BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2110
(622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 63/348 (18%)
Query: 132 VEFDGALDCISLAVTCAFNKRGTLLAVGCNDG----RIVLWDFLTRGIAKIISAHMHPEF 187
VE +LD S+ F+ G LA GCN R+ + R ++ +A+ PE
Sbjct: 55 VELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-LSDDSAANKDPEN 113
Query: 188 DGALDCISLAV---TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISW 244
S + + F+ G LA G D I +WD R I I+ H + S+ +
Sbjct: 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 173
Query: 245 SRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVL 304
+G K++S S D V IWD+ TG+C + V P + + A +
Sbjct: 174 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 305 VDTDGDHQIVPID---------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK 355
D++ + +D +DS S+V F R GQ VV+G
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVV--FTRDGQSVVSG----------------- 274
Query: 356 ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ-KLQDLVN 414
+ DR ++++N Q N P ++ + +
Sbjct: 275 -------------------------SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309
Query: 415 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELL 462
K + + EY+ +GS + L+ W+K GN + +L G + ++
Sbjct: 310 KDFVLSVATTQNDEYILSGSKDRGVLF-WDKKSGNPLLMLQGHRNSVI 356
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 37/267 (13%)
Query: 62 NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH 121
++ + DPE + + + CFS DG+++ G A + IW+ +V IL
Sbjct: 104 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG-AEDRLIRIWDIENRKIVMILQ 162
Query: 122 GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA 181
G + ++ +LD + G L G D + +WD T + +S
Sbjct: 163 GHEQDIY--------SLD---------YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 205
Query: 182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-------SA 234
DG ++AV+ G +A G D + +WD T + + + +
Sbjct: 206 E-----DG---VTTVAVSPG---DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254
Query: 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP-SPILKVQFHPRNDHMF 293
H V S+ ++R+G ++S S D +V +W++ + + P S +V + D +
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314
Query: 294 LVCPMRHAAVLVDTDGDHQIVPIDEDS 320
V ++ ++ D ++ D+ S
Sbjct: 315 SVATTQNDEYILSGSKDRGVLFWDKKS 341
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 69/185 (37%), Gaps = 16/185 (8%)
Query: 87 CC--FSGDGEYVCAGSARQHALYIWEKSVGNLV-KILHGTKGELLLDVVEFDGALDCISL 143
CC FS DGEY+ G + +Y S G+LV ++ + + + +
Sbjct: 68 CCVKFSNDGEYLATGCNKTTQVY--RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN 203
+ F+ G LA G D I +WD R I I+ H D SL +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ-------DIYSL----DYF 174
Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW 263
G L G D + +WD T + +S +G I + S D V +W
Sbjct: 175 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 264 DVLTG 268
D TG
Sbjct: 235 DSETG 239
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 19/169 (11%)
Query: 310 DHQIVPIDEDSDLS-----IVASFDRRGQHVVTGNSKGKVLVLSCPAL------ELKASF 358
DH +VP ++ ++ S + D + +L PAL EL S
Sbjct: 2 DHYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL 61
Query: 359 KASTTAIKSIEFARRGNCLLV--NTGDRLIRVYNHQEVLNAGKDG----DPEPIQKLQDL 412
T+ + ++F+ G L N ++ RV + V D DPE +
Sbjct: 62 D-HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120
Query: 413 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGEL 461
+ + CFS DG+++ G A + IW+ +V IL G + ++
Sbjct: 121 SSDLYIRSVCFSPDGKFLATG-AEDRLIRIWDIENRKIVMILQGHEQDI 168
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ A SA + + IW G K + G K L ++
Sbjct: 34 FSPNGEWLAASSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 37 NGEWLAASSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 84
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 85 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 126
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 175
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 55 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 95
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 144
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 58 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 105
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 106 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 147
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 196
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 197 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 53 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 93
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 142
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 56 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 103
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 104 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 145
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 194
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 195 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 37 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 77
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 126
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 43/240 (17%)
Query: 37 ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEY 95
+ G L ++ D+LI+++ DG E L ++ W S D
Sbjct: 38 SPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNL 85
Query: 96 VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL 155
+ + S + L IW+ S G +K L G + C FN + L
Sbjct: 86 LVSASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNL 127
Query: 156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND 215
+ G D + +WD T K + AH P FN+ G+L+ D
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYD 176
Query: 216 GRIVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
G +WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 39/309 (12%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 34 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH--QIVPIDEDSDLS 323
G+C + P+ V+F P N L + + L D + ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 324 IVASFD-RRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT- 381
I A+F G+ +V+G+ V + + E+ + T + S N +
Sbjct: 243 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 302
Query: 382 -GDRLIRVY 389
D+ I++Y
Sbjct: 303 ENDKTIKLY 311
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 37 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 84
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 85 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 126
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 175
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 37 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 77
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 126
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 40 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 87
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 88 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 129
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 178
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 31 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 71
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 120
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 34 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 81
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 82 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 123
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 172
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 36 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 76
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 125
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 39 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 86
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 87 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 128
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 177
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 32 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 72
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 121
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 35 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 82
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 83 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 124
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 173
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 30 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 70
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 119
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 33 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 80
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 81 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 122
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 171
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 31 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 71
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 120
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 34 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 81
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 82 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 123
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 172
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 27 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 67
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 116
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 43/240 (17%)
Query: 37 ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEY 95
+ G L ++ D+LI+++ DG E L ++ W S D
Sbjct: 28 SPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNL 75
Query: 96 VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL 155
+ + S + L IW+ S G +K L G + C FN + L
Sbjct: 76 LVSASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNL 117
Query: 156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND 215
+ G D + +WD T K + AH P FN+ G+L+ D
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYD 166
Query: 216 GRIVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
G +WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 167 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 48 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 88
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 137
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 225
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 51 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 98
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 99 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 140
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 189
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 190 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 37 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 77
