RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2108
(345 letters)
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 207 bits (529), Expect = 1e-63
Identities = 72/230 (31%), Positives = 97/230 (42%), Gaps = 25/230 (10%)
Query: 45 MSISIFFISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIG 104
+ + FK N V+W R Y + N+ VG VA ++ L
Sbjct: 83 EESWLSTMCQNMFKVESVNCICVDWKSGSR-TAYSQASQNVRIVGAEVAYLVGVLQSSFD 141
Query: 105 DVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFV 164
++H+IG SLG+H A + + RITGLDPA P F RLD DA+FV
Sbjct: 142 YSPSNVHIIGHSLGSHAAGEAGRRT-NGAVGRITGLDPAEPCFQGTPELVRLDPSDAQFV 200
Query: 165 DVIHTSA------FVQGQYSRSGHVDFYMNGGIEQPGCWNA---------------SNPF 203
DVIHT G +GH+DF+ NGG E PGC +
Sbjct: 201 DVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQKNVLSQIVDIDGIWQGTRDFA 260
Query: 204 DCNHRRAPQYFAESINSKEGFWGFPCAGIISYLFGMC--PVKEPIKLMGE 251
CNH R+ +Y+ +SI + +GF GF CA + C E MG
Sbjct: 261 ACNHLRSYKYYTDSILNPDGFAGFSCASYSDFTANKCFPCSSEGCPQMGH 310
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 207 bits (527), Expect = 1e-63
Identities = 74/215 (34%), Positives = 102/215 (47%), Gaps = 13/215 (6%)
Query: 45 MSISIFFISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIG 104
+ + + F+ N V+W + Y + N+ VG VA +++ LS +
Sbjct: 84 ENSWLSDMCKNMFQVEKVNCICVDWKGGSK-AQYSQASQNIRVVGAEVAYLVQVLSTSLN 142
Query: 105 DVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFV 164
++H+IG SLGAH A K L + RITGLDPA P F + RLD DAKFV
Sbjct: 143 YAPENVHIIGHSLGAHTAGEAGKRLNG-LVGRITGLDPAEPYFQDTPEEVRLDPSDAKFV 201
Query: 165 DVIHTSA------FVQGQYSRSGHVDFYMNGGIEQPGCWNASNPFDCNHRRAPQYFAESI 218
DVIHT G + GH+DF+ NGG + PGC CNH R+ +Y+ SI
Sbjct: 202 DVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDMPGCK---TGISCNHHRSIEYYHSSI 258
Query: 219 NSKEGFWGFPCAGIISYLFGMC--PVKEPIKLMGE 251
+ EGF G+PCA + C + MG
Sbjct: 259 LNPEGFLGYPCASYDEFQESGCFPCPAKGCPKMGH 293
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 207 bits (528), Expect = 2e-63
Identities = 68/230 (29%), Positives = 102/230 (44%), Gaps = 25/230 (10%)
Query: 45 MSISIFFISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIG 104
+ + + N V+W + Y +V N+ VG A +I++L +
Sbjct: 84 EDSWPSDMCKKILQVETTNCISVDWSSGAKAE-YTQAVQNIRIVGAETAYLIQQLLTELS 142
Query: 105 DVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFV 164
++H+IG SLGAH A + L ++ R+TGLDPA P F + RLD DA+FV
Sbjct: 143 YNPENVHIIGHSLGAHTAGEAGRRLEG-RVGRVTGLDPAEPCFQDASEEVRLDPSDAQFV 201
Query: 165 DVIHTSA------FVQGQYSRSGHVDFYMNGGIEQPGCWN---------------ASNPF 203
DVIHT A G + GH+DF+ NGG + PGC A +
Sbjct: 202 DVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQMPGCKRSSFSTFIDINGIWQGAQDYL 261
Query: 204 DCNHRRAPQYFAESINSKEGFWGFPCAGIISYLFGMCPV--KEPIKLMGE 251
CNH ++ +Y++ SI + +GF +PC + C MG
Sbjct: 262 ACNHLKSFEYYSSSILNPDGFLAYPCDSYDKFQENGCFPCPAGGCPKMGH 311
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 201 bits (512), Expect = 4e-61
Identities = 77/230 (33%), Positives = 106/230 (46%), Gaps = 25/230 (10%)
Query: 45 MSISIFFISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIG 104
+ + + F+ N V+W R Y + YN VG +A +++ LS +G
Sbjct: 84 EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMG 142
Query: 105 DVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFV 164
++HLIG SLGAHV + L + RITGLDPA P F + RLD DA FV
Sbjct: 143 YSPENVHLIGHSLGAHVVGEAGRRLEG-HVGRITGLDPAEPCFQGLPEEVRLDPSDAMFV 201
Query: 165 DVIHTSA------FVQGQYSRSGHVDFYMNGGIEQPGCWNA---------------SNPF 203
DVIHT + G + GH+DF+ NGG E PGC N
Sbjct: 202 DVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDINGIWEGTQNFV 261
