BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2107
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 118/263 (44%), Gaps = 46/263 (17%)
Query: 129 ILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWK 188
I + D +V +W R G+H + GH V GVA DG+ A S S D+T +W
Sbjct: 318 IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVA-FSPDGQTIA--SASDDKTVKLWN-- 372
Query: 189 VESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDE 248
+ + + GH + V S Q A+ D +K+W + NG
Sbjct: 373 ---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-----------NRNGQ- 417
Query: 249 GTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGG 307
L TL GH ++ V ++ D+ I S S D T+K+W+ G
Sbjct: 418 ------------------LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQ 458
Query: 308 MKSEIVG-NKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSV 366
+ + G + S V +SP + + +AS DK ++L++ + G +++ T + H V+ V
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQ-TLTGHSSSVRGV 514
Query: 367 RWSPIDPQLFVSASFDNSVKLWD 389
+SP D Q SAS D +VKLW+
Sbjct: 515 AFSP-DGQTIASASDDKTVKLWN 536
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 122/279 (43%), Gaps = 48/279 (17%)
Query: 115 HDDWVSAIDFHNDW--ILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAA 172
H V + F D I + D +V +W R G+ + GH V GVA DG+ A
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIA 73
Query: 173 FISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
S S D+T +W + + + GH + V S Q A+ D +K+W
Sbjct: 74 --SASDDKTVKLWN-----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW- 125
Query: 233 ADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITS 292
+ NG L TL GH ++ V ++ + I S
Sbjct: 126 ----------NRNGQ-------------------LLQTLTGHSSSVWGVAFSPDGQTIAS 156
Query: 293 -SWDHTLKIWDAELGGMKSEIVG-NKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGA 350
S D T+K+W+ G + + G + S + V +SP + + +AS DK ++L++ + G
Sbjct: 157 ASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN---RNGQ 212
Query: 351 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 389
+++ T + H V+ V +SP D Q SAS D +VKLW+
Sbjct: 213 LLQ-TLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 249
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 115/263 (43%), Gaps = 46/263 (17%)
Query: 129 ILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWK 188
I + D +V +W R G+ + GH V+GVA DG+ A S S D+T +W
Sbjct: 72 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDGQTIA--SASDDKTVKLWN-- 126
Query: 189 VESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDE 248
+ + + GH + V S Q A+ D +K+W + NG
Sbjct: 127 ---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----------NRNGQ- 171
Query: 249 GTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGG 307
L TL GH ++ V ++ + I S S D T+K+W+ G
Sbjct: 172 ------------------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ 212
Query: 308 MKSEIVG-NKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSV 366
+ + G + S V +SP + + +AS DK ++L++ + G +++ T + H V V
Sbjct: 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQ-TLTGHSSSVNGV 268
Query: 367 RWSPIDPQLFVSASFDNSVKLWD 389
+ P D Q SAS D +VKLW+
Sbjct: 269 AFRP-DGQTIASASDDKTVKLWN 290
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 39/295 (13%)
Query: 115 HDDWV-SAIDFHNDWILTGCYDHSVHIWTR-RGEHKLNIPGHGGPVKGVAWLYNDGKDAA 172
HDD V + + F + I++G D+++ +W+ G+ + GH G V W + +D
Sbjct: 117 HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----W-SSQMRDNI 171
Query: 173 FISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
IS STD+T +W + + ECIH GH + + + E R +G D L++W
Sbjct: 172 IISGSTDRTLKVWN----AETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWD 225
Query: 233 ADISKERGDPSENGDEGTTSKKRKKEYSSAS----------------SRTPLITLKGHKE 276
+ + + G + R +Y + T L TL+GH
Sbjct: 226 IETGQ-----CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 280
Query: 277 AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASAD 336
+ ++Q+ + +++ S D ++++WD E G + G++S ++++ +AD
Sbjct: 281 RVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNAD 338
Query: 337 KQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
++++D K + + H+ V +++ + +++S D +VKLWDL+
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWDLK 390
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 271 LKGHKE-AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLS-K 328
LKGH + I+ +Q+ + I++ S D+TLK+W A G +VG+ V S +
Sbjct: 114 LKGHDDHVITCLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG--GVWSSQMRDN 170
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
++I+ S D+ +++++ + E T H +VR + + VS S D ++++W
Sbjct: 171 IIISGSTDRTLKVWNAETGECI---HTLYGH---TSTVRCMHLHEKRVVSGSRDATLRVW 224
Query: 389 DL 390
D+
Sbjct: 225 DI 226
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 115 HDDWVSAIDFHNDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAF 173
H V + H +++G D ++ +W G+ + GH V+ V + DG+
Sbjct: 198 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRV-- 252
Query: 174 ISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSA 233
+S + D +W+ + E+ C+H +GH + ++ +G D +++W
Sbjct: 253 VSGAYDFMVKVWDPETET----CLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVW-- 304
Query: 234 DISKERGDPSENGDEGTTSKKRKKEYSSASSRT-------------PLITLKG---HKEA 277
D+ + G + TS K+ S L TL+G H+ A
Sbjct: 305 DVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 278 ISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIV 313
++ +Q+ + +ITSS D T+K+WD + G +V
Sbjct: 365 VTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLV 399
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW G K +K
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------------GAYDGKFEK---- 62
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 63 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWD--VKTGMCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 170
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 171 SYDGLCRIWD 180
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 268 LITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSP 325
+ TL GH +A+S+V+++ E + +SS D +KIW A G + I G+K DV +S
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 326 LSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 385
S L+++AS DK ++++D V G +K T H +V ++P L VS SFD SV
Sbjct: 79 DSNLLVSASDDKTLKIWD--VSSGKCLK-TLKGHSNYVFCCNFNP-QSNLIVSGSFDESV 134
Query: 386 KLWDLR 391
++WD++
Sbjct: 135 RIWDVK 140
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 125/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 6 QSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW +S S D+T IW+ +S +C+ +GH +
Sbjct: 66 GHKLGISDVAW---SSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 118
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW + L TL
Sbjct: 119 NPQSNLIVSGSFDESVRIW-----------------------------DVKTGMCLKTLP 149
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 209
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 210 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 388 WDLR 391
W+L+
Sbjct: 267 WNLQ 270
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW G K +K
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------------GAYDGKFEK---- 62
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 63 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWD--VKTGMCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 170
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 171 SYDGLCRIWD 180
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 268 LITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSP 325
+ TL GH +A+S+V+++ E + +SS D +KIW A G + I G+K DV +S
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 326 LSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 385
S L+++AS DK ++++D V G +K T H +V ++P L VS SFD SV
Sbjct: 79 DSNLLVSASDDKTLKIWD--VSSGKCLK-TLKGHSNYVFCCNFNP-QSNLIVSGSFDESV 134
Query: 386 KLWDLR 391
++WD++
Sbjct: 135 RIWDVK 140
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 125/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 6 QSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW +S S D+T IW+ +S +C+ +GH +
Sbjct: 66 GHKLGISDVAW---SSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 118
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW + L TL
Sbjct: 119 NPQSNLIVSGSFDESVRIW-----------------------------DVKTGMCLKTLP 149
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 209
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 210 ILAATLDNDLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI 266
Query: 388 WDLR 391
W+L+
Sbjct: 267 WNLQ 270
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 76
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 77 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 128
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 184
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 185 SYDGLCRIWD 194
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 20 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 79
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW +S S D+T IW+ +S +C+ +GH +
Sbjct: 80 GHKLGISDVAW---SSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 132
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW K L TL
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTLP 163
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 164 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 223
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 224 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 280
Query: 388 WDLR 391
W+L+
Sbjct: 281 WNLQ 284
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 62
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 63 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 170
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 171 SYDGLCRIWD 180
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 6/125 (4%)
Query: 269 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSPL 326
TL GH +A+S+V+++ E + +SS D +KIW A G + I G+K DV +S
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 327 SKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 386
S L+++AS DK ++++D V G +K T H +V ++P L VS SFD SV+
Sbjct: 80 SNLLVSASDDKTLKIWD--VSSGKCLK-TLKGHSNYVFCCNFNP-QSNLIVSGSFDESVR 135
Query: 387 LWDLR 391
+WD++
Sbjct: 136 IWDVK 140
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 47/285 (16%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H VS++ F + +W+ + D + IW G+ + I GH + VAW
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSDSN 81
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
+S S D+T IW+ +S +C+ +GH + + +G +D ++IW
Sbjct: 82 LLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 232 SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDE-II 290
K L TL H + +SAV + I+
Sbjct: 138 DVKTGK-----------------------------CLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 291 TSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKE 348
+SS+D +IWD G ++ N V +SP K ++ A+ D ++L+D +
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSK 226
Query: 349 GAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
G +K T++ HK ++ +S + VS S DN V +W+L+
Sbjct: 227 GKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 55
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 56 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 107
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 163
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 164 SYDGLCRIWD 173
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 6/125 (4%)
Query: 269 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSPL 326
TL GH +A+S+V+++ E + +SS D +KIW A G + I G+K DV +S
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 327 SKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 386
S L+++AS DK ++++D V G +K T H +V ++P L VS SFD SV+
Sbjct: 73 SNLLVSASDDKTLKIWD--VSSGKCLK-TLKGHSNYVFCCNFNP-QSNLIVSGSFDESVR 128
Query: 387 LWDLR 391
+WD++
Sbjct: 129 IWDVK 133
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 47/285 (16%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H VS++ F + +W+ + D + IW G+ + I GH + VAW
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSDSN 74
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
+S S D+T IW+ +S +C+ +GH + + +G +D ++IW
Sbjct: 75 LLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 232 SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDE-II 290
K L TL H + +SAV + I+
Sbjct: 131 DVKTGK-----------------------------CLKTLPAHSDPVSAVHFNRDGSLIV 161
Query: 291 TSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKE 348
+SS+D +IWD G ++ N V +SP K ++ A+ D ++L+D +
Sbjct: 162 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSK 219
Query: 349 GAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
G +K T++ HK ++ +S + VS S DN V +W+L+
Sbjct: 220 GKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 263
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW G K +K
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------------GAYDGKFEK---- 58
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 59 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 110
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 166
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 167 SYDGLCRIWD 176
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 6/125 (4%)
Query: 269 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSPL 326
TL GH +A+S+V+++ E + +SS D +KIW A G + I G+K DV +S
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 327 SKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 386
S L+++AS DK ++++D V G +K T H +V ++P L VS SFD SV+
Sbjct: 76 SNLLVSASDDKTLKIWD--VSSGKCLK-TLKGHSNYVFCCNFNP-QSNLIVSGSFDESVR 131
Query: 387 LWDLR 391
+WD++
Sbjct: 132 IWDVK 136
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 47/285 (16%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H VS++ F + +W+ + D + IW G+ + I GH + VAW
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSDSN 77
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
+S S D+T IW+ +S +C+ +GH + + +G +D ++IW
Sbjct: 78 LLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 232 SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDE-II 290
K L TL H + +SAV + I+
Sbjct: 134 DVKTGK-----------------------------CLKTLPAHSDPVSAVHFNRDGSLIV 164
Query: 291 TSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKE 348
+SS+D +IWD G ++ N V +SP K ++ A+ D ++L+D +
Sbjct: 165 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSK 222
Query: 349 GAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
G +K T++ HK ++ +S + VS S DN V +W+L+
Sbjct: 223 GKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 266
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 83
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 84 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 135
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 191
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 192 SYDGLCRIWD 201
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 27 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 86
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW + +S S D+T IW+ +S +C+ +GH +
Sbjct: 87 GHKLGISDVAWSSDSN---LLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 139
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW K L TL
Sbjct: 140 NPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTLP 170
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 171 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 230
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 231 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 287
Query: 388 WDLR 391
W+L+
Sbjct: 288 WNLQ 291
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 65
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 66 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 117
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 173
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 174 SYDGLCRIWD 183
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 53/305 (17%)
Query: 101 LESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNI 151
