RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2108
(345 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 242 bits (621), Expect = 3e-79
Identities = 91/206 (44%), Positives = 112/206 (54%), Gaps = 6/206 (2%)
Query: 52 ISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMH 111
+ Y RGDYNV V+W P Y +V N VG +A+ + L G ++H
Sbjct: 57 LRKAYLSRGDYNVIVVDWGRG-ANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENVH 115
Query: 112 LIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA 171
LIG SLGAHVA + K L KL RITGLDPA P+F D + RLD DA+FVDVIHT
Sbjct: 116 LIGHSLGAHVAGFAGKRLNG-KLGRITGLDPAGPLFSGADPEDRLDPSDAQFVDVIHTDG 174
Query: 172 FVQGQYSRSGHVDFYMNGGIEQPGC---WNASNPFDCNHRRAPQYFAESINSKEGFWGFP 228
+ G GH DFY NGG +QPGC +S+ C+H+RA YFAESI S GF +P
Sbjct: 175 GLLGFSQPIGHADFYPNGGRDQPGCPKDILSSDFVACSHQRAVHYFAESILSPCGFVAYP 234
Query: 229 CAGIISYLFGMC-PVKEPIKLMGEMC 253
C+ +L G C P MG
Sbjct: 235 CSSYDEFLAGKCFPCGSGCVRMGYHA 260
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 162 bits (413), Expect = 2e-47
Identities = 73/194 (37%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 57 FKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFS 116
F+ NV V+W Y + N+ VG VA+++ L + + ++HLIG S
Sbjct: 98 FQVEGVNVIVVDWGSGSTT-FYRQATLNVRVVGAEVAKLLVELEEELNVSPENVHLIGHS 156
Query: 117 LGAHVAAYTSKYL-RPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSAFVQG 175
LGAHVA + KL RITGLDPA P F RLD DA FVD IHT
Sbjct: 157 LGAHVAGEAGRRTKGKTKLGRITGLDPAGPYFKGTPELTRLDPGDADFVDAIHTDTRPIP 216
Query: 176 QYS-----RSGHVDFYMNGGIEQPGCWN----ASNPFDCNHRRAPQYFAESINSKEGFWG 226
R GHVDF+ NGG EQPGC N + C H R+ +YFAES+ + F
Sbjct: 217 GLGMGTSQRVGHVDFFPNGGSEQPGCQNNVLEGTQFVACAHMRSVRYFAESLLNPRNFPA 276
Query: 227 FPCAGIISYLFGMC 240
+PC+ + C
Sbjct: 277 YPCSSYDEFSNNKC 290
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 104 bits (262), Expect = 3e-25
Identities = 70/213 (32%), Positives = 99/213 (46%), Gaps = 28/213 (13%)
Query: 51 FISTEYFKRGDYNVWFVNWPELCRG-PCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPD 109
++ Y + NV V+W L R Y S + VGK VA+ + + + +
Sbjct: 63 LVAALYEREPSANVIVVDW--LSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDN 120
Query: 110 MHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHT 169
+HL+G+SLGAHVA L +K+ RITGLDPA P F D L +DA FVDV+HT
Sbjct: 121 VHLLGYSLGAHVAGIAGS-LTKHKVNRITGLDPAGPTFEYADAPSTLSPDDADFVDVLHT 179
Query: 170 SAFVQGQYSRS-------GHVDFYMNGGIEQPGC--------------WNASNPFDCNHR 208
+G RS GH+D Y NGG QPGC N C+H
Sbjct: 180 --NTRGSPDRSIGIQRPVGHIDIYPNGGTFQPGCDIQETLLVIAEKGLGNMDQLVKCSHE 237
Query: 209 RAPQYFAES-INSKEGFWGFPCAGIISYLFGMC 240
R+ F +S +N + + C+ ++ G+C
Sbjct: 238 RSIHLFIDSLLNEENPSMAYRCSSKEAFNKGLC 270
