RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2107
(391 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 144 bits (364), Expect = 3e-40
Identities = 71/282 (25%), Positives = 124/282 (43%), Gaps = 45/282 (15%)
Query: 115 HDDWVSAIDFHND--WILTGCYDHSVHIW-TRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H V+ + F D + TG D ++ +W GE + GH GPV+ VA +
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY-- 65
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
S S+D+T +W+ + EC+ GH + +V S + ++ D +K+W
Sbjct: 66 -LASGSSDKTIRLWDL----ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 232 SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEIIT 291
+ + L TL+GH + +++V ++ +
Sbjct: 121 DVE-----------------------------TGKCLTTLRGHTDWVNSVAFSPDGTFVA 151
Query: 292 -SSWDHTLKIWDAELGGMKSEIVGNKSF-FDVHYSPLSKLVITASADKQIRLYDPKVKEG 349
SS D T+K+WD G + + G+ V +SP + ++++S+D I+L+D G
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS--TG 209
Query: 350 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
+ T H+ V SV +SP D L S S D ++++WDLR
Sbjct: 210 KCLG-TLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLR 249
Score = 127 bits (321), Expect = 5e-34
Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 45/280 (16%)
Query: 115 HDDWVSAIDFHND--WILTGCYDHSVHIWTRRGEHKLN-IPGHGGPVKGVAWLYNDGKDA 171
H V + D ++ +G D ++ +W + + GH V VA+ DG+
Sbjct: 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGR-- 106
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
S S D+T +W+ + +C+ RGH + +V S A+ D +K+W
Sbjct: 107 ILSSSSRDKTIKVWDV----ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
Query: 232 SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAV-DEII 290
K + TL GH +++V ++ ++++
Sbjct: 163 DLRTGK-----------------------------CVATLTGHTGEVNSVAFSPDGEKLL 193
Query: 291 TSSWDHTLKIWDAELGGMKSEIVG-NKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEG 349
+SS D T+K+WD G + G V +SP L+ + S D IR++D ++ G
Sbjct: 194 SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD--LRTG 251
Query: 350 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 389
V+ T S H V S+ WSP D + S S D ++++WD
Sbjct: 252 ECVQ-TLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289
Score = 123 bits (310), Expect = 2e-32
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 42/243 (17%)
Query: 151 IPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETV 210
+ GH G V VA+ + + S D T +W+ + E + +GH + V
Sbjct: 5 LKGHTGGVTCVAFSPDGKL---LATGSGDGTIKVWDLETG----ELLRTLKGHTGPVRDV 57
Query: 211 TVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLIT 270
S A+G D +++W D+ + T
Sbjct: 58 AASADGTYLASGSSDKTIRLW--DLETGE---------------------------CVRT 88
Query: 271 LKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGMKSEIVGNKSF-FDVHYSPLSK 328
L GH +S+V ++ I+ +SS D T+K+WD E G + + G+ + V +SP
Sbjct: 89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148
Query: 329 LVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 388
V ++S D I+L+D ++ G V T + H V SV +SP D + +S+S D ++KLW
Sbjct: 149 FVASSSQDGTIKLWD--LRTGKCVA-TLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLW 204
Query: 389 DLR 391
DL
Sbjct: 205 DLS 207
Score = 93.6 bits (233), Expect = 1e-21
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 270 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKSEIVGNKSF-FDVHYSPLS 327
TLKGH ++ V ++ + + T S D T+K+WD E G + + G+ DV S
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 328 KLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 387
+ + S+DK IRL+D + E T + H +V SV +SP D ++ S+S D ++K+
Sbjct: 64 TYLASGSSDKTIRLWDLETGE---CVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKV 119
Query: 388 WDLR 391
WD+
Sbjct: 120 WDVE 123
Score = 40.4 bits (95), Expect = 0.001
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 353 KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 390