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 8 FQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 152 PGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVT 211
GH + VAW +S S D+T IW+ +S +C+ +GH +
Sbjct: 68 SGHKLGISDVAW---SSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCN 120
Query: 212 VSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITL 271
+ +G +D ++IW K L TL
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTL 151
Query: 272 KGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSK 328
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVK 386
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V
Sbjct: 212 YILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 387 LWDLR 391
+W+L+
Sbjct: 269 IWNLQ 273
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 62
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 63 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 170
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 171 SYDGLCRIWD 180
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 6/125 (4%)
Query: 269 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSPL 326
TL GH +A+S+V+++ E + +SS D +KIW A G + I G+K DV +S
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 327 SKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 386
S L+++AS DK ++++D V G +K T H +V ++P L VS SFD SV+
Sbjct: 80 SNLLVSASDDKTLKIWD--VSSGKCLK-TLKGHSNYVFCCNFNP-QSNLIVSGSFDESVR 135
Query: 387 LWDLR 391
+WD++
Sbjct: 136 IWDVK 140
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 47/285 (16%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H VS++ F + +W+ + D + IW G+ + I GH + VAW
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSDSN 81
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
+S S D+T IW+ +S +C+ +GH + + +G +D ++IW
Sbjct: 82 LLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 232 SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDE-II 290
K L TL H + +SAV + I+
Sbjct: 138 DVKTGK-----------------------------CLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 291 TSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKE 348
+SS+D +IWD G ++ N V +SP K ++ A+ D ++L+D +
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSK 226
Query: 349 GAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
G +K T++ HK ++ +S + VS S DN V +W+L+
Sbjct: 227 GKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 81
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 82 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 189
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 190 SYDGLCRIWD 199
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 25 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 84
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW + +S S D+T IW+ +S +C+ +GH +
Sbjct: 85 GHKLGISDVAWSSDSN---LLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 137
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW K L TL
Sbjct: 138 NPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTLP 168
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 169 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 228
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 229 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 285
Query: 388 WDLR 391
W+L+
Sbjct: 286 WNLQ 289
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 65
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 66 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 117
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 173
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 174 SYDGLCRIWD 183
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 9 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW +S S D+T IW+ +S +C+ +GH +
Sbjct: 69 GHKLGISDVAW---SSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 121
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW K L TL
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTLP 152
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 212
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 213 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 388 WDLR 391
W+L+
Sbjct: 270 WNLQ 273
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW G K +K
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------------GAYDGKFEK---- 65
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 66 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 117
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 173
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 174 SYDGLCRIWD 183
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 9 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW +S S D+T IW+ +S +C+ +GH +
Sbjct: 69 GHKLGISDVAW---SSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 121
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW K L TL
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTLP 152
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 212
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 213 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 269
Query: 388 WDLR 391
W+L+
Sbjct: 270 WNLQ 273
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 59
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 60 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 111
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 167
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 168 SYDGLCRIWD 177
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 3 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW +S S D+T IW+ +S +C+ +GH +
Sbjct: 63 GHKLGISDVAW---SSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 115
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW K L TL
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTLP 146
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 206
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 207 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263
Query: 388 WDLR 391
W+L+
Sbjct: 264 WNLQ 267
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 59
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 60 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 111
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 167
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 168 SYDGLCRIWD 177
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 3 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW +S S D+T IW+ +S +C+ +GH +
Sbjct: 63 GHKLGISDVAW---SSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 115
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW K L TL
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTLP 146
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 206
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 207 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263
Query: 388 WDLR 391
W+L+
Sbjct: 264 WNLQ 267
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW A +G K
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-------------YDGKFEK-------- 60
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 61 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 112
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 168
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 169 SYDGLCRIWD 178
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 4 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 63
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW +S S D+T IW+ +S +C+ +GH +
Sbjct: 64 GHKLGISDVAW---SSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 116
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW K L TL
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTLP 147
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 148 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 207
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 208 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 264
Query: 388 WDLR 391
W+L+
Sbjct: 265 WNLQ 268
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A+ D L+KIW G K +K
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIW-----------------GAYDGKFEK---- 64
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 65 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 116
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 172
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 173 SYDGLCRIWD 182
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 126/304 (41%), Gaps = 53/304 (17%)
Query: 102 ESTPTPSPLDCIL------HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIP 152
+S PTP + L H VS++ F + +W+ + D + IW G+ + I
Sbjct: 8 QSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 67
Query: 153 GHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
GH + VAW + +S S D+T IW+ +S +C+ +GH +
Sbjct: 68 GHKLGISDVAWSSDSN---LLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNF 120
Query: 213 SESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLK 272
+ +G +D ++IW K L TL
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGK-----------------------------CLKTLP 151
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKL 329
H + +SAV + I++SS+D +IWD G ++ N V +SP K
Sbjct: 152 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 211
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKL 387
++ A+ D ++L+D +G +K T++ HK ++ +S + VS S DN V +
Sbjct: 212 ILAATLDNTLKLWD--YSKGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 268
Query: 388 WDLR 391
W+L+
Sbjct: 269 WNLQ 272
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 35/190 (18%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + +V S + + A D L+KIW A +G K
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGA-------------YDGKFEK-------- 62
Query: 262 ASSRTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSF-F 319
T+ GHK IS V W++ + ++++S D TLKIWD G + G+ ++ F
Sbjct: 63 --------TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+++P S L+++ S D+ +R++D VK G +K T +H + V +V ++ D L VS+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWD--VKTGKCLK-TLPAHSDPVSAVHFNR-DGSLIVSS 170
Query: 380 SFDNSVKLWD 389
S+D ++WD
Sbjct: 171 SYDGLCRIWD 180
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 269 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSPL 326
TL GH +A+S+V+++ E + SS D +KIW A G + I G+K DV +S
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 327 SKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 386
S L+++AS DK ++++D V G +K T H +V ++P L VS SFD SV+
Sbjct: 80 SNLLVSASDDKTLKIWD--VSSGKCLK-TLKGHSNYVFCCNFNP-QSNLIVSGSFDESVR 135
Query: 387 LWDLR 391
+WD++
Sbjct: 136 IWDVK 140
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 117/285 (41%), Gaps = 47/285 (16%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H VS++ F + +W+ D + IW G+ + I GH + VAW
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW---SSDSN 81
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
+S S D+T IW+ +S +C+ +GH + + +G +D ++IW
Sbjct: 82 LLVSASDDKTLKIWD----VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 232 SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDE-II 290
K L TL H + +SAV + I+
Sbjct: 138 DVKTGK-----------------------------CLKTLPAHSDPVSAVHFNRDGSLIV 168
Query: 291 TSSWDHTLKIWDAELGGMKSEIV--GNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKE 348
+SS+D +IWD G ++ N V +SP K ++ A+ D ++L+D +
Sbjct: 169 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSK 226
Query: 349 GAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
G +K T++ HK ++ +S + VS S DN V +W+L+
Sbjct: 227 GKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 25/275 (9%)
Query: 119 VSAIDFHNDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVS 177
++ + F +++++TG D + ++ + + L + GH G V W +S S
Sbjct: 125 ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGV----WALKYAHGGILVSGS 180
Query: 178 TDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESR--QQFATGGWDCLLKIWSADI 235
TD+T +W+ K C HV GH + + + E + + TG D L +W +
Sbjct: 181 TDRTVRVWDIKKGC----CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK--L 234
Query: 236 SKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITSSWD 295
KE P D G ++ + + L+GH ++ V + +++ S+D
Sbjct: 235 PKESSVP----DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHG-NIVVSGSYD 289
Query: 296 HTLKIWDAELGGMKSEIVGNK-SFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKS 354
+TL +WD + G+ + Y K I+AS D IR++D E +
Sbjct: 290 NTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL---ENGELXY 346
Query: 355 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 389
T H V +R S + VSA+ D S++ WD
Sbjct: 347 TLQGHTALVGLLRLS---DKFLVSAAADGSIRGWD 378
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 47/270 (17%), Positives = 104/270 (38%), Gaps = 76/270 (28%)
Query: 128 WILTGCYDHSVHIWTRRGEHKLNIPGHG-------------------GPVKG--VAWLYN 166
+I+TG D+++H+W E ++P HG G ++G +
Sbjct: 219 YIVTGSRDNTLHVWKLPKES--SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 167 DGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDC 226
G +S S D T ++W+ +C+++ GH + + R++ + D
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVA----QXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 227 LLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAV 286
++IW ENG+ TL+GH + ++ +
Sbjct: 333 TIRIWDL----------ENGE-------------------LXYTLQGHTALVGLLRLSD- 362
Query: 287 DEIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKL--------VITASADKQ 338
+++++ D +++ WDA K F H++ LS + ++ + ++ Q
Sbjct: 363 KFLVSAAADGSIRGWDANDYSRK---------FSYHHTNLSAITTFYVSDNILVSGSENQ 413
Query: 339 IRLYDPKVKEGAIVKSTFSSHKEWVQSVRW 368
+Y+ ++ G +V + + + SV +
Sbjct: 414 FNIYN--LRSGKLVHANILKDADQIWSVNF 441
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 268 LITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKS---FFDVHYS 324
L+ L GH + A+++ +++ S D T+++WD + G G+ S D+
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 325 PLSKLVITASADKQIRLYD-------PKVKEGAIVKSTFSSHKE----------WVQSVR 367
K ++T S D + ++ P E F + +E SVR
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR 274
Query: 368 WSPIDPQLFVSASFDNSVKLWDL 390
+ VS S+DN++ +WD+
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDV 297
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 270 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKL 329
TL+GH ++ + +IT + D ++++D+ ++ G+ +
Sbjct: 116 TLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQS---VRWSPIDPQLFVSASFDNSVK 386
+++ S D+ +R++D +K+G F H V+ V + I + V+ S DN++
Sbjct: 176 LVSGSTDRTVRVWD--IKKGCCTH-VFEGHNSTVRCLDIVEYKNI--KYIVTGSRDNTLH 230
Query: 387 LWDL 390
+W L
Sbjct: 231 VWKL 234
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 118/275 (42%), Gaps = 25/275 (9%)
Query: 119 VSAIDFHNDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVS 177
++ + F +++++TG D + ++ + + L + GH G V W +S S
Sbjct: 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV----WALKYAHGGILVSGS 180
Query: 178 TDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESR--QQFATGGWDCLLKIWSADI 235
TD+T +W+ K C HV GH + + + E + + TG D L +W +
Sbjct: 181 TDRTVRVWDIKKGC----CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK--L 234
Query: 236 SKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITSSWD 295
KE P D G ++ + + L+GH ++ V + +++ S+D
Sbjct: 235 PKESSVP----DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG-NIVVSGSYD 289
Query: 296 HTLKIWD-AELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKS 354
+TL +WD A++ + + Y K I+AS D IR++D E +
Sbjct: 290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL---ENGELMY 346
Query: 355 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 389
T H V +R S + VSA+ D S++ WD
Sbjct: 347 TLQGHTALVGLLRLS---DKFLVSAAADGSIRGWD 378
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/270 (17%), Positives = 106/270 (39%), Gaps = 76/270 (28%)
Query: 128 WILTGCYDHSVHIWTRRGEHKLNIPGHG-------------------GPVKG--VAWLYN 166
+I+TG D+++H+W E ++P HG G ++G +
Sbjct: 219 YIVTGSRDNTLHVWKLPKES--SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 167 DGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDC 226
G +S S D T ++W+ ++C+++ GH + + R++ + D
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 227 LLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAV 286