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 126
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 40 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 87
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 88 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 129
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 178
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 34 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 37 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 84
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 85 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 126
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 175
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN + +WD G+C + Y
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 34 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 43/238 (18%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVC 97
G L ++ D+LI+++ DG E L ++ W S D +
Sbjct: 37 NGEWLASSSADKLIKIW-------GAYDGKFEKTISGHKLGISDVAW-----SSDSNLLV 84
Query: 98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
+ S + L IW+ S G +K L G + C FN + L+
Sbjct: 85 SASDDK-TLKIWDVSSGKCLKTLKGHSNYVFC-----------------CNFNPQSNLIV 126
Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
G D + +WD T K + AH P FN+ G+L+ DG
Sbjct: 127 SGSFDESVRIWDVKTGMCLKTLPAHSDP-----------VSAVHFNRDGSLIVSSSYDGL 175
Query: 218 IVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+WD + + + +I PV + +S NG I++A+ DN++ +WD G+C + Y
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
FS +GE++ + SA + + IW G K + G K L ++
Sbjct: 34 FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A++ LL +D + +WD + K + H + F C FN +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
L+ G D + +WD T K + AH PV ++ ++R+G I+S+S D IWD +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
G+C + P+ V+F P ++
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
F+ +++ D I +WD+ T + + H D D +F+ G L
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT----DSVQDI-------SFDHSGKL 164
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268
LA D I LWDF + + H H V S+S NG I+SAS D + +W+V TG
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Query: 269 ECEQKY 274
C + +
Sbjct: 225 YCVKTF 230
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
+F+ G LLA D I LWDF +G I + H H D + +S+ G
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDF--QGFECIRTMHGH---DHNVSSVSIM------PNGD 205
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
+ D I +W+ T K + H V + +++G I S S D V +W V T
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 268 GECEQKYR 275
EC+ + R
Sbjct: 266 KECKAELR 273
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 25/190 (13%)
Query: 89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA 148
F+G E+V Q I S V++ E ++ E ++CIS A +
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289
Query: 149 FN--------------KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI 194
++ K G L G D I +WD T + H D + +
Sbjct: 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-----DNWVRGV 344
Query: 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISA 254
F+ G + +D + +WD+ + K ++AH H V S+ + + +++
Sbjct: 345 ------LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398
Query: 255 STDNNVCIWD 264
S D V +W+
Sbjct: 399 SVDQTVKVWE 408
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 2/159 (1%)
Query: 232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH 291
+S H PV + + ++SAS D + +WD TG+ E+ + + ++ +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 292 MFLVCPMRHAAVLVDTDGDHQIVPID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP 350
+ C L D G I + D ++S V S G H+V+ + + +
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV-SIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 351 ALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVY 389
+F ++ + + G + + D+ +RV+
Sbjct: 223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 124/328 (37%), Gaps = 56/328 (17%)
Query: 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
CFS DG+ + + A + +++ GE LLD+ + + C C
Sbjct: 629 CFSQDGQRIASCGADK------------TLQVFKAETGEKLLDIKAHEDEVLC------C 670
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
AF+ + +A D ++ +WD T K++ H + E ++C C F +
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSAT---GKLV--HTYDEHSEQVNC------CHFTNKSN 719
Query: 208 --LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
LLA G ND + LWD + + H + V +S + + S S D + +WDV
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 266 LTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE-----DS 320
+ + L + P + + + C A DGD IV D
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA------DGDKIIVAAKNKVLLFDI 833
Query: 321 DLSIVASFDRRGQHVV------TGNSKGKVLVLSCPALEL--------KASFKASTTAIK 366
S + + G H + V+ LS +EL A + + +
Sbjct: 834 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 893
Query: 367 SIEFARRGNCLLVNTGDRLIRVYNHQEV 394
+ F+ G+ L + D+ IRV+ ++V
Sbjct: 894 GVMFSPDGSSFLTASDDQTIRVWETKKV 921
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 121/306 (39%), Gaps = 21/306 (6%)
Query: 87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
C FS D E + + SA L +W+ N K ++ + L + D D +
Sbjct: 756 CRFSPDDELLASCSA-DGTLRLWDVRSANERKSINVKRFFLSSE----DPPEDVEVIVKC 810
Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
C+++ G + V + +++L+D T G+ I H S C F+
Sbjct: 811 CSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHH----------STIQYCDFSPYD 859
Query: 207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL 266
L + + + LW+ +R H+ V + +S +G ++AS D + +W+
Sbjct: 860 HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET- 918
Query: 267 TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVA 326
C+ + V F + V +R ++ G +P + S +
Sbjct: 919 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 978
Query: 327 SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLI 386
++V G+ G + ++ P + +S A++ I+F G L+ ++ D +I
Sbjct: 979 HL----EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVI 1034
Query: 387 RVYNHQ 392
+V+N Q
Sbjct: 1035 QVWNWQ 1040
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 88/240 (36%), Gaps = 48/240 (20%)
Query: 87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
C FS D Y+ SA + + IW+ + G LV E ++C
Sbjct: 670 CAFSSDDSYIATCSADK-KVKIWDSATGKLVHTYD-----------EHSEQVNC------ 711
Query: 147 CAFNKRGT--LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
C F + LLA G ND + LWD + + H + C F+
Sbjct: 712 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS-----------VNHCRFSP 760
Query: 205 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCS-------------ISWSRNGYKI 251
LLA DG + LWD + K I+ + S SWS +G KI
Sbjct: 761 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 820
Query: 252 ISASTDNNVCIWDVLTGE--CEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG 309
I A+ N V ++D+ T E S I F P DH+ ++ ++ L + D
Sbjct: 821 IVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDS 878
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
F G L D I +W++ T G + AH D L S ++ +F
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDSRLLSWSF------ 1070
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW 263
DG + +W+ +T I + + H V S + S + K S S D IW
Sbjct: 1071 ------DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 202 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC 261
F G L D I +W++ T G + AH V ++ +++S S D V
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVK 1075
Query: 262 IWDVLTGECEQKY 274
+W+V+TG E+ +
Sbjct: 1076 VWNVITGRIERDF 1088
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 124/328 (37%), Gaps = 56/328 (17%)
Query: 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
CFS DG+ + + A + +++ GE LLD+ + + C C
Sbjct: 622 CFSQDGQRIASCGADK------------TLQVFKAETGEKLLDIKAHEDEVLC------C 663
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
AF+ + +A D ++ +WD T K++ H + E ++C C F +
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSAT---GKLV--HTYDEHSEQVNC------CHFTNKSN 712
Query: 208 --LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
LLA G ND + LWD + + H + V +S + + S S D + +WDV
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 266 LTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE-----DS 320
+ + L + P + + + C A DGD IV D
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA------DGDKIIVAAKNKVLLFDI 826
Query: 321 DLSIVASFDRRGQHVV------TGNSKGKVLVLSCPALEL--------KASFKASTTAIK 366
S + + G H + V+ LS +EL A + + +
Sbjct: 827 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886
Query: 367 SIEFARRGNCLLVNTGDRLIRVYNHQEV 394
+ F+ G+ L + D+ IRV+ ++V
Sbjct: 887 GVMFSPDGSSFLTASDDQTIRVWETKKV 914
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 121/306 (39%), Gaps = 21/306 (6%)
Query: 87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
C FS D E + + SA L +W+ N K ++ + L + D D +
Sbjct: 749 CRFSPDDELLASCSA-DGTLRLWDVRSANERKSINVKRFFLSSE----DPPEDVEVIVKC 803
Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
C+++ G + V + +++L+D T G+ I H S C F+
Sbjct: 804 CSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHH----------STIQYCDFSPYD 852
Query: 207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL 266
L + + + LW+ +R H+ V + +S +G ++AS D + +W+
Sbjct: 853 HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET- 911
Query: 267 TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVA 326
C+ + V F + V +R ++ G +P + S +
Sbjct: 912 KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971
Query: 327 SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLI 386
++V G+ G + ++ P + +S A++ I+F G L+ ++ D +I
Sbjct: 972 HL----EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVI 1027
Query: 387 RVYNHQ 392
+V+N Q
Sbjct: 1028 QVWNWQ 1033
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 88/240 (36%), Gaps = 48/240 (20%)
Query: 87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
C FS D Y+ SA + + IW+ + G LV E ++C
Sbjct: 663 CAFSSDDSYIATCSADK-KVKIWDSATGKLVHTYD-----------EHSEQVNC------ 704
Query: 147 CAFNKRGT--LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
C F + LLA G ND + LWD + + H + C F+
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS-----------VNHCRFSP 753
Query: 205 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCS-------------ISWSRNGYKI 251
LLA DG + LWD + K I+ + S SWS +G KI
Sbjct: 754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813
Query: 252 ISASTDNNVCIWDVLTGE--CEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG 309
I A+ N V ++D+ T E S I F P DH+ ++ ++ L + D
Sbjct: 814 IVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDS 871
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
F G L D I +W++ T G + AH D L S ++ +F
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDSRLLSWSF------ 1063
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW 263
