 278
H
Sbjct: 270 H 270
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Length = 306
Score = 31.9 bits (73), Expect = 0.23
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
+ KI P+L + G + + ++ + V+ + +GH
Sbjct: 237 EAGNKIPVPMLALWGASGIAQSAATPLDVWRKWASDVQGAPIE-SGH 282
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.31
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 32/110 (29%)
Query: 171 YNINCDQIILYGQSIGSVPTVYLASRVNVAGVI-------------LHCALLSALRVVF- 216
Y + G + G + + + + G++ ++ A+ V+F
Sbjct: 249 YVVTAKL---LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 217 ---------PN--FRKSLWFDGLKNIDKLPKIKSPVLVIHG-TRDEIVDF 254
PN S+ D L+N + +P SP+L I T++++ D+
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVP---SPMLSISNLTQEQVQDY 352
Score = 28.9 bits (64), Expect = 3.1
Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 49/96 (51%)
Query: 145 GSSTGRASEANLYWDIEAVYHTLRLKYNINCD--QIILYGQSIGSVPTVYLASRVNVAGV 202
G TG W +E V N N + Q + G ++
Sbjct: 1834 GKRTG--------WLVEIV--------NYNVENQQYVAAGDLRA----------LDTVTN 1867
Query: 203 ILHCALLSALRVVFPNFRKSLWFDGLKNID--KLPK 236
+L NF K L+ ID +L K
Sbjct: 1868 VL-------------NFIK------LQKIDIIELQK 1884
>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
{Burkholderia SP} PDB: 1y37_A
Length = 304
Score = 31.5 bits (72), Expect = 0.33
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 232 DKLPKIKSPVLVIHGTRDEIVDFSHGMTIYES-CPNVVEPLWVPGAGH 278
D +++ P LV G+ + ++ N+ +PG GH
Sbjct: 226 DLGRQVQCPALVFSGSAGLMHSLFEMQVVWAPRLANMRFAS-LPG-GH 271
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 31.5 bits (71), Expect = 0.37
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 233 KLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGH 278
L + P+ V +G D + D + PN++ +P H
Sbjct: 308 NLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPNLIYHRKIPPYNH 353
>3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida
antarctica} PDB: 2veo_A*
Length = 462
Score = 31.4 bits (70), Expect = 0.42
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 235 PKIKSPVLVIHGTRDEIVDFSHGMTIYES-CPN--VVEPLWVPGAGHN 279
K P + H DEIV + T + C + P A H
Sbjct: 341 SVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGANINFSPYPIAEHL 388
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase;
2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Length = 466
Score = 31.3 bits (70), Expect = 0.48
Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 12/122 (9%)
Query: 114 NGCDMGQSLATFMD-LSARLKCNVLLYDYSGYGSSTGRAS-------EANLYWDIEAVYH 165
G +G F + + +++ +DYS + +S L + ++
Sbjct: 206 TGSAVGCDPDVFWSVIPCLMDGHLMAFDYSNFDASLSPVWFVCLEKVLTKLGFAGSSLIQ 265
Query: 166 TLRLKYNINCDQIILYGQSI--GSVPTVYLASRVNVAGVILHCALLSALRVVFPNFRKSL 223
++ ++I D+I + + G T S +N +I+ +L A + + + K L
Sbjct: 266 SICNTHHIFRDEIYVVEGGMPSGCSGTSIFNSMINN--IIIRTLILDAYKGIDLDKLKIL 323
Query: 224 WF 225
+
Sbjct: 324 AY 325
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 30.3 bits (68), Expect = 0.64
Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 15/124 (12%)
Query: 171 YNINCDQIILYGQSIG--------SVPTVYLASRVNVAGVILHCAL--LSALRVVFPNFR 220
I+L G S G + A + V+ L L L N +
Sbjct: 124 AKEIDGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTSMNEK 183
Query: 221 KSLWFDGLKN---IDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAG 277
+ D ++ + + V V G + + + E+
Sbjct: 184 FKMDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWDADHVI--AFEKH 241
Query: 278 HNNI 281
H N+
Sbjct: 242 HFNV 245
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 30.2 bits (67), Expect = 0.86
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 228 LKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEPLWVPGAGHNNIE--MFE 285
L++ ++ I P +++HG D + ++++ P + P +GH+ E +
Sbjct: 247 LRDAHRIADI--PGVIVHGRYDVVCPLQSAWDLHKAWPKA-QLQISPASGHSAFEPENVD 303
Query: 286 QYLTRLDKF 294
+ D F
Sbjct: 304 ALVRATDGF 312
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich,
structural genomics, PSI-2, prote structure initiative;
1.74A {Klebsiella pneumoniae subsp}
Length = 241
Score = 29.6 bits (67), Expect = 1.00
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 231 IDKLPKIKSPVLVIHGTRDEIV 252
+D + +PVL ++G +D +
Sbjct: 162 VDIAVDLNAPVLGLYGAKDASI 183
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei
structural genomics consortium, TBSGC, hydrolase; 1.19A
{Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Length = 297
Score = 29.7 bits (67), Expect = 1.0
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 11/56 (19%)
Query: 224 WFDGLKNIDKLPKIKSPVLVIHGTRDEIVDFSHGMTIY-ESCPNVVEPLWVPGAGH 278
+ L+ D P L I+ I + + Y S PN E H
Sbjct: 226 YRSWLEETDM------PKLFINAEPGAI--ITGRIRDYVRSWPNQTEIT--VPGVH 271
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 6/25 (24%)
Query: 228 LKNID---KL--PKIKSPVLVIHGT 247
LK + KL +P L I T
Sbjct: 22 LKKLQASLKLYADD-SAPALAIKAT 45
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 29.0 bits (64), Expect = 2.8
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 231 IDKLPKIKSPVLVIHGTRDEIVDFSHGMTIYESCPNVVEP-LWVPGAGHNNIEMFE 285
+ K+K+ VL++HG +D V +++ P ++ H + ++
Sbjct: 450 LINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIYMNSWQ 505
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular
trafficking, vesicle tethering, multisubunit tethering
complex, exocyst; 1.90A {Homo sapiens}
Length = 263
Score = 28.4 bits (63), Expect = 3.2
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 279 NNIEMFEQYLTRLDKFINEELMQRYHQ 305
NN+E+ + ++ L K + + + + Q
Sbjct: 27 NNVEVCSENISTLKKTLESDCTKLFSQ 53
>3bs2_A Lipocalin; beta barrel, ligand binding protein; 1.15A {Argas
monolakensis} PDB: 3bu1_A 3bu9_A
Length = 148
Score = 26.3 bits (57), Expect = 8.9
Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 5/66 (7%)
Query: 56 KIIEHGQKKNKCILKMNQKKHAIISRNVFWTTNCKGNKIACIMIPHNEAVFTIIYSHGNG 115
K + + GN I ++YS G+
Sbjct: 39 KGSNFNDAAQTATYTYGNLGSGNQLTQQTASASISGNAIVV-----GTDHSEVLYSDGST 93
Query: 116 CDMGQS 121
CD+ +
Sbjct: 94 CDVVRL 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.439
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,831,873
Number of extensions: 280750
Number of successful extensions: 838
Number of sequences better than 10.0: 1
Number of HSP's gapped: 777
Number of HSP's successfully gapped: 161
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.2 bits)