++IW ENG+ + TL+GH + ++ +
Sbjct: 333 TIRIWDL----------ENGE-------------------LMYTLQGHTALVGLLRLSD- 362
Query: 287 DEIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKL--------VITASADKQ 338
+++++ D +++ WDA K F H++ LS + ++ + ++ Q
Sbjct: 363 KFLVSAAADGSIRGWDANDYSRK---------FSYHHTNLSAITTFYVSDNILVSGSENQ 413
Query: 339 IRLYDPKVKEGAIVKSTFSSHKEWVQSVRW 368
+Y+ ++ G +V + + + SV +
Sbjct: 414 FNIYN--LRSGKLVHANILKDADQIWSVNF 441
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 268 LITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKS---FFDVHYS 324
L+ L GH + A+++ +++ S D T+++WD + G G+ S D+
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 325 PLSKLVITASADKQIRLYD-------PKVKEGAIVKSTFSSHKE----------WVQSVR 367
K ++T S D + ++ P E F + +E + SVR
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274
Query: 368 WSPIDPQLFVSASFDNSVKLWDL 390
+ VS S+DN++ +WD+
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWDV 297
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 270 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKL 329
TL+GH ++ + +IT + D ++++D+ ++ G+ +
Sbjct: 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQS---VRWSPIDPQLFVSASFDNSVK 386
+++ S D+ +R++D +K+G F H V+ V + I + V+ S DN++
Sbjct: 176 LVSGSTDRTVRVWD--IKKGCCTH-VFEGHNSTVRCLDIVEYKNI--KYIVTGSRDNTLH 230
Query: 387 LWDL 390
+W L
Sbjct: 231 VWKL 234
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 257 KEYSSASSRTPLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKSEIVGN 315
+ S S P L+GH +S V + +++SWDH+L++W+ + G + + +G+
Sbjct: 49 RHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGH 108
Query: 316 -KSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSP-IDP 373
K V +SP ++ +++ D +R+++ VK + + +H +WV VR+SP +D
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWN--VKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 374 QLFVSASFDNSVKLWDL 390
+ VS +DN VK+WDL
Sbjct: 167 PVIVSGGWDNLVKVWDL 183
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 47/225 (20%)
Query: 151 IPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETV 210
+ GH V VA L N+G A +S S D + +W + + +C + GH + + +V
Sbjct: 63 LEGHSAFVSDVA-LSNNGNFA--VSASWDHSLRLWNLQ----NGQCQYKFLGHTKDVLSV 115
Query: 211 TVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLIT 270
S +Q +GG D L++W+ K E SR
Sbjct: 116 AFSPDNRQIVSGGRDNALRVWNV----------------------KGECMHTLSR----- 148
Query: 271 LKGHKEAISAVQWT-AVDE--IITSSWDHTLKIWDAELGGMKSEIVGNKSFF-DVHYSPL 326
H + +S V+++ ++D I++ WD+ +K+WD G + +++ G+ ++ V SP
Sbjct: 149 -GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD 207
Query: 327 SKLVITASADKQIRLYD-------PKVKEGA-IVKSTFSSHKEWV 363
L ++ D RL+D ++ GA I + FS ++ W+
Sbjct: 208 GSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWM 252
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 43/250 (17%)
Query: 151 IPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIH-----VCRGHER 205
+ GH G V +A +S S D+T + W + +S EC + GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 206 GLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSR 265
+ V +S + + WD L++W+ +NG + +Y
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNL----------QNG---------QCQYK----- 104
Query: 266 TPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKSEIVGNKS--FFDVH 322
GH + + +V ++ + +I++ D+ L++W+ + M + G + V
Sbjct: 105 -----FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR 159
Query: 323 YSPL--SKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS 380
+SP + ++++ D ++++D + G +V + H +V SV SP D L S+
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWD--LATGRLV-TDLKGHTNYVTSVTVSP-DGSLCASSD 215
Query: 381 FDNSVKLWDL 390
D +LWDL
Sbjct: 216 KDGVARLWDL 225
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 12/134 (8%)
Query: 267 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKSEIVGNKS-FFDVHYS 324
P L GH +S + + + I+SSWD TL++WD G VG++S + V +S
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 325 PLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQ---------L 375
P ++ +++A A+++I+L++ + E + +H +WV VR+SPI
Sbjct: 128 PDNRQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
Query: 376 FVSASFDNSVKLWD 389
F S +D +K+W+
Sbjct: 187 FASVGWDGRLKVWN 200
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 96/249 (38%), Gaps = 38/249 (15%)
Query: 173 FISVSTDQTAMIWE-WKVESNSIECI--HVCRGHERGLETVTVSESRQQFATGGWDCLLK 229
IS S D+T MIW+ ++ E N I GH + + +S+ + WD L+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 230 IW----SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKG-----------H 274
+W + G SE + R+ + A L + G H
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 275 KEAISAVQWTAVDE-----------IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHY 323
+ +S V+++ + + + WD LK+W+ + + +
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSI 221
Query: 324 SPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHK-EWVQSVRWSPIDPQL-FVSASF 381
SP K + T DK++ ++D I+ T+ + + ++ +P+L +V+
Sbjct: 222 SPNGKYIATGGKDKKLLIWD-------ILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT 274
Query: 382 DNSVKLWDL 390
D VK+++L
Sbjct: 275 DQGVKIFNL 283
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 133/315 (42%), Gaps = 49/315 (15%)
Query: 115 HDDWVSAIDFHNDW--ILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H V+ + FH + +++ D ++ +W G+ + + GH V+ +++ D
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF---DHSGK 163
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
S S D T +W+++ ECI GH+ + +V++ + + D +K+W
Sbjct: 164 LLASCSADMTIKLWDFQ----GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 232 SADISK------------ERGDPSENGDE-GTTSKKRKKEYSSASSRTPLITLKGHKEAI 278
P+++G + S + +++ L+ H+ +
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 279 SAVQW------TAVDE---------------IITSSWDHTLKIWDAELGGMKSEIVGNKS 317
+ W +++ E +++ S D T+K+WD G +VG+ +
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339
Query: 318 FF-DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLF 376
+ V + K +++ + DK +R++D K K T ++H+ +V S+ + P +
Sbjct: 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CMKTLNAHEHFVTSLDFHKTAPYV- 395
Query: 377 VSASFDNSVKLWDLR 391
V+ S D +VK+W+ R
Sbjct: 396 VTGSVDQTVKVWECR 410
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 271 LKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSPLSK 328
L GH+ ++ V + V ++ S S D T+K+WD E G + + G+ S D+ + K
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
L+ + SAD I+L+D +G T H V SV P + VSAS D ++K+W
Sbjct: 164 LLASCSADMTIKLWDF---QGFECIRTMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMW 219
Query: 389 DLR 391
+++
Sbjct: 220 EVQ 222
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 125/297 (42%), Gaps = 45/297 (15%)
Query: 119 VSAIDFHNDWILTGCYDHSVHIWTRRG-EHKLNIPGHGGPVKGVAWLYNDGKDAAFISVS 177
V + + + I++G D+++ IW + E K + GH G V + + + I+ S
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-----DERVIITGS 190
Query: 178 TDQTAMIWEWKVESNSIECIHVCRG--HERGLETVTVSESRQQFATGGWDCLLKIWSADI 235
+D T +W+ IH C H R + V+ S+ + + WD DI
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR-SIAVWD---MASPTDI 246
Query: 236 SKERGDPSENGDEGTTSKKRKKEYSSASSRTPLI----------TLKGHKEAISAVQWTA 285
+ R K S++ RT + TL GHK I+ +Q+
Sbjct: 247 TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR- 305
Query: 286 VDEIITS-SWDHTLKIWDAELGGMKSEIVGNKSF-----FDVHYSPLSKLVITASADKQI 339
D ++ S S D+T+++WD E G + G++ FD +K +++ + D +I
Sbjct: 306 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD------NKRIVSGAYDGKI 358
Query: 340 RLY------DPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
+++ DP+ G + T H V +++ D VS+S D+++ +WD
Sbjct: 359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWDF 412
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 40/205 (19%)
Query: 187 WKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENG 246
W+ +S++ IH +G+ + + Q+ +G D +KIW
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCLQYDD--QKIVSGLRDNTIKIW--------------- 158
Query: 247 DEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAE 304
D+ T KR L GH ++ +Q+ DE IIT S D T+++WD
Sbjct: 159 DKNTLECKR--------------ILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVN 201
Query: 305 LGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQ 364
G M + ++ + +H + +++T S D+ I ++D ++ H+ V
Sbjct: 202 TGEMLNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260
Query: 365 SVRWSPIDPQLFVSASFDNSVKLWD 389
V D + VSAS D ++K+W+
Sbjct: 261 VV---DFDDKYIVSASGDRTIKVWN 282
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 35/203 (17%)
Query: 103 STPTPSPLDCIL--HDDWVSAIDFHNDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVK 159
++PT L +L H V+ +DF + +I++ D ++ +W T E + GH +
Sbjct: 241 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---R 297
Query: 160 GVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQF 219
G+A L +D +S S+D T +W+ +E + C+ V GHE + + R
Sbjct: 298 GIACL--QYRDRLVVSGSSDNTIRLWD--IECGA--CLRVLEGHEELVRCIRFDNKR--I 349
Query: 220 ATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAIS 279
+G +D +K+W + + P+ GT L TL H +
Sbjct: 350 VSGAYDGKIKVWDLVAALDPRAPA-----GTLC---------------LRTLVEHSGRVF 389
Query: 280 AVQWTAVDEIITSSWDHTLKIWD 302
+Q+ +I++SS D T+ IWD
Sbjct: 390 RLQFDEF-QIVSSSHDDTILIWD 411
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 113/307 (36%), Gaps = 52/307 (16%)
Query: 129 ILTGCY-DHSVHIWTRRGE----HKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAM 183
+L C D + IW G+ + GH V+ VAW S S D T
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY---LASASFDATTC 86
Query: 184 IWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERG--- 240
IW K + EC+ GHE +++V + S AT D + +W D E
Sbjct: 87 IW--KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS 144
Query: 241 --------------DPSENGDEGTTSKKRKKEYSSASSR-TPLITLKGHKEAISAVQWTA 285
PS+ + K Y TL+GH+ + ++ +
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Query: 286 VDEIITS-SWDHTLKIWDAELGGMKSEIVG-----------------NKSFFDVHYSPLS 327
+ + S S D T++IW L G + + +++ +D+ + L+
Sbjct: 205 SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT 264
Query: 328 KLVITASADKQIRLY------DPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 381
+ TA D IR++ DP+ ++ +H + V V W+P +P L S S
Sbjct: 265 GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324
Query: 382 DNSVKLW 388
D V W
Sbjct: 325 DGEVAFW 331
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 274 HKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSK--- 328
H+ ++ VQW D +SS+D TLK+WD ++ + H SP+S
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
LV + +++L D +K G+ H++ + +V WSP + +AS D+ VKLW
Sbjct: 158 LVAVGTRGPKVQLCD--LKSGS-CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
Query: 389 DLR 391
D+R
Sbjct: 215 DVR 217
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 23/103 (22%)
Query: 271 LKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDA-----------ELGGMKSEIVGNKS 317
L+GH++ I AV W+ + I T+S D +K+WD + G KS+ V +S
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV--ES 239
Query: 318 FFDVHYSPLSKL--------VITASADKQIRLYDPKVKEGAIV 352
H ++ L ++T D ++RL++ E +V
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV 282
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 115 HDDWVSAIDFHNDWI--LTGCYDHSVHIW-TRRGEHKLNIPGH--GGPVKGVAWLYNDGK 169
H+ V+ + F +D + LT D+ + +W + GE+ L G KG+ + + G
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303
Query: 170 DAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLK 229
+ F+ V T ++ S E I + +GH + ++ + Q+ +G DC +
Sbjct: 304 SSEFVFVPYGSTIAVYTVY----SGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359
Query: 230 IWSADISKERGDPSENGDEGTTSKKRKKEYSSA 262
W + +P + DE TT + + A
Sbjct: 360 AWVPSLY----EPVPDDDETTTKSQLNPAFEDA 388
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 44/256 (17%)
Query: 138 VHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAF-ISVSTDQTAMIWEWKVESNSIEC 196
+ + TRR + GH + + W G D+ +S S D +IW+ S +
Sbjct: 43 IQMRTRR-----TLRGHLAKIYAMHW----GTDSRLLVSASQDGKLIIWD----SYTTNK 89
Query: 197 IHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRK 256
+H + T + S A GG D + I++ K R EG R+
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL---KTR--------EGNVRVSRE 138
Query: 257 KEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNK 316
L GH +S ++ ++I+TSS D T +WD E G + G+
Sbjct: 139 --------------LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 317 S-FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQL 375
+ +P ++L ++ + D +L+D V+EG + + TF+ H+ + ++ + P +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWD--VREG-MCRQTFTGHESDINAICFFP-NGNA 240
Query: 376 FVSASFDNSVKLWDLR 391
F + S D + +L+DLR
Sbjct: 241 FATGSDDATCRLFDLR 256
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAA 172
H+ ++AI F + + TG D + ++ R + +L H + G+ +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 173 FISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
++ D +W+ + V GH+ + + V++ ATG WD LKIW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRA----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 267 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKSEIVGNKS-FFDVHYS 324
P+ + KGH + TA +++SWD TL++WD G VG+KS V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 325 PLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPI-----DPQLFVSA 379
+ ++I+ S DK I+++ K + +T H +WV VR P D +SA
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 380 SFDNSVKLWDL 390
D VK W+L
Sbjct: 173 GNDKMVKAWNL 183
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 122 IDFHNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKD---AAFISVST 178
ID I++G D ++ +WT +G+ + GH V V + N+ D IS
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 179 DQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
D+ M+ W + IE + GH + T+T S A+ G D + +W+
Sbjct: 175 DK--MVKAWNLNQFQIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 117/293 (39%), Gaps = 67/293 (22%)
Query: 115 HDDWVSAIDF---HNDWILTGCYDHSVHIWTRRGE-HKLNIP-----GHGGPVKGVAWLY 165
H+ WV+++ + +L+ D ++ W G+ K +P GH V+ L
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LT 74
Query: 166 NDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWD 225
DG A +S S D+T +W+ + E GH+ + +V + + +G D
Sbjct: 75 ADGAYA--LSASWDKTLRLWD----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 226 CLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTA 285
+K+W+ +G L TL GH + +S V+
Sbjct: 129 KTIKVWTI-----KGQ-------------------------CLATLLGHNDWVSQVRVVP 158
Query: 286 VDE-------IITSSWDHTLKIWDAELGGMKSEIVGNKSFFD-VHYSPLSKLVITASADK 337
++ II++ D +K W+ ++++ +G+ S + + SP L+ +A D
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 338 QIRLYDPKVKEGAIVKS--------TFSSHKEWVQS-----VRWSPIDPQLFV 377
+I L++ K+ S FS ++ W+ + ++ +DPQ V
Sbjct: 219 EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 351 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
+++ T H WV S+ S P L +SAS D ++ W L
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 267 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKSEIVGNKS-FFDVHYS 324
P+ + KGH + TA +++SWD TL++WD G VG+KS V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 325 PLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPI-----DPQLFVSA 379
+ ++I+ S DK I+++ K + +T H +WV VR P D +SA
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 380 SFDNSVKLWDL 390
D VK W+L
Sbjct: 173 GNDKMVKAWNL 183
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 122 IDFHNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKD---AAFISVST 178
ID I++G D ++ +WT +G+ + GH V V + N+ D IS
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 179 DQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
D+ M+ W + IE + GH + T+T S A+ G D + +W+
Sbjct: 175 DK--MVKAWNLNQFQIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 116/293 (39%), Gaps = 67/293 (22%)
Query: 115 HDDWVSAIDF---HNDWILTGCYDHSVHIWTRRGE-HKLNIP-----GHGGPVKGVAWLY 165
H+ WV+++ + +L+ D ++ W G+ K +P GH V+ L
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LT 74
Query: 166 NDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWD 225
DG A +S S D+T +W+ E GH+ + +V + + +G D
Sbjct: 75 ADGAYA--LSASWDKTLRLWDVATG----ETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 226 CLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTA 285