DG + +W+ +T I + + H V S + S + K S S D IW
Sbjct: 1064 ------DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 202 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC 261
F G L D I +W++ T G + AH V ++ +++S S D V
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVK 1068
Query: 262 IWDVLTGECEQKY 274
+W+V+TG E+ +
Sbjct: 1069 VWNVITGRIERDF 1081
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 202 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC 261
+NK G LL D +W L + H + SI ++ S D ++
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 262 IWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVC------------------PMRHAAV 303
+WDV G+C ++ P P+ +V+F P ++ + H
Sbjct: 100 LWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT 159
Query: 304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKV 344
V + H+I+ E D + VA + +G++++ G+ GK+
Sbjct: 160 KVSEEPIHKII-THEGLDAATVAGWSTKGKYIIAGHKDGKI 199
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 24/212 (11%)
Query: 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
CF+ +Y GSA +++ +W+ S G V K + + VEF C
Sbjct: 84 CFT---KYCVTGSA-DYSIKLWDVSNGQCVATW---KSPVPVKRVEFS----------PC 126
Query: 148 AFNKRGTLLAVGCNDGRIVLW----DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN 203
L V N G I ++ D T + K+ +H + + A ++
Sbjct: 127 GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII--THEGLDAATVAGWS 184
Query: 204 KRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCI 262
+G + G DG+I +D I H + + +S + I++S D N +
Sbjct: 185 TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244
Query: 263 WDVLTGECEQKYRFPSPILKVQFHPRNDHMFL 294
DV T + +KY P+ P + + L
Sbjct: 245 VDVSTLQVLKKYETDCPLNTAVITPLKEFIIL 276
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 178 IISAHMHP-EFDGALDCISLAVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH 235
II+ HP + + VTC A++ G + G +G + LW+ T + +++ H
Sbjct: 90 IIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFH 148
Query: 236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF 276
P+ S+ W+++G IIS +N +W+V++G Q +
Sbjct: 149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL 189
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 202 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC 261
FN LL +DG + +W H + S SW + K+IS S D +V
Sbjct: 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVR 313
Query: 262 IWDV 265
+W +
Sbjct: 314 LWSL 317
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 107/529 (20%), Positives = 204/529 (38%), Gaps = 113/529 (21%)
Query: 1 SDLSIVASFDRRGQ--HVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQ 58
SD V ++R GQ +TG+S V P G + + D+ ++++N
Sbjct: 117 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-------DGQTIASASDDKTVKLWN-- 167
Query: 59 EVLNAGKDGDPEPIQKLQDLV--NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL 116
++G Q LQ L + ++W FS DG+ + + S + + +W +
Sbjct: 168 ------RNG-----QLLQTLTGHSSSVWG-VAFSPDGQTIASASDDK-TVKLWNR----- 209
Query: 117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA 176
G+LL + ++ + AF+ G +A +D + LW+ + +
Sbjct: 210 -------NGQLLQTLTGHSSSVRGV------AFSPDGQTIASASDDKTVKLWNRNGQ-LL 255
Query: 177 KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 236
+ ++ H S AF G +A +D + LW+ + + + ++ H
Sbjct: 256 QTLTGHS-----------SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS 303
Query: 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHP-------RN 289
V +++S +G I SAS D V +W+ + S + V F P +
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 290 DHMFLVCPMRHAAVLVDTDGDHQIV----------PIDEDSDLSIVASFDRRGQ--HVVT 337
D + R+ +L G V I SD V ++R GQ +T
Sbjct: 364 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 338 GNSKG-------------------KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLL 378
G+S K + L +L + +++++ + F+ G +
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 483
Query: 379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQ 437
+ D+ ++++N ++G Q LQ L + + + FS DG+ + + S +
Sbjct: 484 SASDDKTVKLWN--------RNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 530
Query: 438 HALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS-GVVSLW 485
+ +W ++ G L++ L G + V + P IAS SS V LW
Sbjct: 531 -TVKLWNRN-GQLLQTLTGHSSS-VWGVAFSPDGQTIASASSDKTVKLW 576
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 132/312 (42%), Gaps = 25/312 (8%)
Query: 181 AHMHPEFDGALDCISLAVT-CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV 239
+HM + L+ S +V AF+ G +A +D + LW+ + + + ++ H V
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSV 60
Query: 240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR 299
+++S +G I SAS D V +W+ + S + V F P D +
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASD 118
Query: 300 HAAV-LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF 358
V L + +G S + VA F GQ + + S K + L +L +
Sbjct: 119 DKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASA-SDDKTVKLWNRNGQLLQTL 176
Query: 359 KASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTM 417
++++ + F+ G + + D+ ++++N ++G Q LQ L + +
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--------RNG-----QLLQTLTGHSSS 223
Query: 418 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI 477
+ FS DG+ + + S + + +W ++ G L++ L G + V + P IAS
Sbjct: 224 VRGVAFSPDGQTIASASDDK-TVKLWNRN-GQLLQTLTGHSSS-VNGVAFRPDGQTIASA 280
Query: 478 S-SGVVSLWAQN 488
S V LW +N
Sbjct: 281 SDDKTVKLWNRN 292
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 119/297 (40%), Gaps = 74/297 (24%)
Query: 1 SDLSIVASFDRRGQHV--VTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQ 58
SD V ++R GQH+ +TG+S V P G + + D+ ++++N
Sbjct: 322 SDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP-------DGQTIASASDDKTVKLWN-- 372
Query: 59 EVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV 117
++G Q LQ L + + + FS DG+ + + S + + +W ++ G L+
Sbjct: 373 ------RNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN-GQLL 419
Query: 118 KILHG------------------------------TKGELLLDVVEFDGALDCISLAVTC 147
+ L G G+LL + ++ +
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV------ 473
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
AF+ G +A +D + LW+ + + + ++ H S AF+ G
Sbjct: 474 AFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS-----------SSVRGVAFSPDGQ 521
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
+A +D + LW+ + + + ++ H V +++S +G I SAS+D V +W+
Sbjct: 522 TIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 25/260 (9%)
Query: 138 LDCIS---LAVTCAFNKRGTLLAVGCNDGRIVLWDFLT---RGIAKIISAHMHPEFDGAL 191
LDC++ +C G L VG + +WD R A++ S+ A
Sbjct: 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS--------AP 142
Query: 192 DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKI 251
C +LA++ + C+DG I +WD + + + H I S +G K+
Sbjct: 143 ACYALAIS----PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 252 ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH 311
+ DN V WD+ G Q++ F S I + + P + + + + VL D
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
Query: 312 QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS--TTAIKSIE 369
+ + E LS+ F G+ V S GK +L+ AS S ++++ S +
Sbjct: 259 YQLHLHESCVLSL--KFAYCGKWFV---STGKDNLLNAWRTPYGASIFQSKESSSVLSCD 313
Query: 370 FARRGNCLLVNTGDRLIRVY 389
+ ++ +GD+ VY
Sbjct: 314 ISVDDKYIVTGSGDKKATVY 333
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 31/167 (18%)
Query: 105 ALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG 163
++Y+W S G+++++L + GE + V A+ K G LAVG +
Sbjct: 137 SVYLWSASSGDILQLLQMEQPGEYISSV----------------AWIKEGNYLAVGTSSA 180
Query: 164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223
+ LWD + + +++H A + + +L+ G G I D
Sbjct: 181 EVQLWDVQQQKRLRNMTSHS-------------ARVGSLSWNSYILSSGSRSGHIHHHDV 227
Query: 224 -LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE 269
+ +S H VC + W+ +G + S DN V +W GE
Sbjct: 228 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 31/167 (18%)
Query: 105 ALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG 163
++Y+W S G+++++L + GE + V A+ K G LAVG +
Sbjct: 126 SVYLWSASSGDILQLLQMEQPGEYISSV----------------AWIKEGNYLAVGTSSA 169
Query: 164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223
+ LWD + + +++H A + + +L+ G G I D
Sbjct: 170 EVQLWDVQQQKRLRNMTSHS-------------ARVGSLSWNSYILSSGSRSGHIHHHDV 216
Query: 224 -LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE 269
+ +S H VC + W+ +G + S DN V +W GE
Sbjct: 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 114/305 (37%), Gaps = 51/305 (16%)
Query: 101 ARQHALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159
A +++Y+W S G+++++L + GE + V A+ K G LAVG
Sbjct: 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSV----------------AWIKEGNYLAVG 85
Query: 160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIV 219
+ + LWD + + +++H A + + +L+ G G I
Sbjct: 86 TSSAEVQLWDVQQQKRLRNMTSHS-------------ARVGSLSWNSYILSSGSRSGHIH 132
Query: 220 LWDF-LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS 278
D + +S H VC + W+ +G + S DN V +W GE
Sbjct: 133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV----- 187
Query: 279 PILKVQFHPRNDHMFLVCPMRHAAVLVDTDG--DHQI-----------VPIDEDSDL-SI 324
P+ H CP + + VL G D I +D S + SI
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI 246
Query: 325 VASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR 384
+ S + G ++ ++++ P + A K T+ + S+ + G + D
Sbjct: 247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 306
Query: 385 LIRVY 389
+R++
Sbjct: 307 TLRLW 311
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 31/183 (16%)
Query: 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
CFS DG+ + + A + +++ GE LL++ + + C C
Sbjct: 628 CFSEDGQRIASCGADK------------TLQVFKAETGEKLLEIKAHEDEVLC------C 669
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG- 206
AF+ +A D ++ +W+ +T + H + E ++C C F
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELV-----HTYDEHSEQVNC------CHFTNSSH 718
Query: 207 -TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
LLA G +D + LWD + + H + V +S + + S S D + +WD
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 266 LTG 268
+
Sbjct: 779 TSA 781
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/307 (19%), Positives = 117/307 (38%), Gaps = 23/307 (7%)
Query: 87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
C FS D + + + SA L +W+ + N K ++ + L L+ D D +
Sbjct: 755 CRFSPDDKLLASCSA-DGTLKLWDATSANERKSINVKQFFLNLE----DPQEDMEVIVKC 809
Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
C+++ G + V + +I L+D T G+ I H S C F+ +
Sbjct: 810 CSWSADGARIMVAAKN-KIFLFDIHTSGLLGEIHTGHH----------STIQYCDFSPQN 858
Query: 207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL 266
L V + + LW+ +R H+ V + +S +G +++S D + +W+
Sbjct: 859 HLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET- 917
Query: 267 TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSI-V 325
C+ + V F + V +R ++ G ID ++ +
Sbjct: 918 KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQ-----IDYLTEAQVSC 972