Query: 204 DCNHRRAPQYFAESINSKEGFWGFPCAGIISYLFGMCPV--KEPIKLMGE 251
CNH R+ +Y+A SI + +GF G+PC+ + C +E MG
Sbjct: 262 ACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMGH 311
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 195 bits (497), Expect = 6e-59
Identities = 75/230 (32%), Positives = 100/230 (43%), Gaps = 26/230 (11%)
Query: 45 MSISIFFISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIG 104
+ + FK + N V+W + + Y + N+ VG VAQM+ LS
Sbjct: 84 EENWLLDMCKNMFKVEEVNCICVDWKKGSQ-TSYTQAANNVRVVGAQVAQMLSMLSANYS 142
Query: 105 DVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFV 164
+ LIG SLGAHVA L RITGLDP F + RLD DA FV
Sbjct: 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG--LGRITGLDPVEASFQGTPEEVRLDPTDADFV 200
Query: 165 DVIHTSA------FVQGQYSRSGHVDFYMNGGIEQPGCWN---------------ASNPF 203
DVIHT A G + GH+DF+ NGG E PGC +
Sbjct: 201 DVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDLDGIWEGTRDFV 260
Query: 204 DCNHRRAPQYFAESINSKEGFWGFPCAGIISYLFGMCPV--KEPIKLMGE 251
CNH R+ +Y++ESI + +GF +PCA ++ C + MG
Sbjct: 261 ACNHLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQMGH 310
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 38.0 bits (88), Expect = 0.003
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 9/92 (9%)
Query: 81 SVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVA-AYTSKYLRPYKLPRITG 139
+ L + + + + L S+G A ++ G
Sbjct: 89 ANVGLRDWVNAILMIFEHF-----KFQS-YLLCVHSIGGFAALQIMNQS--SKACLGFIG 140
Query: 140 LDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA 171
L+P M L + A + T+A
Sbjct: 141 LEPTTVMIYRAGFSSDLYPQLALRRQKLKTAA 172
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 36.3 bits (83), Expect = 0.010
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 56 YFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGF 115
+ Y +++ P + + + I L G+ + ++ +
Sbjct: 55 LSTQLGYTPCWISPPPFMLND--------TQVNTEYMVNAITALYAGSGNNKLP--VLTW 104
Query: 116 SLGAHVAAYTSKYL 129
S G VA + +
Sbjct: 105 SQGGLVAQWGLTFF 118
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 35.9 bits (82), Expect = 0.015
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 56 YFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGF 115
+ Y +++ P + + + I L G+ + ++ +
Sbjct: 89 LSAQLGYTPCWISPPPFMLND--------TQVNTEYMVNAITTLYAGSGNNKLP--VLTW 138
Query: 116 SLGAHVAAYTSKYL 129
S G VA + +
Sbjct: 139 SQGGLVAQWGLTFF 152
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein
structure initiative, MCSG, midwest center for
structural genomics; 1.8A {Bacillus subtilis} SCOP:
c.69.1.31
Length = 192
Score = 34.0 bits (77), Expect = 0.043
Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 3/124 (2%)
Query: 65 WFVNWPELCRGPCYVISVYNLEQVGKC-VAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAA 123
WF + + N+ + + + LS Y + + +L+ SLG
Sbjct: 21 WFPWLKKRLLADGVQADILNMPNPLQPRLEDWLDTLSLYQHTLHENTYLVAHSLGCPAIL 80
Query: 124 YTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSAFVQGQYSRSGHV 183
++L+ + G+ S LD D + + +
Sbjct: 81 RFLEHLQLR--AALGGIILVSGFAKSLPTLQMLDEFTQGSFDHQKIIESAKHRAVIASKD 138
Query: 184 DFYM 187
D +
Sbjct: 139 DQIV 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.12
Identities = 39/227 (17%), Positives = 69/227 (30%), Gaps = 70/227 (30%)
Query: 35 KTFTNVIYHLMSISIFFI---STEYFKRGDYNVWFVNWPELCR--------GPCYVISVY 83
++F + +++ FFI E + + ++ P + P ++S+
Sbjct: 290 ESFFVSVRKAITVL-FFIGVRCYEAY--PNTSLP----PSILEDSLENNEGVPSPMLSIS 342
Query: 84 NL--EQVGKCVAQMIKRLSK----YIGDV-EPDMH--------LIGFSLGAH-VAA---- 123
NL EQV V + L I V L G +L A