+K+W+ +G L TL GH + +S V+
Sbjct: 129 KTIKVWTI-----KGQ-------------------------CLATLLGHNDWVSQVRVVP 158
Query: 286 VDE-------IITSSWDHTLKIWDAELGGMKSEIVGNKSFFD-VHYSPLSKLVITASADK 337
++ II++ D +K W+ ++++ +G+ S + + SP L+ +A D
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 338 QIRLYDPKVKEGAIVKS--------TFSSHKEWVQS-----VRWSPIDPQLFV 377
+I L++ K+ S FS ++ W+ + ++ +DPQ V
Sbjct: 219 EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 351 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
+++ T H WV S+ S P L +SAS D ++ W L
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 44/256 (17%)
Query: 138 VHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAF-ISVSTDQTAMIWEWKVESNSIEC 196
+ + TRR + GH + + W G D+ +S S D +IW+ S +
Sbjct: 54 IQMRTRR-----TLRGHLAKIYAMHW----GTDSRLLVSASQDGKLIIWD----SYTTNK 100
Query: 197 IHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRK 256
+H + T + S A GG D + I++ K R EG R+
Sbjct: 101 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL---KTR--------EGNVRVSRE 149
Query: 257 KEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNK 316
L GH +S ++ ++I+TSS D T +WD E G + G+
Sbjct: 150 --------------LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 195
Query: 317 S-FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQL 375
+ +P ++L ++ + D +L+D V+EG + + TF+ H+ + ++ + P +
Sbjct: 196 GDVMSLSLAPDTRLFVSGACDASAKLWD--VREG-MCRQTFTGHESDINAICFFP-NGNA 251
Query: 376 FVSASFDNSVKLWDLR 391
F + S D + +L+DLR
Sbjct: 252 FATGSDDATCRLFDLR 267
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAA 172
H+ ++AI F + + TG D + ++ R + +L H + G+ +
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 295
Query: 173 FISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
++ D +W+ + V GH+ + + V++ ATG WD LKIW+
Sbjct: 296 LLAGYDDFNCNVWDALKADRA----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 44/256 (17%)
Query: 138 VHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAF-ISVSTDQTAMIWEWKVESNSIEC 196
+ + TRR + GH + + W G D+ +S S D +IW+ S +
Sbjct: 43 IQMRTRR-----TLRGHLAKIYAMHW----GTDSRLLVSASQDGKLIIWD----SYTTNK 89
Query: 197 IHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRK 256
+H + T + S A GG D + I++ K R EG R+
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL---KTR--------EGNVRVSRE 138
Query: 257 KEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNK 316
L GH +S ++ ++I+TSS D T +WD E G + G+
Sbjct: 139 --------------LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 317 S-FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQL 375
+ +P ++L ++ + D +L+D V+EG + + TF+ H+ + ++ + P +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWD--VREG-MCRQTFTGHESDINAICFFP-NGNA 240
Query: 376 FVSASFDNSVKLWDLR 391
F + S D + +L+DLR
Sbjct: 241 FATGSDDATCRLFDLR 256
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAA 172
H+ ++AI F + + TG D + ++ R + +L H + G+ +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 173 FISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
++ D +W+ + V GH+ + + V++ ATG WD LKIW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRA----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 267 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKSEIVGNKS-FFDVHYS 324
P+ + KGH + TA +++SWD TL++WD G VG+KS V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 325 PLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPI-----DPQLFVSA 379
+ ++I+ S DK I+++ K + +T H +WV VR P D +SA
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 380 SFDNSVKLWDL 390
D VK W+L
Sbjct: 173 GNDKMVKAWNL 183
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 122 IDFHNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKD---AAFISVST 178
ID I++G D ++ +WT +G+ + GH V V + N+ D IS
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 179 DQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
D+ M+ W + IE + GH + T+T S A+ G D + +W+
Sbjct: 175 DK--MVKAWNLNQFQIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 117/293 (39%), Gaps = 67/293 (22%)
Query: 115 HDDWVSAIDF---HNDWILTGCYDHSVHIWTRRGE-HKLNIP-----GHGGPVKGVAWLY 165
H+ WV+++ + +L+ D ++ W G+ K +P GH V+ L
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LT 74
Query: 166 NDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWD 225
DG A +S S D+T +W+ + E GH+ + +V + + +G D
Sbjct: 75 ADGAYA--LSASWDKTLRLWD----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 226 CLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTA 285
+K+W+ +G L TL GH + +S V+
Sbjct: 129 KTIKVWTI-----KGQ-------------------------CLATLLGHNDWVSQVRVVP 158
Query: 286 VDE-------IITSSWDHTLKIWDAELGGMKSEIVGNKSFFD-VHYSPLSKLVITASADK 337
++ II++ D +K W+ ++++ +G+ S + + SP L+ +A D
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 338 QIRLYDPKVKEGAIVKS--------TFSSHKEWVQS-----VRWSPIDPQLFV 377
+I L++ K+ S FS ++ W+ + ++ +DPQ V
Sbjct: 219 EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 348 EGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
E +++ T H WV S+ S P L +SAS D ++ W L
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 267 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKSEIVGNKS-FFDVHYS 324
P+ + KGH + TA +++SWD TL++WD G VG+KS V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 325 PLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPI-----DPQLFVSA 379
+ ++I+ S DK I+++ K + +T H +WV VR P D +SA
Sbjct: 117 KKASMIISGSRDKTIKVWTIKGQ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 380 SFDNSVKLWDL 390
D VK W+L
Sbjct: 173 GNDKMVKAWNL 183
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 122 IDFHNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKD---AAFISVST 178
ID I++G D ++ +WT +G+ + GH V V + N+ D IS
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 179 DQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
D+ M+ W + IE + GH + T+T S A+ G D + +W+
Sbjct: 175 DK--MVKAWNLNQFQIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 117/293 (39%), Gaps = 67/293 (22%)
Query: 115 HDDWVSAIDF---HNDWILTGCYDHSVHIWTRRGE-HKLNIP-----GHGGPVKGVAWLY 165
H+ WV+++ + +L+ D ++ W G+ K +P GH V+ L
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LT 74
Query: 166 NDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWD 225
DG A +S S D+T +W+ + E GH+ + +V + + +G D
Sbjct: 75 ADGAYA--LSASWDKTLRLWD----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 226 CLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTA 285
+K+W+ +G L TL GH + +S V+
Sbjct: 129 KTIKVWTI-----KGQ-------------------------CLATLLGHNDWVSQVRVVP 158
Query: 286 VDE-------IITSSWDHTLKIWDAELGGMKSEIVGNKSFFD-VHYSPLSKLVITASADK 337
++ II++ D +K W+ ++++ +G+ S + + SP L+ +A D
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 338 QIRLYDPKVKEGAIVKS--------TFSSHKEWVQS-----VRWSPIDPQLFV 377
+I L++ K+ S FS ++ W+ + ++ +DPQ V
Sbjct: 219 EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 348 EGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
E +++ T H WV S+ S P L +SAS D ++ W L
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 267 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKSEIVGNKS-FFDVHYS 324
P+ + KGH + TA +++SWD TL++WD G VG+KS V
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 325 PLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPI-----DPQLFVSA 379
+ ++I+ S DK I+++ K + +T H +WV VR P D +SA
Sbjct: 111 KKASMIISGSRDKTIKVWTIKGQ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 166
Query: 380 SFDNSVKLWDL 390
D VK W+L
Sbjct: 167 GNDKMVKAWNL 177
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 122 IDFHNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKD---AAFISVST 178
ID I++G D ++ +WT +G+ + GH V V + N+ D IS
Sbjct: 109 IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 168
Query: 179 DQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
D+ M+ W + IE + GH + T+T S A+ G D + +W+
Sbjct: 169 DK--MVKAWNLNQFQIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 117/293 (39%), Gaps = 67/293 (22%)
Query: 115 HDDWVSAIDF---HNDWILTGCYDHSVHIWTRRGE-HKLNIP-----GHGGPVKGVAWLY 165
H+ WV+++ + +L+ D ++ W G+ K +P GH V+ L
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LT 68
Query: 166 NDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWD 225
DG A +S S D+T +W+ + E GH+ + +V + + +G D
Sbjct: 69 ADGAYA--LSASWDKTLRLWD----VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 226 CLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTA 285
+K+W+ +G L TL GH + +S V+
Sbjct: 123 KTIKVWTI-----KGQ-------------------------CLATLLGHNDWVSQVRVVP 152
Query: 286 VDE-------IITSSWDHTLKIWDAELGGMKSEIVGNKSFFD-VHYSPLSKLVITASADK 337
++ II++ D +K W+ ++++ +G+ S + + SP L+ +A D
Sbjct: 153 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 212
Query: 338 QIRLYDPKVKEGAIVKS--------TFSSHKEWVQS-----VRWSPIDPQLFV 377
+I L++ K+ S FS ++ W+ + ++ +DPQ V
Sbjct: 213 EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 265
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 351 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
+++ T H WV S+ S P L +SAS D ++ W L
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 41
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 44/256 (17%)
Query: 138 VHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAFI-SVSTDQTAMIWEWKVESNSIEC 196
+ + TRR + GH + + W G D+ + S S D +IW+ S +
Sbjct: 43 IQMRTRR-----TLRGHLAKIYAMHW----GTDSRLLLSASQDGKLIIWD----SYTTNK 89
Query: 197 IHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRK 256
+H + T + S A GG D + I++ K R EG R+
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL---KTR--------EGNVRVSRE 138
Query: 257 KEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNK 316
L GH +S ++ ++I+TSS D T +WD E G + G+
Sbjct: 139 --------------LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 317 S-FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQL 375
+ +P ++L ++ + D +L+D V+EG + + TF+ H+ + ++ + P +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWD--VREG-MCRQTFTGHESDINAICFFP-NGNA 240
Query: 376 FVSASFDNSVKLWDLR 391
F + S D + +L+DLR
Sbjct: 241 FATGSDDATCRLFDLR 256
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAA 172
H+ ++AI F + + TG D + ++ R + +L H + G+ +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 173 FISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
++ D +W+ + V GH+ + + V++ ATG WD LKIW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRA----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 44/256 (17%)
Query: 138 VHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAAFI-SVSTDQTAMIWEWKVESNSIEC 196
+ + TRR + GH + + W G D+ + S S D +IW+ S +
Sbjct: 43 IQMRTRR-----TLRGHLAKIYAMHW----GTDSRLLLSASQDGKLIIWD----SYTTNK 89
Query: 197 IHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRK 256
+H + T + S A GG D + I++ K R EG R+
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL---KTR--------EGNVRVSRE 138
Query: 257 KEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNK 316
L GH +S ++ ++I+TSS D T +WD E G + G+
Sbjct: 139 --------------LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 317 S-FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQL 375
+ +P ++L ++ + D +L+D V+EG + + TF+ H+ + ++ + P +
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWD--VREG-MCRQTFTGHESDINAICFFP-NGNA 240
Query: 376 FVSASFDNSVKLWDLR 391
F + S D + +L+DLR
Sbjct: 241 FATGSDDATCRLFDLR 256
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 115 HDDWVSAIDF--HNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDAA 172
H+ ++AI F + + TG D + ++ R + +L H + G+ +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 173 FISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
++ D +W+ + V GH+ + + V++ ATG WD LKIW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRA----GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 267 PLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKSEIVGNKS-FFDVHYS 324
P+ + KGH + TA +++SWD TL++WD G VG+KS V
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 325 PLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPI-----DPQLFVSA 379
+ +I+ S DK I+++ K + +T H +WV VR P D +SA
Sbjct: 117 KKASXIISGSRDKTIKVWTIKGQ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 380 SFDNSVKLWDL 390
D VK W+L
Sbjct: 173 GNDKXVKAWNL 183
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 122 IDFHNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKD---AAFISVST 178
ID I++G D ++ +WT +G+ + GH V V + N+ D IS
Sbjct: 115 IDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 179 DQTAMIW---EWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
D+ W ++++E++ I GH + T+T S A+ G D + +W+
Sbjct: 175 DKXVKAWNLNQFQIEADFI-------GHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 117/293 (39%), Gaps = 67/293 (22%)
Query: 115 HDDWVSAIDF---HNDWILTGCYDHSVHIWTRRGE-HKLNIP-----GHGGPVKGVAWLY 165
H+ WV+++ + +L+ D ++ W G+ K +P GH V+ L
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT-LT 74
Query: 166 NDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWD 225
DG A +S S D+T +W+ + E GH+ + +V + + +G D
Sbjct: 75 ADGAYA--LSASWDKTLRLWD----VATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 226 CLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTA 285
+K+W+ +G L TL GH + +S V+
Sbjct: 129 KTIKVWTI-----KGQ-------------------------CLATLLGHNDWVSQVRVVP 158
Query: 286 VDE-------IITSSWDHTLKIWDAELGGMKSEIVGNKSFFD-VHYSPLSKLVITASADK 337
++ II++ D +K W+ ++++ +G+ S + + SP L+ +A D
Sbjct: 159 NEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 338 QIRLYDPKVKEGAIVKS--------TFSSHKEWVQS-----VRWSPIDPQLFV 377
+I L++ K+ S FS ++ W+ + ++ +DPQ V
Sbjct: 219 EIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 351 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
+++ T H WV S+ S P L +SAS D ++ W L
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL 47
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 207 LETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRT 266
+ +V S + ATG D L++IW DI EN R
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIW--DI--------EN-------------------RK 156
Query: 267 PLITLKGHKEAISAVQW-TAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSP 325
++ L+GH++ I ++ + + D++++ S D T++IWD G + V SP
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 216
Query: 326 L-SKLVITASADKQIRLYDPKVKEGAIVKS------TFSSHKEWVQSVRWSPIDPQLFVS 378
K + S D+ +R++D + G +V+ + + HK+ V SV ++ D Q VS
Sbjct: 217 GDGKYIAAGSLDRAVRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVS 273
Query: 379 ASFDNSVKLWDLR 391
S D SVKLW+L+
Sbjct: 274 GSLDRSVKLWNLQ 286
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 100/237 (42%), Gaps = 49/237 (20%)
Query: 170 DAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLK 229
D F++ + +I W +E+ I + + +GHE+ + ++ S + +G D ++
Sbjct: 134 DGKFLATGAEDR-LIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 230 IWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEI 289
IW D+ + + + ++G T+ + G + I+A
Sbjct: 191 IW--DLRTGQCSLTLSIEDGVTT---------------VAVSPGDGKYIAA--------- 224
Query: 290 ITSSWDHTLKIWDAELGGMKSEI-------VGNK-SFFDVHYSPLSKLVITASADKQIRL 341
S D +++WD+E G + + G+K S + V ++ + V++ S D+ ++L
Sbjct: 225 --GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282
Query: 342 Y---------DPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 389
+ D K + T+ HK++V SV + D + +S S D V WD
Sbjct: 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWD 338
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 36/246 (14%)
Query: 115 HDDWVSAIDFH--NDWILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H+ + ++D+ D +++G D +V IW R G+ L + G V VA DGK
Sbjct: 164 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYI 222
Query: 172 AFISVSTDQTAMIWE----WKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCL 227
A + S D+ +W+ + VE E GH+ + +V + Q +G D
Sbjct: 223 A--AGSLDRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 228 LKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVD 287
+K+W+ +N + + SK + +S T +T GHK+ + +V T D
Sbjct: 280 VKLWNL----------QNANNKSDSK-------TPNSGTCEVTYIGHKDFVLSVATTQND 322
Query: 288 E-IITSSWDHTLKIWDAELG-------GMKSEIVGNKSFFDVHYSPLSKLVITASADKQI 339
E I++ S D + WD + G G ++ ++ P + T S D +
Sbjct: 323 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 382
Query: 340 RLYDPK 345