Query: 326 ASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRL 385
Q++ G+ G + +L + S + I+F L+ ++ D
Sbjct: 973 CCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAE 1032
Query: 386 IRVYNHQ 392
I+V+N Q
Sbjct: 1033 IQVWNWQ 1039
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 201 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI--------ISAHMHPVCSISWSRNGYKII 252
AF+ TLLA G ++G I +W+ + + + H V + +S +G +I
Sbjct: 1140 AFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI 1199
Query: 253 SASTDNNVCIWDVLTGECEQKY 274
SA + W+V+TGE Q +
Sbjct: 1200 SAG--GYIKWWNVVTGESSQTF 1219
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 16/153 (10%)
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLW----DFLTRGIAKIISAHMHPEFDGALDCISLAVTC 200
+ CA+ G +A G D + ++ D AK S MH + A C
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA---------C 160
Query: 201 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC--SISWSRNGYKIISASTDN 258
+F + DG LWD + + + H V ++ S G +S D
Sbjct: 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 259 NVCIWDVLTGECEQKYR-FPSPILKVQFHPRND 290
+WD+ +G+C Q + S + V+++P D
Sbjct: 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/303 (19%), Positives = 118/303 (38%), Gaps = 53/303 (17%)
Query: 161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL 220
DG++++WD T + E + C + + CA+ G +A G D + +
Sbjct: 84 QDGKVIVWDSFT----------TNKEHAVTMPC-TWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 221 WDFL------TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
+ K ++ H + + + S++ + +I++AS D +WDV +G+ Q +
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 275 R-FPSPILKVQFHP-RNDHMFLVCPMRHAAVLVDTDGDHQIVPID-EDSDLSIVASFDRR 331
+ +L + P + F+ A++ D + + +SD++ V +
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-S 251
Query: 332 GQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSI-------EFARRGNCLLVNTGDR 384
G +G+ +C +L+A + + + +SI +F+ G L D
Sbjct: 252 GDAFASGSDDA-----TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY 306
Query: 385 LIRVYNHQEVLNAGK----DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL 440
I V+ +VL + G + L+ S DG C+GS H L
Sbjct: 307 TINVW---DVLKGSRVSILFGHENRVSTLR------------VSPDGTAFCSGS-WDHTL 350
Query: 441 YIW 443
+W
Sbjct: 351 RVW 353
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP-SPILKVQFHP 287
+ + H + V + W ++ +I+S+S D V +WD T E P + ++ + P
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 202 FNKRGTLLAVGCNDGRIVLW---DFLTRGIAKIIS----AHMHPVCSISWSRNGYKIISA 254
+N G+L A DG IVL+ D G+ + S AH V ++WS +G KI SA
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 255 STDNNVCIWDVLTGECEQ 272
S D + IW+V T + E+
Sbjct: 258 SADKTIKIWNVATLKVEK 275
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 99/261 (37%), Gaps = 22/261 (8%)
Query: 230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP---SPILKVQFH 286
+I + H H S +GY S NV IWD K P P+ + +
Sbjct: 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 112
Query: 287 PRNDHMFLVCPMRHA---AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGK 343
+ + V R L DT G + ++ V R +++G+
Sbjct: 113 SESKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171
Query: 344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDP 403
V + P + K++F T + S+ + G+ GD I +YN G DG
Sbjct: 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN-------GVDGTK 224
Query: 404 EPI---QKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GTKG 459
+ L+++ + +S DG + + SA + + IW + + K + GT+
Sbjct: 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIWNVATLKVEKTIPVGTRI 283
Query: 460 E-LLLDVVWHPVRPIIASISS 479
E L ++W + + SIS+
Sbjct: 284 EDQQLGIIW--TKQALVSISA 302
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 209 LAVGCNDGRIVLWDFLTRGIAKII--SAH-MHPVCSISWSRNGYKIISASTDNNVCIWDV 265
LA G D +++W+ II AH M V S+ W N I+SA D+N+ W+V
Sbjct: 551 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 609
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 141 ISLAVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVT 199
IS +C A + +AVG D ++ ++ ++++ + +HP + +
Sbjct: 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI-VHP---------AEITS 496
Query: 200 CAFNKRGTLLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPVCSISWSRNGYKIISAST 256
AF+ G L +++ + + H V +SWS + ++ + S
Sbjct: 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556
Query: 257 DNNVCIWDV 265
DN+V +W++
Sbjct: 557 DNSVIVWNM 565
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLA 197
S +TCA+ G +A G D +++ TR +++ ++ H G L C
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSC---- 148
Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
C F ++ D LWD T + H V S+S + + +S + D
Sbjct: 149 --CRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 258 NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316
+ +WDV G C Q + S I + F P N + F L D D +++
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 317 DEDSDLSIVA--SFDRRGQHVVTG 338
D+ + + SF + G+ ++ G
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAG 288
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
F G A G +D L+D R ++++ + H + +S F+K G L
Sbjct: 234 FFPNGNAFATGSDDATCRLFDL--RADQELMT-YSHDNIICGITSVS------FSKSGRL 284
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
L G +D +WD L A +++ H + V + + +G + + S D+ + IW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLA 197
S +TCA+ G +A G D +++ TR +++ ++ H G L C
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSC---- 148
Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
C F ++ D LWD T + H V S+S + + +S + D
Sbjct: 149 --CRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 258 NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316
+ +WDV G C Q + S I + F P N + F L D D +++
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 317 DEDSDLSIVA--SFDRRGQHVVTG 338
D+ + + SF + G+ ++ G
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAG 288
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
F G A G +D L+D R ++++ + H + +S F+K G L
Sbjct: 234 FFPNGNAFATGSDDATCRLFDL--RADQELMT-YSHDNIICGITSVS------FSKSGRL 284
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
L G +D +WD L A +++ H + V + + +G + + S D+ + IW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLA 197
S +TCA+ G +A G D +++ TR +++ ++ H G L C
Sbjct: 109 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSC---- 159
Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
C F ++ D LWD T + H V S+S + + +S + D
Sbjct: 160 --CRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 216
Query: 258 NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316
+ +WDV G C Q + S I + F P N + F L D D +++
Sbjct: 217 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 275
Query: 317 DEDSDLSIVA--SFDRRGQHVVTG 338
D+ + + SF + G+ ++ G
Sbjct: 276 SHDNIICGITSVSFSKSGRLLLAG 299
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
F G A G +D L+D R ++++ + H + +S F+K G L
Sbjct: 245 FFPNGNAFATGSDDATCRLFDL--RADQELMT-YSHDNIICGITSVS------FSKSGRL 295
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
L G +D +WD L A +++ H + V + + +G + + S D+ + IW+
Sbjct: 296 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLA 197
S +TCA+ G +A G D +++ TR +++ ++ H G L C
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSC---- 148
Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
C F ++ D LWD T + H V S+S + + +S + D
Sbjct: 149 --CRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 258 NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316
+ +WDV G C Q + S I + F P N + F L D D +++
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 317 DEDSDLSIVA--SFDRRGQHVVTG 338
D+ + + SF + G+ ++ G
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAG 288
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
F G A G +D L+D R ++++ + H + +S F+K G L
Sbjct: 234 FFPNGNAFATGSDDATCRLFDL--RADQELMT-YSHDNIICGITSVS------FSKSGRL 284
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
L G +D +WD L A +++ H + V + + +G + + S D+ + IW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLA 197
S +TCA+ G +A G D +++ TR +++ ++ H G L C
Sbjct: 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSC---- 148
Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
C F ++ D LWD T + H V S+S + + +S + D
Sbjct: 149 --CRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 258 NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316
+ +WDV G C Q + S I + F P N + F L D D +++
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 317 DEDSDLSIVA--SFDRRGQHVVTG 338
D+ + + SF + G+ ++ G
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAG 288
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
F G A G +D L+D R ++++ + H + +S F+K G L
Sbjct: 234 FFPNGNAFATGSDDATCRLFDL--RADQELMT-YSHDNIICGITSVS------FSKSGRL 284
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
L G +D +WD L A +++ H + V + + +G + + S D+ + IW+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS 243
+P F G L +A + G ++ G D +++WD I+S H + S
Sbjct: 259 NPYFVGVLRG-HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 244 WSRNGYKIISASTDNNVCIWDVLTGE 269
+ + ISAS D + IWD+ GE
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGE 343
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 VGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC 270
G +D I ++D + + +S H V ++ ++ G ++S STD V +WD+ G C
Sbjct: 137 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCC 195
Query: 271 EQKY 274
+
Sbjct: 196 THVF 199
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 41/178 (23%)
Query: 116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI 175
++++ + LL + DG + + A G +L G D + +WD I
Sbjct: 143 MIRVYDSINKKFLLQLSGHDGGVWALKYA-------HGGILVSGSTDRTVRVWD-----I 190
Query: 176 AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-------- 227
K H+ + + C+ + K + G D + +W
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEY----KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
Query: 228 ---------------IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC 270
++ HM V ++S +G ++S S DN + +WDV +C
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKC 302
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 29/177 (16%)
Query: 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
+S DG+Y+ +G A + I++ + G L+ L G A+ SL
Sbjct: 171 AYSPDGKYLASG-AIDGIINIFDIATGKLLHTLEGH-------------AMPIRSLT--- 213
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
F+ LL +DG I ++D +A +S H S + AF T
Sbjct: 214 -FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA-----------SWVLNVAFCPDDT 261
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
+D + +WD TR H V + ++ NG KI+S D + I+D
Sbjct: 262 HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
++ A++ G LA G DG I ++D T + + H P + F+
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP-----------IRSLTFSP 216
Query: 205 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
LL +DG I ++D +A +S H V ++++ + +S+S+D +V +WD
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 265 VLTGECEQKY 274
V T C +
