RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2108
(345 letters)
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 184 bits (469), Expect = 2e-56
Identities = 77/223 (34%), Positives = 105/223 (47%), Gaps = 25/223 (11%)
Query: 52 ISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMH 111
+ + F+ N V+W R Y + YN VG +A +++ LS +G ++H
Sbjct: 91 MCKKMFQVEKVNCICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVH 149
Query: 112 LIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA 171
LIG SLGAHV + L + RITGLDPA P F + RLD DA FVDVIHT +
Sbjct: 150 LIGHSLGAHVVGEAGRRL-EGHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDS 208
Query: 172 ------FVQGQYSRSGHVDFYMNGGIEQPGCWN---------------ASNPFDCNHRRA 210
G + GH+DF+ NGG E PGC N CNH R+
Sbjct: 209 APIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDINGIWEGTQNFVACNHLRS 268
Query: 211 PQYFAESINSKEGFWGFPCAGIISYLFGMC--PVKEPIKLMGE 251
+Y+A SI + +GF G+PC+ + C +E MG
Sbjct: 269 YKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMGH 311
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 184 bits (467), Expect = 4e-56
Identities = 75/223 (33%), Positives = 98/223 (43%), Gaps = 26/223 (11%)
Query: 52 ISTEYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMH 111
+ FK + N V+W + Y + N+ VG VAQM+ LS +
Sbjct: 91 MCKNMFKVEEVNCICVDWKKG-SQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQ 149
Query: 112 LIGFSLGAHVAAYTSKYLRPYKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSA 171
LIG SLGAHVA L RITGLDP F + RLD DA FVDVIHT A
Sbjct: 150 LIGHSLGAHVAGEAGSRTP--GLGRITGLDPVEASFQGTPEEVRLDPTDADFVDVIHTDA 207
Query: 172 ------FVQGQYSRSGHVDFYMNGGIEQPGC---------------WNASNPFDCNHRRA 210
G + GH+DF+ NGG E PGC + CNH R+
Sbjct: 208 APLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDLDGIWEGTRDFVACNHLRS 267
Query: 211 PQYFAESINSKEGFWGFPCAGIISYLFGMCPV--KEPIKLMGE 251
+Y++ESI + +GF +PCA ++ C + MG
Sbjct: 268 YKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQMGH 310
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 30.5 bits (68), Expect = 0.26
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 55 EYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIG 114
+ Y +++ P + N E + + + + ++
Sbjct: 54 PLSTQLGYTPCWISPPPFMLND----TQVNTEYMVNAITALYAGS------GNNKLPVLT 103
Query: 115 FSLGAHVAAYTSKYL--RPYKLPRITGLDP 142
+S G VA + + K+ R+ P
Sbjct: 104 WSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 133
>d1c5ea_ b.85.2.1 (A:) Head decoration protein D (gpD, major
capsid protein D) {Bacteriophage lambda [TaxId: 10710]}
Length = 95
Score = 26.9 bits (59), Expect = 1.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 53 STEYFKRGDYNVWFVNWPE 71
+ ++K G + V WPE
Sbjct: 57 TLTFYKSGTFRYEDVLWPE 75
>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major
capsid protein D) {Bacteriophage P21 [TaxId: 10711]}
Length = 103
Score = 26.5 bits (58), Expect = 1.8
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 56 YFKRGDYNVWFVNWPE 71
Y+K G + ++WPE
Sbjct: 66 YYKSGTFATEAIHWPE 81
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter
vinelandii [TaxId: 354]}
Length = 135
Score = 27.0 bits (58), Expect = 1.9
Identities = 9/108 (8%), Positives = 24/108 (22%), Gaps = 1/108 (0%)
Query: 143 AMPMFMSRDR-DHRLDSEDAKFVDVIHTSAFVQGQYSRSGHVDFYMNGGIEQPGCWNASN 201
++P+ + RL + + VD+ + + +G + VD + P
Sbjct: 6 SLPLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPP 65
Query: 202 PFDCNHRRAPQYFAESINSKEGFWGFPCAGIISYLFGMCPVKEPIKLM 249
++ +
Sbjct: 66 REQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYL 113
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.1 bits (59), Expect = 2.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 56 YFKRGDYNVWFVNWPELCRGPCYV 79
Y +G Y +F P C Y
Sbjct: 130 YILKGGYKEFFPQHPNFCEPQDYR 153
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 26.8 bits (59), Expect = 4.0
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 61 DYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAH 120
+V + + R N+ V Q++ + K + +GFS G
Sbjct: 37 GIHVLSLEIGKTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGY----NAMGFSQGGQ 92
Query: 121 VAAYTSKYLRPYKLPRITGL 140
++ + + +
Sbjct: 93 FLRAVAQRCPSPPMVNLISV 112
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 26.9 bits (59), Expect = 4.1
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 72 LCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIGFSLGAHVAAYTSKYLRP 131
LCRG +V V + + +++++L+ + +G +AA TS+
Sbjct: 185 LCRGRAFVFDVLHEGCL-ITPPELLRQLTYIHKKCSNE------PVGPSIAALTSEERTR 237
Query: 132 YKLPRITGLDPAMPMFMSRDRDHRLDSEDAKFVDVIHTSAFV 173
+ +R+ LD E+ ++ I TS FV
Sbjct: 238 W--------------AKAREYLISLDPENLTLLEKIQTSLFV 265
>d1nuba3 g.68.1.1 (A:78-135) Domain of BM-40/SPARC/osteonectin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 24.5 bits (53), Expect = 4.8
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 317 SNTGKTFASMCEIASQAC 334
SN KTF S C + C
Sbjct: 19 SNDNKTFDSSCHFFATKC 36
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated
serine/threonine-protein kinase 3, MAST3 (KIAA0561)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.0 bits (55), Expect = 5.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 90 KCVAQMIKRLSKYIGDVEPDMHL 112
K AQM RL +++ P L
Sbjct: 2 KATAQMEGRLQEFLTAYAPGARL 24
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 26.3 bits (57), Expect = 5.9
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 13/88 (14%)
Query: 55 EYFKRGDYNVWFVNWPELCRGPCYVISVYNLEQVGKCVAQMIKRLSKYIGDVEPDMHLIG 114
+R V+ +L S EQ+ + V +++ + P ++LIG
Sbjct: 33 SALRRDGAQVYVTEVSQLDT------SEVRGEQLLQQVEEIVALSGQ------PKVNLIG 80
Query: 115 FSLGAHVAAYTSKYLRPYKLPRITGLDP 142
S G Y + +RP + T +
Sbjct: 81 HSHGGPTIRYVA-AVRPDLIASATSVGA 107
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
Length = 161
Score = 25.1 bits (54), Expect = 9.6
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 56 YFKRGDYNVWFVNWPELCRGPCYV 79
Y +G Y +F+ C P Y
Sbjct: 129 YVLKGGYKEFFMKCQSYCEPPSYR 152
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.138 0.442
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,322,651
Number of extensions: 61256
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 17
Length of query: 345
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,226,816
Effective search space: 317745344
Effective search space used: 317745344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)