R++ K
Sbjct: 383 RIWKYK 388
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 274 HKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKSEIVGNKS---FFDVHYSPLSKL 329
H +SA +T D +I+T+S D T +WD E G + G+ + D+ S
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 389
++ DK+ ++D ++ G V++ F +H+ V SVR+ P F S S D + +L+D
Sbjct: 213 FVSGGCDKKAMVWD--MRSGQCVQA-FETHESDVNSVRYYP-SGDAFASGSDDATCRLYD 268
Query: 390 LR 391
LR
Sbjct: 269 LR 270
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 28/209 (13%)
Query: 114 LHDDWVSAIDFHND--WILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKD 170
+H +++SA F N ILT D + +W G+ + GHG V + ++ +
Sbjct: 152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211
Query: 171 AAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKI 230
F+S D+ AM+W+ + S +C+ HE + +V S FA+G D ++
Sbjct: 212 T-FVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 231 WSADISKERGDPSENG--------DEGTTSKKRKKEYSSAS---------SRTPLITLKG 273
+ +E S+ D + + Y+ + SR + L G
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI--LFG 324
Query: 274 HKEAISAVQWTAVDEIITS-SWDHTLKIW 301
H+ +S ++ + S SWDHTL++W
Sbjct: 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWS 232
GHE + T+ VS F +G WD L++W+
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 45/252 (17%)
Query: 151 IPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETV 210
+ GH G V + W + +S S D ++W + H + H +
Sbjct: 62 LQGHSGKVYSLDWTP---EKNWIVSASQDGRLIVWNALTSQKT----HAIKLHCPWVMEC 114
Query: 211 TVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLIT 270
+ + Q A GG D I++ +R +G R
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADR--------DGNMPVSR--------------V 152
Query: 271 LKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPL-- 326
L GHK S+ Q+ E +IT S D T +WD G + I G++ F H + +
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGSE-FPSGHTADVLS 210
Query: 327 -------SKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
+ + I+ S D +RL+D ++ A+ T+ H+ + SV++ P D Q F +
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAV--RTYHGHEGDINSVKFFP-DGQRFGTG 267
Query: 380 SFDNSVKLWDLR 391
S D + +L+D+R
Sbjct: 268 SDDGTCRLFDMR 279
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 257 KEYSSASSRTPLI----------TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 305
++YS A RT + TL+GH + ++ WT I+++S D L +W+A L
Sbjct: 38 EKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA-L 96
Query: 306 GGMKSEIVGNKS--FFDVHYSPLSKLVITASADKQIRLYDPKV---KEGAI-VKSTFSSH 359
K+ + + ++P + V D +++ ++G + V + H
Sbjct: 97 TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH 156
Query: 360 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
K + S ++ P ++ S D + LWD+
Sbjct: 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDV 187
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 32/202 (15%)
Query: 129 ILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLY----NDGKDAAFISVSTDQTAMI 184
++TG D + +W +++I G P A + N FIS S D T +
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 185 WEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKE----RG 240
W+ ++ S ++ H GHE + +V Q+F TG D +++ +
Sbjct: 233 WDLRITSRAVRTYH---GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289
Query: 241 DPSENGDE---------GTTSKKRKKEYSS----------ASSRTPLITLKG-HKEAISA 280
+P N +E + + YS+ A L TL+ H+ IS
Sbjct: 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349
Query: 281 VQWTA-VDEIITSSWDHTLKIW 301
+ ++ + T SWD LKIW
Sbjct: 350 LGLSSDGSALCTGSWDKNLKIW 371
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 47/202 (23%)
Query: 199 VCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKE 258
V R H + S+ Q+ A+ G D L+++ A E G++
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA----------ETGEK---------- 656
Query: 259 YSSASSRTPLITLKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGM------KSE 311
L+ +K H++ + +++ D I T S D +KIWD+ G + SE
Sbjct: 657 ---------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE 707
Query: 312 IVGNKSFFDVHYSPLSK--LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWS 369
V H++ S L+ T S D ++L+D KE ++T H V R+S
Sbjct: 708 QVNC-----CHFTNKSNHLLLATGSNDFFLKLWDLNQKE---CRNTMFGHTNSVNHCRFS 759
Query: 370 PIDPQLFVSASFDNSVKLWDLR 391
P D +L S S D +++LWD+R
Sbjct: 760 P-DDELLASCSADGTLRLWDVR 780
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 110/287 (38%), Gaps = 30/287 (10%)
Query: 110 LDCILHDDWVSAIDFHND--WILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYND 167
LD H+D V F +D +I T D V IW ++ N
Sbjct: 658 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 717
Query: 168 GKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCL 227
+ S D +W+ N EC + GH + S + A+ D
Sbjct: 718 SNHLLLATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 773
Query: 228 LKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTA-V 286
L++W + ER + K + +S P + + + W+A
Sbjct: 774 LRLWDVRSANERKSIN------------VKRFFLSSEDPP----EDVEVIVKCCSWSADG 817
Query: 287 DEIITSSWDHTLKIWDAELGGMKSEI-VGNKSFFD-VHYSPLSKLVITASADKQIRLYDP 344
D+II ++ + L ++D G+ +EI G+ S +SP L + A + + L++
Sbjct: 818 DKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 876
Query: 345 KVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
+ + + H WV V +SP D F++AS D ++++W+ +
Sbjct: 877 ---DSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETK 919
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVI 331
GHK+A+ +Q+TA + +I+SS D +++W+ + G ++ D S+L +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRL-L 1066
Query: 332 TASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
+ S D +++++ V G I + F+ H+ V S S D F S S D + K+W
Sbjct: 1067 SWSFDGTVKVWN--VITGRIERD-FTCHQGTVLSCAISS-DATKFSSTSADKTAKIW 1119
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 129 ILTGCYDHSVHIWTR-RGEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEW 187
+L+ +D +V +W G + + H G V A + K F S S D+TA IW +
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATK---FSSTSADKTAKIWSF 1121
Query: 188 KVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS----------ADISK 237
+ S +H +GH + S ATG + ++IW+ A IS
Sbjct: 1122 DLLSP----LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1177
Query: 238 ERGDPSENG 246
E G + G
Sbjct: 1178 EEGTATHGG 1186
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 47/202 (23%)
Query: 199 VCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKE 258
V R H + S+ Q+ A+ G D L+++ A E G++
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA----------ETGEK---------- 649
Query: 259 YSSASSRTPLITLKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGM------KSE 311
L+ +K H++ + +++ D I T S D +KIWD+ G + SE
Sbjct: 650 ---------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE 700
Query: 312 IVGNKSFFDVHYSPLSK--LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWS 369
V H++ S L+ T S D ++L+D KE ++T H V R+S
Sbjct: 701 QVNC-----CHFTNKSNHLLLATGSNDFFLKLWDLNQKE---CRNTMFGHTNSVNHCRFS 752
Query: 370 PIDPQLFVSASFDNSVKLWDLR 391
P D +L S S D +++LWD+R
Sbjct: 753 P-DDELLASCSADGTLRLWDVR 773
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 110/287 (38%), Gaps = 30/287 (10%)
Query: 110 LDCILHDDWVSAIDFHND--WILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYND 167
LD H+D V F +D +I T D V IW ++ N
Sbjct: 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710
Query: 168 GKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCL 227
+ S D +W+ N EC + GH + S + A+ D
Sbjct: 711 SNHLLLATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766
Query: 228 LKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTA-V 286
L++W + ER + K + +S P + + + W+A
Sbjct: 767 LRLWDVRSANERKSIN------------VKRFFLSSEDPP----EDVEVIVKCCSWSADG 810
Query: 287 DEIITSSWDHTLKIWDAELGGMKSEI-VGNKSFFD-VHYSPLSKLVITASADKQIRLYDP 344
D+II ++ + L ++D G+ +EI G+ S +SP L + A + + L++
Sbjct: 811 DKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
Query: 345 KVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
+ + + H WV V +SP D F++AS D ++++W+ +
Sbjct: 870 ---DSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETK 912
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 273 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVI 331
GHK+A+ +Q+TA + +I+SS D +++W+ + G ++ D S+L +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRL-L 1059
Query: 332 TASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
+ S D +++++ V G I + F+ H+ V S S D F S S D + K+W
Sbjct: 1060 SWSFDGTVKVWN--VITGRIERD-FTCHQGTVLSCAISS-DATKFSSTSADKTAKIW 1112
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 129 ILTGCYDHSVHIWTR-RGEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEW 187
+L+ +D +V +W G + + H G V A + K F S S D+TA IW +
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATK---FSSTSADKTAKIWSF 1114
Query: 188 KVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS----------ADISK 237
+ S +H +GH + S ATG + ++IW+ A IS
Sbjct: 1115 DLLSP----LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 238 ERGDPSENG 246
E G + G
Sbjct: 1171 EEGTATHGG 1179
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 109/240 (45%), Gaps = 29/240 (12%)
Query: 173 FISVSTDQTAMIWEWKVESNSIECIHV-CRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
+S S D++ ++W+ + + GH +E V +S Q +G WD L++W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 232 --SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITL---------------KGH 274
+A +S R D + + ++SR I L +GH
Sbjct: 458 DLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH 516
Query: 275 KEAISAVQW---TAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFFD-VHYSPLSKLV 330
++ +S V++ T I+++SWD T+K+W+ ++S + G+ + V SP L
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 331 ITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
+ D + L+D + EG + S ++ + ++ +SP + ++ A+ ++ +K+WDL
Sbjct: 577 ASGGKDGVVLLWD--LAEGKKLYSLEANSV--IHALCFSP--NRYWLCAATEHGIKIWDL 630
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 309 KSEIVGNKSFFDVHYSPLSKLVITASADKQI-----RLYDPKVKEGAIVKSTFSSHKEWV 363
K EI+ N + + VI A++ +Q G ++K T +H + V
Sbjct: 326 KGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMV 385
Query: 364 QSVRWSPID-PQLFVSASFDNSVKLWDL 390
++ +PID + VSAS D S+ LW L
Sbjct: 386 TAIA-TPIDNADIIVSASRDKSIILWKL 412
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 266 TPLITLKGHKEAISAVQWTA--VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFF---- 319
P + L+GH++ + W + ++++S DHT+ +WD G + +IV K+ F
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 320 ----DVHYSPLSKLVITASADKQ-IRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQ 374
DV + L + + + AD Q + ++D + + +H V + ++P
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 375 LFVSASFDNSVKLWDLR 391
+ + S D +V LWDLR
Sbjct: 290 ILATGSADKTVALWDLR 306
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 271 LKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGMKSEIVGNKS-FFDVH----- 322
GH + V W + E + S D L IWD +S S D H
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT-----RSNTTSKPSHLVDAHTAEVN 279
Query: 323 ---YSPLSKLVI-TASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 378
++P S+ ++ T SADK + L+D ++ + TF SHK+ + V WSP + + S
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWD--LRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 379 ASFDNSVKLWDL 390
+ D + +WDL
Sbjct: 338 SGTDRRLNVWDL 349
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 103/264 (39%), Gaps = 56/264 (21%)
Query: 149 LNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKV---ESNSIECIHVCRGHER 205
L + GH G++W N +S S D T +W+ E ++ + GH
Sbjct: 173 LRLRGHQKEGYGLSW--NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 230
Query: 206 GLETVT---VSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSA 262
+E V + ES F + D L IW D N TTSK
Sbjct: 231 VVEDVAWHLLHESL--FGSVADDQKLXIW---------DTRSN----TTSK--------- 266
Query: 263 SSRTPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKSEIVGNKS--- 317
P + H ++ + + E I T S D T+ +WD L +K ++ +S
Sbjct: 267 ----PSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD--LRNLKLKLHTFESHKD 320
Query: 318 -FFDVHYSPLSKLVITASA-DKQIRLYD-PKVKEGAIVKST----------FSSHKEWVQ 364
F VH+SP ++ ++ +S D+++ ++D K+ E + H +
Sbjct: 321 EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS 380
Query: 365 SVRWSPIDPQLFVSASFDNSVKLW 388
W+P +P + S S DN ++W
Sbjct: 381 DFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 266 TPLITLKGHKEAISAVQWTA--VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFF---- 319
P + L+GH++ + W + ++++S DHT+ +WD G + +IV K+ F
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 320 ----DVHYSPLSKLVITASADKQ-IRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQ 374
DV + L + + + AD Q + ++D + + +H V + ++P
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 375 LFVSASFDNSVKLWDLR 391
+ + S D +V LWDLR
Sbjct: 290 ILATGSADKTVALWDLR 306
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 271 LKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGMKSEIVGNKS-FFDVH----- 322
GH + V W + E + S D L IWD +S S D H
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT-----RSNTTSKPSHLVDAHTAEVN 279
Query: 323 ---YSPLSKLVI-TASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 378
++P S+ ++ T SADK + L+D ++ + TF SHK+ + V WSP + + S
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWD--LRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 379 ASFDNSVKLWDL 390
+ D + +WDL
Sbjct: 338 SGTDRRLNVWDL 349
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 106/284 (37%), Gaps = 75/284 (26%)
Query: 118 WVSAIDFHNDWILTGCYDHSVHIW-----TRRG---EHKLNIPGHGGPVKGVAWLYNDGK 169
W S + H +L+ DH+V +W + G + K GH V+ VAW
Sbjct: 187 WNSNLSGH---LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHL--LH 241
Query: 170 DAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSE-SRQQFATGGWDCLL 228
++ F SV+ DQ MIW+ + + S + H+ H + ++ + S ATG D +
Sbjct: 242 ESLFGSVADDQKLMIWDTRSNTTS-KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTV 300
Query: 229 KIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDE 288
+W K + L T + HK+ I V W+ +E
Sbjct: 301 ALWDLRNLKLK----------------------------LHTFESHKDEIFQVHWSPHNE 332
Query: 289 II--TSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKV 346
I +S D L +WD S+I +S D P L I +I
Sbjct: 333 TILASSGTDRRLNVWDL------SKIGEEQSAEDAEDGPPELLFIHGGHTAKI------- 379
Query: 347 KEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
S FS W+P +P + S S DN +++W +
Sbjct: 380 -------SDFS----------WNPNEPWVICSVSEDNIMQIWQM 406
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 21/238 (8%)
Query: 154 HGGPVKGVAWLYNDGKDA-AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTV 212
H + VAW N +++ ++ S D +W+W+ E ++ GH+ G+ +V +
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW--SLEGHQLGVVSVDI 88
Query: 213 SESRQQFATGGWDCLLKIWSADISKE-RGDPSENGDEGTTSKKRKKEYSSASSRTPLITL 271
S + A+ D +++W + K+ + + D T + +Y + + + +
Sbjct: 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148
Query: 272 ----KGHKEA--------ISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKSEIVGNK-S 317
G KE I ++ ++ + + S + D + I+D G + + G+
Sbjct: 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 208
Query: 318 FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQL 375
+ +SP S+L++TAS D I++YD + A + T S H WV +V + P D
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDV---QHANLAGTLSGHASWVLNVAFCPDDTHF 263
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 125 HNDWILTGCYDHSVHIWT------RRGEHKLN--IPGHGGPVKGVAWLYNDGKDAAFISV 176
H + G +D +V IW R E L I GH VKGVAW NDG A +
Sbjct: 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW-SNDGYYLA--TC 125
Query: 177 STDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADIS 236
S D++ IWE ECI V + H + ++ V S A+ +D ++IW
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW----- 180
Query: 237 KERGDPSE-----NGDEGTT 251
K+ D E NG EGT
Sbjct: 181 KDYDDDWECVAVLNGHEGTV 200
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 25/237 (10%)
Query: 173 FISVSTDQTAMIWEW-KVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
+S S D+T ++W+ + E+N RGH + V +S Q +G WD L++W
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 232 SADI-SKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITL-------------KGHKEA 277
+ R D + + + SR I L + H E
Sbjct: 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173