Sbjct: 277 VGTRTCVHTF 286
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW 221
D I LWD K I A G +D A T AF+ LA G + G++ ++
Sbjct: 101 DAHIRLWDLENGKQIKSIDA-------GPVD----AWTLAFSPDSQYLATGTHVGKVNIF 149
Query: 222 DFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPI 280
+ + + SI++S +G + S + D + I+D+ TG+ PI
Sbjct: 150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209
Query: 281 LKVQFHP 287
+ F P
Sbjct: 210 RSLTFSP 216
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 155 LLAVGCNDGRIVLW----DFLTRGIA-KIISAHMHPEFDGALDCISLAVTCAFNKRGTLL 209
++ D I+LW D G+A + ++ H H + G
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-----------FVEDVVLSSDGQFA 445
Query: 210 AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE 269
G DG + LWD + H V S+++S + +I+SAS D + +W+ L GE
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GE 504
Query: 270 CE 271
C+
Sbjct: 505 CK 506
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 30/260 (11%)
Query: 208 LLAVGCNDGRIVLW----DFLTRGIA-KIISAHMHPVCSISWSRNGYKIISASTDNNVCI 262
++ D I+LW D G+A + ++ H H V + S +G +S S D + +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 263 WDVLTGECEQKY-RFPSPILKVQFHPRNDHMFLVCPMRHAAV-LVDTDGDHQIVPIDEDS 320
WD+ G +++ +L V F N +V R + L +T G+ + I E
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ--IVSASRDRTIKLWNTLGECKYT-ISEGG 513
Query: 321 D-----LSIVASFDRRGQHVVTGNSKGK-VLVLSCPALELKASFKASTTAIKSIEFARRG 374
+ +S V Q + S K V V + +L+++ T + ++ + G
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 375 NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS 434
+ D ++ +++ E GK KL L ++ CFS + ++CA
Sbjct: 574 SLCASGGKDGVVLLWDLAE----GK--------KLYSLEANSVIHALCFSPNRYWLCA-- 619
Query: 435 ARQHALYIWEKSVGNLVKIL 454
A +H + IW+ ++V+ L
Sbjct: 620 ATEHGIKIWDLESKSIVEDL 639
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 32/139 (23%)
Query: 146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR 205
T A + G+L A G DG ++LWD L G K+ S L+ S+ F+
Sbjct: 566 TVAVSPDGSLCASGGKDGVVLLWD-LAEG-KKLYS----------LEANSVIHALCFSPN 613
Query: 206 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH----------PVC---------SISWSR 246
L G I +WD ++ I + + + P S++WS
Sbjct: 614 RYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672
Query: 247 NGYKIISASTDNNVCIWDV 265
+G + S TD + +W +
Sbjct: 673 DGSTLFSGYTDGVIRVWGI 691
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL-AVTCAFN 203
V A K GT+LA DG++++W G I+ H A+ S+ +V A +
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWK-EENGRWSQIAVH-------AVHSASVNSVQWAPH 110
Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAK--IISAHMHPVCSISW-------------SRNG 248
+ G LL V +DG++ + +F G II AH V S SW ++
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170
Query: 249 YKIISASTDNNVCIW 263
K ++ DN V IW
Sbjct: 171 RKFVTGGADNLVKIW 185
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS 243
+P F G L +V + G ++ G D +++WD I+S H + S
Sbjct: 259 NPYFVGVLRGHXASVRTV-SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI 317
Query: 244 WSRNGYKIISASTDNNVCIWDVLTGE 269
+ + ISAS D + IWD+ GE
Sbjct: 318 YDHERKRCISASXDTTIRIWDLENGE 343
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 VGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC 270
G +D I ++D + + +S H V ++ ++ G ++S STD V +WD+ G C
Sbjct: 137 TGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCC 195
Query: 271 EQKY 274
+
Sbjct: 196 THVF 199
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL-AVTCAFN 203
V A K GT+LA DG++++W G I+ H A+ S+ +V A +
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWK-EENGRWSQIAVH-------AVHSASVNSVQWAPH 112
Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAK--IISAHMHPVCSISW-------------SRNG 248
+ G LL V +DG++ + +F G II AH V S SW ++
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172
Query: 249 YKIISASTDNNVCIW 263
K ++ DN V IW
Sbjct: 173 RKFVTGGADNLVKIW 187
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL-AVTCAFN 203
V A K GT+LA DG++++W G I+ H A+ S+ +V A +
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWK-EENGRWSQIAVH-------AVHSASVNSVQWAPH 110
Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAK--IISAHMHPVCSISW-------------SRNG 248
+ G LL V +DG++ + +F G II AH V S SW ++
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170
Query: 249 YKIISASTDNNVCIW 263
K ++ DN V IW
Sbjct: 171 RKFVTGGADNLVKIW 185
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 44/197 (22%)
Query: 92 DGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK 151
D +Y+ + S + +W S V+ L+G K + C
Sbjct: 265 DDKYIVSASG-DRTIKVWNTSTCEFVRTLNGHKR------------------GIAC-LQY 304
Query: 152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAV 211
R L+ G +D I LWD +++ H + + CI NKR +
Sbjct: 305 RDRLVVSGSSDNTIRLWDIECGACLRVLEGH-----EELVRCIRFD-----NKR---IVS 351
Query: 212 GCNDGRIVLWDFLT----RGIA-----KIISAHMHPVCSISWSRNGYKIISASTDNNVCI 262
G DG+I +WD + R A + + H V + + + ++I+S+S D+ + I
Sbjct: 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409
Query: 263 WDVLTGECEQKYRFPSP 279
WD L Q SP
Sbjct: 410 WDFLNDPAAQAEPPRSP 426
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 15/184 (8%)
Query: 212 GCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE 271
G D I +WD T +I++ H V + + II+ S+D+ V +WDV TGE
Sbjct: 149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTGEML 206
Query: 272 QKY-RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVD----TDGDHQIVPIDEDSDLSIVA 326
+L ++F N+ M + C + + D TD + V + + +++V
Sbjct: 207 NTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV- 262
Query: 327 SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLI 386
FD +++V+ + + V + E + I +++ R ++ + D I
Sbjct: 263 DFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI 318
Query: 387 RVYN 390
R+++
Sbjct: 319 RLWD 322
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 199 TCAFNKRGTLLAVGCNDGRIVLW-------DFLTRGIAKIISAHMHPVCSISWSRNGYKI 251
+ A+ +LLA G D + +W + II H + V ++WS +GY +
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 252 ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH 311
+ S D +V IW+ T E ++Y S + Q H ++ + P A+L + D
Sbjct: 123 ATCSRDKSVWIWE--TDESGEEYECISVL---QEHSQDVKHVIWHPSE--ALLASSSYDD 175
Query: 312 QI-VPIDEDSDLSIVA 326
+ + D D D VA
Sbjct: 176 TVRIWKDYDDDWECVA 191
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 325 VASFDRRGQHVVTGNSKGKVLVLSCPALELKA----SFKASTTAIKSIEFARRGNCLLVN 380
+ SFD + TG++ K+ ++S + A AI+S+ + + L
Sbjct: 17 IWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76
Query: 381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL 440
+ D + ++ +E +A + + + + ++ N+ K +S DG Y+ A +R ++
Sbjct: 77 SFDSTVSIWAKEE--SADRTFEMDLLAIIEGHENEV--KGVAWSNDGYYL-ATCSRDKSV 131
Query: 441 YIWEKSVG----NLVKILHGTKGELLLDVVWHPVRPIIASIS 478
+IWE + +L + + V+WHP ++AS S
Sbjct: 132 WIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEALLASSS 172
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 48/240 (20%)
Query: 39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA 98
R N ++ + DR ++V+N E + + L T +C + + V +
Sbjct: 168 RDNIIISGSTDRTLKVWN------------AETGECIHTLYGHTSTVRCMHLHE-KRVVS 214
Query: 99 GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV 158
GS R L +W+ G + +L G + V++DG +
Sbjct: 215 GS-RDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRR-----------------VVS 254
Query: 159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRI 218
G D + +WD T + H + + D G + G D I
Sbjct: 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-------------GIHVVSGSLDTSI 301
Query: 219 VLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS 278
+WD T ++ H + N ++S + D+ V IWD+ TG+C Q + P+
Sbjct: 302 RVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 38/185 (20%)
Query: 88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
C DG V +G A + +W+ + L G + ++FDG + +S
Sbjct: 244 CVQYDGRRVVSG-AYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDG-IHVVS----- 294
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
G D I +WD T ++ H ++T +
Sbjct: 295 -----------GSLDTSIRVWDVETGNCIHTLTGHQ-------------SLTSGMELKDN 330
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISA---HMHPVCSISWSRNGYKIISASTDNNVCIWD 264
+L G D + +WD T + + H V + +++N +I++S D V +WD
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF--VITSSDDGTVKLWD 388
Query: 265 VLTGE 269
+ TGE
Sbjct: 389 LKTGE 393
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 44/221 (19%)
Query: 248 GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDT 307
G +I+S S DN + +W +TG+C + + V
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT----------------------GGVWSSQ 166
Query: 308 DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKS 367
D+ I+ D L + + H + G++ + C L K S A
Sbjct: 167 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTS----TVRCMHLHEKRVVSGSRDATLR 222
Query: 368 IEFARRGNCLLVNTGD----RLIRVYNHQEVLNAGKD-----GDPEP---IQKLQDLVNK 415
+ G CL V G R ++ Y+ + V++ D DPE + LQ N+
Sbjct: 223 VWDIETGQCLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281
Query: 416 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG 456
DG +V +GS ++ +W+ GN + L G
Sbjct: 282 VY----SLQFDGIHVVSGSL-DTSIRVWDVETGNCIHTLTG 317
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 188 DGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWS 245
D ++ C+S + G L G + W+ G I K H PV + WS
Sbjct: 39 DDSIGCLSFSPPTL---PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS 95
Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQF 285
+G K+ +AS D +WD+ + + Q + +P+ + +
Sbjct: 96 DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHW 135
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS-RNGYKIISASTDNNVCIWDV 265
L+AVG ++ L D + + I+ H + ++SWS R Y + +AS D+ V +WDV
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN 214
L+AVG ++ L D + + I+ H LAV+ + + +LA
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQE---------ILAVSWS-PRYDYILATASA 207
Query: 215 DGRIVLWDFL----------------TRGIAKIISAHMHPVCSISWSRNGYKIISASTDN 258
D R+ LWD ++ + +AH V + ++ +G +++ TDN
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267
Query: 259 NVCIWDVLTGE 269
+ +W+ GE
Sbjct: 268 RMRLWNSSNGE 278
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL-AVTCAFN 203
V A K GT+LA DG++++W G I+ H A+ S+ +V A +
Sbjct: 59 VDWAHPKFGTILASCSYDGKVMIWK-EENGRWSQIAVH-------AVHSASVNSVQWAPH 110
Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAK--IISAHMHPVCSISW-------------SRNG 248
+ G +L V +DG++ + +F G II AH V S SW ++
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170
Query: 249 YKIISASTDNNVCIW 263
K ++ DN V IW
Sbjct: 171 RKFVTGGADNLVKIW 185
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 206 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
G G DG + LWD T + H V S+++S + +I+S S D + +W+
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
Query: 266 LTGECE---QKYRFPSPILKVQFHPRNDHMFLV 295
L G C+ Q + V+F P + + +V
Sbjct: 158 L-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 28/167 (16%)
Query: 109 WEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW 168