+ T H V V +SP D +L + S D ++K+WDL
Sbjct: 2 RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDL 38
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 95.5 bits (236), Expect = 2e-21
Identities = 83/321 (25%), Positives = 132/321 (41%), Gaps = 44/321 (13%)
Query: 80 SVTSFLESKGISSENVIDVEYLESTPTPSPLDCILHDDWVSAIDFHND--WILTGCYDHS 137
S+ S S+ + + L S P S L H+D +++I F D +L+G D +
Sbjct: 29 SLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGT 88
Query: 138 VHIWTRRGEHKLNI---PGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSI 194
+ +W KL H V +A DG S S D T +W+ S
Sbjct: 89 IKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL---STPG 145
Query: 195 ECIHVCRGHERGLETVTVSESRQQFATGG-WDCLLKIWSADISKERGDPSENGDEGTTSK 253
+ I GH + ++ S + A+G D +K+W K
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---------------- 189
Query: 254 KRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKSE 311
PL TL GH + +S++ ++ I + S D T+++WD G +
Sbjct: 190 -------------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 312 IVGNKSFFDVH-YSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSP 370
+ S V +SP L+ + S+D IRL+D ++ + + T S H V SV +SP
Sbjct: 237 TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWD--LRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 371 IDPQLFVSASFDNSVKLWDLR 391
D +L S S D +V+LWDL
Sbjct: 295 -DGKLLASGSSDGTVRLWDLE 314
Score = 89.4 bits (220), Expect = 2e-19
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 41/282 (14%)
Query: 115 HDDWVSAIDFHND---WILTGCYDHSVHIWTRRGEHKLNIPGHGGPVKGVAWLYNDGKDA 171
H D VS++ F D I +G D ++ +W L G V+ DG
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL- 255
Query: 172 AFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIW 231
S S+D T +W+ + S+ + GH + +V S + A+G D +++W
Sbjct: 256 -LASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311
Query: 232 SADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVDEIIT 291
+ K +TLKGH+ +S++ ++ ++
Sbjct: 312 DLETGKLL---------------------------SSLTLKGHEGPVSSLSFSPDGSLLV 344
Query: 292 S--SWDHTLKIWDAELGGMKSEIVGNKSFFDVHYSPLSKLVITASADKQIRLYDPKVKEG 349
S S D T+++WD G + G+ + V +SP ++V + S D +RL+D
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS- 403
Query: 350 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
+ H V S+ +SP D + S S DN+++LWDL+
Sbjct: 404 --LLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLK 442
Score = 54.7 bits (130), Expect = 4e-08
Identities = 34/169 (20%), Positives = 69/169 (40%), Gaps = 5/169 (2%)
Query: 228 LKIWSADISKERGDPSENGDEGTTSKKRKKEYSSASSRTPLITLKGHKEAISAVQWTAVD 287
++ + + G + + + L+GH+++I+++ ++
Sbjct: 18 KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDG 77
Query: 288 EII-TSSWDHTLKIWDAELGGMKSEIVGNKSFFDVHY----SPLSKLVITASADKQIRLY 342
E++ + S D T+K+WD + G + + V SP ++ AS+ +
Sbjct: 78 ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137
Query: 343 DPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 391
+ + T H E V S+ +SP L +S D ++KLWDLR
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Score = 50.1 bits (118), Expect = 1e-06
Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 10/165 (6%)
Query: 91 SSENVIDVEYLESTPTPSPLDCILHDDWVSAIDFHNDW---ILTGCYDHSVHIWTRRGEH 147
SS+ + + LE+ S L H+ VS++ F D + G D ++ +W R
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362
Query: 148 KLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWEWKVESNSIECIHVCRGHERGL 207
L V V++ + S STD T +W+ ++ + GH +
Sbjct: 363 PLKTLEGHSNVLSVSFSPDGRV---VSSGSTDGTVRLWDL----STGSLLRNLDGHTSRV 415
Query: 208 ETVTVSESRQQFATGGWDCLLKIWSADISKERGDPSENGDEGTTS 252
++ S + A+G D +++W S + S +G +
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASK 460
>gnl|CDD|219730 pfam08154, NLE, NLE (NUC135) domain. This domain is located N
terminal to WD40 repeats. It is found in the
microtubule-associated yeast protein YTM1.