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 89.5 bits (222), Expect = 1e-21
Identities = 39/153 (25%), Positives = 54/153 (35%), Gaps = 28/153 (18%)
Query: 84 NLEQVGKCVAQMIKRLSKYIGDVEPD--MHLIGFSLGAHVAAYTSKYLR---PYKLPRIT 138
+ + +A ++ L K PD +H+ G SLG +A LR +L R+
Sbjct: 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVY 61
Query: 139 GLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA-------FVQGQYSRSGHVDFYMNGGI 191
P + + RLD DA FVD I Y G +FY+NGG
Sbjct: 62 TFGPPRVGN-AAFAEDRLDPSDALFVDRIVNDNDIVPRLPPGGEGY-PHGGAEFYINGGK 119
Query: 192 EQPGCWNASNPFD--------------CNHRRA 210
QPGC C+H R
Sbjct: 120 SQPGCCKNVLEAVDIDFGNIGLSGNGLCDHLRY 152
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 39.3 bits (92), Expect = 0.001
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 13/114 (11%)
Query: 55 EYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIG 114
E G Y V + P + Y+LE +A ++ L +G V L+G
Sbjct: 19 EALAAG-YRVLAPDLPGHGDSDGPPRTPYSLEDDAADLAALLDALG--LGPV----VLVG 71
Query: 115 FSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIH 168
SLG VA + RP ++ + + P + + L ++ A + ++
Sbjct: 72 HSLGGAVALAAAA-RRPERVAGLVLISPPLRDL-----EELLAADAAALLALLR 119
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 29.4 bits (66), Expect = 2.6
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 74 RGPCY-----VISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLG-AHVAAYTSK 127
RG + Y + + + + ++ L + V +L+G S+G AY +K
Sbjct: 9 RGFGRSSPPKDFADYRFDDLAEDLEALLDALG--LDKV----NLVGHSMGGLIALAYAAK 62
Query: 128 YLRPYKLPRITGLDPAMPMFMSRD 151
Y P ++ + + P +S
Sbjct: 63 Y--PDRVKALVLVGTVHPAGLSSP 84
>gnl|CDD|183053 PRK11245, folX, D-erythro-7,8-dihydroneopterin triphosphate
2'-epimerase; Provisional.
Length = 120
Score = 28.4 bits (64), Expect = 2.7
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 16 NFRLRRFYAIVTEEILIRQKTFTNVIYH 43
N RLR F I EEI RQ NV H
Sbjct: 12 NLRLRTFIGIKEEEINNRQDVVINVTIH 39
>gnl|CDD|227546 COG5221, DOP1, Dopey and related predicted leucine zipper
transcription factors [Transcription].
Length = 1618
Score = 29.5 bits (66), Expect = 3.4
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 125 TSKYLRPYKLP-RITGLD--PAMPMFMSRDRDHRLDSEDAKFVDVIHTSAF 172
++ R + T L+ P +P MSRD ++ V TS F
Sbjct: 1143 SASLFRKVPIKFVETILEGSPCIPFLMSRDFGEQIYISIMNLVSNNGTSVF 1193
>gnl|CDD|235463 PRK05434, PRK05434, phosphoglyceromutase; Provisional.
Length = 507
Score = 29.3 bits (67), Expect = 3.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 181 GHVDFYMNGGIEQP 194
HV F+ NGG E+P
Sbjct: 334 AHVTFFFNGGREEP 347
>gnl|CDD|225100 COG2189, COG2189, Adenine specific DNA methylase Mod [DNA
replication, recombination, and repair].