W+K LVK+ + +L + + G L+ ++++ G+L A G DG+ +LW
Sbjct: 193 WDK----LVKVWNLANCKLKTNHIGHTGYLNTVTVS------PDGSLCASGGKDGQAMLW 242
Query: 169 DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------DGRIVLWD 222
D L G H++ DG D I+ A+ + N+ A G + +G+I++ D
Sbjct: 243 D-LNEG------KHLY-TLDGG-DIIN-ALCFSPNRYWLCAATGPSIKIWDLEGKIIV-D 291
Query: 223 FLTRGIAKIISAHMHPVC-SISWSRNGYKIISASTDNNVCIWDVLTG 268
L + + S P C S++WS +G + + TDN V +W V G
Sbjct: 292 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 208 LLAVGCNDGRIVLWDFLTR-----GIA-KIISAHMHPVCSISWSRNGYKIISASTDNNVC 261
++ D I++W LTR GI + + H H V + S +G +S S D +
Sbjct: 53 MILSASRDKTIIMWK-LTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 262 IWDVLTGECEQKY-RFPSPILKVQFHPRNDHM 292
+WD+ TG +++ +L V F N +
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 206 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
G G DG + LWD T + H V S+++S + +I+S S D + +W+
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
Query: 266 LTGECE---QKYRFPSPILKVQFHPRNDHMFLV 295
L G C+ Q + V+F P + + +V
Sbjct: 135 L-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 166
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 28/167 (16%)
Query: 109 WEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW 168
W+K LVK+ + +L + + G L+ ++++ G+L A G DG+ +LW
Sbjct: 170 WDK----LVKVWNLANCKLKTNHIGHTGYLNTVTVS------PDGSLCASGGKDGQAMLW 219
Query: 169 DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------DGRIVLWD 222
D L G H++ DG D I+ A+ + N+ A G + +G+I++ D
Sbjct: 220 D-LNEG------KHLY-TLDGG-DIIN-ALCFSPNRYWLCAATGPSIKIWDLEGKIIV-D 268
Query: 223 FLTRGIAKIISAHMHPVC-SISWSRNGYKIISASTDNNVCIWDVLTG 268
L + + S P C S++WS +G + + TDN V +W V G
Sbjct: 269 ELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 208 LLAVGCNDGRIVLWDFLTR-----GIA-KIISAHMHPVCSISWSRNGYKIISASTDNNVC 261
++ D I++W LTR GI + + H H V + S +G +S S D +
Sbjct: 30 MILSASRDKTIIMWK-LTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 262 IWDVLTGECEQKY-RFPSPILKVQFHPRNDHM 292
+WD+ TG +++ +L V F N +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 27/216 (12%)
Query: 230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY-RFPSPILKVQFHPR 288
+ + H V ++ S NG +SAS D+++ +W++ G+C+ K+ +L V F P
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 289 N--------DHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS 340
N D+ V ++ + + G H D S + S D +V+G
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAH----TDWVSCVRFSPSLD--APVIVSGGW 174
Query: 341 KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKD 400
V V L K T + S+ + G+ + D + R+++ L G
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD----LTKG-- 228
Query: 401 GDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR 436
+ L ++ + CFS + ++CA + +
Sbjct: 229 ------EALSEMAAGAPINQICFSPNRYWMCAATEK 258
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
++ G D + +WD T + + H + V S++ S +G S+ D +WD+
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 268 GECEQKYRFPSPILKVQFHPRNDHM 292
GE + +PI ++ F P M
Sbjct: 228 GEALSEMAAGAPINQICFSPNRYWM 252
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG 174
NLVK+ G L+ D+ + ++++ G+L A DG LWD LT+G
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYVTSVTVS------PDGSLCASSDKDGVARLWD-LTKG 228
Query: 175 IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA 234
A A P + + CA ++G + N IV +G KI+
Sbjct: 229 EALSEMAAGAP-INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIV-- 285
Query: 235 HMHPVC-SISWSRNGYKIISASTDNNVCIWDV 265
P C SI+WS +G + S TDN + +W V
Sbjct: 286 ---PECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 201 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNV 260
A + G D + LW+ H V S+++S + +I+S DN +
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNAL 133
Query: 261 CIWDVLTGECEQKY------------RF-PSPILKVQFHPRNDHMFLVCPMRHAAVLVDT 307
+W+V GEC RF PS V D++ V + ++ D
Sbjct: 134 RVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL 192
Query: 308 DG-DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVL 345
G + + + D S+ AS D+ G + +KG+ L
Sbjct: 193 KGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHP-EFDGALDCISLAVTCAFNKRGTLLAVGCN 214
+ G DG + +WD + A+M P + + DC ++A A+N+ ++ G +
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDP---VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD 188
Query: 215 DGRIVLWDFLTRGIAKIISAHM-HPVCSISWSRNGY---KIISASTDNNVCIWDVLTGEC 270
+G I L+D R +A ++ + VCS+ + R K+++ S + ++D+ T
Sbjct: 189 NGDIKLFDL--RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP 246
Query: 271 EQKY------RFPSPILKVQFHPRNDHMFLVC 296
+ + S + +V+ P+N +FL
Sbjct: 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTA 278
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 232 ISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILK------- 282
+ H +SW+ N GY ++SAS D+ +C+WD+ E + I
Sbjct: 181 LRGHQKEGYGLSWNPNLNGY-LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 283 -VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP---IDEDSDLSIVASFDRRGQHVV-T 337
V +H ++ +F ++ DT ++ P +D + SF+ + ++ T
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 338 GNSKGKVLVLSCPALELK-ASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYN----- 390
G++ V + L+LK SF++ I ++++ +L ++G DR + V++
Sbjct: 300 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
Query: 391 HQEVLNAGKDGDPE 404
++ +DG PE
Sbjct: 360 EEQSTEDAEDGPPE 373
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 25/147 (17%)
Query: 162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW 221
DGR+++W+ LT I H + CAF G +A G D ++
Sbjct: 87 DGRLIVWNALTSQKTHAIKLH-----------CPWVMECAFAPNGQSVACGGLDSACSIF 135
Query: 222 DFLTRG-------IAKIISAHMHPVCSISWSRNG-YKIISASTDNNVCIWDVLTGECEQK 273
+ ++ ++++++ H S + + ++I+ S D +WDV TG+
Sbjct: 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195
Query: 274 Y--RFPS----PILKVQFHPRNDHMFL 294
+ FPS +L + + N +MF+
Sbjct: 196 FGSEFPSGHTADVLSLSINSLNANMFI 222
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
F G G +DG L+D T ++ + E D + + + + AF+ G L
Sbjct: 257 FFPDGQRFGTGSDDGTCRLFDMRTGHQLQV----YNREPDRNDNELPIVTSVAFSISGRL 312
Query: 209 LAVGCNDGRIVLWDFL----TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW 263
L G ++G +WD L + + ++H + + S +G + + S D N+ IW
Sbjct: 313 LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSP-ILKVQFHPR 288
+ + H V S+ W+ I+SAS D + +W+ LT + + P +++ F P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 289 NDHMFL-----VCPMRHAAVLVDTDGDHQI 313
+ C + + + D DG+ +
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPV 149
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 141 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII--SAHMHPEFDGALDCISLAV 198
+ + + AF+ G LL G ++G +WD L +A+++ + +G + C+ L+
Sbjct: 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTL---LAEMVLNLGTLQNSHEGRISCLGLS- 353
Query: 199 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII 232
G+ L G D + +W F G KI+
Sbjct: 354 -----SDGSALCTGSWDKNLKIWAF--SGHRKIV 380
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 232 ISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILK------- 282
+ H +SW+ N GY ++SAS D+ +C+WD+ E + I
Sbjct: 179 LRGHQKEGYGLSWNPNLNGY-LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 283 -VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP---IDEDSDLSIVASFDRRGQHVV-T 337
V +H ++ +F ++ DT ++ P +D + SF+ + ++ T
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 338 GNSKGKVLVLSCPALELK-ASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYN----- 390
G++ V + L+LK SF++ I ++++ +L ++G DR + V++
Sbjct: 298 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
Query: 391 HQEVLNAGKDGDPE 404
++ +DG PE
Sbjct: 358 EEQSTEDAEDGPPE 371
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 19/123 (15%)
Query: 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG 212
GTL+A DG I+LW+ + +SA + AF+ LA
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE------------VFSLAFSPNRYWLAAA 255
Query: 213 CNDGRIV-------LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
G V L D L A +A S++WS +G + + TDN + +W V
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 266 LTG 268
+T
Sbjct: 316 MTA 318
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 34/208 (16%)
Query: 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA 144
+ C + DG Y + S + L +W+ + G + G K DV+ D
Sbjct: 69 QDCTLTADGAYALSASWDK-TLRLWDVATGETYQRFVGHKS----DVMSVD--------- 114
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
+K+ +++ G D I +W + +A ++ G D +S V N+
Sbjct: 115 ----IDKKASMIISGSRDKTIKVWTIKGQCLATLL---------GHNDWVS-QVRVVPNE 160
Query: 205 RG-----TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNN 259
+ T+++ G ND + W+ I H + +++ S +G I SA D
Sbjct: 161 KADDDSVTIISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 260 VCIWDVLTGECEQKYRFPSPILKVQFHP 287
+ +W++ + + + F P
Sbjct: 220 IMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
H H V + + +G +SAS D + +WDV TGE Q++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 24/135 (17%)
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL-AVTCAFN 203
V A K GT+LA DG++ +W G I+ H A+ S+ +V A +
Sbjct: 59 VDWAHPKFGTILASCSYDGKVXIWK-EENGRWSQIAVH-------AVHSASVNSVQWAPH 110
Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAK--IISAHMHPVCSISW-------------SRNG 248
+ G L V +DG++ + +F G II AH V S SW ++
Sbjct: 111 EYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170
Query: 249 YKIISASTDNNVCIW 263
K ++ DN V IW
Sbjct: 171 RKFVTGGADNLVKIW 185
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 232 ISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILK------- 282
+ H +SW+ N GY ++SAS D+ +C+WD+ E + I
Sbjct: 177 LRGHQKEGYGLSWNPNLNGY-LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 283 -VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP---IDEDSDLSIVASFDRRGQHVV-T 337
V +H ++ +F ++ DT ++ P +D + SF+ + ++ T
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 338 GNSKGKVLVLSCPALELK-ASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYN----- 390
G++ V + L+LK SF++ I ++++ +L ++G DR + V++
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 391 HQEVLNAGKDGDPE 404
++ +DG PE
Sbjct: 356 EEQSTEDAEDGPPE 369
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 76/370 (20%), Positives = 134/370 (36%), Gaps = 81/370 (21%)
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A+N GTLLA D RI +W T G + I + + + + A++ G
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWG--TEGDSWICKSVLSEGHQRTVRKV------AWSPCGN 74
Query: 208 LLAVGCNDGRIVLW-----DFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCI 262
LA D +W DF + H + V S++W+ +G + + S D +V +
Sbjct: 75 YLASASFDATTCIWKKNQDDF---ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWV 131
Query: 263 WDVLTGECEQKYRFPS-------PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP 315
W+V + E +Y S + V +HP + +L D +
Sbjct: 132 WEV---DEEDEYECVSVLNSHTQDVKHVVWHPSQE------------LLASASYDDTVKL 176
Query: 316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN 375
