BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2108
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 78 YVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRI 137
Y + N+ VG VA +++ LS + ++H+IG SLGAH A K L + RI
Sbjct: 116 YSQASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGL-VGRI 174
Query: 138 TGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTS------AFVQGQYSRSGHVDFYMNGGI 191
TGLDPA P F + RLD DAKFVDVIHT + G + GH+DF+ NGG
Sbjct: 175 TGLDPAEPYFQDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGK 234
Query: 192 EQPGCWNASNPFDCNHRRAPQYFAESINSKEGFWGFPCA 230
+ PGC CNH R+ +Y+ SI + EGF G+PCA
Sbjct: 235 DMPGCKTG---ISCNHHRSIEYYHSSILNPEGFLGYPCA 270
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 97/185 (52%), Gaps = 23/185 (12%)
Query: 67 VNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTS 126
V+W R Y + YN VG +A +++ LS +G ++HLIG SLGAHV
Sbjct: 106 VDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAG 164
Query: 127 KYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA------FVQGQYSRS 180
+ L + + RITGLDPA P F + RLD DA FVDVIHT + G +
Sbjct: 165 RRLEGH-VGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKV 223
Query: 181 GHVDFYMNGGIEQPGC--------------WNASNPF-DCNHRRAPQYFAESINSKEGFW 225
GH+DF+ NGG E PGC W + F CNH R+ +Y+A SI + +GF
Sbjct: 224 GHLDFFPNGGKEMPGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKYYASSILNPDGFL 283
Query: 226 GFPCA 230
G+PC+
Sbjct: 284 GYPCS 288
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 100/205 (48%), Gaps = 24/205 (11%)
Query: 57 FKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFS 116
FK + N V+W + + Y + N+ VG VAQM+ LS + LIG S
Sbjct: 96 FKVEEVNCICVDWKKGSQ-TSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHS 154
Query: 117 LGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA----- 171
LGAHVA R L RITGLDP F + RLD DA FVDVIHT A
Sbjct: 155 LGAHVAGEAGS--RTPGLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIP 212
Query: 172 FVQ-GQYSRSGHVDFYMNGGIEQPGC--------------WNASNPF-DCNHRRAPQYFA 215
F+ G + GH+DF+ NGG E PGC W + F CNH R+ +Y++
Sbjct: 213 FLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYYS 272
Query: 216 ESINSKEGFWGFPCAGIISYLFGMC 240
ESI + +GF +PCA ++ C
Sbjct: 273 ESILNPDGFASYPCASYRAFESNKC 297
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 94/195 (48%), Gaps = 23/195 (11%)
Query: 57 FKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFS 116
FK N V+W R Y + N+ VG VA ++ L G ++H+IG S
Sbjct: 95 FKVESVNCICVDWKGGSR-TGYTQASQNIRIVGAEVAYFVEFLQSAFGYSPSNVHVIGHS 153
Query: 117 LGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA----- 171
LGAH A + + RITGLDPA P F RLD DAKFVDVIHT
Sbjct: 154 LGAHAAGEAGRRTNG-TIGRITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDGAPIVP 212
Query: 172 -FVQGQYSRSGHVDFYMNGGIEQPGC--------------WNASNPF-DCNHRRAPQYFA 215
G GH+DF+ NGG+E PGC W + F CNH R+ +Y+
Sbjct: 213 NLGFGMSQVVGHLDFFPNGGVEMPGCKKNILSQIVDIDGIWEGTRDFAACNHLRSYKYYT 272
Query: 216 ESINSKEGFWGFPCA 230
+SI + +GF GFPCA
Sbjct: 273 DSIVNPDGFAGFPCA 287
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 98/195 (50%), Gaps = 23/195 (11%)
Query: 67 VNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTS 126
V+W R Y +V N+ VG A +I+ LS +G D+H+IG SLGAH AA +
Sbjct: 108 VDWRHGSRA-MYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHTAA-EA 165
Query: 127 KYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTS------AFVQGQYSRS 180
++ RITGLDPA P F + RLD DA FVDVIHT + G +
Sbjct: 166 GRRLGGRVGRITGLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKV 225
Query: 181 GHVDFYMNGGIEQPGC--------------WNASNPF-DCNHRRAPQYFAESINSKEGFW 225
GH+DF+ NGG E PGC W F CNH R+ +Y++ S+ + +GF
Sbjct: 226 GHLDFFPNGGKEMPGCKKNVLSTITDIDGIWEGIGGFVSCNHLRSFEYYSSSVLNPDGFL 285
Query: 226 GFPCAGIISYLFGMC 240
G+PCA + C
Sbjct: 286 GYPCASYDEFQESKC 300
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 98/195 (50%), Gaps = 23/195 (11%)
Query: 67 VNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTS 126