Query: 278 ISAVQWTAVDE---IITSSWDHTLKIWDAELGGMKSEIVGNKSFFD-VHYSPLSKLVITA 333
+S V+++ I++ WD +K+W+ +K+ +G+ + + V SP L +
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Query: 334 SADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
D Q L+D + EG + + + + ++ +SP + ++ A+ S+K+WDL
Sbjct: 234 GKDGQAMLWD--LNEGKHLYTL--DGGDIINALCFSP--NRYWLCAATGPSIKIWDL 284
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 342 YDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
+ + E ++ T H WV + +P P + +SAS D ++ +W L
Sbjct: 20 FQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL 68
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
Query: 121 AIDFHNDWILTGCYDHSVHIWTRRGEHKLNIP--GHGGPVKGVAWLYNDGKDAAFISVST 178
A N I++G D ++ +W G K + H V V + N I VS
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP---IIVSC 191
Query: 179 DQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKE 238
++ W + + ++ H+ GH L TVTVS A+GG D +W + K
Sbjct: 192 GWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 249
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 25/237 (10%)
Query: 173 FISVSTDQTAMIWEW-KVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
+S S D+T ++W+ + E+N RGH + V +S Q +G WD L++W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 232 SADI-SKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITL-------------KGHKEA 277
+ R D + + + SR I L + H E
Sbjct: 91 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 150
Query: 278 ISAVQWTAVDE---IITSSWDHTLKIWDAELGGMKSEIVGNKSFFD-VHYSPLSKLVITA 333
+S V+++ I++ WD +K+W+ +K+ +G+ + + V SP L +
Sbjct: 151 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 210
Query: 334 SADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
D Q L+D + EG + + + + ++ +SP + ++ A+ S+K+WDL
Sbjct: 211 GKDGQAMLWD--LNEGKHLYTL--DGGDIINALCFSP--NRYWLCAATGPSIKIWDL 261
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 346 VKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
+ E ++ T H WV + +P P + +SAS D ++ +W L
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL 45
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
Query: 121 AIDFHNDWILTGCYDHSVHIWTRRGEHKLNIP--GHGGPVKGVAWLYNDGKDAAFISVST 178
A N I++G D ++ +W G K + H V V + N I VS
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP---IIVSC 168
Query: 179 DQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKE 238
++ W + + ++ H+ GH L TVTVS A+GG D +W + K
Sbjct: 169 GWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH 226
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 266 TPLITLKGHKEAISAVQWTA--VDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFF---- 319
P + L+GH++ + W ++++S DHT+ +WD + ++V K+ F
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 320 ----DVHYSPLSKLVITASADKQ-IRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQ 374
DV + L + + + AD Q + ++D + + + +H V + ++P
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 375 LFVSASFDNSVKLWDLR 391
+ + S D +V LWDLR
Sbjct: 288 ILATGSADKTVALWDLR 304
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 271 LKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGMKSEIVGNKSF-FDVH----- 322
GH + V W + E + S D L IWD +S S D H
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDT-----RSNNTSKPSHSVDAHTAEVN 277
Query: 323 ---YSPLSKLVI-TASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 378
++P S+ ++ T SADK + L+D ++ + +F SHK+ + V+WSP + + S
Sbjct: 278 CLSFNPYSEFILATGSADKTVALWD--LRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 379 ASFDNSVKLWDL 390
+ D + +WDL
Sbjct: 336 SGTDRRLNVWDL 347
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 105/266 (39%), Gaps = 56/266 (21%)
Query: 149 LNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKV---ESNSIECIHVCRGHER 205
L + GH G++W N +S S D T +W+ E ++ + GH
Sbjct: 171 LRLRGHQKEGYGLSW--NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 228
Query: 206 GLETVT---VSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSA 262
+E V+ + ES F + D L IW + S
Sbjct: 229 VVEDVSWHLLHESL--FGSVADDQKLMIW--------------------------DTRSN 260
Query: 263 SSRTPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKSEIVGNKS--- 317
++ P ++ H ++ + + E I T S D T+ +WD L +K ++ +S
Sbjct: 261 NTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD--LRNLKLKLHSFESHKD 318
Query: 318 -FFDVHYSPLSKLVITASA-DKQIRLYD---------PKVKEGAIVKSTF--SSHKEWVQ 364
F V +SP ++ ++ +S D+++ ++D P+ E + F H +
Sbjct: 319 EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS 378
Query: 365 SVRWSPIDPQLFVSASFDNSVKLWDL 390
W+P +P + S S DN +++W +
Sbjct: 379 DFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 267 PLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKSEIVGNKSFF----- 319
P + L+GH++ + W ++++S DHT+ +WD + ++ K+ F
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 320 ---DVHYSPLSKLVITASADKQ-IRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQL 375
DV + L + + + AD Q + ++D + + T +H V + ++P +
Sbjct: 237 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 296
Query: 376 FVSASFDNSVKLWDLR 391
+ S D +V LWDLR
Sbjct: 297 LATGSADKTVALWDLR 312
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 271 LKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGMKSEIVGNKSFFDVH------ 322
GH + V W + E + S D L IWD + D H
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR----NNNTSKPSHTVDAHTAEVNC 286
Query: 323 --YSPLSKLVI-TASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
++P S+ ++ T SADK + L+D ++ + +F SHK+ + V+WSP + + S+
Sbjct: 287 LSFNPYSEFILATGSADKTVALWD--LRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 344
Query: 380 SFDNSVKLWDL 390
D + +WDL
Sbjct: 345 GTDRRLHVWDL 355
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 107/276 (38%), Gaps = 72/276 (26%)
Query: 126 NDWILTGCYDHSVHIWTRRG---EHKL----NI-PGHGGPVKGVAWLYNDGKDAAFISVS 177
N ++L+ DH++ +W EH++ NI GH V+ VAW ++ F SV+
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL--LHESLFGSVA 255
Query: 178 TDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSE-SRQQFATGGWDCLLKIWSADIS 236
DQ MIW+ + +N+ + H H + ++ + S ATG D + +W
Sbjct: 256 DDQKLMIWDTR-NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--- 311
Query: 237 KERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEII--TSSW 294
+ + L + + HK+ I VQW+ +E I +S
Sbjct: 312 -------------------------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 295 DHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKS 354
D L +WD S+I +S D P L I +I S
Sbjct: 347 DRRLHVWDL------SKIGEEQSTEDAEDGPPELLFIHGGHTAKI--------------S 386
Query: 355 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
FS W+P +P + S S DN +++W +
Sbjct: 387 DFS----------WNPNEPWIICSVSEDNIMQVWQM 412
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 265 RTPLITLKGHKEAISAVQW--TAVDEIITSSWDHTLKIWDAELGGMKSEI---VGNKSFF 319
R P+ITL+GH + + V W TA + ++++ D+ + +WD G + V + +
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
V +S L+ T+ DK++R+ +P ++G +V H E + V + ++
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEP--RKGTVVAEKDRPH-EGTRPVHAVFVSEGKILTT 237
Query: 380 SF----DNSVKLWDLR 391
F + V LWD +
Sbjct: 238 GFSRMSERQVALWDTK 253
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 41/127 (32%)
Query: 266 TPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHY 323
PL+ GH + + W ++ I + S D T+ +W+ GG+
Sbjct: 74 VPLVC--GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL--------------V 117
Query: 324 SPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 383
PL + VIT H + V V W P + +SA DN
Sbjct: 118 LPLREPVIT-----------------------LEGHTKRVGIVAWHPTAQNVLLSAGCDN 154
Query: 384 SVKLWDL 390
+ +WD+
Sbjct: 155 VILVWDV 161
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 267 PLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKSEIVGNKSFF----- 319
P + L+GH++ + W ++++S DHT+ +WD + ++ K+ F
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 320 ---DVHYSPLSKLVITASADKQ-IRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQL 375
DV + L + + + AD Q + ++D + + T +H V + ++P +
Sbjct: 235 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 376 FVSASFDNSVKLWDLR 391
+ S D +V LWDLR
Sbjct: 295 LATGSADKTVALWDLR 310
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 271 LKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGMKSEIVGNKSFFDVH------ 322
GH + V W + E + S D L IWD D H
Sbjct: 229 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP----SHTVDAHTAEVNC 284
Query: 323 --YSPLSKLVI-TASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
++P S+ ++ T SADK + L+D ++ + +F SHK+ + V+WSP + + S+
Sbjct: 285 LSFNPYSEFILATGSADKTVALWD--LRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 342
Query: 380 SFDNSVKLWDL 390
D + +WDL
Sbjct: 343 GTDRRLHVWDL 353
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 107/276 (38%), Gaps = 72/276 (26%)
Query: 126 NDWILTGCYDHSVHIWTRRG---EHKL----NI-PGHGGPVKGVAWLYNDGKDAAFISVS 177
N ++L+ DH++ +W EH++ NI GH V+ VAW ++ F SV+
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL--LHESLFGSVA 253
Query: 178 TDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSE-SRQQFATGGWDCLLKIWSADIS 236
DQ MIW+ + +N+ + H H + ++ + S ATG D + +W
Sbjct: 254 DDQKLMIWDTR-NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--- 309
Query: 237 KERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEII--TSSW 294
+ + L + + HK+ I VQW+ +E I +S
Sbjct: 310 -------------------------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 295 DHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKS 354
D L +WD S+I +S D P L I +I S
Sbjct: 345 DRRLHVWDL------SKIGEEQSTEDAEDGPPELLFIHGGHTAKI--------------S 384
Query: 355 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
FS W+P +P + S S DN +++W +
Sbjct: 385 DFS----------WNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 267 PLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKSEIVGNKSFF----- 319
P + L+GH++ + W ++++S DHT+ +WD + ++ K+ F
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 320 ---DVHYSPLSKLVITASADKQ-IRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQL 375
DV + L + + + AD Q + ++D + + T +H V + ++P +
Sbjct: 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 376 FVSASFDNSVKLWDLR 391
+ S D +V LWDLR
Sbjct: 293 LATGSADKTVALWDLR 308
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 271 LKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGMKSEIVGNKSFFDVH------ 322
GH + V W + E + S D L IWD D H
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP----SHTVDAHTAEVNC 282
Query: 323 --YSPLSKLVI-TASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
++P S+ ++ T SADK + L+D ++ + +F SHK+ + V+WSP + + S+
Sbjct: 283 LSFNPYSEFILATGSADKTVALWD--LRNLKLKLHSFESHKDEIFQVQWSPHNETILASS 340
Query: 380 SFDNSVKLWDL 390
D + +WDL
Sbjct: 341 GTDRRLHVWDL 351
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 107/276 (38%), Gaps = 72/276 (26%)
Query: 126 NDWILTGCYDHSVHIWTRRG---EHKL----NI-PGHGGPVKGVAWLYNDGKDAAFISVS 177
N ++L+ DH++ +W EH++ NI GH V+ VAW ++ F SV+
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL--LHESLFGSVA 251
Query: 178 TDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSE-SRQQFATGGWDCLLKIWSADIS 236
DQ MIW+ + +N+ + H H + ++ + S ATG D + +W
Sbjct: 252 DDQKLMIWDTR-NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--- 307
Query: 237 KERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEII--TSSW 294
+ + L + + HK+ I VQW+ +E I +S
Sbjct: 308 -------------------------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 295 DHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKS 354
D L +WD S+I +S D P L I +I S
Sbjct: 343 DRRLHVWDL------SKIGEEQSTEDAEDGPPELLFIHGGHTAKI--------------S 382
Query: 355 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
FS W+P +P + S S DN +++W +
Sbjct: 383 DFS----------WNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 109/273 (39%), Gaps = 49/273 (17%)
Query: 127 DWILTGCYDHSVHIWT-RRGEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIW 185
+WI+ G D + ++ GE ++ H ++ +A +S S D T +W
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV---HPTKPYVLSGSDDLTVKLW 124
Query: 186 EWKVESNSIECIHVCRGHERGLETVTVS-ESRQQFATGGWDCLLKIWSADISKERGDPSE 244
W+ N+ GHE + V + + FA+G D +K+WS S
Sbjct: 125 NWE---NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-------- 173
Query: 245 NGDEGTTSKKRKKEYSSASSRTPLITLK-GHKEAISAVQWTAVDE---IITSSWDHTLKI 300
TP TL G + ++ V + + + +IT+S D T+KI
Sbjct: 174 ---------------------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 301 WDAELGGMKSEIVG---NKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFS 357
WD + + + G N SF H P ++I+ S D +++++ + V+ T +
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYK---VEKTLN 267
Query: 358 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
E + P + ++++ FDN + L
Sbjct: 268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 109/273 (39%), Gaps = 49/273 (17%)
Query: 127 DWILTGCYDHSVHIWTRR-GEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIW 185
+WI+ G D + ++ GE ++ H ++ +A +S S D T +W
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA---VHPTKPYVLSGSDDLTVKLW 124
Query: 186 EWKVESNSIECIHVCRGHERGLETVTVS-ESRQQFATGGWDCLLKIWSADISKERGDPSE 244
W+ N+ GHE + V + + FA+G D +K+WS S
Sbjct: 125 NWE---NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-------- 173
Query: 245 NGDEGTTSKKRKKEYSSASSRTPLITLK-GHKEAISAVQWTAVDE---IITSSWDHTLKI 300
TP TL G + ++ V + + + +IT+S D T+KI
Sbjct: 174 ---------------------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 301 WDAELGGMKSEIVG---NKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFS 357
WD + + + G N SF H P ++I+ S D +++++ + V+ T +
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYK---VEKTLN 267
Query: 358 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
E + P + ++++ FDN + L
Sbjct: 268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 265 RTPLITLKGHKEAISAVQW--TAVDEIITSSWDHTLKIWDAELGGMKSEI---VGNKSFF 319
R P+ITL+GH + + V W TA + ++++ D+ + +WD G + V + +
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIY 180
Query: 320 DVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
V +S L+ T+ DK++R+ +P ++G +V H E + V + ++
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEP--RKGTVVAEKDRPH-EGTRPVHAVFVSEGKILTT 237
Query: 380 SF----DNSVKLWDLR 391
F + V LWD +
Sbjct: 238 GFSRMSERQVALWDTK 253
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 107/286 (37%), Gaps = 38/286 (13%)
Query: 115 HDDWVSAIDFHND--WILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H+D V F D +I T D V IW + GE H V N
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQV-NCCHFTNSSHHL 720
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
+ S+D +W+ N EC + GH + S + A+ D LK+W
Sbjct: 721 LLATGSSDCFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Query: 232 SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKE----AISAVQWTAVD 287
A + ER S + + + L+ +E + W+A
Sbjct: 777 DATSANER--------------------KSINVKQFFLNLEDPQEDMEVIVKCCSWSADG 816
Query: 288 EIITSSWDHTLKIWDAELGGMKSEI-VGNKSFFD-VHYSPLSKLVITASADKQIRLYDPK 345
I + + + ++D G+ EI G+ S +SP + L + A + + L++
Sbjct: 817 ARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTD 876
Query: 346 VKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
+ + H WV V +SP D F+++S D +++LW+ +
Sbjct: 877 SRSKV---ADCRGHLSWVHGVMFSP-DGSSFLTSSDDQTIRLWETK 918
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 126 NDWILTGCYDHSVHIWTR-RGEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMI 184
N +L+ +D +V +W G + + H G V ++ K F S S D+TA I
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATK---FSSTSADKTAKI 1117
Query: 185 WEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSA 233
W + + + +H RGH + S ATG + ++IW+
Sbjct: 1118 WSFDL----LLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 23/132 (17%)
Query: 269 ITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSPLS 327
I L+GH+E + + +++ S+D T+K+W+ G + + V ++ + S +
Sbjct: 1044 IFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDA 1103
Query: 328 KLVITASADKQIR---------LYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 378
+ SADK + L++ + G + S FS +D L +
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-------------VDSTLLAT 1150
Query: 379 ASFDNSVKLWDL 390
+ +++W++
Sbjct: 1151 GDDNGEIRIWNV 1162