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 124 ------YTSKYLRPYK--LPRITG------LDPAMPMFMSRDRDHRL--DSEDAKFVDVI 167
++ + L+ LP + L PA + + + +++D + + V
Sbjct: 403 DQSRIPFSERKLKFSNRFLP-VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ-IPVY 460
Query: 168 HTSAFVQGQYSRSG-------HVDFYMNGGIEQPGCWNASNPFDCNH 207
T G R VD I P W + F H
Sbjct: 461 DT---FDGSDLRVLSGSISERIVD--CI--IRLPVKWETTTQFKATH 500
Score = 30.8 bits (69), Expect = 0.81
Identities = 38/219 (17%), Positives = 71/219 (32%), Gaps = 77/219 (35%)
Query: 12 SLTLNF------RLRRFYAIVTEEILIRQKTFTNVIYHLMSISIFFISTEYFKRGDYNVW 65
+LT++F R+R Y+ + E ++ K T I FK + +
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI---------------FKEINEHST 1715
Query: 66 FVNWPELCRGPCYVISVYNLEQ--------VGKCVAQMIKRLSKYIGDVEPDMHLIGFSL 117
+ R + + Q + K + +K SK G + D G SL
Sbjct: 1716 SYTF----RSE---KGLLSATQFTQPALTLMEKAAFEDLK--SK--GLIPADATFAGHSL 1764
Query: 118 G---AHVAAYTSKYLRP---YKLPRITGLDPAMPMFMSRDRDHRLD-------------- 157
G A + + + ++ G+ M + + RD R +
Sbjct: 1765 GEYAALASL--ADVMSIESLVEVVFYRGM--TMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 158 -SEDA--KFVDVI--HTSAFVQ--------GQYSRSGHV 183
S++A V+ + T V+ QY +G +
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL 1859
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 31.6 bits (72), Expect = 0.25
Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 48 SIFFISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVE 107
F Y ++ + + G +++ ++++ G
Sbjct: 17 FNFAGIKSYLVSQGWSRDKLYAVDFWDKTG------TNYNNGPVLSRFVQKVLDETGA-- 68
Query: 108 PDMHLIGFSLGAHVA-AYTSKYLRPYKLPRITGLDPA 143
+ ++ S+G Y K+ + L A
Sbjct: 69 KKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGA 105
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 31.9 bits (73), Expect = 0.25
Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 35/142 (24%)
Query: 60 GDYNVWFVNWPELCRGPCYVISV---------------YNLEQVGKCVAQMIKRLSKYIG 104
D + + + +VI++ +N + + + +++ +
Sbjct: 27 SDSRTYHNHIEKFTDN-YHVITIDLPGHGEDQSSMDETWNFDYITTLLDRILDKYK--DK 83
Query: 105 DVEPDMHLIGFSLGAHVA-AYTSKYLRPYKLP-RITGL-----DPAMPMFMSRDRDHRLD 157
+ L G+S+G VA Y I+ L P + ++ +D
Sbjct: 84 SI----TLFGYSMGGRVALYYAING------HIPISNLILESTSPGIKEEANQLERRLVD 133
Query: 158 SEDAKFVDVIHTSAFVQGQYSR 179
AK +D+ FV
Sbjct: 134 DARAKVLDIAGIELFVNDWEKL 155
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 31.9 bits (73), Expect = 0.25
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDP 142
Y ++ + + IK + + + + ++G S+G S L + + +
Sbjct: 86 YTQDRRIRHLHDFIKAM-----NFDGKVSIVGNSMGGATGLGVS-VLHSELVNALVLMGS 139
Query: 143 A 143
A
Sbjct: 140 A 140
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 31.5 bits (72), Expect = 0.36
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDP 142
+LE K V +++ L + +V +IG S+ + +A S + ++ IT + P
Sbjct: 79 SSLEGYAKDVEEILVALD--LVNV----SIIGHSVSSIIAGIASTH-VGDRISDITMICP 131
Query: 143 AMPMFMSRDRD--HRLDSEDA 161
+ P FM+ D + +D
Sbjct: 132 S-PCFMNFPPDYVGGFERDDL 151
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 31.6 bits (71), Expect = 0.39
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 81 SVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGL 140
+ +N + V ++ I +IG S+G A L+P + +
Sbjct: 110 TNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACD-VLQPNLFHLLILI 168
Query: 141 DPAM 144
+P +
Sbjct: 169 EPVV 172
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 31.3 bits (71), Expect = 0.42
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 104 GDVEPD-MHLIGFSLGAHVAAYTSKYLRPYKL----PRITGLDPAMPMFMSRDRDHRLDS 158