Length = 64
Score = 70.6 bits (174), Expect = 1e-15
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 16 EVQLKFFTKQEKYAVPDLVFAVQGNLGVPGLNSLINEILKEDSNEDNYKDIQFDFLIAGE 75
+VQ++F T++ Y VP F V NL GL+ L+N++L+ + + + FDFLI GE
Sbjct: 1 QVQVQFVTEEGDYEVPGTPFLVPTNLTRDGLSELLNQLLENE------EPVPFDFLINGE 54
Query: 76 LLRTSVTSFL 85
LRTS+ +L
Sbjct: 55 ELRTSLDEYL 64
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 43.8 bits (104), Expect = 2e-06
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 352 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 389
+ T H V SV +SP D + S S D ++KLWD
Sbjct: 4 LLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
Score = 39.6 bits (93), Expect = 7e-05
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 264 SRTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 302
S L TLKGH +++V ++ + + + S D T+K+WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 38.4 bits (90), Expect = 2e-04
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 193 SIECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
S E + +GH + +V S + A+G D +K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 35.8 bits (83), Expect = 0.001
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 115 HDDWVSAIDFHND--WILTGCYDHSVHIW 141
H V+++ F D ++ +G D ++ +W
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 30.0 bits (68), Expect = 0.15
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 315 NKSFFDVHYSPLSKLVITASADKQIRLYD 343
V +SP K + + S D I+L+D
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 28.8 bits (65), Expect = 0.43
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 145 GEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIWE 186
GE + GH GPV VA+ + S S D T +W+
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKY---LASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 43.5 bits (103), Expect = 2e-06
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 355 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 389
T H V SV +SP D L S S D +V++WD
Sbjct: 6 TLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
Score = 38.9 bits (91), Expect = 1e-04
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 265 RTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 302
L TLKGH +++V ++ + + S D T+++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 38.1 bits (89), Expect = 2e-04
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 195 ECIHVCRGHERGLETVTVSESRQQFATGGWDCLLKIWS 232
+ + +GH + +V S A+G D +++W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 35.8 bits (83), Expect = 0.001
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 115 HDDWVSAIDFHND--WILTGCYDHSVHIW 141
H V+++ F D + +G D +V +W
Sbjct: 10 HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 29.6 bits (67), Expect = 0.24
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 320 DVHYSPLSKLVITASADKQIRLYD 343
V +SP L+ + S D +R++D
Sbjct: 16 SVAFSPDGNLLASGSDDGTVRVWD 39
Score = 28.9 bits (65), Expect = 0.38
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 145 GEHKLNIPGHGGPVKGVAWLYNDGKDAAFISVSTDQTAMIW 185
G+ + GH GPV VA+ + S S D T +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNL---LASGSDDGTVRVW 38
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 46.1 bits (109), Expect = 2e-05
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 19/140 (13%)
Query: 265 RTPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKSEIVGNKSFFDVH 322
+ P LKGHK+ IS + W ++ I +S +D + IWD E +I K +
Sbjct: 115 KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLK 174
Query: 323 YSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKE-------WVQSVRWSPIDPQL 375
++ L+ K + + DP+ +E + S+F H W+ + D
Sbjct: 175 WNIKGNLLSGTCVGKHMHIIDPRKQE---IASSFHIHDGGKNTKNIWIDGLGG---DDNY 228
Query: 376 FVSASFDNS----VKLWDLR 391
+S F + +KLWDL+
Sbjct: 229 ILSTGFSKNNMREMKLWDLK 248
Score = 42.2 bits (99), Expect = 4e-04
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 317 SFFDVHYSP-LSKLVITASADKQIRLY-----DPKVKEGAIVKSTFSSHKEWVQSVRWSP 370
S D+ ++P S+++ + S D IR++ D VKE + HK+ + + W+P
Sbjct: 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135
Query: 371 IDPQLFVSASFDNSVKLWDL 390
++ + S+ FD+ V +WD+
Sbjct: 136 MNYYIMCSSGFDSFVNIWDI 155
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 43.2 bits (101), Expect = 2e-04