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 109/273 (39%), Gaps = 49/273 (17%)
Query: 127 DWILTGCYDHSVHIWTRR-GEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIW 185
+WI+ G D + ++ GE ++ H ++ +A +S S D T +W
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA---VHPTKPYVLSGSDDLTVKLW 124
Query: 186 EWKVESNSIECIHVCRGHERGLETVTVS-ESRQQFATGGWDCLLKIWSADISKERGDPSE 244
W+ N+ GHE + V + + FA+G D +K+WS S
Sbjct: 125 NWE---NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-------- 173
Query: 245 NGDEGTTSKKRKKEYSSASSRTPLITLK-GHKEAISAVQWTAVDE---IITSSWDHTLKI 300
TP TL G + ++ V + + + +IT+S D T+KI
Sbjct: 174 ---------------------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 301 WDAELGGMKSEIVG---NKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFS 357
WD + + + G N SF H P ++I+ S D +++++ + V+ T +
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYK---VEKTLN 267
Query: 358 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
E + P + ++++ FDN + L
Sbjct: 268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 109/273 (39%), Gaps = 49/273 (17%)
Query: 127 DWILTGCYDHSVHIWTRR-GEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIW 185
+WI+ G D + ++ GE ++ H ++ +A +S S D T +W
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA---VHPTKPYVLSGSDDLTVKLW 124
Query: 186 EWKVESNSIECIHVCRGHERGLETVTVS-ESRQQFATGGWDCLLKIWSADISKERGDPSE 244
W+ N+ GHE + V + + FA+G D +K+WS S
Sbjct: 125 NWE---NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-------- 173
Query: 245 NGDEGTTSKKRKKEYSSASSRTPLITLK-GHKEAISAVQWTAVDE---IITSSWDHTLKI 300
TP TL G + ++ V + + + +IT+S D T+KI
Sbjct: 174 ---------------------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 301 WDAELGGMKSEIVG---NKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFS 357
WD + + + G N SF H P ++I+ S D +++++ + V+ T +
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIWNSSTYK---VEKTLN 267
Query: 358 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
E + P + ++++ FDN + L
Sbjct: 268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 261 SASSRTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFFD 320
+ S PL TL GH+ + ++ + +I+ SWD T K+W E + + N S +D
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVW-KEGSLVYNLQAHNASVWD 147
Query: 321 VHYSPLSK-LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
S+ +TASADK I+L+ + ++K+ H + V+ + + +D F+S
Sbjct: 148 AKVVSFSENKFLTASADKTIKLW----QNDKVIKTFSGIHNDVVRHL--AVVDDGHFISC 201
Query: 380 SFDNSVKLWD 389
S D +KL D
Sbjct: 202 SNDGLIKLVD 211
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 40/226 (17%)
Query: 116 DDWVSAIDFHNDWILTG-CYD---------------HSVHIWTRRGEHKL-NIPGHGGPV 158
D W+ + + L CYD + V ++ GE L + GH G V
Sbjct: 48 DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNV 107
Query: 159 KGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGL-ETVTVSESRQ 217
+++ +D IS S D+TA +W+ ++ + H + + VS S
Sbjct: 108 CSLSF-----QDGVVISGSWDKTAKVWK------EGSLVYNLQAHNASVWDAKVVSFSEN 156
Query: 218 QFATGGWDCLLKIWSADISKERGDPSENG--------DEG---TTSKKRKKEYSSASSRT 266
+F T D +K+W D + N D+G + S + +
Sbjct: 157 KFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGD 216
Query: 267 PLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKSEI 312
L T +GH+ + ++ +I++ D T++IW E G +K I
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVI 262
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 103/267 (38%), Gaps = 40/267 (14%)
Query: 127 DWILTGCYDHSVHIWTRRGEHKL-NIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIW 185
+++ G V +W + + +L N+ H V ++W ++I S ++ I
Sbjct: 171 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW-------NSYILSSGSRSGHIH 223
Query: 186 EWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSEN 245
V + + GH + + + + + A+GG D L+ +W PS
Sbjct: 224 HHDVRV-AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW----------PSAP 272
Query: 246 GDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITSSW----DHTLKIW 301
G+ G PL T H+ A+ AV W + ++ D ++IW
Sbjct: 273 GEGGWV---------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Query: 302 DAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKE 361
+ G S + + + +SP K +I+ Q +L K A V + H
Sbjct: 318 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKGHTS 376
Query: 362 WVQSVRWSPIDPQLFVSASFDNSVKLW 388
V S+ SP D SA+ D +++LW
Sbjct: 377 RVLSLTMSP-DGATVASAAADETLRLW 402
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 268 LITLKGHKEAISAVQWTAVDEII---TSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYS 324
L+ ++ E IS+V W + TSS + +++WD + + + + N +
Sbjct: 151 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--VQLWDVQ----QQKRLRNMTSHSARVG 204
Query: 325 PLS---KLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 381
LS ++ + S I +D +V E + +T S H + V +RW+P D + S
Sbjct: 205 SLSWNSYILSSGSRSGHIHHHDVRVAEHHV--ATLSGHSQEVCGLRWAP-DGRHLASGGN 261
Query: 382 DNSVKLW 388
DN V +W
Sbjct: 262 DNLVNVW 268
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 303 AELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVK-STFSSHKE 361
A L G E+ G + ++P + + + D + ++ EG V TF+ H+
Sbjct: 235 ATLSGHSQEVCG------LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 362 WVQSVRWSPIDPQLFVS--ASFDNSVKLWDL 390
V++V W P + + + D +++W++
Sbjct: 289 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 103/267 (38%), Gaps = 40/267 (14%)
Query: 127 DWILTGCYDHSVHIWTRRGEHKL-NIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIW 185
+++ G V +W + + +L N+ H V ++W ++I S ++ I
Sbjct: 160 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW-------NSYILSSGSRSGHIH 212
Query: 186 EWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSEN 245
V + + GH + + + + + A+GG D L+ +W PS
Sbjct: 213 HHDVRV-AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW----------PSAP 261
Query: 246 GDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEIITSSW----DHTLKIW 301
G+ G PL T H+ A+ AV W + ++ D ++IW
Sbjct: 262 GEGGWV---------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Query: 302 DAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKE 361
+ G S + + + +SP K +I+ Q +L K A V + H
Sbjct: 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKGHTS 365
Query: 362 WVQSVRWSPIDPQLFVSASFDNSVKLW 388
V S+ SP D SA+ D +++LW
Sbjct: 366 RVLSLTMSP-DGATVASAAADETLRLW 391
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 268 LITLKGHKEAISAVQWTAVDEII---TSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYS 324
L+ ++ E IS+V W + TSS + +++WD + + + + N +
Sbjct: 140 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--VQLWDVQ----QQKRLRNMTSHSARVG 193
Query: 325 PLS---KLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 381
LS ++ + S I +D +V E + +T S H + V +RW+P D + S
Sbjct: 194 SLSWNSYILSSGSRSGHIHHHDVRVAEHHV--ATLSGHSQEVCGLRWAP-DGRHLASGGN 250
Query: 382 DNSVKLW 388
DN V +W
Sbjct: 251 DNLVNVW 257
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 303 AELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVK-STFSSHKE 361
A L G E+ G + ++P + + + D + ++ EG V TF+ H+
Sbjct: 224 ATLSGHSQEVCG------LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277
Query: 362 WVQSVRWSPIDPQLFVS--ASFDNSVKLWDL 390
V++V W P + + + D +++W++
Sbjct: 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 110/284 (38%), Gaps = 68/284 (23%)
Query: 113 ILHDDWVSAIDFHNDWILTGCYDHSVHIWTRRGE-HKL--NIPGHGGPVKGVAWLYNDGK 169
++HD + +D++ + T D ++ I+ GE HKL + GH GPV V W +
Sbjct: 11 LIHD---AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF- 66
Query: 170 DAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLK 229
S S D +IW K E+ I V H + +V Q+A + LL
Sbjct: 67 GTILASCSYDGKVLIW--KEENGRWSQIAVHAVHSASVNSV-------QWAPHEYGPLLL 117
Query: 230 IWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWT--AVD 287
+ S+D + ENG TTS P+I + H +++ W ++
Sbjct: 118 VASSDGKVSVVEFKENG---TTS--------------PII-IDAHAIGVNSASWAPATIE 159
Query: 288 EIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKV- 346
E D E G K S+ +T AD ++++
Sbjct: 160 E-------------DGEHNGTKE----------------SRKFVTGGADNLVKIWKYNSD 190
Query: 347 KEGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDNSVKLW 388
+ +++ST H +WV+ V WSP + S S D + +W
Sbjct: 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 76/217 (35%), Gaps = 53/217 (24%)
Query: 129 ILTGC-YDHSVHIWTRRGEHKLNIPGHG---GPVKGVAWLYNDGKDAAFISVSTDQTAMI 184
IL C YD V IW I H V V W ++ ++ S + +++
Sbjct: 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 128
Query: 185 WEWKVESNSIECIHVCRGHERGLETVT--------------VSESRQQFATGGWDCLLKI 230
+ + N + H G+ + + ESR+ F TGG D L+KI
Sbjct: 129 ---EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI 184
Query: 231 WSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAV---- 286
W K S A + TL+GH + + V W+
Sbjct: 185 W-------------------------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219
Query: 287 DEIITSSWDHTLKIW--DAELGGMKSEIVGNKSFFDV 321
+ + S D T IW D E G K ++ + F DV
Sbjct: 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 256
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 129/338 (38%), Gaps = 50/338 (14%)
Query: 76 LLRTSVTSFLESKGISSENVIDVEYLESTPTPSPLDCILHDDWVSAIDF-HNDWILTGCY 134
LL + S S+++ +++ L + + P+ + D + +D+ HN+ I+ G
Sbjct: 27 LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL 86
Query: 135 DH-SVHIW-TRRGEHKLN----IPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEW- 187
D+ S+ ++ T + +N H VK V +N +D S + IW+
Sbjct: 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVK--FNAKQDNVLASGGNNGEIFIWDMN 144
Query: 188 KVESNSIECIHVCRGHERGLETVTVSESRQQ-----FATGGWDCLLKIWSADISKERGDP 242
K + + G +S + Q FA+ G IW
Sbjct: 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL--------- 195
Query: 243 SENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQW-----TAVDEIITSSWDHT 297
K KKE S +P G K+ +S V+W T V S D +
Sbjct: 196 -----------KAKKEVIHLSYTSPN---SGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241
Query: 298 LKIWDAELGGMKSEIVGN---KSFFDVHYSPLSK-LVITASADKQIRLYDPKVKEGAIVK 353
+ IWD + + K + + + L++++ D + L++P E A
Sbjct: 242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP---ESAEQL 298
Query: 354 STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
S F + W +++P P LF ASFDN +++ L+
Sbjct: 299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 31/191 (16%)
Query: 202 GHERGLETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSS 261
GH + + + + + A+GG D L+ +W PS G+ G
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVW----------PSAPGEGGWV---------- 187
Query: 262 ASSRTPLITLKGHKEAISAVQWTAVDEIITSSW----DHTLKIWDAELGGMKSEIVGNKS 317
PL T H+ A+ AV W + ++ D ++IW+ G S + +
Sbjct: 188 -----PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242
Query: 318 FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 377
+ +SP K +I+ Q +L K A V + H V S+ SP D
Sbjct: 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRVLSLTMSP-DGATVA 300
Query: 378 SASFDNSVKLW 388
SA+ D +++LW
Sbjct: 301 SAAADETLRLW 311
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 268 LITLKGHKEAISAVQWTAVDEII---TSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYS 324
L+ ++ E IS+V W + TSS + +++WD + + + + N +
Sbjct: 60 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAE--VQLWDVQ----QQKRLRNMTSHSARVG 113
Query: 325 PLS---KLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 381
LS ++ + S I +D +V E + +T S H + V +RW+P D + S
Sbjct: 114 SLSWNSYILSSGSRSGHIHHHDVRVAEHHV--ATLSGHSQEVCGLRWAP-DGRHLASGGN 170
Query: 382 DNSVKLW 388
DN V +W
Sbjct: 171 DNLVNVW 177
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 303 AELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVK-STFSSHKE 361
A L G E+ G + ++P + + + D + ++ EG V TF+ H+
Sbjct: 144 ATLSGHSQEVCG------LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 362 WVQSVRWSPIDPQLFVS--ASFDNSVKLWDL 390
V++V W P + + + D +++W++
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 110/284 (38%), Gaps = 68/284 (23%)
Query: 113 ILHDDWVSAIDFHNDWILTGCYDHSVHIWTRRGE-HKL--NIPGHGGPVKGVAWLYNDGK 169
++HD + +D++ + T D ++ I+ GE HKL + GH GPV V W +
Sbjct: 13 LIHD---AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-F 68
Query: 170 DAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLK 229
S S D +IW K E+ I V H + +V Q+A + LL
Sbjct: 69 GTILASCSYDGKVLIW--KEENGRWSQIAVHAVHSASVNSV-------QWAPHEYGPLLL 119
Query: 230 IWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWT--AVD 287
+ S+D + ENG TTS P+I + H +++ W ++
Sbjct: 120 VASSDGKVSVVEFKENG---TTS--------------PII-IDAHAIGVNSASWAPATIE 161
Query: 288 EIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKV- 346
E D E G K S+ +T AD ++++
Sbjct: 162 E-------------DGEHNGTKE----------------SRKFVTGGADNLVKIWKYNSD 192
Query: 347 KEGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDNSVKLW 388
+ +++ST H +WV+ V WSP + S S D + +W
Sbjct: 193 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 57/242 (23%)
Query: 129 ILTGC-YDHSVHIWTRRGEHKLNIPGHG---GPVKGVAWLYNDGKDAAFISVSTDQTAMI 184
IL C YD V IW I H V V W ++ ++ S + +++
Sbjct: 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 130
Query: 185 WEWKVESNSIECIHVCRGHERGLETVT--------------VSESRQQFATGGWDCLLKI 230
+ + N + H G+ + + ESR+ F TGG D L+KI
Sbjct: 131 ---EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI 186
Query: 231 WSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAV---- 286
W K S A + TL+GH + + V W+
Sbjct: 187 W-------------------------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221
Query: 287 DEIITSSWDHTLKIW--DAELGGMKSEIVGNKSFFDV----HYSPLSKLVITASADKQIR 340
+ + S D T IW D E G K ++ + F DV +S ++ + D ++
Sbjct: 222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 281
Query: 341 LY 342
L+
Sbjct: 282 LW 283
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 110/284 (38%), Gaps = 68/284 (23%)
Query: 113 ILHDDWVSAIDFHNDWILTGCYDHSVHIWTRRGE-HKL--NIPGHGGPVKGVAWLYNDGK 169
++HD + +D++ + T D ++ I+ GE HKL + GH GPV V W +
Sbjct: 11 LIHD---AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-F 66
Query: 170 DAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLK 229
S S D +IW K E+ I V H + +V Q+A + LL
Sbjct: 67 GTILASCSYDGKVLIW--KEENGRWSQIAVHAVHSASVNSV-------QWAPHEYGPLLL 117
Query: 230 IWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWT--AVD 287
+ S+D + ENG TTS P+I + H +++ W ++
Sbjct: 118 VASSDGKVSVVEFKENG---TTS--------------PII-IDAHAIGVNSASWAPATIE 159
Query: 288 EIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKV- 346
E D E G K S+ +T AD ++++
Sbjct: 160 E-------------DGEHNGTKE----------------SRKFVTGGADNLVKIWKYNSD 190
Query: 347 KEGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDNSVKLW 388
+ +++ST H +WV+ V WSP + S S D + +W
Sbjct: 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 86/242 (35%), Gaps = 57/242 (23%)
Query: 129 ILTGC-YDHSVHIWTRRGEHKLNIPGHG---GPVKGVAWLYNDGKDAAFISVSTDQTAMI 184
IL C YD V IW I H V V W ++ ++ S + +++
Sbjct: 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV 128
Query: 185 WEWKVESNSIECIHVCRGHERGLETVT--------------VSESRQQFATGGWDCLLKI 230
+ + N + H G+ + + ESR+ F TGG D L+KI
Sbjct: 129 ---EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI 184
Query: 231 WSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAV---- 286
W K S A + TL+GH + + V W+
Sbjct: 185 W-------------------------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219
Query: 287 DEIITSSWDHTLKIW--DAELGGMKSEIVGNKSFFDV----HYSPLSKLVITASADKQIR 340
+ + S D T IW D E G K ++ + F DV +S ++ + D ++
Sbjct: 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279
Query: 341 LY 342
L+
Sbjct: 280 LW 281
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 110/284 (38%), Gaps = 68/284 (23%)
Query: 113 ILHDDWVSAIDFHNDWILTGCYDHSVHIWTRRGE-HKL--NIPGHGGPVKGVAWLYNDGK 169
++HD + +D++ + T D ++ I+ GE HKL + GH GPV V W +
Sbjct: 11 MIHD---AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-F 66
Query: 170 DAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLK 229
S S D MIW K E+ I V H + +V Q+A + +L
Sbjct: 67 GTILASCSYDGKVMIW--KEENGRWSQIAVHAVHSASVNSV-------QWAPHEYGPMLL 117
Query: 230 IWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWT--AVD 287
+ S+D + ENG TTS P+I + H +++ W ++
Sbjct: 118 VASSDGKVSVVEFKENG---TTS--------------PII-IDAHAIGVNSASWAPATIE 159
Query: 288 EIITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKV- 346
E D E G K S+ +T AD ++++