V+ + ++G S G +++A ++ L P + +S + D L
Sbjct: 96 PYVDAHSIAVVGLSYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMD 155
Query: 159 EDAKFVDVIHTSAF 172
+ + A
Sbjct: 156 YRRRALAPGDNLAL 169
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 30.8 bits (70), Expect = 0.63
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGL-- 140
Y+ + + ++ L D+ D+ L+ S+G A +Y+ + R+
Sbjct: 67 YDFDTFADDLNDLLTDL-----DLR-DVTLVAHSMGGGELA---RYVGRHGTGRLRSAVL 117
Query: 141 -DPAMPMFMSRDRD 153
P+ + D++
Sbjct: 118 LSAIPPVMIKSDKN 131
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 30.3 bits (69), Expect = 0.80
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGL-- 140
+ + +AQ+I+ L D++ ++ L+GFS+G A +Y+ + R+ GL
Sbjct: 67 NDYDTFADDIAQLIEHL-----DLK-EVTLVGFSMGGGDVA---RYIARHGSARVAGLVL 117
Query: 141 -DPAMPMFMSRD 151
P+F +
Sbjct: 118 LGAVTPLFGQKP 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.80
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 25/106 (23%)
Query: 37 FTNVIYHLMSISIFFISTEYFKRGDYNVWFVN--WPE--LCR---GPCYVISVYNLEQVG 89
++++ +HL +I E + + F++ + E + S+ N Q
Sbjct: 474 YSHIGHHLKNIE----HPERMT--LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ- 526
Query: 90 KCVAQMIKRLSKYIGDVEPDMH-----LIGFSLGAHVAAYTSKYLR 130
+K YI D +P ++ F SKY
Sbjct: 527 ------LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 29.4 bits (65), Expect = 2.4
Identities = 51/352 (14%), Positives = 100/352 (28%), Gaps = 85/352 (24%)
Query: 24 AIVTEEI--LIRQKTFTNVIYHLMSI------SIFFISTEYFKRGDYNVWFVN-WPELCR 74
+ EEI +I K + L + E R +Y + ++ R
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQR 103
Query: 75 GPCYVISVYNLEQVGK-------------CVAQMIKRLSKYIGDVEPDMHLI-----GF- 115
P + +Y EQ + Q +L + + ++ P +++ G
Sbjct: 104 QPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 116 --SLGAHVA-AYTSKYLRPYKLPRIT-GL--DPAMPMFMSRDRDHRLDSEDAKFVD---- 165
+ V +Y + +K+ + P + M + +++D D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 166 VIHTSAFVQGQYSRSGHVDFYMNG-----GIEQPGCWNASNPFD--C------------N 206
+ +Q + R Y N ++ WNA F+ C +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTD 279
Query: 207 HRRAPQYFAESIN-SKEGFWGFPCAGIISYLFGMCPVKEP----------IKLMGEMCAE 255
A S++ ++ P P + ++ E +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 256 SFITSDTCFHLHSSTMKFTLVCVVFIVSTILLF--QMSAATYRKPPFNGSIF 305
T D H + K T + I + A YRK S+F
Sbjct: 340 GLATWD--NWKHVNCDKLT--------TIIESSLNVLEPAEYRKMFDRLSVF 381
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 30.7 bits (70), Expect = 0.80
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 82 VYNLEQVGKC-VAQMIKRLSKYIGDVEPD--MHLIGFSLGAHVAAYTSKYLRP--YKLPR 136
Y L + R + I ++P+ + L G+S G +A +K L + R
Sbjct: 1083 SYKLCAFDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFEAAKKLEEQGRIVQR 1142
Query: 137 ITGLDPAMPMFMSRDRDHRLDSEDAKFVDVI 167
I +D +S ++S+ ++V
Sbjct: 1143 IIMVDSYKKQGVSDLDGRTVESDVEALMNVN 1173
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 30.2 bits (68), Expect = 0.82
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDP 142
+ E + K V +++ + GD+ P + LIG S+G +A +T+ L + +D
Sbjct: 88 LSAETMAKDVGNVVEAMY---GDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDV 144
Query: 143 A----------MPMFMSRDRDHRLDSEDA 161
M F+ E+A
Sbjct: 145 VEGTAMDALNSMQNFLRGRPKTFKSLENA 173
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 29.9 bits (68), Expect = 1.0
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 81 SVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAA 123
E+ K ++K L V L+G+S G A
Sbjct: 73 PADFFERDAKDAVDLMKALK--FKKV----SLLGWSDGGITAL 109