Length = 590
Score = 29.4 bits (66), Expect = 3.6
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Query: 7 YCFTVSLTLNFRLRRFYA---IVTEEILIRQKTFTNVIYHLMSISIFFISTEYFKRGDYN 63
Y + T R+K + ++ Y + SI I N
Sbjct: 343 YKKEKLDKKSKNRVIDPINGNGTTYGETARRKGYNDLKYIIKSIKEVKIEKNPKAVPYLN 402
Query: 64 VWFVNWPELCRGPCYVISVYNLEQVGK 90
+++ + +S +N E G
Sbjct: 403 DRILDYFAGDFTTAHAVSYWNKEDKGN 429
>gnl|CDD|225143 COG2234, Iap, Predicted aminopeptidases [General function
prediction only].
Length = 435
Score = 29.1 bits (65), Expect = 4.2
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 159 EDAKFVDVIHTSAFVQGQYSRSGHVDFYMNG 189
A + + VQ RS H F G
Sbjct: 316 AVAALIGRPVDPSTVQDFDPRSDHYPFTEAG 346
>gnl|CDD|220859 pfam10717, ODV-E18, Occlusion-derived virus envelope protein
ODV-E18. This family of occlusion-derived viral
envelope proteins are detected in viral-induced
intranuclear microvesicles and are not detected in the
plasma membrane, cytoplasmic membranes, or the nuclear
envelope. The ODV-E18 protein is encoded by baculovirus
late genes with transcription initiating from a TAAG
motif. It exists as a dimer in the ODV envelope and
contains a hydrophobic domain which is putatively acting
as a target or retention signal for intranuclear
microvesicles.
Length = 85
Score = 27.0 bits (60), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 266 LHSSTMKFTLVCVVFIVSTILLFQMSAAT 294
L+ +T+ L+ +V I+ ILLFQ S+
Sbjct: 22 LNPNTLMTILIVLVIIILLILLFQSSSNG 50
>gnl|CDD|235745 PRK06214, PRK06214, sulfite reductase; Provisional.
Length = 530
Score = 28.9 bits (65), Expect = 4.3
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 89 GKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFM 148
GK A+M+K+L++ G A AA + L P R +P F+
Sbjct: 121 GKETARMLKKLAEEFGAAPAAAAPAA---AAADAAPAAAALGPLGTSR---DNPVEATFL 174
Query: 149 SRDRDHRLDSE 159
SR R ++ SE
Sbjct: 175 SRRRLNKPGSE 185
>gnl|CDD|218910 pfam06144, DNA_pol3_delta, DNA polymerase III, delta subunit. DNA
polymerase III, delta subunit (EC 2.7.7.7) is required
for, along with delta' subunit, the assembly of the
processivity factor beta(2) onto primed DNA in the DNA
polymerase III holoenzyme-catalyzed reaction. The delta
subunit is also known as HolA.
Length = 172
Score = 28.0 bits (63), Expect = 5.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 90 KCVAQMIKRLSKYIGDVEPDMHLI 113
K +++KRL +Y+ + D LI
Sbjct: 72 KLNEKLLKRLEEYLSNPPEDTLLI 95
>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 28.1 bits (63), Expect = 5.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 112 LIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMS 149
+ GFS GA VA YT+ P L I A+P+
Sbjct: 106 IGGFSQGAAVALYTALTS-PQPLGGIIAFSGALPLPQK 142
>gnl|CDD|226234 COG3711, BglG, Transcriptional antiterminator [Transcription].
Length = 491
Score = 28.2 bits (63), Expect = 8.4
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 13 LTLNFRLRRFYAIVTEEILIRQKTFTNVIYHLMSISIFFISTEYF 57
LTL ++ R+ Y I +E R+ N+I +L+S F
Sbjct: 133 LTLVYKRRKGYKIFGDEWNKRRA-LINLIANLLSKDYGEFLILLF 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.138 0.442
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,308,870
Number of extensions: 1623753
Number of successful extensions: 1681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1668
Number of HSP's successfully gapped: 25
Length of query: 345
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 247
Effective length of database: 6,590,910
Effective search space: 1627954770
Effective search space used: 1627954770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.6 bits)