Sbjct: 160 E-------------DGEHNGTKE----------------SRKFVTGGADNLVKIWKYNSD 190
Query: 347 KEGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDNSVKLW 388
+ +++ST H +WV+ V WSP + S S D + +W
Sbjct: 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 330 VITASADKQIRLYD-PKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
+I+ S D + +++ P K KSTF H ++V SVR++P D LF S D ++ L+
Sbjct: 163 IISGSDDNTVAIFEGPPFK----FKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLY 217
Query: 389 D 389
+
Sbjct: 218 N 218
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 40/193 (20%)
Query: 120 SAIDFHND--WILTGCYDHSVHIWTRRGEH--KLNIPGHGGPVKGVAWLYNDGKDAAFIS 175
S + ND ++ G D VH++ G ++ H + VA+ N AF+
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN----GAFL- 506
Query: 176 VSTDQTAMIWEWKVESNSIECIHVCR--GHERGLETVTVSESRQQFATGGWDCLLKIWSA 233
V+TDQ+ + + V +N+ E H H + V+ S + ATG D + +W+
Sbjct: 507 VATDQSRKVIPYSV-ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
Query: 234 DISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHK-EAISAVQWTAVDEIITS 292
+ PS++ P+I H ++++V W I+++
Sbjct: 566 N------KPSDH---------------------PIIIKGAHAMSSVNSVIWLNETTIVSA 598
Query: 293 SWDHTLKIWDAEL 305
D +K W+
Sbjct: 599 GQDSNIKFWNVPF 611
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 289 IITSSWDHTLKIWDAELGGM---KSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPK 345
+I SW + ++ W+ + G K++ + DV +S V TAS DK +++D
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
Query: 346 VKEGAIVKSTFSSHKEWVQSVRW-SPIDPQLFVSASFDNSVKLWDLR 391
+ + + H V+++ W + ++ S+D ++K WD R
Sbjct: 117 SNQAIQI----AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 79 TSVTSFLESKGISSENVIDVEYLESTPTPSPLDCILHDDWVSAIDFH-----NDWILTGC 133
TS TS S + N + + S+P DD + + F ++++ G
Sbjct: 12 TSGTSMFGSATTDNHNPMKDIEVTSSP----------DDSIGCLSFSPPTLPGNFLIAGS 61
Query: 134 YDHSVHIWTRRGEHKLNIPG----HGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKV 189
+ + V W + + IP H GPV V W +DG + + S D+TA +W+ +
Sbjct: 62 WANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCW-SDDG--SKVFTASCDKTAKMWD--L 115
Query: 190 ESNSIECIHVCRGHERGLETV--TVSESRQQFATGGWDCLLKIW 231
SN + I + + H+ ++T+ + + TG WD LK W
Sbjct: 116 SSN--QAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 269 ITLKGHKEAISAVQWTAVDE---IITSSWDHTLKIWDAE 304
I + H + + W ++T SWD TLK WD
Sbjct: 121 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 274 HKEAIS-----------AVQWTAVDEIITSSWDHTLKIWD-AELGGMKSEIV---GNK-S 317
HKEA+ AV + EI+T + LKIWD + G S+I+ G++
Sbjct: 179 HKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVP 238
Query: 318 FFDVHYSPLSKLVI-TASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLF 376
V P + V+ T D + ++D V++G + S +H+ + V + P +P+
Sbjct: 239 LHCVDRHPNQQHVVATGGQDGMLSIWD--VRQGTMPVSLLKAHEAEMWEVHFHPSNPEHL 296
Query: 377 VSASFDNSVKLWD 389
+ S D S+ WD
Sbjct: 297 FTCSEDGSLWHWD 309
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 331 ITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
++ S D I+++D + +V S++ +H V V SP +F+S S DN + LWD
Sbjct: 143 VSGSKDICIKVWDLAQQ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
Query: 391 R 391
R
Sbjct: 200 R 200
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 297 TLKIWD--AELGGMKSEIVGNK-SFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVK 353
TL IWD A +K+E+ + + + + SP SK+ + +D I ++D + +V+
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD--LHNQTLVR 177
Query: 354 STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
F H + + S +L+ + DN+V+ WDLR
Sbjct: 178 Q-FQGHTDGASCIDISNDGTKLW-TGGLDNTVRSWDLR 213
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 273 GHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKS-EIVGNKSFFDVHYSPLSKLVI 331
GH ++I + W D++I+ S D ++++W + + + IV F S +
Sbjct: 287 GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYA 346
Query: 332 TASADKQIRLYDPK 345
A D Q+ +YD K
Sbjct: 347 VAFMDGQVNVYDLK 360
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 21/138 (15%)
Query: 263 SSRTPLITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKSEIVGN-KSFFD 320
+ +TP L GH IS +++ ++++ S S D TL+IW G ++ G+ +S
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVS 294
Query: 321 VHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPI-------DP 373
+ K VI+ S D +RL+ +K+ ++ + V PI D
Sbjct: 295 ASWVGDDK-VISCSMDGSVRLW--SLKQNTLLALSI---------VDGVPIFAGRISQDG 342
Query: 374 QLFVSASFDNSVKLWDLR 391
Q + A D V ++DL+
Sbjct: 343 QKYAVAFMDGQVNVYDLK 360
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 238 ERGDPSENGDEGTTSKKRKKEYSS-----------ASSRTPLITLKGHKEAISAVQWTA- 285
E+ P + G G TS +++ + + P+ ++KGHKE I+A+
Sbjct: 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG 122
Query: 286 ------VDEIITSSWDHTLKIWD 302
EI+T S D T+K+WD
Sbjct: 123 LGIGEGAPEIVTGSRDGTVKVWD 145
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
L+ A + IR+ +P + + H + +++ P DP L +S S D++++LW
Sbjct: 82 LLAVAGSRGIIRIINPITMQCI---KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 138
Query: 389 DLR 391
+++
Sbjct: 139 NIQ 141
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 271 LKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKL 329
++GH++ + + + + E I++ DH+LK+W M + I K +D + + ++
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI---KESYDYNPNKTNRP 208
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
I+ +++ P ST H+ +V VRW L +S S +N++ W
Sbjct: 209 FISQ------KIHFPDF-------STRDIHRNYVDCVRWL---GDLILSKSCENAIVCW 251
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
L+ A + IR+ +P + + H + +++ P DP L +S S D++++LW
Sbjct: 123 LLAVAGSRGIIRIINPITMQCI---KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 179
Query: 389 DLR 391
+++
Sbjct: 180 NIQ 182
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 271 LKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKL 329
++GH++ + + + + E I++ DH+LK+W M + I K +D + + ++
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI---KESYDYNPNKTNRP 249
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
I+ +++ P ST H+ +V VRW L +S S +N++ W
Sbjct: 250 FISQ------KIHFPDF-------STRDIHRNYVDCVRWL---GDLILSKSCENAIVCW 292
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
L+ A + IR+ +P + + H + +++ P DP L +S S D++++LW
Sbjct: 86 LLAVAGSRGIIRIINPITMQCI---KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 389 DLR 391
+++
Sbjct: 143 NIQ 145
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 271 LKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKL 329
++GH++ + + + + E I++ DH+LK+W M + I K +D + + ++
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI---KESYDYNPNKTNRP 212
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
I+ +++ P ST H+ +V VRW L +S S +N++ W
Sbjct: 213 FISQ------KIHFPDF-------STRDIHRNYVDCVRWL---GDLILSKSCENAIVCW 255
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
L+ A + IR+ +P + + H + +++ P DP L +S S D++++LW
Sbjct: 86 LLAVAGSRGIIRIINPITMQCI---KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 389 DLR 391
+++
Sbjct: 143 NIQ 145
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 271 LKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKL 329
++GH++ + + + + E I++ DH+LK+W M + I K +D + + ++
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI---KESYDYNPNKTNRP 212
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
I+ +++ P ST H+ +V VRW L +S S +N++ W
Sbjct: 213 FISQ------KIHFPDF-------STRDIHRNYVDCVRWL---GDLILSKSCENAIVCW 255
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 320 DVHYSPLSKLVITASADKQIRLYD-PKVKEGAIVKSTFSSHKEWVQSVRW-SPIDPQLFV 377
DV Y + V T S+D+ I+++ K + ++ +H + ++ W SP ++
Sbjct: 14 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA 73
Query: 378 SASFDNSVKLWD 389
SAS+D +VKLW+
Sbjct: 74 SASYDKTVKLWE 85
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
L+ A + IR+ +P + + H + +++ P DP L +S S D++++LW
Sbjct: 87 LLAVAGSRGIIRIINPITMQCI---KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143
Query: 389 DLR 391
+++
Sbjct: 144 NIQ 146
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 271 LKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKL 329
++GH++ + + + + E I++ DH+LK+W M + I K +D + + ++
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI---KESYDYNPNKTNRP 213
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
I+ +++ P ST H+ +V VRW L +S S +N++ W
Sbjct: 214 FISQ------KIHFPDF-------STRDIHRNYVDCVRWL---GDLILSKSCENAIVCW 256
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 320 DVHYSPLSKLVITASADKQIRLYD-PKVKEGAIVKSTFSSHKEWVQSVRW-SPIDPQLFV 377
DV Y + V T S+D+ I+++ K + ++ +H + ++ W SP ++
Sbjct: 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA 75
Query: 378 SASFDNSVKLWD 389
SAS+D +VKLW+
Sbjct: 76 SASYDKTVKLWE 87
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 320 DVHYSPLSKLVITASADKQIRLYD-PKVKEGAIVKSTFSSHKEWVQSVRW-SPIDPQLFV 377
DV Y + V T S+D+ I+++ K + ++ +H + ++ W SP ++
Sbjct: 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA 75
Query: 378 SASFDNSVKLWD 389
SAS+D +VKLW+
Sbjct: 76 SASYDKTVKLWE 87
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 44 PGLNSLINEIL-KEDSNEDNYKDIQFDFLIAGEL--LRTSVTSFLESKGISSENVID 97
P LN++ N K NEDNY +I+F F+ + +R+S+ LE G +V D
Sbjct: 241 PKLNAMANRAAGKGYENEDNYSNIRFQFVGIENIHVMRSSLQKLLEVNGTKGLSVND 297
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 272 KGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSPLSKL 329
+ H I+ +++ E +I+SS D LKIW + G ++G++ + D+ +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 330 VITASADKQIRLYD 343
V++AS D IRL++
Sbjct: 193 VLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 272 KGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDVHYSPLSKL 329
+ H I+ +++ E +I+SS D LKIW + G ++G++ + D+ +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 330 VITASADKQIRLYD 343
V++AS D IRL++
Sbjct: 196 VLSASLDGTIRLWE 209
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 113 ILHDDWVSAIDFHNDWILTGCYDHSVHIWTRRGEHKL---NIPGHGGPVKGVAW---LYN 166
++HD + +D++ + T D SV I+ R ++ ++ GH GPV VAW +Y
Sbjct: 15 MIHD---AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 167 DGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVT 211
+ S S D+ +I W+ E+ + E H GH+ + +V
Sbjct: 72 N----ILASCSYDRKVII--WREENGTWEKSHEHAGHDSSVNSVC 110
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 264 SRTPLITLKGHKEAISAVQWTAVDEIITSS------WDHTLKIWDAELG---GMKSEIVG 314
S+T L T+ GH+ + + W +++S H ++I + ++G G SE+ G
Sbjct: 165 SQTKLRTMAGHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222
Query: 315 NKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQ 374
+ + + + D ++++D + +I K T ++H V++V W P
Sbjct: 223 ------LAWRSDGLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 375 LFVS--ASFDNSVKLWD 389
L + + D + W+
Sbjct: 274 LLATGGGTMDKQIHFWN 290
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 327 SKLVITASADKQIRLYDPKV-KEGAIVKSTFSSHKEWVQSVRWSP--IDPQLFVSASFDN 383
S+ +T AD ++++ + +++ST H +WV+ V WSP + S S D
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDR 229
Query: 384 SVKLW 388
+ +W
Sbjct: 230 TCIIW 234
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 57/242 (23%)
Query: 129 ILTGC-YDHSVHIWTRRGEHKLNIPGHG---GPVKGVAWLYNDGKDAAFISVSTDQTAMI 184
IL C YD V IW I H V V W ++ ++ S + +++
Sbjct: 69 ILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVV 128
Query: 185 WEWKVESNSIECIHVCRGHERGLETVT--------------VSESRQQFATGGWDCLLKI 230
+ + N + H G+ + + ESR+ F TGG D L+KI
Sbjct: 129 ---EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKI 184
Query: 231 WSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAV---- 286
W K S A + TL+GH + + V W+
Sbjct: 185 W-------------------------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219
Query: 287 DEIITSSWDHTLKIW--DAELGGMKSEIVGNKSFFDV----HYSPLSKLVITASADKQIR 340
+ S D T IW D E G K ++ + F DV +S ++ + D ++
Sbjct: 220 SYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 279
Query: 341 LY 342
L+
Sbjct: 280 LW 281
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 318 FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 377
F + S S++V+T + L + KE HK+ V V +P
Sbjct: 213 FCSLDVSASSRMVVTGDNVGNVILLNMDGKE----LWNLRMHKKKVTHVALNPCCDWFLA 268
Query: 378 SASFDNSVKLWDLR 391
+AS D +VK+WDLR
Sbjct: 269 TASVDQTVKIWDLR 282
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 318 FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 377
F + S S++V+T + L + KE HK+ V V +P
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKE----LWNLRMHKKKVTHVALNPCCDWFLA 267
Query: 378 SASFDNSVKLWDLR 391
+AS D +VK+WDLR
Sbjct: 268 TASVDQTVKIWDLR 281
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 318 FFDVHYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 377
F + S S++V+T + L + KE HK+ V V +P
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKE----LWNLRMHKKKVTHVALNPCCDWFLA 267
Query: 378 SASFDNSVKLWDLR 391
+AS D +VK+WDLR
Sbjct: 268 TASVDQTVKIWDLR 281
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 330 VITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 389
++ D ++++D + + A++KS +++H V V P +F+S D + LWD
Sbjct: 154 AVSGGKDFSVKVWD--LSQKAVLKS-YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Query: 390 LR 391
R
Sbjct: 211 TR 212
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 358 SHKEWVQSVRWSPIDPQLFVSASFDNSV 385
SH+++V V WSP+D F + +D+ V
Sbjct: 309 SHRDFVTGVAWSPLDHSKFTTVGWDHKV 336
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 21/202 (10%)
Query: 115 HDDWVSAIDFHNDWI--LTGCYDHSVHIWTRRGEHKL-NIPGHGGPVKGVAWLYNDGKDA 171
HDD V + +D ++G D SV +W + L + H V VA GKD
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC--PGKDT 195
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATG---GWDCLL 228
F+S D ++W+ + + I C E FA G G L+
Sbjct: 196 IFLSCGEDGRILLWDTRKPKPATR-IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254
Query: 229 KIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKG----------HKEAI 278
I + D ++ S+N S +S S + L H++ +
Sbjct: 255 NIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFV 314
Query: 279 SAVQWTAVD--EIITSSWDHTL 298
+ V W+ +D + T WDH +
Sbjct: 315 TGVAWSPLDHSKFTTVGWDHKV 336
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 168 GKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHER 205
GKD F+S+S D+ WE V + ++ I + G +R
Sbjct: 61 GKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDR 98
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 264 SRTPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKSEIVGNK-SFFDV 321
S I L GH+ ++ V++ D + + S D + +W + G + G+ + + +
Sbjct: 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
Query: 322 HYSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 381
+K +T SAD I+L+D V G V +T+ S V+ V +SP A
Sbjct: 81 DVDCFTKYCVTGSADYSIKLWD--VSNGQCV-ATWKSPVP-VKRVEFSPCGNYFL--AIL 134
Query: 382 DNSVK 386
DN +K
Sbjct: 135 DNVMK 139
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 359 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
HK V ++P L ++S D +VKLWDLR
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 359 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
HK V ++P L ++S D +VKLWDLR
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 234
>pdb|3NKH|A Chain A, Crystal Structure Of Integrase From Mrsa Strain
Staphylococcus Aureus
pdb|3NKH|B Chain B, Crystal Structure Of Integrase From Mrsa Strain
Staphylococcus Aureus
Length = 244
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 35 FAVQGNLGVPGLNSLINEILKEDSNEDNYKDIQFDFLIAGELLRTSVTSFLESKGISSEN 94
F + G P N+IL+E + KD+ D ++ +LR S S L +G+S +
Sbjct: 152 FVFTNHKGNPXQTERFNKILREAA-----KDVGIDKEVSSHILRHSHISLLSQQGVSLKA 206
Query: 95 VID 97
+ D
Sbjct: 207 IXD 209
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 101 LESTPTPSPLDCILHDDWVSAIDFHNDWILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKG 160
+E++ P + + H +S D +D+ G YD R + K +P +G + G
Sbjct: 214 VETSSFGEPNEILKHVLKISLADTKHDYYTIGTYD--------RVKDKF-VPDNGFKMDG 264
Query: 161 VAWLYNDGKDAAFISV--STDQTAMIWEWKVESNSIE 195
A Y+ GK A + S ++W W ES+S+E
Sbjct: 265 TAPRYDYGKYYASKTFFDSAKNRRILWGWTNESSSVE 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,614,855
Number of Sequences: 62578
Number of extensions: 529218
Number of successful extensions: 1681
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 404
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)