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 29.9 bits (68), Expect = 1.1
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 109 DMHLIGFSLGAHVAA-YTSKYLRPYKLPRITGLDPAMPMFMSRD 151
D L+GFS G A Y S Y ++ ++ L P + D
Sbjct: 91 DAVLVGFSTGTGEVARYVSSY-GTARIAKVAFLASLEPFLLKTD 133
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 29.8 bits (67), Expect = 1.2
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLDP 142
Y+ +Q+ +++RL V +IG S+G +A + L P ++ R+ ++P
Sbjct: 95 YSFQQLAANTHALLERL-----GVA-RASVIGHSMGGMLATRYA-LLYPRQVERLVLVNP 147
Query: 143 AMPMFMSRDR 152
Sbjct: 148 IGLEDWKALG 157
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 29.6 bits (67), Expect = 1.3
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 83 YNLEQVGKCVAQMIKRL--SKYIGDVEPDMHLIGFSLGAHVAA-YTSKYLRPYKLPRITG 139
+ VA I +K+ ++ LIG+S+G + K + ++
Sbjct: 61 STVYGYIDNVANFITNSEVTKHQKNI----TLIGYSMGGAIVLGVALKK--LPNVRKVVS 114
Query: 140 LDPAMPMFMSRDRD 153
L F D+D
Sbjct: 115 LSGG-ARFDKLDKD 127
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAA-YTSKY 128
+ + + ++ +L D+ +HL+G S+G H + +T K+
Sbjct: 88 SRSDLNARILKSVVDQL-----DIA-KIHLLGNSMGGHSSVAFTLKW 128
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 29.5 bits (66), Expect = 1.4
Identities = 11/93 (11%), Positives = 23/93 (24%), Gaps = 9/93 (9%)
Query: 61 DYNVWFVNWPELCRG-----PCYVISVYNLEQVG---KCVAQMIKRLSKYIGDVEPDMHL 112
+ + + + + A +K G
Sbjct: 56 TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATF 115
Query: 113 IGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMP 145
+G+S GA++ + L P + L P
Sbjct: 116 LGYSNGANLVSSLM-LLHPGIVRLAALLRPMPV 147
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 29.3 bits (66), Expect = 1.5
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAA-YTSKYLRPYKLPRITGLD 141
Y + + Q++++L +++ ++ L+GFS+G A Y S Y ++ ++
Sbjct: 75 YEYDTFTSDLHQLLEQL-----ELQ-NVTLVGFSMGGGEVARYISTY-GTDRIEKVVFAG 127
Query: 142 PAMPMFMSRDRD 153
P +
Sbjct: 128 AVPPYLYKSEDH 139
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 29.3 bits (65), Expect = 1.8
Identities = 23/167 (13%), Positives = 51/167 (30%), Gaps = 13/167 (7%)
Query: 54 TEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLI 113
+ F R + E +L+Q+ + +++ L+ + +
Sbjct: 65 IQNFVRVHVDAP--GMEEGAPVFPLGYQYPSLDQLADMIPCILQYLN------FSTIIGV 116
Query: 114 GFSLGAHVAA-YTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFV-DVIHTSA 171
G GA++ + Y + P + + ++ D + + D+I
Sbjct: 117 GVGAGAYILSRYALNH--PDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPDMILGHL 174
Query: 172 FVQGQYSR-SGHVDFYMNGGIEQPGCWNASNPFDCNHRRAPQYFAES 217
F Q + S S + Y P N ++ + R F
Sbjct: 175 FSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERG 221
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 29.3 bits (66), Expect = 2.0
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGLD- 141
Y +A +I+ L L+G SLGA + + P + + +D
Sbjct: 115 YEANDYADDIAGLIRTL-----ARGH-AILVGHSLGARNSVTAA-AKYPDLVRSVVAIDF 167
Query: 142 -PAMPMFMSRDRDHRLDSEDAKFVDVIHTSAFVQGQYSR 179
P + + R+++ F D+ A++ G+Y
Sbjct: 168 TPYIETEALDALEARVNAGSQLFEDIKAVEAYLAGRYPN 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 94 QMIKRLS---K-YIGDVEPDMHLIGFSLGAHV 121
Q +K+L K Y D P ++ A +
Sbjct: 20 QALKKLQASLKLYADDSAP-----ALAIKATM 46
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
SCOP: c.69.1.13
Length = 302
Score = 29.0 bits (64), Expect = 2.2
Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 6/84 (7%)
Query: 65 WFVNWPELCRGPCYVISV------YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLG 118
+ + V + +L + + V + + + +HLI +S G