E+ D + A+ + + + S+ F G
Sbjct: 177 YREEEDDWVCC-----------------------------ATLEGHESTVWSLAFDPSGQ 207
Query: 376 CLLVNTGDRLIRVY------NHQEVLNAGKDGDPEPIQKLQDLVNKTMW--KKCCFSGDG 427
L + DR +R++ N Q V +G D + I L ++T++ C +G
Sbjct: 208 RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGAL 267
Query: 428 EYVCAGSA----RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASIS-SGV 481
C A ++ ++ +L LH + + V W+P P ++AS S G
Sbjct: 268 ATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327
Query: 482 VSLWAQNQVE 491
V+ W + E
Sbjct: 328 VAFWKYQRPE 337
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 19/123 (15%)
Query: 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG 212
GTL+A DG I+LW+ + +SA + AF+ LA
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE------------VFSLAFSPNRYWLAAA 255
Query: 213 CNDGRIV-------LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
G V L D L A A S++WS +G + + TDN + +W V
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 266 LTG 268
+T
Sbjct: 316 MTA 318
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 34/208 (16%)
Query: 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA 144
+ C + DG Y + S + L +W+ + G + G K DV+ D
Sbjct: 69 QDCTLTADGAYALSASWDK-TLRLWDVATGETYQRFVGHKS----DVMSVD--------- 114
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
+K+ +++ G D I +W + +A ++ G D +S V N+
Sbjct: 115 ----IDKKASMIISGSRDKTIKVWTIKGQCLATLL---------GHNDWVS-QVRVVPNE 160
Query: 205 RG-----TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNN 259
+ T+++ G ND + W+ I H + +++ S +G I SA D
Sbjct: 161 KADDDSVTIISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 260 VCIWDVLTGECEQKYRFPSPILKVQFHP 287
+ +W++ + + + F P
Sbjct: 220 IMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
H H V + + +G +SAS D + +WDV TGE Q++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 19/123 (15%)
Query: 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG 212
GTL+A DG I+LW+ + +SA + AF+ LA
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE------------VFSLAFSPNRYWLAAA 255
Query: 213 CNDGRIV-------LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
G V L D L A A S++WS +G + + TDN + +W V
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 266 LTG 268
+T
Sbjct: 316 MTA 318
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 34/208 (16%)
Query: 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA 144
+ C + DG Y + S + L +W+ + G + G K DV+ D
Sbjct: 69 QDCTLTADGAYALSASWDK-TLRLWDVATGETYQRFVGHKS----DVMSVD--------- 114
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
+K+ +++ G D I +W + +A ++ G D +S V N+
Sbjct: 115 ----IDKKASMIISGSRDKTIKVWTIKGQCLATLL---------GHNDWVS-QVRVVPNE 160
Query: 205 RG-----TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNN 259
+ T+++ G ND + W+ I H + +++ S +G I SA D
Sbjct: 161 KADDDSVTIISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 260 VCIWDVLTGECEQKYRFPSPILKVQFHP 287
+ +W++ + + + F P
Sbjct: 220 IMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
H H V + + +G +SAS D + +WDV TGE Q++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 232 ISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILK-------- 282
+ H +SW+ N ++SAS D+ VC+WD+ G E K I
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 283 VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP---IDEDSDLSIVASFDRRGQHVV-TG 338
V +H ++ +F ++ DT + P +D + SF+ + ++ TG
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 339 NSKGKVLVLSCPALELK-ASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYN-----H 391
++ V + L+LK +F++ I + ++ +L ++G DR + V++
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 392 QEVLNAGKDGDPE 404
++ +DG PE
Sbjct: 355 EQSAEDAEDGPPE 367
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 19/124 (15%)
Query: 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG 212
GTL+A DG I+LW+ + +SA + AF+ LA
Sbjct: 202 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE------------VFSLAFSPNRYWLAAA 249
Query: 213 CNDGRIV-------LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
G V L D L A A S++WS +G + + TDN + +W V
Sbjct: 250 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Query: 266 LTGE 269
+T
Sbjct: 310 MTAN 313
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 34/208 (16%)
Query: 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA 144
+ C + DG Y + S + L +W+ + G + G K DV+ D
Sbjct: 63 QDCTLTADGAYALSASWDK-TLRLWDVATGETYQRFVGHKS----DVMSVD--------- 108
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
+K+ +++ G D I +W + +A ++ G D +S V N+
Sbjct: 109 ----IDKKASMIISGSRDKTIKVWTIKGQCLATLL---------GHNDWVS-QVRVVPNE 154
Query: 205 RG-----TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNN 259
+ T+++ G ND + W+ I H + +++ S +G I SA D
Sbjct: 155 KADDDSVTIISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE 213
Query: 260 VCIWDVLTGECEQKYRFPSPILKVQFHP 287
+ +W++ + + + F P
Sbjct: 214 IMLWNLAAKKAMYTLSAQDEVFSLAFSP 241
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
H H V + + +G +SAS D + +WDV TGE Q++
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 97
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 92/236 (38%), Gaps = 69/236 (29%)
Query: 112 SVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 171
++G++VK+ ++ F + D I L V+ + GT+ A D + LW L
Sbjct: 2 AMGSMVKLAEFSR------TATFAWSHDKIPLLVSGTVS--GTVDANFSTDSSLELWSLL 53
Query: 172 TRGIAKIISA-------------HMHPEFDGALDCISLAV-------------------- 198
K I++ H + GALD SL +
Sbjct: 54 AADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS 113
Query: 199 ----TCAFN-KRGTLLAVGCNDGRIVLWDF------------LTRGIAKIISAHMHPVCS 241
T FN K+ +LA G N+G I +WD LT G + + + V S
Sbjct: 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM---SSVDEVIS 170
Query: 242 ISWSRN-GYKIISASTDNNVCIWDVLTGE--CEQKYRFPSPILK-----VQFHPRN 289
++W+++ + SA + N IWD+ + Y P+ +K V++HP+N
Sbjct: 171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 139 DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAV 198
D + + ++ G+ L+VG +G + ++D ++ + ++ H + C+S
Sbjct: 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ-----ARVGCLS--- 183
Query: 199 TCAFNKRGTLLAVGCNDGRIVLWDF-LTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
+N+ +L+ G G I D + + H VC ++W +G ++ S D
Sbjct: 184 ---WNRH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238
Query: 258 NNVCIWD 264
N V IWD
Sbjct: 239 NVVQIWD 245
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 11/140 (7%)
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
A+ G LA G ND + +WD + I + A+ ++ C +
Sbjct: 224 AWRSDGLQLASGGNDNVVQIWDARSS-----IPKFTKTNHNAAVKAVAW---CPWQSNLL 275
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS--TDNNVCIWDV 265
G D +I W+ T + A V S+ WS + +I+S DNN+ IW
Sbjct: 276 ATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334
Query: 266 LTGECEQKYRFPSPILKVQF 285
+ ++ P+ +V +
Sbjct: 335 SSSGLTKQVDIPAHDTRVLY 354
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 212 GCNDGRIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE 269
G D + +W + + G+ K I AH V + S +G + +A++D N+ W V G+
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382
Query: 270 CEQKYRFPSPILKV 283
++ P PI K
Sbjct: 383 HVKR---PIPITKT 393
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 20/193 (10%)
Query: 232 ISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILK-------- 282
+ H +SW+ N ++SAS D+ VC+WD+ G E K I
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 283 VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP---IDEDSDLSIVASFDRRGQHVV-TG 338
V +H ++ +F + DT + P +D + SF+ + ++ TG
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 339 NSKGKVLVLSCPALELK-ASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYN-----H 391
++ V + L+LK +F++ I + ++ +L ++G DR + V++
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 392 QEVLNAGKDGDPE 404
++ +DG PE
Sbjct: 355 EQSAEDAEDGPPE 367
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 215 DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK- 273
DGR+ +W+ I AH V +S S NG I + D + IWD+L Q+
Sbjct: 193 DGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251
Query: 274 YRFPSPILKVQFHPR 288
+ S I ++ F+P+
Sbjct: 252 FDAGSTINQIAFNPK 266
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 203 NKRGTLLAVGCNDGRIVLWDFLTR------GIA-KIISAHMHPVCSISWSRNGYKIISAS 255
N+ +L G D +++W GI K ++ H H V ++ S+ IS+S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 256 TDNNVCIWDVLTGECEQKY-RFPSPILKVQFHPRNDHMF 293
D + +WD+ TG +++ S + V F P N +
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG 212
GTL+A DG I LW+ + +SA + AF+ LA
Sbjct: 208 GTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE------------VFSLAFSPNRYWLAAA 255
Query: 213 CNDGRIV-------LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
G V L D L A A S++WS +G + + TDN + +W V
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Query: 266 LTG 268
T
Sbjct: 316 XTA 318
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 34/208 (16%)
Query: 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA 144
+ C + DG Y + S + L +W+ + G + G K DV D
Sbjct: 69 QDCTLTADGAYALSASWDK-TLRLWDVATGETYQRFVGHKS----DVXSVD--------- 114
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
+K+ + + G D I +W + +A ++ G D +S V N+
Sbjct: 115 ----IDKKASXIISGSRDKTIKVWTIKGQCLATLL---------GHNDWVS-QVRVVPNE 160
Query: 205 RG-----TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNN 259
+ T+++ G ND + W+ I H + +++ S +G I SA D
Sbjct: 161 KADDDSVTIISAG-NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 260 VCIWDVLTGECEQKYRFPSPILKVQFHP 287
+ +W++ + + + F P
Sbjct: 220 IXLWNLAAKKAXYTLSAQDEVFSLAFSP 247
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
H H V + + +G +SAS D + +WDV TGE Q++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 34/208 (16%)
Query: 85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA 144
+ C + DG Y + S + L +W+ + G + G K DV+ D
Sbjct: 69 QDCTLTADGAYALSASWDK-TLRLWDVATGETYQRFVGHKS----DVMSVD--------- 114
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
+K+ +++ G D I +W + +A ++ G D +S V N+
Sbjct: 115 ----IDKKASMIISGSRDKTIKVWTIKGQCLATLL---------GHNDWVS-QVRVVPNE 160
Query: 205 RG-----TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNN 259
+ T+++ G ND + W+ I H + +++ S +G I SA D
Sbjct: 161 KADDDSVTIISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE 219
Query: 260 VCIWDVLTGECEQKYRFPSPILKVQFHP 287
+ +W++ + + + F P
Sbjct: 220 IMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY 274
H H V + + +G +SAS D + +WDV TGE Q++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG 212
GTL+A DG I+LW+ + +SA + AF+ LA
Sbjct: 208 GTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE------------VFSLAFSPNRYWLAAA 255
Query: 213 CNDGRIV-------LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW 263
G V L D L A A S++WS +G + + TDN + +W
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 20/193 (10%)
Query: 232 ISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILK-------- 282