V+W R Y +V N+ VG A +I+ LS +G D+H+IG SLGAH AA +
Sbjct: 106 VDWRHGSRA-MYTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHTAA-EA 163
Query: 127 KYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTS------AFVQGQYSRS 180
++ RITGLDPA P F + RLD DA FVDVIHT + G +
Sbjct: 164 GRRLGGRVGRITGLDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKV 223
Query: 181 GHVDFYMNGGIEQPGC--------------WNASNPF-DCNHRRAPQYFAESINSKEGFW 225
GH+DF+ NGG E PGC W F CNH R+ +Y++ S+ + +GF
Sbjct: 224 GHLDFFPNGGKEMPGCKKNVLSTITDIDGIWEGIGGFVSCNHLRSFEYYSSSVLNPDGFL 283
Query: 226 GFPCAGIISYLFGMC 240
G+PCA + C
Sbjct: 284 GYPCASYDEFQESKC 298
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 96/199 (48%), Gaps = 23/199 (11%)
Query: 52 ISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMH 111
I FK N V+W R Y + N+ VG VA ++ L +G ++H
Sbjct: 90 ICKNLFKVESVNCICVDWKGGSR-TGYTQASQNIRIVGAEVAYFVEVLKSSLGYSPSNVH 148
Query: 112 LIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA 171
+IG SLG+H A + + RITGLDPA P F RLD DAKFVDVIHT A
Sbjct: 149 VIGHSLGSHAAGEAGRRTNG-TIERITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDA 207
Query: 172 ------FVQGQYSRSGHVDFYMNGGIEQPGC--------------WNASNPF-DCNHRRA 210
G GH+DF+ NGG + PGC W + F CNH R+
Sbjct: 208 APIIPNLGFGMSQTVGHLDFFPNGGKQMPGCQKNILSQIVDIDGIWEGTRDFVACNHLRS 267
Query: 211 PQYFAESINSKEGFWGFPC 229
+Y+A+SI + +GF GFPC
Sbjct: 268 YKYYADSILNPDGFAGFPC 286
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 23/184 (12%)
Query: 67 VNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTS 126
V+W + Y +V N+ VG A +I++L + ++H+IG SLGAH A
Sbjct: 106 VDWSSGAKAE-YTQAVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAG 164
Query: 127 KYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSAFVQ------GQYSRS 180
+ L ++ R+TGLDPA P F + RLD DA+FVDVIHT A G +
Sbjct: 165 RRLEG-RVGRVTGLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKV 223
Query: 181 GHVDFYMNGGIEQPGC--------------WNASNPF-DCNHRRAPQYFAESINSKEGFW 225
GH+DF+ NGG + PGC W + + CNH ++ +Y++ SI + +GF
Sbjct: 224 GHMDFFPNGGKQMPGCKRSSFSTFIDINGIWQGAQDYLACNHLKSFEYYSSSILNPDGFL 283
Query: 226 GFPC 229
+PC
Sbjct: 284 AYPC 287
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 98/205 (47%), Gaps = 24/205 (11%)
Query: 57 FKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFS 116
F+ + N V+W + + Y + N+ VG VAQM+ L +HLIG S
Sbjct: 121 FEVEEVNCICVDWKKGSQA-TYTQAANNVRVVGAQVAQMLDILLTEYSYPPSKVHLIGHS 179
Query: 117 LGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA----- 171
LGAHVA + L RITGLDP F S + RLD DA FVDVIHT A
Sbjct: 180 LGAHVAGEAGS--KTPGLSRITGLDPVEASFESTPEEVRLDPSDADFVDVIHTDAAPLIP 237
Query: 172 FVQ-GQYSRSGHVDFYMNGGIEQPGC--------------WNASNPF-DCNHRRAPQYFA 215
F+ G + GH+DF+ NGG PGC W + F CNH R+ +Y+
Sbjct: 238 FLGFGTNQQMGHLDFFPNGGESMPGCKKNALSQIVDLDGIWAGTRDFVACNHLRSYKYYL 297
Query: 216 ESINSKEGFWGFPCAGIISYLFGMC 240
ESI + +GF +PC S+ C
Sbjct: 298 ESILNPDGFAAYPCTSYKSFESDKC 322
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 97/205 (47%), Gaps = 23/205 (11%)
Query: 57 FKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFS 116
FK N V+W R Y + N+ VG VA ++ L ++H+IG S
Sbjct: 95 FKVESVNCICVDWKSGSR-TAYSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHS 153
Query: 117 LGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHT--SAFVQ 174
LG+H A + + RITGLDPA P F RLD DA+FVDVIHT + F+
Sbjct: 154 LGSHAAGEAGRRTNG-AVGRITGLDPAEPCFQGTPELVRLDPSDAQFVDVIHTDIAPFIP 212
Query: 175 ----GQYSRSGHVDFYMNGGIEQPGC--------------WNASNPF-DCNHRRAPQYFA 215
G +GH+DF+ NGG E PGC W + F CNH R+ +Y+
Sbjct: 213 NLGFGMSQTAGHLDFFPNGGKEMPGCQKNVLSQIVDIDGIWQGTRDFAACNHLRSYKYYT 272
Query: 216 ESINSKEGFWGFPCAGIISYLFGMC 240
+SI + +GF GF CA + C
Sbjct: 273 DSILNPDGFAGFSCASYSDFTANKC 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,045,616
Number of Sequences: 62578
Number of extensions: 404481
Number of successful extensions: 939
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 11
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)