Sbjct: 54 HLLEYINETHPGTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMAKAPQGVHLICYSQG 113
Query: 119 AHVAAYTSKYLRPYKLPRITGLDP 142
V + + + L
Sbjct: 114 GLVCRALLSVMDDHNVDSFISLSS 137
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt,
isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana}
PDB: 3igy_B* 3nvl_A
Length = 561
Score = 29.1 bits (66), Expect = 2.4
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 181 GHVDFYMNGGIEQP 194
GHV ++ NG
Sbjct: 359 GHVTYFWNGNRSGK 372
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 28.6 bits (63), Expect = 2.6
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 84 NLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGA-HVAAYTSKYLRPYKLPRI 137
N ++ + +++ +L G + +G S+G A Y Y LP++
Sbjct: 75 NFKENAYWIKEVLSQLKSQFGI--QQFNFVGHSMGNMSFAFYMKNYGDDRHLPQL 127
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
isomerase, alpha/beta-type structure; HET: 2PG; 1.4A
{Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3
PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Length = 511
Score = 29.0 bits (66), Expect = 2.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 182 HVDFYMNGGIEQP 194
HV F+M+GG E+
Sbjct: 339 HVTFFMSGGREEE 351
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 28.2 bits (63), Expect = 3.0
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 92 VAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGL 140
V +I+ + D + L GFS G V +T+ L + L
Sbjct: 91 VTDLIEAQKRTGIDAS-RIFLAGFSQGGAVVFHTAFINWQGPLGGVIAL 138
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin,
transferase; HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 28.7 bits (64), Expect = 3.0
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 82 VYNLEQVG----KCVAQMIKRLSKYIGDVEPDM--HLIGFSLGAHVA 122
Y L+ + + I V+P+ + G+S GA VA
Sbjct: 73 TYGLQCTRAAPLDSIHSLAAYYIDCIRQVQPEGPYRVAGYSYGACVA 119
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 28.3 bits (63), Expect = 3.1
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 80 ISVYNLEQVG----KCVAQMIKRLSKYIGDVEPDM--HLIGFSLGAHVA 122
I Y L+ + + I V+P+ + G+S GA VA
Sbjct: 49 IPTYGLQCTRAAPLDSIHSLAAYYIDCIRQVQPEGPYRVAGYSYGACVA 97
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 28.5 bits (64), Expect = 3.3
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 111 HLIGFSLGAHVA-AYTSKYLRPYKLP-RITGL---DPAMPMFMSRDRDHRLDSEDAKFVD 165
G S G +A Y ++ +T + A + +D S++ KF
Sbjct: 94 GFAGHSAGGMLALVYATEA------QESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNR 147
Query: 166 VI 167
++
Sbjct: 148 IV 149
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 28.5 bits (63), Expect = 3.4
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 60 GDYNVWFVNWPELCRGPCYVISVYNLEQVG--KCVAQMIKRLSKYIGDV-----EPDMHL 112
G W+ +L + V NL ++L Y+ V ++L
Sbjct: 25 GVLEYWYGIQEDLQQRGATVYVA-NLSGFQSDDGPNGRGEQLLAYVKTVLAATGATKVNL 83
Query: 113 IGFSLGAHVAAYTSKYLRPYKLPRITGL 140
+G S G + Y + + P + +T +
Sbjct: 84 VGHSQGGLTSRYVAA-VAPDLVASVTTI 110
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 28.3 bits (62), Expect = 3.5
Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 46 SISIFFISTEYFKRGDY---NVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKY 102
+ K Y ++ V + + ++ + + I ++ Y
Sbjct: 66 YGTPARSVYAELKARGYNDCEIFGVTYLSSSEQGSAQYNYHSSTKYAI-IKTFIDKVKAY 124
Query: 103 IGDVEPDMHLIGFSLGAHVAAYTSKYL 129
G + + ++ S+G ++ T +Y
Sbjct: 125 TG--KSQVDIVAHSMGVSMSLATLQYY 149
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 28.6 bits (64), Expect = 3.5