+ H +SW+ N ++SAS D+ +C+WD+ E K I
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 283 VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP---IDEDSDLSIVASFDRRGQHVV-TG 338
V +H ++ +F ++ DT ++ P +D + SF+ + ++ TG
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 339 NSKGKVLVLSCPALELK-ASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYN-----H 391
++ V + L+LK SF++ I ++++ +L ++G DR + V++
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE 352
Query: 392 QEVLNAGKDGDPE 404
++ +DG PE
Sbjct: 353 EQSPEDAEDGPPE 365
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 31/157 (19%)
Query: 150 NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL 209
+++G L+A + G + LW+ L + + +++ E D + +S+ GT
Sbjct: 104 SEKGILVA--SDSGAVELWEILEKE-SLLVNKFAKYEHDDIVKTLSVF------SDGTQA 154
Query: 210 AVGCNDGRIVLWDFLTRGIAKIISAHMHPV-CSISWSRNGYKIISASTDNNVCIWDVLTG 268
G D + +WD + + K +AH V C + +S D + +WD
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT--- 211
Query: 269 ECEQKYRFPSPILKVQF------------HPRNDHMF 293
R P P ++ F HP D F
Sbjct: 212 ------RKPKPATRIDFCASDTIPTSVTWHPEKDDTF 242
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 150 NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL 209
N+ +LL N R++++D T +II + GA+ I + C +L
Sbjct: 179 NEEKSLLVALTNLSRVIIFDIRTLERLQIIE---NSPRHGAVSSICIDEECC------VL 229
Query: 210 AVGCNDGRIVLWDFLTRGIAKIISAHMH-PVCSIS----WSRNGYKIISASTDNNVCIWD 264
+G G I +WD + + S H P+ + + +N ++ S+ + IW+
Sbjct: 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289
Query: 265 VLTGECEQKY 274
+ G C+ +
Sbjct: 290 FVKGHCQYAF 299
>pdb|2W56|A Chain A, Structure Of The Hypothetical Protein Vc0508 From Vibrio
Cholerae Vsp-Ii Pathogenicity Island
Length = 147
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 467 WHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVA 526
+HPV I S+G W+ + +++ + EL+ N+++D R +F ++
Sbjct: 57 FHPVEMAICQTSTGE---WSIEYITDFAYMGNYYPELERNLDFDFRVGQFFVAYRGWLPM 113
Query: 527 QGSDDQDE 534
QGS D E
Sbjct: 114 QGSRDAKE 121
>pdb|2W56|B Chain B, Structure Of The Hypothetical Protein Vc0508 From Vibrio
Cholerae Vsp-Ii Pathogenicity Island
Length = 147
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 467 WHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVA 526
+HPV I S+G W+ + +++ + EL+ N+++D R +F ++
Sbjct: 57 FHPVEMAICQTSTGE---WSIEYITDFAYMGNYYPELERNLDFDFRVGQFFVAYRGWLPM 113
Query: 527 QGSDDQDE 534
QGS D E
Sbjct: 114 QGSRDAKE 121
>pdb|3AJ5|A Chain A, Ha1 (Ha33) Subcomponent Of Botulinum Type C Progenitor
Toxin Complexed With N-Acetylgalactosamine, Bound At
Site Ii
pdb|3AJ5|B Chain B, Ha1 (Ha33) Subcomponent Of Botulinum Type C Progenitor
Toxin Complexed With N-Acetylgalactosamine, Bound At
Site Ii
Length = 286
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR---NDHMF 293
+ V IS S N K++ + + V +W+ L+G QK+R K + + N +
Sbjct: 12 NEVFFISPSNNTNKVLDKISQSEVKLWNKLSG-ANQKWRLIYDTNKQAYKIKVMDNTSLI 70
Query: 294 LV--CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA 351
L P+ +V DT+GD+Q ++ ++ R V+ N LVL
Sbjct: 71 LTWNAPLSSVSVKTDTNGDNQY--------WYLLQNYISRN--VIIRNYMNPNLVL---Q 117
Query: 352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDR 384
+ + ST S +F + NC+ +R
Sbjct: 118 YNIDDTLMVSTQTSSSNQFFKFSNCIYEALNNR 150
>pdb|1QXM|A Chain A, Crystal Structure Of A Hemagglutinin Component (Ha1) From
Type C Clostridium Botulinum
pdb|1QXM|B Chain B, Crystal Structure Of A Hemagglutinin Component (Ha1) From
Type C Clostridium Botulinum
Length = 300
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR---NDHMF 293
+ V IS S N K++ + + V +W+ L+G QK+R K + + N +
Sbjct: 26 NEVFFISPSNNTNKVLDKISQSEVKLWNKLSG-ANQKWRLIYDTNKQAYKIKVMDNTSLI 84
Query: 294 LV--CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA 351
L P+ +V DT+GD+Q ++ ++ R +V+ N LVL
Sbjct: 85 LTWNAPLSSVSVKTDTNGDNQY--------WYLLQNYISR--NVIIRNYMNPNLVL---Q 131
Query: 352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDR 384
+ + ST S +F + NC+ +R
Sbjct: 132 YNIDDTLMVSTQTSSSNQFFKFSNCIYEALNNR 164
>pdb|3AJ6|A Chain A, Ha1 (Ha33) Mutant F179i Of Botulinum Type C Progenitor
Toxin Complexed With N-Acetylgalactosamine, Bound At
Site Ii
pdb|3AJ6|B Chain B, Ha1 (Ha33) Mutant F179i Of Botulinum Type C Progenitor
Toxin Complexed With N-Acetylgalactosamine, Bound At
Site Ii
Length = 286
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR---NDHMF 293
+ V IS S N K++ + + V +W+ L+G QK+R K + + N +
Sbjct: 12 NEVFFISPSNNTNKVLDKISQSEVKLWNKLSG-ANQKWRLIYDTNKQAYKIKVMDNTSLI 70
Query: 294 LV--CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA 351
L P+ +V DT+GD+Q ++ ++ R V+ N LVL
Sbjct: 71 LTWNAPLSSVSVKTDTNGDNQY--------WYLLQNYISRN--VIIRNYMNPNLVL---Q 117
Query: 352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDR 384
+ + ST S +F + NC+ +R
Sbjct: 118 YNIDDTLMVSTQTSSSNQFFKFSNCIYEALNNR 150
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268
+ +D I +WD+ T+ + HM V + IIS S D + IW+ T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 269 ECEQ 272
+ E+
Sbjct: 261 KVEK 264
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND 215
+ +D I +WD+ T+ + HM +S AV F+ ++ G D
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHM--------SNVSFAV---FHPTLPIIISGSED 249
Query: 216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYK-IISASTDNNVCI 262
G + +W+ T + K ++ + I+ G K I++ DN +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297
>pdb|3AH1|A Chain A, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple N-Acetylneuramic Acid
pdb|3AH1|B Chain B, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple N-Acetylneuramic Acid
pdb|3AH2|A Chain A, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple N-Acetylgalactosamine
pdb|3AH2|B Chain B, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple N-Acetylgalactosamine
pdb|3AH4|A Chain A, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple Galactose
pdb|3AH4|B Chain B, Ha1 Subcomponent Of Botulinum Type C Progenitor Toxin
Comple Galactose
Length = 288
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR---NDHMF 293
+ V IS S N K++ + + V +W+ L+G QK+R K + + N +
Sbjct: 14 NEVFFISPSNNTNKVLDKISQSEVKLWNKLSG-ANQKWRLIYDTNKQAYKIKVMDNTSLI 72
Query: 294 LV--CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA 351
L P+ +V DT+GD+Q ++ ++ R V+ N LVL
Sbjct: 73 LTWNAPLSSVSVKTDTNGDNQY--------WYLLQNYISRN--VIIRNYMNPNLVL---Q 119
Query: 352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDR 384
+ + ST S +F + NC+ +R
Sbjct: 120 YNIDDTLMVSTQTSSSNQFFKFSNCIYEALNNR 152
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268
+ +D I +WD+ T+ + HM V + IIS S D + IW+ T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 269 ECEQ 272
+ E+
Sbjct: 261 KVEK 264
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND 215
+ +D I +WD+ T+ + HM +S AV F+ ++ G D
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHM--------SNVSFAV---FHPTLPIIISGSED 249
Query: 216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYK-IISASTDNNVCI 262
G + +W+ T + K ++ + I+ G K I++ DN +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268
+ +D I +WD+ T+ + HM V + IIS S D + IW+ T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 269 ECEQ 272
+ E+
Sbjct: 261 KVEK 264
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND 215
+ +D I +WD+ T+ + HM +S AV F+ ++ G D
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHM--------SNVSFAV---FHPTLPIIISGSED 249
Query: 216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYK-IISASTDNNVCI 262
G + +W+ T + K ++ + I+ G K I++ DN +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268
+ +D I +WD+ T+ + HM V + IIS S D + IW+ T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 269 ECEQ 272
+ E+
Sbjct: 261 KVEK 264
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND 215
+ +D I +WD+ T+ + HM +S AV F+ ++ G D
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHM--------SNVSFAV---FHPTLPIIISGSED 249
Query: 216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYK-IISASTDNNVCI 262
G + +W+ T + K ++ + I+ G K I++ DN +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 24/152 (15%)
Query: 208 LLAVGCNDGRIVLWDFLTRGIAK-------IISAHMHPVCSISWSRNGYKII-SASTDNN 259
++A G D +++W+ G+ + H V ++W ++ SA DN
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 260 VCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED 319
+ +WDV TG L HP D ++ V R A++ + D ++ I E
Sbjct: 156 ILVWDVGTGAAVL-------TLGPDVHP--DTIYSVDWSRDGALICTSCRDKRVRVI-EP 205
Query: 320 SDLSIVASFDR-----RGQHVVTGNSKGKVLV 346
++VA DR R H V S+GK+L
Sbjct: 206 RKGTVVAEKDRPHEGTRPVHAVF-VSEGKILT 236
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISA-----HMHPVCSISWSRNGYKIISASTDN 258
+RG L+A + G + LW+ L I+S H V ++S +G + +S S D
Sbjct: 93 ERGILVA--SDSGAVELWE-LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI 149
Query: 259 NVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDT 307
+ +WD+ YR + + V P D +FL C + +L DT
Sbjct: 150 CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 18/175 (10%)
Query: 172 TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI 231
T G K++ ++ + + + +S F G L D ++ +W +
Sbjct: 114 TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT 173
Query: 232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH 291
+ H V I+ G ++SAS D + +W+ TG + N H
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN----------RKENPH 223
Query: 292 MFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV 346
+ A+ V TD + + ++L F G++V+ G+ G + V
Sbjct: 224 ----DGVNSIALFVGTDRQLHEISTSKKNNL----EFGTYGKYVIAGHVSGVITV 270
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 24/152 (15%)
Query: 208 LLAVGCNDGRIVLWDFLTRGIAK-------IISAHMHPVCSISWSRNGYKII-SASTDNN 259
++A G D +++W+ G+ + H V ++W ++ SA DN
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 260 VCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED 319
+ +WDV TG L HP D ++ V R A++ + D ++ I E
Sbjct: 156 ILVWDVGTGAAVL-------TLGPDVHP--DTIYSVDWSRDGALICTSCRDKRVRVI-EP 205
Query: 320 SDLSIVASFDR-----RGQHVVTGNSKGKVLV 346
++VA DR R H V S+GK+L
Sbjct: 206 RKGTVVAEKDRPHEGTRPVHAVF-VSEGKILT 236
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 18/175 (10%)
Query: 172 TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI 231
T G K++ ++ + + + +S F G L D ++ +W +
Sbjct: 117 TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT 176
Query: 232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH 291
+ H V I+ G ++SAS D + +W+ TG + N H
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN----------RKENPH 226
Query: 292 MFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV 346
+ A+ V TD + + ++L F G++V+ G+ G + V
Sbjct: 227 ----DGVNSIALFVGTDRQLHEISTSKKNNL----EFGTYGKYVIAGHVSGVITV 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,456,151
Number of Sequences: 62578
Number of extensions: 833361
Number of successful extensions: 2448
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1986
Number of HSP's gapped (non-prelim): 318
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)