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 264 SRTPLIT-LKGHKEAISAVQWTAVDEIITSSW--DHTLKIWDAELGGMKSEIVGNKSFFD 320
+R+ L+T +K H++ + ++ +++ D + +S D ++K+W G I +
Sbjct: 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICC 622
Query: 321 VHY-SPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 379
V + S + + SAD ++ YD ++ + T H + V VR+ +D VS+
Sbjct: 623 VQFPSESGRSLAFGSADHKVYYYD--LRNPKLPLCTMIGHSKTVSYVRF--VDSSTLVSS 678
Query: 380 SFDNSVKLWDL 390
S DN++KLWDL
Sbjct: 679 STDNTLKLWDL 689
Score = 38.5 bits (89), Expect = 0.006
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 177 STDQTAMIWEWKVESNSIECIHVCRGHERGLETVTVSESRQQF-ATGGWDCLLKIWSADI 235
S++ ++ W V + + + + HE+ + ++ S + A+G D +K+WS +
Sbjct: 550 SSNFEGVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607
Query: 236 SKERGD------------PSENGDEGTTSKKRKK--EYSSASSRTPLITLKGHKEAISAV 281
G PSE+G K Y + + PL T+ GH + +S V
Sbjct: 608 GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV 667
Query: 282 QWTAVDEIITSSWDHTLKIWDAEL 305
++ +++SS D+TLK+WD +
Sbjct: 668 RFVDSSTLVSSSTDNTLKLWDLSM 691
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 38.3 bits (89), Expect = 0.006
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 267 PLITLKGHKEAISAVQW--TAVDEIITSSWDHTLKIWDAELGGMKSEIVGNKSFF--DVH 322
P++ L+GH + + V + +A++ + ++ D + +WD E G E++ S +
Sbjct: 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV-EVIKCHSDQITSLE 175
Query: 323 YSPLSKLVITASADKQIRLYDPKVKEGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 382
++ L+ T S DK++ + DP ++G IV S + Q W+ L ++
Sbjct: 176 WNLDGSLLCTTSKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCS 232
Query: 383 NS----VKLWDLR 391
S + LWD R
Sbjct: 233 KSQQRQIMLWDTR 245
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 30.7 bits (70), Expect = 1.00
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 32/113 (28%)
Query: 32 DLVFAV----QGNLGVPGLNSLINEILKEDSNEDNYKDIQFDFLIAGELLRTSVTSFLE- 86
D VFA +G + + L NE+ E + D +I L S + L+
Sbjct: 90 DRVFAEANLKEGGIMKTEYD-LYNELFDNLIPEL----LPPDLVI---YLDASPETCLKR 141
Query: 87 --SKGISSENVIDVEYLESTPTPSPLDCILHDDWVSAIDFHNDWILTGCYDHS 137
+G E I ++YLE LH+ + W L Y+ +
Sbjct: 142 IKKRGRPEEQGIPLDYLED----------LHEA-------YEKWFLPQMYEKA 177
>gnl|CDD|225965 COG3431, COG3431, Predicted membrane protein [Function unknown].
Length = 142
Score = 28.0 bits (63), Expect = 4.5
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 68 FDFLIAGELLRTSVTSFLESKGISSENVIDV 98
LI EL + +LE IS V++
Sbjct: 62 LFVLILLELFEL-LIDYLEEHRISLRLVVEA 91
>gnl|CDD|218936 pfam06201, PITH, PITH domain. This family was formerly known as
DUF1000. The full-length, Txnl1, protein which is a
probable component of the 26S proteasome, uses its
C-terminal, PITH, domain to associate specifically with
the 26S proteasome. PITH derives from
proteasome-interacting thioredoxin domain.
Length = 151
Score = 27.9 bits (63), Expect = 5.5
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 348 EGAIVKSTFSSHKEWVQSVRW--SPIDPQLFVSASFDNSVKL 387
EG+ KS F E + + S D QL ++ F VKL
Sbjct: 19 EGSGAKSLFKPWDERLDPEPYLESDADEQLLINIPFTQPVKL 60
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl
transferase [Posttranslational modification, protein
turnover, chaperones].
Length = 699
Score = 29.0 bits (65), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 300 IWD-AELGGMKSEIVGNKSFFDVHYSPLSKLVI 331
++D A G S + FFDVH PL K++I
Sbjct: 49 VFDEAHFGKFASYYLNGTPFFDVHP-PLGKMLI 80
>gnl|CDD|235922 PRK07058, PRK07058, acetate kinase; Provisional.
Length = 396
Score = 28.5 bits (64), Expect = 6.9
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 24 KQEKYAVPDLVFAVQGNLGVPGLNSLINEILKEDSNEDNYKDIQFDFLIAGELLRTSVT 82
V DL++ G LGV G++ ++L D+ E F IAGE+ R + T
Sbjct: 257 GMSLDEVEDLLYHRSGLLGVSGISGDTRDLLASDAPEAREALDLFALRIAGEIARLAAT 315
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.401
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,409,639
Number of extensions: 1797056
Number of successful extensions: 1092
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1002
Number of HSP's successfully gapped: 42
Length of query: 391
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 292
Effective length of database: 6,546,556
Effective search space: 1911594352
Effective search space used: 1911594352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.9 bits)