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 109 DMHLIGFSLG-AHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRD 153
D L+GFS+G VA Y S Y ++ + L P + D +
Sbjct: 92 DAVLVGFSMGTGEVARYVSSY-GTARIAAVAFLASLEPFLLKTDDN 136
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 27.7 bits (62), Expect = 6.3
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 111 HLIGFSLGAHVAA 123
L+G +LG A
Sbjct: 109 PLVGNALGGGTAV 121
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 27.4 bits (61), Expect = 6.4
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLG-AHVAAYTSKYLRPYKLPRITGLD 141
Y+ + + +++ L D+ D+ L+GFS+G +A Y ++Y ++ ++ L
Sbjct: 71 YDYDTFAADLHTVLETL-----DLR-DVVLVGFSMGTGELARYVARY-GHERVAKLAFLA 123
Query: 142 PAMPMFMSRDRD 153
P + RD +
Sbjct: 124 SLEPFLVQRDDN 135
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding
protein; 2.25A {Drosophila mauritiana}
Length = 227
Score = 27.4 bits (59), Expect = 6.7
Identities = 7/86 (8%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 20 RRFYAIVTEEILIRQ--KTFTNVIYHLMSISIFFISTEYFKRGDYNVWFVNWPELCRGPC 77
A + L + + Y + F ++ + +
Sbjct: 134 PSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLD 193
Query: 78 YVISVYNLEQVGKCVAQMIKRLSKYI 103
+ + E + + ++ +R K +
Sbjct: 194 EWFAAKDDEFYWRGIHKLPERWEKCV 219
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 27.3 bits (61), Expect = 6.7
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 83 YNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGL-- 140
+++ +AQ+I+ L D+ D L GFS G A +Y+ + R+
Sbjct: 67 NDMDTYADDLAQLIEHL-----DLR-DAVLFGFSTGGGEVA---RYIGRHGTARVAKAGL 117
Query: 141 -DPAMPMFMSRDRDHR 155
P+ + + +
Sbjct: 118 ISAVPPLMLKTEANPG 133
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 27.5 bits (61), Expect = 7.0
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 112 LIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPM 146
L+G + G VA+ + P + ++ L PA +
Sbjct: 123 LVGHAQGGVVASMLAGL-YPDLIKKVVLLAPAATL 156
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 27.0 bits (60), Expect = 7.5
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 92 VAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRPYKLPRITGL 140
V +I E + L GFS G V +T+ L + L
Sbjct: 101 VIALIDEQRAKGIAAE-RIILAGFSQGGAVVLHTAFRRYAQPLGGVLAL 148
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 27.2 bits (61), Expect = 7.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 111 HLIGFSLGAHVAAY 124
+G+SLG VA+
Sbjct: 77 IWLGWSLGGLVASQ 90
>3hc7_A Gene 12 protein, GP12; alpha/beta sandwich, cell adhesion; 2.00A
{Mycobacterium phage D29}
Length = 254
Score = 27.0 bits (59), Expect = 7.7
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 88 VGKCVAQMIKRLSKYIGDVEPD-MHLIGFSLGAHVAA 123
V K VA++I ++ + + G+S GA V
Sbjct: 53 VEKGVAELILQIELKLDADPYADFAMAGYSQGAIVVG 89
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 27.0 bits (60), Expect = 9.9
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 111 HLIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDA 161
IG S+G + L P ++ ++ +D A + R D + +A
Sbjct: 84 TFIGHSMGGKAVMALT-ALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINA 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.442
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,285,323
Number of extensions: 305264
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 58
Length of query: 345
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 251
Effective length of database: 4,077,219
Effective search space: 1023381969
Effective search space used: 1023381969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.3 bits)